Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168131.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30340
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Found at i:2278 original size:26 final size:26
Alignment explanation
Indices: 2249--2301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2239 CTGGTCCGAT
2249 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2301 C
1 C
2302 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2895 original size:895 final size:890
Alignment explanation
Indices: 631--3222 Score: 3609
Period size: 882 Copynumber: 2.9 Consensus size: 890
621 GATCCTGTTG
* * *
631 CCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
1 CCGTAACCATCGGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
* *
696 GAAACGAGCGGATGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGCGGATCGAT
66 GAAACGA-CGG--GGGCGGGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGAT
* * * * *
761 AGGATGGCAGGTAGGTTTAGGCACATCTTCATATTTCTAACCAATGCCATTGCCATTTTTATGGC
127 AGGGTGGTAGGTAGGTTTACGCACATCTTCATATTTCT-GCC-ATGCCAATGCCATTTTTATGGC
826 TTGTAAATTCATACAATGGT-CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
190 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
*
890 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCA-AATGGA
255 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA-GGA
** * *
954 GTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAG
319 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTTAG
* * * *
1019 CAAAAAACTCGTAGTGTACAGGATTTTGTAACCATTTCAACAAAGTGTCCCCATTTCAGACACTT
384 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA-AAAGTGTCCCCATTTCAGACACTT
* * *
1084 TAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCT-TTCTCAGGGGGTGTGAGTTCTCGA
448 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTAGA
* *
1148 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGT
512 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
1213 GCACACCCCCCCGCCCCTCCCAATCGTCGGAACCCCAATGTC-TCCGGTCAGGTTCTCC-AGTGA
577 GCACACCCCCCCG-CCC-CCCAATCGTCGAAACCCCAATGTCGT-CGGTCAGGTTCTCCGA-CGA
*
1276 TGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATG
638 TGCTCCGGCGATGGTGCCCCGAGC-AAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATG
* * *
1341 TGCACCCGCAACCCTCGGTCCGGTCCGATCTTACGCTGGGAATGAACTCCGTATGCTTAGACTGA
702 TGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * **
1406 GAATGAACTCCATAAGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCAGTAGGTCGGAGG
767 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCAGACCGGAGG
* * * * *
1471 GGTAGGATGAGCAAGTCGGGGATCGATCGGGTCCCCCCTACATATTGTTGATCCTACTG
832 GGTAGGATGAGCAAGCCAGGGATCGATCGGGTCCCCCCTACATACTGTCGATCCTACTA
* * *
1530 CCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG----CTG--
1 CCGTAACCATCGGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
* ** * *
1589 G----G-C--GGGCGAGCACTGGGCCAGCCAAAGAGGCGAGATGCGCAAGCCGTGGATCGATAGG
66 GAAACGACGGGGGCGGGCACTACGCCGGCCAGAGAGGCG-GATGCGCAAGCCGTGGATCGATAGG
* **
1647 GTGGTAGGTTGGTTTACGCACATCTTCATATTTCTGCCACACCAATGCCATTTTTATGGCTTGTA
130 GTGGTAGGTAGGTTTACGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* * *
1712 AATTCTTATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-CATCTCGTTTTCTAT
195 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA-CTCGTTTTCTAT
* ** * *
1776 TTTTCACGATTTTTGAAACTTTTTACAATTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTTT
259 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * * ** * *
1841 GGCCCCACAGTTGGTAGATGTGATCCTCATATTTTTTTTGGCATGCACAAAATAATTTAGCTAAA
324 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTTAGCTAAA
* *
1906 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
389 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
1971 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
453 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTG
*
2036 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACA-
518 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
2100 CCCCCCGCCACCCCAATCGTCGAAACCCCAATATCGTTGGTCAGGTTTTCCGACGATGCTCCGGC
583 CCCCCCGCC-CCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * *
2165 AATGGTGCCCCGAGCAAAAAAAATACGCCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTA
647 GATGGTGCCCCGAGCAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCA
2230 ACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
712 ACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
2295 CGTATGCCTAAGTCAACCCACGAAACGAGCATG-GGGCGCTCAGCCA-ACCGGAGGGGTAGGATG
777 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-CAGACCGGAGGGGTAGGATG
* *
2358 CA-CAAGCCAGGGATCGGTCGGGTCCCCCCCTACGA-GCTGTCGATCCTACTA
841 -AGCAAGCCAGGGATCGATCGGGT-CCCCCCTAC-ATACTGTCGATCCTACTA
* *
2409 CCGTAACCATTGG-TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 CCGTAACCATCGGTTC-GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
* *
2473 CGAAACGAACGGGCAGGCGGGCATTACGCCGGCCAGAGAGGCAGGATACGCAAGCCGTGGATCGA
65 CGAAACG-ACGGG--GGCGGGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGA
* *
2538 TAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTATGGCT
126 TAGGGTGGTAGGTAGGTTTACGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * *
2603 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTCTAATGGCAAGATGACTCGTTTCC
191 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTC
* *
2668 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTAAAATTTTATCAGAGGGAG
256 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAG
*
2733 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGC
320 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTTAGC
* * *
2798 TAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCTCATTTCGGACAC-TT
385 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTT
2862 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
449 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
* *
2927 TTTGATGAGGGATATGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
514 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * ** * *
2992 ACACCCTCTCCCTCGCCCCCCAATC-ACTAGAACCATAATGCCGTCGGTCTGGTTCTCCGACGAT
579 ACA-CC-C-CCC-CGCCCCCCAATCGTCGA-AACCCCAATGTCGTCGGTCAGGTTCTCCGACGAT
* * * * * **
3056 GCTCCGGCGACGGTGCGCTGGGTGAAAAAAAATGTAACACCAGCACATGCTCGAGCCCAGCATGT
639 GCTCCGGCGATGGTGCCCCGAG-CAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGT
* ** *
3121 GCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATAAACTCTATATGCTTAGACTAGG
703 GCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
3186 AATGAAATCCGTATGCTTAAGTTAACCCACGAAACGA
768 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
3223 CCAGCTAGAG
Statistics
Matches: 1500, Mismatches: 152, Indels: 81
0.87 0.09 0.05
Matches are distributed among these distances:
878 44 0.03
879 211 0.14
880 61 0.04
881 48 0.03
882 334 0.22
883 85 0.06
885 1 0.00
887 1 0.00
889 2 0.00
891 1 0.00
893 2 0.00
895 330 0.22
896 133 0.09
897 1 0.00
898 3 0.00
899 108 0.07
900 135 0.09
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (890 bp):
CCGTAACCATCGGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
GAAACGACGGGGGCGGGCACTACGCCGGCCAGAGAGGCGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTAGGTTTACGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTTAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGCCCCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
GTGCCCCGAGCAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCC
TCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCAGACCGGAGGGGTAGGATGAGCAA
GCCAGGGATCGATCGGGTCCCCCCTACATACTGTCGATCCTACTA
Found at i:3831 original size:26 final size:26
Alignment explanation
Indices: 3821--3880 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
3811 GCAATTAACC
3821 CCGTATGCTTAGACTGGGAATGAACT
1 CCGTATGCTTAGACTGGGAATGAACT
3847 CCGTATGCTTAGACTGGGAATGAACT
1 CCGTATGCTTAGACTGGGAATGAACT
3873 CCGTATGC
1 CCGTATGC
3881 CTAAGTCAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (26 bp):
CCGTATGCTTAGACTGGGAATGAACT
Found at i:5650 original size:26 final size:26
Alignment explanation
Indices: 5614--5666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5604 CTGGTCTGAT
5614 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
5640 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
5666 C
1 C
5667 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:6116 original size:899 final size:893
Alignment explanation
Indices: 3342--7262 Score: 4870
Period size: 899 Copynumber: 4.4 Consensus size: 893
3332 TTATTTTCTA
* ** * *
3342 TTTTTACGGTTCGAATTTTTTTAAAATTTTTTTGCAAGTAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGATTTTTTTAAAATTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACA
* *
3407 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * * *
3472 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGTTACAGGCTGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
3537 AAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
3602 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTCCGCTCGCCCCAA
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCC-CCGC-CCCCCCAA
* * * * * *
3667 TCGTCGAAACGCTAATGCCGCCGGTCAGGTTCTCCTGCA-ATGCTCC-AGCGATGGTGCCCCAGG
320 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GGAGATGCTCCGA-CGATGGTGCCCCGGG
* * *
3730 CGAAAAATAAATGTGGCACAAGCACATGCCCGAGCCCAGTATGTGC-ACC-TACAACCCTCGGTC
383 CGAAAAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCGT--AACCCTCGGTC
*
3793 TGGTCTGATCTTACATTGGCAATTAACCCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTA
445 CGGTCTG-------A-T--C---T-------TA--C----ACTGGGAATGAACTCCGTATGCTTA
* *
3858 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGTTCA-ACCGG
484 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGA-CGG
* * * * * *
3922 CCAAAGGGGCAGG--ATGCATAAACCGGGGATC-AGCCGGG-ACCCCCTACATGCCGCCAATCTT
548 CCAGAGGGGCAGGATATGC--AAGCCGGGGATCGA-TCGGGTCCCCCCTACGTGCTGCCAATC-T
** * * * * * *
3983 GCTGCTGCAACCCTCGGTTCGATCCAAACTTAGATTGGCAATGAACTCTGTATGCCTAAGCCAAC
609 GCTGCCACAACCCTCGGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
4048 TGACAAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGAAGCGCAAGCCGTGGAT
674 CGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
4113 CGATAGGGTGGCAGG-GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
739 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
4177 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
804 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
4242 TTCTATTTTTCACGATTTTTAAAAA
869 TTCTATTTTTCACGATTTTTGAAAC
* * *
4267 TTTTTACGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAATTTTGGTCCCAAACTTGGTAGAC
1 TTTTTACGGTTCG-GA-TTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
4332 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
64 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
4397 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTGATGGCTACTGGTAGCAAACTTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4462 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGGTGAGGGATAGGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* *
4527 TATAATGGCCAAGTACCAGC-CCCTATCGCACATCATGTGCGCACACCCCCCGCCCCCTCAATCG
259 TATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCG
* * * *
4591 TTGGAA---C-A--CCGTCGGTCAGGTTCTTC-GACGATGCTCCGACGATGGTCCCCCGTGCGAA
323 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGA-GATGCTCCGACGATGGTGCCCCGGGCGAA
* ** * *
4649 AAAAAATACGGCACCAGCACATGCCTTAGCCCAGCATGTGCACCCGTAATCCTCGGTCCGGTCTG
387 AAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCGTAACCCTCGGTCCGGTCTG
* * *
4714 ATCTTACACTAGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
452 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
4779 CCACGAAACTAGCGTGCGGGCGCTCAG-CTGGCCCGAGGGGCA-GA-ATGCACAAGCCGGGGATC
517 CCACGAAACGAGCGTACGGGCGCTCAGAC-GGCCAGAGGGGCAGGATATG--CAAGCCGGGGATC
* ** * * **
4841 TG-TCGGGTCCCTCCATACGTGCTGCTGATCCTGCTACCACAACCCTTGGTTCGGTCAGATCTTA
579 -GATCGGGTCCC-CCCTACGTGCTGCCAAT-CTGCTGCCACAACCCTCGGTTCGGTCCTATCTTA
* *
4905 -ACCTGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTGGGCACTACG
641 GA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACG
*
4969 CCGGCCAGAGAGGCGGGAGGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
705 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
5034 TTCATATTTCTTCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
770 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
5099 CTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCATGATTTTTGAAAC
835 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
5158 TTTTTAGGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGAC
1 TTTTTACGGTTC-GGATTTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
5222 ATGATCCTTGTATTTTTGTTGGCATGCACAAATAAATTCAGGTAAAAACTCAAAGTGTACAGGAT
64 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * *
5287 TTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTA
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
5352 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* *
5417 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCTGCCCCCCCATTC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GCCCCCCCAATC
*
5482 GTCGGAACCCCAATGCCGTCGATCAGGTTCTCCAGGAGATGCTCCGACGATGGTGCCCCGGGCGA
322 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GGAGATGCTCCGACGATGGTGCCCCGGGCGA
* * * *
5547 AAAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCATGTGCAACCGTAACCCTC-GTCTGGTCT
386 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCGTAACCCTCGGTCCGGTCT
* *
5611 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAA
451 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
5676 CCCATGAAACGAGCGTACGGGCGCTCAGACGGCCAG-GCGGGCAGGATATGGAAGCCGAGGATCG
516 CCCACGAAACGAGCGTACGGGCGCTCAGACGGCCAGAG-GGGCAGGATATGCAAGCCGGGGATCG
* * * **
5740 ATCGGGTCCCCCCCTTATGTGCTGTCGATCATGCTGCCACAACCCTCAATTCGGTCCTATCTTAG
580 ATCGGGT-CCCCCC-TACGTGCTGCCAATC-TGCTGCCACAACCCTCGGTTCGGTCCTATCTTAG
* * * ** * * * * * **
5805 ACTAGGAATGAACTCCGTATGCCTAATCCAACTGATGAAATGAACAGGCAGGCAGGCACTACATC
642 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGCC
* *
5870 GACCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
707 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * ** *
5935 TATATTTCTGTCATGCCAATGCCATTTTTATTTCTTTTAAATTCATACAATGGTCCCTTAAGCCT
772 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
6000 TCATGTG-AGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAAC
837 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
6056 TTTTTACGGTTTAGGATTTTTTTAAAATTCTTTCAGAAGGTGTTTTGGCCCCACACTTGGTAGAC
1 TTTTTACGG-TTCGGATTTTTTTAAAATT-TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
6121 ATGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAGGAT
64 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
6186 TTTGTGACCAGTTGAAAAAAGTGTCCCCATTCCAGACACTTTAACGGCTACTGGCAGCAAACTTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
6251 TAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
6316 TATAAGGGCCAAGTTCCAGCACCCATCACACATCACGTGCGAACACCCCCCGCCCCCCCAATCGT
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGT
* * * * * * * * * **
6381 TGGAACGCCAATGCCGTTGGCCAAGTTGTCCGGTGATGCTCAGGCGATGGTGCCTTGGGCGAAAA
324 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGAGATGCTCCGACGATGGTGCCCCGGGCGAAAA
* * * * * * *
6446 AAAATGCGACACCAGCACATGTCTGAGCCCAGCATGTGCACCCGTAACCCTCAGTCCAGTTTGAT
389 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCGTAACCCTCGGTCCGGTCTGAT
* * * *
6511 CTTATACTGGAAAAGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
454 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *** *
6576 ACGAAACAAGTGTGCGGGTGCTCAGCCGGCTAGAGGGGCAGCATGCACAAGCCGGGGATCGGTCG
519 ACGAAACGAGCGTACGGGCGCTCAGACGGCCAGAGGGGCAGGATATGCAAGCCGGGGATCGATCG
* *** * *
6641 GGTCCCCCCTACGTGCTACCAATTCTGCTGCTGTAACCCTTGGTCCGGT-CTGATCTTAGACTGG
584 GGTCCCCCCTACGTGCTGCCAA-TCTGCTGCCACAACCCTCGGTTCGGTCCT-ATCTTAGACTGG
* * *
6705 GAATGAACTCCGTATGCCTAAGCCAACCGA-ATAAACGAGTGGGCGGACGGGCACTAGGCCGGCC
647 GAATGAACTCCGTATGCCTAAGCCAACCGACA-AAACGAGCGGGCGGGCGGGCACTACGCCGGCC
* *
6769 AGAGAGGCGGGATGCGCAAGCCGTGCATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTCATA
711 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
6834 TTTTTACCATGCCAATGCCATTTTTAT-GC---------C-T----T-G-----TAA--ATTCAT
776 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
6876 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
841 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
6929 TTTTTACGGTTCGAGATTTTTTAAAAAAATTTTCAGAACGAGTTTTGGCCCCACACTTGGTAGAC
1 TTTTTACGGTTCG-GATTTTTT-TAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
6994 ATGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
64 ATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
*
7059 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCT
128 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
7124 GTAAAATCTCAAATACTTTTTAAGGAGATGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCA
193 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
7189 ACATAAGGGCCAAGTAGCAGCACCCATTGCACATCATGTGCGCATACCCCCCTG-CCCCCCAATT
258 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCAATC
7253 GTCGGAACCC
322 GTCGGAACCC
7263 ATGAACTCTG
Statistics
Matches: 2644, Mismatches: 297, Indels: 161
0.85 0.10 0.05
Matches are distributed among these distances:
872 11 0.00
873 109 0.04
874 235 0.09
875 1 0.00
879 1 0.00
880 1 0.00
884 1 0.00
885 1 0.00
887 2 0.00
888 106 0.04
889 3 0.00
890 388 0.15
891 168 0.06
892 18 0.01
894 5 0.00
895 172 0.07
896 83 0.03
897 161 0.06
898 229 0.09
899 541 0.20
900 6 0.00
901 1 0.00
904 1 0.00
906 1 0.00
907 1 0.00
913 1 0.00
914 48 0.02
915 44 0.02
916 2 0.00
917 1 0.00
921 13 0.00
922 4 0.00
923 4 0.00
925 16 0.01
926 249 0.09
927 16 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (893 bp):
TTTTTACGGTTCGGATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGGAGATGCTCCGACGATGGTGCCCCGGGCGAAAAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCGTAACCCTCGGTCCGGTCTGATCT
TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCGCTCAGACGGCCAGAGGGGCAGGATATGCAAGCCGGGGATCGATCGGG
TCCCCCCTACGTGCTGCCAATCTGCTGCCACAACCCTCGGTTCGGTCCTATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
Found at i:7300 original size:26 final size:26
Alignment explanation
Indices: 7263--7354 Score: 166
Period size: 26 Copynumber: 3.5 Consensus size: 26
7253 GTCGGAACCC
*
7263 ATGAACTCTGTATGGTTAGACTGGGA
1 ATGAACTATGTATGGTTAGACTGGGA
7289 ATGAACTATGTATGGTTAGACTGGGA
1 ATGAACTATGTATGGTTAGACTGGGA
*
7315 ATGAACTCTGTATGGTTAGACTGGGA
1 ATGAACTATGTATGGTTAGACTGGGA
7341 ATGAACTATGTATG
1 ATGAACTATGTATG
7355 CCTAAGTCAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (26 bp):
ATGAACTATGTATGGTTAGACTGGGA
Found at i:8991 original size:893 final size:894
Alignment explanation
Indices: 7441--16138 Score: 10492
Period size: 893 Copynumber: 9.8 Consensus size: 894
7431 CTCTCGGTCC
7441 GGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * *
7505 CGGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
7570 TTAGGCATATCTTCATATTTCTACCATGCCAAAGCCATTTTTATGGCTTGGAAATTCATACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
7635 GTCCCTTAAGCCTTCATGTGAAGTTCCATGGCAAGACCACTCGTTTTCTACTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
7700 GAAAGTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCACACTTG
261 GAAA-CTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGG
* * *
7764 GTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAACATTCAGCTAAAAACACGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
7829 CAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGATACTGGCAGCA
390 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
7894 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
7959 GGTCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCTCCTGCCCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCCCC
* * * *
8024 AATCGCCGGAACCTCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTCCGACGATGGTTCCCCGGG
585 AATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAG
* * * *
8089 TGAAAAAAAATGCAGCACCAGCACGTGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCCGG
650 -CAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTGG
* ** *
8154 TCTGATCTAACACTTCAAATGCACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
714 TCTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * * * *
8219 CAAGCCATGAAATAAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGTTGGATGCGCAAGCCGGGGAT
779 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGAT
* * * * *
8284 CGATCGGGCCCCCCTATGTGCTGTCGATCCAGCTTCCACAACCTTCAGTCT
844 CGACCGGGCCCCCCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCT
* * * **
8335 GGTCTGATCTTAAACTGGGAATAAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * *
8400 C-GGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCCTAGATCGTTAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
8464 TTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
8529 GTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
8594 GAAACTTTTATGGTTCGGGGTTTTTTTAAAATTTTTTTGA-AAGGATTTTTGGTCCCAAACTGGG
261 GAAACTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGGG
*
8658 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TAAAAAACTCAAAGTGTA
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTA
*
8722 CAGGATTTTGTGACCATTAGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGC
390 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGC
* *
8786 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAAGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
8851 GGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTCGCCC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-CGCCC
* * ** *
8916 CACAATCGTCGGAACCCCAACGTTGTCGGTCAGGTTCTCTGGCGATACTCCGACGATGGTGCCCC
583 C-CAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCC
** * * *
8981 GAGCAAAAAAAAATGCAGCACCAGCATGTGCCCAAGCCCAGCATGTGCACCCGTAACGCTC-AGT
647 GAGC-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA-T
* ** *
9045 CTGGTCCGATCTTACACTTCAAATGCACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCT
710 CTGGTCTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * * *
9110 AAGTGAAACCACGAAACAAGCGTACGGGCACCCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGG
775 AAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGA
* * *
9175 GGATCGACCGGG-CCCCCTATGTGCTGTCGAT-CTAGCTGCCACAACCCTCAGTCC
840 GGATCGACCGGGCCCCCCTATGTGCTGCCGATCCT-GCTACCACAACCCTCAGTCT
* * *
9229 AGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
9293 TGGGCACTACACCAGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGTTAGGGTGGTAGGT-GGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
9357 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
9422 GTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCATGATTTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
9487 GAAACTTTTACAGTTTGAGGTTTTTTTCAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAATTGGG
261 GAAACTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGGG
* * *
9551 TAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCAAAAAACTCGAAGTGTAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
9616 AAGATTTTGTGACCGTTTG-AAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGCA
391 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCA
*
9679 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
9744 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGCCCCT
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCG-CCC-
* * * *
9808 CCAATCGTCGGAACCCCAATGTCATCGGTCAGGTTCTCTGGCGATACTCCGACGATGGTG--CC-
583 CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCG
* *
9870 --C-------A---AG---C--C-CAT----------A--ATGTGCATCCGCAACCCTCGGTCTG
648 AGCAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTG
** *
9905 GTCTGATCTTACACTTCAAATGCACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
713 GTCTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * *
9970 TCAAACCACGAAACAAGCGTGCGGGCGCTCAGCCGGCGAGAGGGGTAGGATGCGCAAGCCAAGGA
778 TCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGA
* * * *
10035 TCGACCGGGCCCCCCTATGTGCTACCGAT-CTAGCTGCCACAACCCTCAATCC
843 TCGACCGGGCCCCCCTATGTGCTGCCGATCCT-GCTACCACAACCCTCAGTCT
* * *
10087 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * *
10152 CGGCCACTACTCCGGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGTTAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
10217 TTAGGCACATCTTCACATTTTTGCCATGCCAATGCCATTTTTATGGCCTCTAAATTCATGCAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
10282 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTACTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
10347 TAAACTTTTACAGTTCGAGGTTTTTTGAAAATTTTTTT-GGAAGGATTTTTGGCCCCAAATTGGG
261 GAAACTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGGG
* *
10411 TAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
10476 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGTAA
391 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
10541 ACCTATAAAATCTCAATTGCTTTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGACAGGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
10606 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCAC-CCCCCA
521 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCCCCA
*
10670 ATCGTCGGAACCCCAATGCCGTCGGTCAGG---T-T-----T--TCCGACGATGGTGCCCCGAGC
586 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAGC
* * * * * * * * *
10724 GAAAAAAAATACGGCACCAGCACATGCTCGAGCCTAGTATGTGCACCTGTAACCCTTGATCTGGG
651 -AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGT
** * * * *
10789 CCAATCTTACACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
715 CTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * **
10854 AACCCACGAAACGAA-CGTGCGGGCGGTCAGTCGACTAAAGAGGTAGGATGCGTAAATCGAGGAT
780 AACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGAT
* * * * * **
10918 CAATCGGGTCCCCCC-CTGCATCCTGCCGATCCTGCTACCATAACCCTTGGTCT
844 CGACCGGG-CCCCCCTATG--TGCTGCCGATCCTGCTACCACAACCCTCAGTCT
* * * * * * * *
10971 GATCTGATCTTAGATTAGGAATTAAGTCTGTATGCCTAAGCCAACCGGA-GAAACGAACGGGCAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-GACGAAACGAGCGGGCGG
* * * * * *
11035 GCGAGCACTACACCGGCCAGAGAGAC-GCATTGCGCAAGCCGTGGATCGATAGGGTGATAGGTGG
65 GCGGGCACTACGCCGGCCAGAGAGGCGGGA-TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
11099 GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAA
129 GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
11164 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
194 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* ** *
11229 TTGAAAAATTTTATAGTTCGAGA-TTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
259 TTG-AAACTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
11293 TGGTAGACATGATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAT
323 GGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
11357 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCA
387 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
11422 ACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTCTGATGATGGCTA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
11487 TGGGGCCAATATAAGGGACAAGTAGCAGCACCCATCGCACATCATGTGCG--CA----CGCC-CC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCC
* * *
11545 CCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGACGAAGCTCC-AGCGATGGTGCCC
582 CCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGA-CGATGGTGCCC
* * * * *
11609 CGAGCAAAAAAAAAATTCAACACCAGCACATGCCCGAGCCCAGCTTGTGCACCCACAACCCTCGG
646 CGAGC--AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA
* * *
11674 TCCGGT-TCGATCTTACA-TTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATG
709 TCTGGTCT-GATCTTACACTT-GGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATG
* * * *
11737 CCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCTGTCGGGCAGAGGGGCAGGATGCGCAAGC
772 CCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGC
* * * * * *
11802 CGAGGATC-AGTCGGGTCCCTCCTACGTGCTACCGATCCTGCTACTATAACCCTCCA-TCT
837 CGAGGATCGA-CCGGG-CCCCCCTATGTGCTGCCGATCCTGCTACCACAACCCT-CAGTCT
* *
11861 AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
11926 CGGGCACTACGTCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11991 TTAGGCACATCTTCATATTTTTGCCATGCCAGTGCCATTTTTATGGCTTGTAAATTCACACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
12056 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTC
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
12121 GAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTT-AGAAGGAGTTTTGGCCCCACACTAG
261 GAAAC-TTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGG
* * *
12185 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * * *
12250 CAGGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTACAAATACTTTGATGGCTACTGGCAACA
390 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
12315 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * **
12380 GGCCAATATAAGGGCCAAGTACCAGCACACATCACACATCGTACGCGCACACCCCCCCCGTCCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCG--CCC
* * * * *
12445 CCAATCGCCGAAAGCCCAATGTCGTCGATCAAGTTCTC---C---G----G-CGATGGTGCCCCG
583 CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCG
* * * * *
12499 GGCGAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAACCCTCGATC
648 AGC--AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATC
* * **
12564 TGGTCTGATCTTACA-TTGGGAATGAAGTCCGTATGCTTAGACT-GGAAATGAAC-CTTATATGC
711 TGGTCTGATCTTACACTT-GGAATGAACTCCATATGCTTAGACTAGG-AATGAACTC-CGTATGC
* * * * * **
12626 CTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCTAGAGGGGCAGGATGCACAAGTT
773 CTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCC
* * * * * * *
12691 GGGGATC-AGCCAGGTCCCCCCTACGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCT
838 GAGGATCGA-CC-GGGCCCCCCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCT
* *
12749 GGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGA----GCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
** * ** *
12809 CGGGCACTACATCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGTTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **** *
12874 TTAGGCACTTCTTCATATTTCTATTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
12939 GTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAAGATTTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
13004 GAAACTTTCTACGGTTCGGGATTTTTTTTAAA-TTTTTTCAGAAGAAGTTTTGGCCCCAAACTAG
261 GAAACTTT-TACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGG
* * *
13068 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAATTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
13133 CAGGATTTTGTGGCAAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGC
390 CAGGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
13198 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
13263 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCTCGTCCC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCG--CC
* * ** *
13327 CCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCC
582 CCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCC
* * ** * ** * * *
13392 GGGCGAAAAAAAATGCGGCACCAGCACATGCTTGAGTCCAGCATGCACACCCGTAGCCCTCGGTC
647 GAGC-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATC
* * * *
13457 CGGTCCT-ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
711 TGGT-CTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * * * * *
13521 AAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTCGACTAGAGGTGCAGGATGCGCAAGCC-A
775 AAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGA
* * * *
13585 GGGATTGACCGGGTCCCCCCT-TGTATGCTGCCAATCCTACTACCACAACCCTCAGTCG
840 -GGATCGACCGGG-CCCCCCTATG--TGCTGCCGATCCTGCTACCACAACCCTCAGTCT
* * * *
13643 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCAAACCGACGAAATGAGCGGGCAGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
13708 CGGGCACTACGCCGGCCTGAGAGACGGGATGGGTAAGCCGTGGATCGATAGGGTGGTAGGTGGAT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
13773 TTAGGCACATCTTCATA-TTTT----TGCC--T----TTTTTATGGCTTGTAAATTCATACAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
13827 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTC
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
13892 AAAACTTTTAACAGTTCAAGATTTTTTTAAAA-TTTTTTCAGAAGGATTTTTGGCCCCACAA-TT
261 GAAACTTTT-ACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCA-AACTG
* * * *
13955 GGTATAAGAT-ATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
324 GGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
14019 TATAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCTTTTTAGACACTTTAATGGCTGCTGGCAG
388 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
14084 CAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
14149 GGGGCCAATATAAGGGCCAAGCACCAGCACCAATCGCACA-CTATGT--GCACACACCCCCTGCC
518 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-ATGTGCGCACACCCCCCCCGCC
* * * *
14211 ACCAATCACTGGAACCCCTAA-GCCG-CTAGTCAGGTTCTC---CG--G-T-----GATGGTGCC
582 CCCAATCGCCGGAACCCC-AATGCCGTC-GGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
* * ** * *
14263 CTGGGCGAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGG
645 CCGAGC-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA
* * * * * *
14328 TCCGGTCCGATCTTACACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCTGTATGCC
709 TCTGGTCTGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCC
* * * * * * ** * *
14393 TAAGTCAA-CCACGAAACGAGTGTGCAGGCGCTCAGCTGGCAAGAGGGGCACCATGCACAGGCCG
774 TAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCG
* * * * ** * *
14457 AGCATCAACCAAGTCCCCCCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCT
839 AGGATCGACC-GGGCCCCCCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCT
* ** * * *
14514 GGGCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAATCGACGAAACGAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * **
14579 CGGGAACTACGCCGACCAGAGAGGTGGGATGCGCAAGTAGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * *
14644 TTTGGCACATCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTCGTAAATTCGTATAATG
131 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14709 GTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTTCAC-ACTTT
196 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC-TATTTTTCACGA-TTT
* *
14773 TTGAAACTTTTTAAGGTTCGAGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGGCCCAAACA
259 TTGAAAC-TTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAAC-
* *
14837 T-GGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
322 TGGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14901 GTACAGGATTTTATGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
387 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
14966 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
15031 GGGGGCCAATATATGGGCCAAGTA--AGCACCCATCACAACATCATGTGTGCACACCCCCGCC-A
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCCCGC
* * * * * * *
15093 ACCCAATCGCTC-CAAACCCAATGCCGTCGAATCAGGTTCTC-CGCGATGGT--G-CCATCGGT-
581 CCCCAATCGC-CGGAACCCCAATGCCGTCG-GTCAGGTTCTCTGGCGATGCTCCGACGAT-GGTG
* * * *
15152 ----GA--AAAAAAAATTGTGACCAACCAGCACATGCTCGAGCCCTGGCATGTGCACCCCCGTAA
643 CCCCGAGCAAAAAAAA-TG-CAGC-ACCAGCACATGCCCGAGCCC-AGCATGTGCA--CCCG---
* * *
15211 CAACCCTCGAATCTGGTCCGATCTTACA-TTGGGAATGAACTTCGTATGCTTAGACTAGGAATGA
699 CAACCCTCG-ATCTGGTCTGATCTTACACTT-GGAATGAACTCCATATGCTTAGACTAGGAATGA
* * * *
15275 ACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA-CATCGGCCAGAGGGGTA
762 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC--CGGCCAGAGGGGTA
* * * * * ****
15339 GGACTGCGCAAGTCGAGGATCGATCGGGTCTCCCCTACGTGCTACCGATCCTGCTGTTGCAACCC
825 GGA-TGCGCAAGCCGAGGATCGACCGGG-CCCCCCTATGTGCTGCCGATCCTGCTACCACAACCC
15404 TCAGTCT
888 TCAGTCT
** * * * * *
15411 GGTCCAATCTTAGAGTAGGAATGAACTCCGTATGCCTAAGCC-ATCGACGGAAACGAGTGGGTGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAAACGAGCGGG-CG
* **
15475 GGCGGGCGGACTACGTCGGCCAGAGAGGTAGGAT-TGCAAGCCGTGGATCGATAGGGTGGTAGGT
64 GGCGGGC--ACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
15539 TGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
127 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
15604 AATGGCCCCTTAAGCCTCCATGTAAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAAT
192 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
15669 TTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTT-AGAAGGAGTTTTGGCCCCAAA
257 TTTTGAAAC-TTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAA
** * *
15733 CAT-ATTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
321 C-TGGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
15797 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
385 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
15862 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATAAGGGA
450 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
15927 TAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACC-
515 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCG
* * ** *
15991 CCCCTAATCGCTGGAACCCCAATGCCG-C---C--G--CTC--AAG-TTCTCCGACGATGGTGCC
580 CCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
* * * ** *
16045 CTG-GACGAAAAAAAATACGGCACCAGCACATGCATGAGCCCAGCATGTGCACCCGTAACCCTCG
645 CCGAG-C-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCG
*
16109 GTCTGGTCTGATCTTACAC-TGGAATGAACT
708 ATCTGGTCTGATCTTACACTTGGAATGAACT
16139 ACGTATGCCT
Statistics
Matches: 6831, Mismatches: 758, Indels: 437
0.85 0.09 0.05
Matches are distributed among these distances:
848 13 0.00
850 3 0.00
853 1 0.00
855 1 0.00
856 1 0.00
857 151 0.02
858 95 0.01
859 95 0.01
860 269 0.04
861 147 0.02
862 9 0.00
864 1 0.00
867 1 0.00
869 2 0.00
870 4 0.00
871 156 0.02
872 60 0.01
873 135 0.02
875 2 0.00
876 3 0.00
878 3 0.00
879 37 0.01
880 1 0.00
881 11 0.00
882 229 0.03
883 634 0.09
884 479 0.07
885 270 0.04
886 10 0.00
887 216 0.03
888 468 0.07
889 25 0.00
890 549 0.08
891 257 0.04
892 177 0.03
893 720 0.11
894 497 0.07
895 362 0.05
896 24 0.00
897 100 0.01
898 291 0.04
899 289 0.04
900 33 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTGGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCCCCA
ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAGC
AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTC
TGATCTTACACTTGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCG
ACCGGGCCCCCCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCT
Found at i:10830 original size:26 final size:26
Alignment explanation
Indices: 10794--10846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10784 CTGGGCCAAT
*
10794 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
*
10820 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
10846 C
1 C
10847 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13495 original size:26 final size:26
Alignment explanation
Indices: 13466--13518 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13456 CCGGTCCTAT
13466 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13518 C
1 C
13519 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19626 original size:26 final size:26
Alignment explanation
Indices: 19586--19638 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19576 CTGGTCCGAT
* *
19586 CTTACACTGGTAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
19612 CTTAGACTGGGAATGATCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19638 C
1 C
19639 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20518 original size:26 final size:26
Alignment explanation
Indices: 20478--20530 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20468 CTGGTCCGAT
* *
20478 CTTACACTGGTAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
20504 CTTAGACTGGGAATGATCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20530 C
1 C
20531 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:21415 original size:26 final size:26
Alignment explanation
Indices: 21379--21431 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21369 CCAGTCTAAT
* *
21379 CTTACACTGGGAATGAACTCGGTATG
1 CTTACACTGGGAACGAACTCCGTATG
* *
21405 CTTAGACTGGGAGCGAACTCCGTATG
1 CTTACACTGGGAACGAACTCCGTATG
21431 C
1 C
21432 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAACGAACTCCGTATG
Found at i:21643 original size:901 final size:893
Alignment explanation
Indices: 16306--22327 Score: 7694
Period size: 893 Copynumber: 6.8 Consensus size: 893
16296 TCCGTATGGT
* * * * *
16306 GCAAGCCATGGATTGATAGGGTGGTAGGTGTGTTTAGGCACATCTTTATATTTCTACCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
16371 TGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* ** * *
16436 AAGACGACTCGTTTTCTTTTTTTTCACGATTTTTGAAACTTTTTAAGGTTTGA-GATTTTTTTAA
131 AAGACGACTCG-TTTC-TATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAGGATTTTTTTAA
* * * * *
16500 AATTTTTTTAGAAGGAGTTTTGGGCCCAAACATGGTAGACGTGATCCTTTTATTTTTTTTGGCAT
194 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* *
16565 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTC
259 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
16630 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
16695 TGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
16760 TAGCACATCGTGTGCGCACAACCCCCCCGCCACCCAATCGTCAGAACCTCAATGCCGTCGGTCAG
454 TCGCACATCATGTGCGCAC-A-CCCCCCGCCCCCCAATCGTCGGAACC-CAATGCCGCCGGTCAG
* ** * *
16825 GTTCTTCGATGATGCTCCGACGATGGTGCCCCGGGC-AAAAACAAATGTGGCACCAGCACATGCC
516 GTTCTTCGGTGATGCTCCGGTGATGGTG-CCCGAGCGAAAAA-AAATGCGGCACCAGCACATGCC
* * * *
16889 CTAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCAATCTTACACTGGGAATGATCTCCGT
579 CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT-CGT
* * * ** * **
16954 ACGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGCAGGTGCTC
643 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* ** * * * * * * * * * *
17019 AACCGGCCAAAGGGGCAGAATGCACAAGCTGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCAA
708 AGCATGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGTTGCCGA
* * * ** * * *
17084 TCCTACTGCCGTGACCCTC-GATCCAATTCGATCTTAGACTGGGAATAAAC-TCTGTATGCCTAA
773 TCCTGCTACTGCAACCCTCAG-TCCAGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAA
* * * * * * *
17147 GCCAACCAATGAAATGAGCAGGCAGGCGGGCACTACG-TCGGGCAGCGAGGCGGGATGC
836 GCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCAGGATGC
* *
17205 GTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTAG-CATGCCA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCA
* *
17269 ATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTCTCATGG
65 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * ** *
17334 CAAGATGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGG-TTC-GAGATTTTTTAA
130 CAAGACGACTCG-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAG-GATTTTTTTA
** *
17397 AAATATTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTCATATTTTTGTTGGC
193 AAAT-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGC
* * * *
17461 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGGG
257 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
* * * *
17526 TCCCCATTCCAGGCACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
322 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
17591 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACC
387 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
17656 CATCGCACATCATGTGCGCACACCCCCCGGCCCTCCAATCGTCGAAACCCCAATTCCGTCGGTTA
452 CATCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATCGTCGGAA-CCCAATGCCGCCGGTCA
* * ** *
17721 GGTTCTCCGGTGATGCTGCGACGATGGTGCCCTGGGC-AAAAAAAATGCGGCACCAGCACATGCC
515 GGTTCTTCGGTGATGCTCCGGTGATGGTGCCC-GAGCGAAAAAAAATGCGGCACCAGCACATGCC
* * * * * *
17785 CAAGCCCAGCATGTGCACCCGTAACCC-CTGATCTGGTCTGATCTTACACTGGGGATGAACTCCG
579 CGAGCCCAGCATGTGCACCCGCAACCCTC-GGTCCGGTCCGATCTTACACTGGGAATGAACT-CG
* * ** *
17849 TATGCTTAGACTGAGAATAAACTCTATATGCCTAAGTCAACCCAAGAAACGA-------GG-A-T
642 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
17905 --GCA---CA-A---GC----T---------GGGGATCGGTCGGGTCCCCCCCT--ATGTGCTGC
707 CAGCATGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGT--TGC
* * * *
17946 CGATCCTGCTAC-GACAACCCTCCA-TCCAGTCCAATTTTAGACTAGGAATGAACTCCGTATGCC
770 CGATCCTGCTACTG-CAACCCT-CAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCC
* * * * * * * *
18009 TAAGCCAACTGATGAAACGATCGGGCGGGCGGGCACT-TGCCGGCCAGAGAGACGGGATGC
833 TAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAGGATGC
* ***
18069 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGCGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
18134 TGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAGGCCTTCATGTGTAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
18199 AAGACGACCCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTTCGG-TTCAGGATTTTTTTAAT
131 AAGACGACTCG-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAGGATTTTTTTAAA
* *
18263 ATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTATG
195 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG
18328 CATC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
260 CA-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
18392 CCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
18457 GGTGTGAGTTC-CTGAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCC
389 GGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
18521 ATCGCACATCATGTGTGCACACCACCCCCGGCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCA
453 ATCGCACATCATGTGCGCACA-C-CCCCCGCCCCCCAATCGTCGGAA-CCCAATGCCGCCGGTCA
* ** * * * *
18586 GGTTCTTTGACGATGCTCCGGTGATGGTGCCCTAAGAGAAAAAAAATGTGGCACCAGCACATTCC
515 GGTTCTTCGGTGATGCTCCGGTGATGGTGCCC-GAGCGAAAAAAAATGCGGCACCAGCACATGCC
* * * *
18651 CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACATTGGGAATGAACTCCTA
579 CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCGTA
* * *
18716 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCA
644 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
18781 GTC-GGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCAGTCGGGTCCCCCCCGGCGTGCTACTGA
709 G-CATGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGTTGCCGA
* * *** * * * * * * *
18845 TCCTACTGCCATAACCCTCAGTCCAGTCTGATGTTACACTGAGAAAGAACTTTGTATGCCTAAGT
773 TCCTGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
* ** *
18910 CAACCGATGAAATGAGCGGGTAGGCGGGCACTACG-TCGGCCAGAGAGGCGGGATGC
838 CAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCAGGATGC
* * *
18966 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
19031 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
19096 AAGACGACTCGTTTTCTA-TTTTCGATGACTCTCAAAACTTTTTACGGTTTGA-GATTTTTTTAA
131 AAGACGACTCG-TTTCTATTTTTC-ACGATTTTCAAAACTTTTTACGGTTTCAGGATTTTTTTAA
** * *
19159 AACGTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
194 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
*
19224 GCACAAAAAAATTCAGCTAGAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
259 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
19289 CCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * ** *
19354 GGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGTCAAAATAAGGGAAAAGTACCAACACCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
19418 TCACACATCATGTGCGCGCTCCCCCCGCCCCCCAATCGCCGGAACCCCATGCCGCCGGTCAGGTT
454 TCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCAATGCCGCCGGTCAGGTT
* * *
19483 CTTCGGTGATGCTCCGGTAATGGTGCACCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAG
519 CTTCGGTGATGCTCCGGTGATGGTGC-CCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
19548 CCCAGCATGTGCACCTGCAACCCTCAGTCTGGTCCGATCTTACACTGGTAATGAACTTCGTATGC
583 CCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC-TCGTATGC
*
19613 TTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCA
647 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCA
* * * * *
19678 TGCCAGAGGGGCAAGATGTGCAAGTCGGGGATCGGCCGGGT-CCCCCCTGCATGTTGCCAATCCT
712 TGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGTTGCCGATCCT
* * *
19742 GCTACTGCAGCCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTAAGCCTAAGCCAAC
777 GCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
*
19807 CGACGAAATGAGCGGGCGGGCGGGCACCACGCTGGCCAGAGAGGCAGGATGC
842 CGACGAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAGGATGC
* ***
19859 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGCGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
19924 TGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAGGCCTTCATGTGTAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
19989 AAGACGACCCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTTCGG-TTCAGGATTTTTTTAAT
131 AAGACGACTCG-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAGGATTTTTTTAAA
* *
20053 ATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTATG
195 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG
20118 CATC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
260 CA-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
20182 CCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * ** *
20247 GGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGTCAAAATAAGGGAAAAGTACCAACACCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
20311 TCACACATCATGTGCGCGCTCCCCCCG-CCCCCAATCGCCGGAACCCCATGCCGCCGGTCAGGTT
454 TCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCAATGCCGCCGGTCAGGTT
* * *
20375 CTTCGGTGATGCTCCGGTAATGGTGCACCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAG
519 CTTCGGTGATGCTCCGGTGATGGTGC-CCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
20440 CCCAGCATGTGCACCTGCAACCCTCAGTCTGGTCCGATCTTACACTGGTAATGAACTTCGTATGC
583 CCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC-TCGTATGC
*
20505 TTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCA
647 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCA
* * * * *
20570 TGCCAGAGGGGCAAGATGTGCAAGTCGGGGATCGGCCGGGT-CCCCCCTGCATGGTTGCCAATCC
712 TGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCAT-GTTGCCGATCC
* * *
20634 TGCTACTGCAGCCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTAAGCCTAAGCCAA
776 TGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
*
20699 CCGACGAAATGAGCGGGCGGGCGGGCACCACGCTGGCCAGAGAGGCAGGATGC
841 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAGGATGC
*
20752 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAC
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
20817 TACCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * ** * *
20882 AAGACGACTCGTAGATGTGATCCTTGT-A-TTTTTTCATGTGAACTTTTTACGGTTTGA-GATTT
131 AAGACGACTCGT--TTCT-AT--TTTTCACGATTTTCA---AAACTTTTTACGGTTTCAGGATTT
* * ** **
20944 TTTAAAAATTTTTTCAGAAGGA-TTTCTAGAACCAAACTTGGTAGATGTGATCCTTGTATTTTTT
188 TTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTT
* **
21008 TTGGCATGCACAAAAAAATTCAGCTAGAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAA
252 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
21073 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
317 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
21138 TAAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
382 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
21203 GCACCCATTGCACATCATGTGCGCACACCCCCTCGCCCCGCCAATCGTCGG-ACCCAATGCCTCC
447 GCACCCATCGCACATCATGTGCGCACACCCCC-CGCCCC-CCAATCGTCGGAACCCAATGCCGCC
* * * * * * *
21267 GGTCAGGTTCTCCGGTAATGCTCTGGCGATGGTGCCTCGAGTGAAAAAAAAAGTGGCACCAGCAC
510 GGTCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCC-CGAGCGAAAAAAAATGCGGCACCAGCAC
* * * **
21332 ATGCCCGAGCCCAGAATGTGCACCCACAACCCTCGGTCCAGTCTAATCTTACACTGGGAATGAAC
574 ATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC
** * *
21397 TCGGTATGCTTAGACTGGGAGCGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCATGCGGG
639 TC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* *
21462 CACTCAGCCA-GCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCCCTGCATGT
703 CACTCAG-CATGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGT
* * ** * *
21526 TGCTGATCCTGCTGCTGCAACCCTCAGTCGGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
767 TGCCGATCCTGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
* * * * *
21591 CTAAGCCAACCAACGAAACGAGCGGACGGGCGGGCACTTCGCTGGACAGAGAGGC-GAGATGC
832 CTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAG-GATGC
* * * * *
21653 GCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATCTCTACCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
21718 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * ** *
21783 AAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGC-GTTTCATAAGTTTTTTAAA
131 AAGACGACTCG-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAGGA-TTTTTTTAA
* * * *
21847 AATTTTTTCAGAAGGAGTTTCGGCCCTAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCAT
194 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
*
21912 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
259 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* *
21977 CCCATTTCAGACACTGTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTC-TTAATGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
22040 GGTGTGAGTTCTTGAGGATTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * ** **
22105 TTGCACATCATGTGCGCACACCCCCCACCCCCCCAATCATCGGAACCCCAATACTACCAATCAGG
454 TCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATCGTCGGAA-CCCAATGCCGCCGGTCAGG
* ** * *
22170 TTCTCCGGCAATGCTCCGATGATGGTGCCCTAGGCG-AAAAAAATGCGGCACCAGCACAT-CCCG
517 TTCTTCGGTGATGCTCCGGTGATGGTGCCCGA-GCGAAAAAAAATGCGGCACCAGCACATGCCCG
* * * *
22233 AGCCCAAGCATGTGCA-CCGTAACCCTCGATCCTTGGTCCAAT-TTACACTGGGAATGAACTCCA
581 AGCCC-AGCATGTGCACCCGCAACCCTCGGTCC--GGTCCGATCTTACACTGGGAATGAACT-CG
*
22296 TATGCTTAGACTGGGAATGAACTCTGTATGCC
642 TATGCTTAGACTGGGAATGAACTCCGTATGCC
22328 CGTGAGACCA
Statistics
Matches: 4544, Mismatches: 471, Indels: 220
0.87 0.09 0.04
Matches are distributed among these distances:
863 9 0.00
864 440 0.10
865 205 0.05
866 84 0.02
867 1 0.00
872 2 0.00
874 2 0.00
876 1 0.00
877 1 0.00
878 2 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 2 0.00
885 1 0.00
887 2 0.00
889 2 0.00
892 288 0.06
893 937 0.21
894 164 0.04
895 192 0.04
896 357 0.08
897 626 0.14
898 528 0.12
899 196 0.04
900 8 0.00
901 464 0.10
902 24 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTCGTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCAGGATTTTTTTAAAA
TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCAATGCCGCCGGTCAGGTTCT
TCGGTGATGCTCCGGTGATGGTGCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
AGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCATGCC
AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGTTGCCGATCCTGCTA
CTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAC
GAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAGGATGC
Found at i:29725 original size:26 final size:26
Alignment explanation
Indices: 29689--29741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29679 CCGGTCTGAT
29689 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
29715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
29741 C
1 C
29742 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Done.