Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168133.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30156
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Found at i:911 original size:26 final size:26
Alignment explanation
Indices: 875--927 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
865 GTTAACTTAG
875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
901 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
927 G
1 G
928 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1803 original size:26 final size:26
Alignment explanation
Indices: 1767--1819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1757 GTTGACTTAG
*
1767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1793 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1819 G
1 G
1820 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2909 original size:893 final size:891
Alignment explanation
Indices: 1--4288 Score: 5725
Period size: 893 Copynumber: 4.9 Consensus size: 891
* * * * * *
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCATGGGTTACAG
1 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
* * * * **
66 CAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGTCGG
66 CAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
* * * * *
131 AGCATCACTAGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGT
130 AGCATCGC-CGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGT
* * * *
196 GCGCACATGATGTGCGGTGGGTGCTGGTACTTGG-CTATTATATTGGCCTCCTATCCCTCATCAA
192 GCGCACATGATGTACGATGGGTGCTGGTACTTGGTC-CTTATATTGGCCCCCTATCCCTCATCAA
*
260 ACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
256 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
325 TCAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATAT-GAGTTTT
321 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTT
* * * *
389 TAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCGA
385 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
454 AACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATG
450 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA-CATAAAAAGTTTCAAAAATCGTGAAAAATA
* *
519 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
514 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
584 AGCCATAAAAATGGCATTGGC--AC------A--CAGATGTACCTAAACCCACCTACCACACTAT
579 AGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
639 CGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGT
644 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTTGT
* * * * *
704 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGAGTAAGATCGGACCGGACTGA-AGGTTATGGC
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACTGAGA-GTTACGAC
* * * * * *
768 TGCAAGATCGGCAGCACGTAGAGGGGGACCCGATTGATCCCTGGCTTGAGCATCCCGCCCGTCTG
773 AGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTG
* * *
833 GCTGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTT
838 GCCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
887 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGA
1 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
952 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
66 CAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
* * * * * *
1017 AGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGCGATCGAGGGGCCGGGGGGCTGTA
130 AGCATCGCC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTG
* **
1082 CGCACATGATGTACGAT-GGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAATG
193 CGCACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
1146 CTCGAGAACTCACACCCCCTTAAAGAGCTTTTTAGA-TTTACAGGTTTGCTGCCAGTAACCATTA
258 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
1210 AAGTATTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGGTTTTAG
323 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
1275 CTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA
388 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
1340 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCATGAAAAAT-AAA
453 TCCTTCCAAAAAAATTTTAAAAAATCCCGAAC-ATAAAAAGTTTCAAAAATCGTGAAAAATAAAA
*
1404 AACGAGTCGTCTTGCCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
517 AACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
1469 CCATAAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTAGCACCCTATCG
581 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * ** *
1534 ATCCACGACTTGCG-ATCCCATCTCTCTGGCCGG-AGTAATGCCCGCCCGTCTACTCGTTCTGTC
646 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA-TAGTGCCCGCCCGCCCGCTCGTTTTGTC
* * * *
1597 GGTTGGCTTAGGCATACGGAGTTCATTCCTA-ATCTAAGATCAGACCAGACTAAG-GATTGCGAC
710 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCGGACCAGACTGAGAG-TTACGAC
* * * * ** *
1660 AGTAGGATCAGCAGCACGCAAAAAGGGACCCGGTCGATCCCCGACTTGAGCATCCCGCCCCTCTG
773 AGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTG
* *
1725 GCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTT
838 GCCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
1779 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTACGA
1 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
* * * * ** * * *
1844 CAGAAAATGCTGGGGTCGAGCATGTGCTGGTGCCGCATTTTTC-TTCACTAGGGCACCATCGCTG
66 CAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCACATTTTTCTTTGTC-GGGGCACCATCACCG
* * * * *
1908 GAGCATCACCGGAGAACTTGACCAACGGCATTGGGGTT-TGATGATCGGGGGGGCCGGGGGGTGT
129 GAGCATCGCC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGT
* *
1972 GCGCACATAATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
192 GCGCACATGATGT-ACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAA
*
2036 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
256 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
2101 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTT
321 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
2166 GGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
386 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * *
2231 ACGCCTTCCAAAATATTTTTAAAAAATCTCGAGTCATAAAAAGTTTCAAAAATCATGAAAAATAA
451 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGA-ACATAAAAAGTTTCAAAAATCGTGAAAAATAA
*
2296 AAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
515 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
2361 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
580 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
2426 GATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGTATAGTGCCCACCCGCCCGCTCGTTTTGTC
645 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTTGTC
* * * * * *
2491 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGAGTAAGATCAGATCAGACCGAGAGTTACGGCTG
710 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACTGAGAGTTACGACAG
* * *
2556 CAAGATCGGCAGCACGCAGAGGGAGACCCAGTCGATCCCTGGCTTGAGCATCCCGCCCCTCTGGC
775 CAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGC
* *
2621 CGGCAGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-TAT
840 CGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT-T
* *
2673 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAGGATCGGACCAGACCAAGGGTTGTGG
1 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
*
2738 CAGCACATGCTCGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
66 CAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
*
2803 AGCATCGTCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
130 AGCATCGCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
* * *
2868 CACATGATGTACGATGTGTGTTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAACCT
195 CACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
2933 TGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
2998 GTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
3063 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTC
390 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
3128 CTTCCGAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTTAAAAATCGTGAAAAATAAAAAA
455 CTTCCAAAAAAATTTTAAAAAATCCCGAAC-ATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
* *
3193 TGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
519 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
3258 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
584 TAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
3323 CACGGCTTGCGCATCCCTTCTCTCTAGCCGGCGTAGTGCCCGTCCGCCCG-TCCGCTTGTTTCGT
649 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCT-CG--T-TTT-GT
* ** * * *
3387 CGGTTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATTGGATCAGACTGAGAGTTGCGACA
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACTGAGAGTTACGACA
** * * * * *
3452 ATAGGATCGGCAGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCACCCCTCTGG
774 GCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGG
*
3517 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
839 CCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
3570 CATTCCCAATCTAAG-AT-T-G-G---A----C---C---GA----ACC-G----AGGGTTGTGG
1 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
* * *
3609 CAACACATGCTGGGCTCGAGCATGTGCTAGTGCCACA-TTTTCTTCGTCGGGGCACCAT---C--
66 CAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGG
* *
3668 -GC--CG--GAGAACCTGACCGACGGTATTGGGGTTCC-A-G--C----GACCGGGGGGTGTGCG
130 AGCATCGCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
* * *
3720 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCT
195 CACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
3785 CAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
3850 GTGAT-TGAAATGGGGACACTTTTATCAAATGGTCACAACATGTTGTACACCTCGAGTTTTTAGC
325 GTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
3914 TGAATTTTTTTGTGCACGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGAC-AAACT
389 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
3978 CCTTCCAAAAAAATTTAAAAAAATCCCGAAC-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
454 CCTTCCAAAAAAATTTTAAAAAATCCCGAACAT--AAAAAGTTTCAAAAATCGTGAAAAATAAAA
* * *
4042 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACACGC
517 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
4107 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAACTACCACCCTATCGA
582 CATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
4172 TCCACGGCTTGTGCATCCCGTCTCTGTGGCTGGCGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCG
647 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-CC-GCCCGCCCGCTCGTTTTG
*
4237 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
708 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGAC
4289 CGAGGGTTGT
Statistics
Matches: 3038, Mismatches: 311, Indels: 141
0.87 0.09 0.04
Matches are distributed among these distances:
851 269 0.09
852 244 0.08
853 3 0.00
854 2 0.00
855 9 0.00
856 2 0.00
858 1 0.00
859 1 0.00
860 28 0.01
862 2 0.00
864 2 0.00
867 1 0.00
870 21 0.01
871 42 0.01
875 1 0.00
876 3 0.00
880 2 0.00
882 22 0.01
883 264 0.09
884 80 0.03
885 27 0.01
886 158 0.05
890 1 0.00
891 31 0.01
892 423 0.14
893 874 0.29
894 336 0.11
895 9 0.00
896 5 0.00
897 174 0.06
898 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
CAGCACATGCTGGGCTCGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGGA
GCATCGCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCAAAAAAATTTTAAAAAATCCCGAACATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACTGAGAGTTACGACAGCAAGAT
CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGACAG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
Found at i:3190 original size:26 final size:27
Alignment explanation
Indices: 3134--3193 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
3124 ACTCCTTCCG
*
3134 AAAAAATTTTAAAAAATCCCGAACAAC
1 AAAAAATTTTAAAAAATCCCGAAAAAC
* ** *
3161 AAAAAGTTTT-AAAAATCGTGAAAAAT
1 AAAAAATTTTAAAAAATCCCGAAAAAC
3187 AAAAAAT
1 AAAAAAT
3194 GAGTTGTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.22
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCCGAAAAAC
Found at i:4936 original size:4 final size:4
Alignment explanation
Indices: 4927--4952 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
4917 CCGGCGTAGT
4927 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
4953 TCATTTCGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:6348 original size:535 final size:535
Alignment explanation
Indices: 5314--6366 Score: 1653
Period size: 535 Copynumber: 2.0 Consensus size: 535
5304 TTGGGGTTCC
5314 GGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGATACCTGGCCCTTA
1 GGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGATACCTGGCCCTTA
* * * *
5379 TATTAGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAATAGCATTTGAGATTT
66 TATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTT
5444 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCAC
131 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCAC
*
5509 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGACAACAAAATTACAAGGAT
196 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGACAAAAAAATTACAAGGAT
*
5574 CACGTCTACCAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCCAGACAGCAAA
261 CACGTCTACAAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCCAGACAGCAAA
** * * *
5639 AAGTTTTGAAAATTAGGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTGACGGGAAGGCTT
326 AAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGGGAAGCCTT
*
5704 AAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAATATGAAGATGT
391 AAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAACATGAAGATGT
** * * *
5769 AACTAAACTGACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTGG
456 AACTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTGG
5834 CAGTATTAGGGTTTT
521 CAGTATTAGGGTTTT
* * * *
5849 GGCGAT-GGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
1 GGCGATCGGGGGGGCC-GGGG-GGTATGCGCACATGATGTGCGATGGGTGCTGATACCTGGCCCT
* * *
5913 TATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCACACCCCCTAAAAGAGCATTTGAGAT
64 TATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGAT
*
5978 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTTCAAATGGTC
129 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTC
* * * *
6042 ACAAACTCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATG-CGAAAAAAATTACAAG
194 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGAC-AAAAAAATTACAAG
* ** * * * * *
6106 GATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAGGCCGT
258 GATCACGTCTACAAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCCAGACAGC
* * *
6171 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGATGTGAAGC
323 AAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGGGAAGC
* *
6236 CTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAACATGAAGA
388 CTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAACATGAAGA
** *
6301 TGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
453 TGTAACTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCG
6366 T
518 T
6367 TGTGCCCGCC
Statistics
Matches: 470, Mismatches: 45, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
534 10 0.02
535 316 0.67
536 144 0.31
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (535 bp):
GGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGATACCTGGCCCTTA
TATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGACAAAAAAATTACAAGGAT
CACGTCTACAAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCCAGACAGCAAA
AAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGGGAAGCCTT
AAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAACATGAAGATGT
AACTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTGG
CAGTATTAGGGTTTT
Found at i:7311 original size:26 final size:26
Alignment explanation
Indices: 7281--7333 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7271 GTTGACTTAG
7281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7333 G
1 G
7334 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:8895 original size:58 final size:58
Alignment explanation
Indices: 8652--8999 Score: 515
Period size: 59 Copynumber: 6.0 Consensus size: 58
8642 CTTTGTGTAG
* *
8652 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG-AAATTTATTCTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
8708 GG-AAATTGATACTTTCAACTTTTCCCCAAAAAT-GTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
8764 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* *
8823 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* * * * *
8881 GGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
* *
8940 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTGTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTT-TTT-GAAAATTT-ATTTTTA
9000 TTTAAAGAAA
Statistics
Matches: 268, Mismatches: 16, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
55 28 0.10
56 25 0.09
57 31 0.12
58 67 0.25
59 100 0.37
60 2 0.01
61 15 0.06
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:8903 original size:117 final size:116
Alignment explanation
Indices: 8649--8999 Score: 539
Period size: 117 Copynumber: 3.0 Consensus size: 116
8639 TTTCTTTGTG
*
8649 TAGGGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG-AAATTTATTCTCAAGG-A
1 TAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTCAAGGAA
8711 AATTGATACTTTCAACTTTTCCCCAAAAATG-TTTTTTGAAAATTTATTTT
66 AATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTT
* *
8761 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAAGGA
1 TAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTATTTTCAAGGA
8826 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTT
65 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTT
* * * *
8878 TAGGGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGGA
1 TAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTCAAGGA
* * *
8943 AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTGTTTGGAAATTTTGATTTT
65 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTT-TTT-GAAAATTT-ATTTT
8998 TA
1 TA
9000 TTTAAAGAAA
Statistics
Matches: 218, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
112 26 0.12
113 10 0.05
114 8 0.04
115 14 0.06
116 45 0.21
117 98 0.45
118 3 0.01
119 7 0.03
120 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (116 bp):
TAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTCAAGGAA
AATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTT
Found at i:9026 original size:14 final size:14
Alignment explanation
Indices: 9007--9064 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
8997 TTATTTAAAG
*
9007 AAAATAGAATAATA
1 AAAATAGAAAAATA
9021 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
9035 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
9050 AAAAT--AAAAATA
1 AAAATAGAAAAATA
9062 AAA
1 AAA
9065 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:9034 original size:17 final size:17
Alignment explanation
Indices: 9014--9064 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
9004 AAGAAAATAG
9014 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
9031 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
9049 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
9065 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:9073 original size:17 final size:16
Alignment explanation
Indices: 9051--9090 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9041 AGTAAAACAA
*
9051 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
9067 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
9084 AAATAAA
1 AAATAAA
9091 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:9123 original size:18 final size:18
Alignment explanation
Indices: 9102--9136 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9092 CTAATCTAAT
9102 AAATAAAAAAAAATAAAC
1 AAATAAAAAAAAATAAAC
**
9120 AAATAAATGAAAATAAA
1 AAATAAAAAAAAATAAA
9137 AAAAATTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (18 bp):
AAATAAAAAAAAATAAAC
Found at i:9574 original size:11 final size:11
Alignment explanation
Indices: 9542--9580 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9532 TCTGGGTTTT
9542 TTCACCGGAAG
1 TTCACCGGAAG
* *
9553 TTCGCCAGAAG
1 TTCACCGGAAG
9564 TTCACCGGAAG
1 TTCACCGGAAG
*
9575 ATCACC
1 TTCACC
9581 AGTTTCTGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:10219 original size:3 final size:3
Alignment explanation
Indices: 10211--10255 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
10201 AAAGATATAC
10211 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
10256 CAAAAGAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10556 original size:41 final size:41
Alignment explanation
Indices: 10493--10634 Score: 194
Period size: 41 Copynumber: 3.5 Consensus size: 41
10483 GACCAAAGCC
* * *
10493 CCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* * * *
10534 CCTCTACACAAAGGCACCACGACTTTTGAAAGTAAATTACT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* *
10575 CCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
*
10616 CCTCTAAATAGAGGCACCA
1 CCTCTAAACAGAGGCACCA
10635 AATTGCTCCT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.23
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
Found at i:10637 original size:26 final size:26
Alignment explanation
Indices: 10608--10660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10598 TTTGGAAAGT
*
10608 AAATTGCTCCTCTAAATAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
10634 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
10660 A
1 A
10661 CGACTTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:10693 original size:42 final size:41
Alignment explanation
Indices: 10634--10727 Score: 145
Period size: 42 Copynumber: 2.3 Consensus size: 41
10624 TAGAGGCACC
10634 AAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACC-CGAACTTTGG-AAAGT
* *
10676 AAATTGCTCCTCTAAACAGAGGCATCGGAACTTTGGAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCCGAACTTTGGAAAGT
10717 AAATTGCTCCT
1 AAATTGCTCCT
10728 TGACAATCAT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
41 17 0.35
42 32 0.65
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (41 bp):
AAATTGCTCCTCTAAACAGAGGCACCCGAACTTTGGAAAGT
Found at i:10716 original size:109 final size:108
Alignment explanation
Indices: 10526--10727 Score: 323
Period size: 109 Copynumber: 1.9 Consensus size: 108
10516 TTTGGAAAAT
* *
10526 AAATTGCTCCTCTACACAAAGGCACCACGACTTTTGAAAGTAAATTACTCCTCTAAACAGAGCCA
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTACTCCTCTAAACAGAGCCA
10591 CCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
66 CCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
* * *
10634 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGC
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGG-AAAGTAAATTACTCCTCTAAACAGAGCC
* **
10699 ATCGGAACTTTGGAAAGTAAATTGCTCCT
65 ACCACAACTTTGGAAAGTAAATTGCTCCT
10728 TGACAATCAT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 33 0.39
109 52 0.61
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (108 bp):
AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTACTCCTCTAAACAGAGCCA
CCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
Found at i:11975 original size:16 final size:15
Alignment explanation
Indices: 11954--11999 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
11944 CATTTTCTCA
11954 TTTCTTTCTTCTTTTT
1 TTTCTTTCTT-TTTTT
11970 TTTCTTT-TGTTTTTT
1 TTTCTTTCT-TTTTTT
11985 TCTTCTTTCTTTTTT
1 T-TTCTTTCTTTTTT
12000 CATCATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 7 0.26
16 19 0.70
17 1 0.04
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (15 bp):
TTTCTTTCTTTTTTT
Found at i:11977 original size:28 final size:26
Alignment explanation
Indices: 11937--12012 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 26
11927 TTTGAATCTC
11937 TTTTTTTCATTTTCTCATTTCTTTCTTCT
1 TTTTTTTCATTTTCT--TTT-TTTCTTCT
*
11966 TTTTTTTC-TTTTGTTTTTTTCTTCTT
1 TTTTTTTCATTTTCTTTTTTTCTTC-T
**
11992 TCTTTTTTCATCATCTTTTTT
1 T-TTTTTTCATTTTCTTTTTT
12013 CATTTTTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 7 0.17
26 5 0.12
27 7 0.17
28 13 0.32
29 8 0.20
ACGTcount: A:0.05, C:0.17, G:0.01, T:0.76
Consensus pattern (26 bp):
TTTTTTTCATTTTCTTTTTTTCTTCT
Found at i:11997 original size:13 final size:12
Alignment explanation
Indices: 11958--11998 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
11948 TTCTCATTTC
11958 TTTCTTCTTTTT
1 TTTCTTCTTTTT
*
11970 TTTCTTTTGTTTT
1 TTTCTTCT-TTTT
11983 TTTCTTCTTTCTT
1 TTTCTTCTTT-TT
11996 TTT
1 TTT
11999 TCATCATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (12 bp):
TTTCTTCTTTTT
Found at i:12008 original size:20 final size:20
Alignment explanation
Indices: 11985--12023 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11975 TTTGTTTTTT
*
11985 TCTTCTTTCTTTTTTCATCA
1 TCTTCTTTCATTTTTCATCA
*
12005 TCTTTTTTCATTTTTCATC
1 TCTTCTTTCATTTTTCATC
12024 CGTTGTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (20 bp):
TCTTCTTTCATTTTTCATCA
Found at i:16549 original size:3 final size:3
Alignment explanation
Indices: 16543--16587 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
16533 AAAGATATAC
16543 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
16588 CAAAAGAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:16578 original size:12 final size:13
Alignment explanation
Indices: 16474--16587 Score: 76
Period size: 12 Copynumber: 8.5 Consensus size: 13
16464 AATTTATAAT
16474 ATAATAATAAATA
1 ATAATAATAAATA
16487 TATAACTATATAAATA
1 -ATAA-TA-ATAAATA
16503 ATTACAT-ATAAATA
1 A-TA-ATAATAAATA
* * *
16517 TTAATAGAAAAAAA
1 ATAATA-ATAAATA
16531 ATAA-AGATATACATA
1 ATAATA-ATA-A-ATA
16546 ATAATAAT-AATA
1 ATAATAATAAATA
16558 ATAATAATAAATA
1 ATAATAATAAATA
*
16571 ATAA-AATACATA
1 ATAATAATAAATA
16583 A-AATA
1 ATAATA
16588 CAAAAGAAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 24
0.73 0.06 0.21
Matches are distributed among these distances:
11 2 0.02
12 22 0.27
13 15 0.18
14 20 0.24
15 11 0.13
16 11 0.13
17 1 0.01
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (13 bp):
ATAATAATAAATA
Found at i:17445 original size:26 final size:26
Alignment explanation
Indices: 17415--17467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17405 GTTGACTTAG
*
17415 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17467 G
1 G
17468 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18318 original size:26 final size:26
Alignment explanation
Indices: 18288--18340 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18278 GTTGACTTAG
* *
18288 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18314 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18340 G
1 G
18341 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19667 original size:871 final size:873
Alignment explanation
Indices: 16721--20513 Score: 5063
Period size: 876 Copynumber: 4.3 Consensus size: 873
16711 GGGGGTGCGT
*
16721 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
16786 TCGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
16851 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* **
16916 TGAATTTTTTGTGC-TGGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAA-T
196 TGAATTTTTTGTGCAT-GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * **
16978 GCCTTTCGAAAAAATTTTAAAAAA-TCTTGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAAATA
260 -CCTTCCAAAAAAATTTTAAAAAATTC-CAAACCGT-AAAAAGTTTCAAAAATCGTG-AAAAATA
* *
17041 GAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATAAATTTACA
321 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
17106 AGCCATAAAAATGGCATTGGA-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
386 AGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA
** * *
17170 TCGATCCACGACTTGCGCATCTTGTCTCTCTGGCCGGCATAGTACCCGCCCGCCAGCCCGCCCGC
451 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGT----GCCCGCC--CGC-CCCGC
* * * * *
17235 TCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATATAGGATCAGACCAGACCGAGG
509 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGG
* * ** * *
17300 GTTGCGGCAGCAAGATCGGTAGCACGTAGAGGAAAACGCGATCGATCCCCGGCTTGCGCATCCCG
574 GTTGCGGCAACAAGATCGGTAGCACGCAGAGG-GGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
17365 CCCCACTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
638 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCAT
* * *
17430 TCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAG
703 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAG
* ***
17495 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTCTTCGTTGGGGCACCATCGCCGGA-
768 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTCTTCACCGGGGCACCATCGCCGGAT
17559 GGCATTGGGG-TCCG-GCGATC-GGGGGCCGGGTTGGGTGTGC
832 GGCATTGGGGTTCCGAGCGATCGGGGGGCCGGG-TGGGTGTGC
*
17599 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATC-AACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17663 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17728 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
17793 TAAATTTTTAG-GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTC
196 TGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** * * * ** ** *
17857 CTTCCAAAAAAGGTTTGAAAATTTCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATATAAAA
261 CTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
17922 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAACAAGCC
326 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCC
* *
17987 ATAAAAATGGCATTGGC-CA-GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 ATAAAAATGGCATT-GCACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
* * * *
18050 ATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAACATAGGGCCCGCCCGCCCACCCGCTCGTTTC
454 ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG--C-CCCGCTCGTTTC
* * * *
18115 ATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCGGACCAAGGGTTGTGG
516 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * ** *
18180 CAACAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCATCTTGCACATCCCGCCCCTCT
581 CAACAAGATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
18245 GGCCGGCTGAGCACCCGTATGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
645 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
18310 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCGACAGCACATGT
710 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGCACATGC
* *
18375 TGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCG
775 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G---C--CG
* * *
18440 AAGAACCTAACCGACGGCATTGGGGTT-CTAGCGATCGGGGGGCTGGGTGGGTGTGT
829 --G-A--T-------GGCATTGGGGTTCCGAGCGATCGGGGGGCCGGGTGGGTGTGC
*
18496 GTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
18561 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
18625 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGC
131 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
18690 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA-CTGCGTCTACCAAGATTGGGACCAAAAC
196 TGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAAC
* * *
18754 TCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAA
259 TCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
18819 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
324 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
18884 CATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTACCTAAACCAACCTATTACCCTATCG
389 CATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
* * * * * * *
18948 ATCCACGGCTTGCGCATCCCGTCCCTTTGGCCGGCGTAGTGCCCGCCCG-CCGGCTCGTTTCGTC
454 ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCCGCTCGTTTCATC
* *
19012 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCGGACCGGACCGAGGGTTACGGCA
519 GGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * ** ** *
19076 ACAAGATTGGTAGCATGCAGAGGGGACTTGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
583 ACAAGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
19141 CGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGAATTAGGCATACGGAGTGCATTCCCAGTCTA
648 CGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * *
19206 AGGATGTGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGG
713 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * ** * *
19271 GCT-GAGGAATGTGCTGGTGCCGCATTTTCCTTCGTCGGGGCATCATCGTCGGATGGCATTGGGG
778 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGATGGCATTGGGG
19335 TTCCGA-CGATCTGGGGGGCCGGG-GGGTGTGC
842 TTCCGAGCGATC-GGGGGGCCGGGTGGGTGTGC
* * * *
19366 GTACATGATATGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
19431 TCGAGAACTCACA-CCCCTTGAAAAAGCTTTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTA
66 TCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
19495 AAGTGTCTAAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAG
130 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
19560 CTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAAC
195 CTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
19625 TCCTTCCAAAAAAACTTTAAAAAATTCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
259 TCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
19690 AACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGC
324 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
19755 CATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
389 CATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
* * * *
19819 ATCCACGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGTTTC
454 ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG-CC--CCGCTCGTTTC
* * **
19884 ATCGGTTGGTTTAGGCATACGGAGTTTATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTAG
516 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * * * * * * *
19949 TAGCAGGATCGGTAGCTCACAGAAAGGGACCCGACCGATCCTCGGCTTGCGTATCCTGCCCCTTT
581 CAACAAGATCGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * *
20014 GGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGT
645 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
20079 CTAAGCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGACCGAGGGTTACGGCAGCACATGC
710 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGCACATGC
* ** * * *
20144 TGGGCTCGAGCATGTG-TCGGCGCCATATTTTTCTTTACCGGGGCACCATCGCCAGACGGCATTG
775 TGGGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGATGGCATTG
* *
20208 GGGTTCC-AGCGATCGGGCGGGTCAGG-GGGTGTGC
839 GGGTTCCGAGCGATCGGG-GGGCCGGGTGGGTGTGC
* * *
20242 GCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * **
20307 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACAAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
20372 AGTGT-TCAAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAG
131 AGTGTCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
20436 CTGAATTTTTTTGTGCATG-CAAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAA
195 CTGAA-TTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
20500 CTCCTTCCAAAAAA
258 CTCCTTCCAAAAAA
20514 TAGAAAATGA
Statistics
Matches: 2572, Mismatches: 278, Indels: 132
0.86 0.09 0.04
Matches are distributed among these distances:
869 6 0.00
870 122 0.05
871 374 0.15
872 19 0.01
873 269 0.10
874 3 0.00
875 91 0.04
876 529 0.21
877 321 0.12
878 65 0.03
879 1 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
890 1 0.00
892 1 0.00
893 185 0.07
894 87 0.03
895 1 0.00
896 12 0.00
897 158 0.06
898 164 0.06
899 154 0.06
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (873 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGAT
CCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAACA
AGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGATGGCATTGGGGTTCC
GAGCGATCGGGGGGCCGGGTGGGTGTGC
Found at i:20086 original size:26 final size:26
Alignment explanation
Indices: 20057--20109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20047 CTTGACTTAG
*
20057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20083 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20109 G
1 G
20110 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20917 original size:26 final size:26
Alignment explanation
Indices: 20881--20933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20871 GTTGACTTAG
* *
20881 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
20907 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
20933 G
1 G
20934 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:21313 original size:847 final size:860
Alignment explanation
Indices: 20200--22079 Score: 2195
Period size: 847 Copynumber: 2.1 Consensus size: 860
20190 CATCGCCAGA
* * *
20200 CGGCATTGGGGTTCCAGCGATCGGGCGGGTCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
1 CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* *
20265 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
20330 AAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACAAAAGTGTTCAAAATGGGGACACTTT
130 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTCAAAATGGGGACACTTT
* *
20395 TTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAC
195 TTTCAAATAGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCAAAC
* *
20460 AAAAATACAAGGATCACGTCTACCAAGTTTAGGG-C-C-AAAA-CTC-C-TTC-CA-AAAAATAG
260 AAAAATACAAGGATCACGTCTACCAAGTTCAGGGACTCAAAAATCTCACATTCACAGAAAAATAA
20517 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
325 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
20582 GCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATC
390 GCCATAAAAATGGCGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATC
* * * * ** *
20647 AATCAATGGCTTGCGCATCCTG-TCTCTCTGGTCGGCGT-A-G-T-GCCTGCCCGCTCG-CTC-T
455 AATCAACGGCTTGCGCATCCCGACCTCTCTGGCCAACGTAATGCTCGCCTGCCCGCCCGCCTCGT
* * * * *
20705 TTGCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGT
520 TT-CGTCGGTTGGCTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGAT
** * * * **
20769 TGTGGTAGTAAGATCTG-TGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCACC
583 TGCAGTAGTAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACC
* *
20833 CCACTAGCCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
648 CCACTAGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ** ** *
20898 CCATTCTAAGCATACGGAGTTCAATCCCAATCTAAGATCGGATCGGACTGAGGGTTCCTGTAGCA
713 CCAGTCTAAGCATACGGAGTTCAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCA
* * * * * **
20963 CAT-ATAGGGCTCGGGTATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCAGAGCA
778 CATGACA-GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCA
*
21027 TCACCGGAGAACCTGACTGG
842 TC-CCGGAGAACCTGACCGG
*
21047 CGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
1 CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
*
21112 GGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** * *
21177 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGATACTT
130 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTC-AAAATGGGGACACTT
* * *
21241 TTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCGTACCAA
194 TTTTCAAATAGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-CCAA
* *
21306 A-AAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTCAGGG------A--C--TC-----------AAAA
21370 ATCTCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
302 ATCTC--A-C------A--TTC----A-CA-GAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
* * * *
21435 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCTTTGGCATGCA
350 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCACGCA
* * *
21500 GAAATATGAAGATGTGCCTAAACCCACCCACCACGCTATCGATCCACGGCTTGCGCATCCCGACC
415 GAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCAATCAACGGCTTGCGCATCCCGACC
*
21565 TCTCTGGCCAACGTAATGCCCTCTCGTCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAAG
480 TCTCTGGCCAACGTAATG----CTCGCCTGCCCGCCCG--C-CTCGTTTCGTCGGTTGGCTTAAG
*
21630 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGATTGCAGTAGTAGGATCGGCAG
538 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGATTGCAGTAGTAAGATCGGCAG
* ** ** * * ** **
21695 CACACAGAGGGGGACCCGATCGATCCCTGGCTTACGCATCCTGCCCCTCTGGTTGGTTGAGCGCC
603 CACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCACTAGCCGACTGAGCGCC
* *
21760 CGCATGCTTGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
668 CGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
21825 TCATTCCCAGTCAAAGATCGGACCGGACCAAGGGTTGAGGCAGCACGTGCCAGGCTCGAGCATGT
733 TCAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCACATGACAGGCTCGAGCATGT
*** * *
21890 GCTGGTGTTGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGCGGAGAACCTGACCGG
798 GCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCCCGGAGAACCTGACCGG
* * *
21953 CGTCATTAGGGTTTC-GACGAT--GGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 CGGCATTAGGGTTCCAG-CGATCGGGGGGGTCG-GGGGGTGTGCGCACATGATGTGTGATGGGTG
** *
22015 CTGAAACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
22080 TATTGGACCA
Statistics
Matches: 862, Mismatches: 103, Indels: 78
0.83 0.10 0.07
Matches are distributed among these distances:
846 2 0.00
847 264 0.31
848 4 0.00
856 1 0.00
859 1 0.00
871 4 0.00
872 3 0.00
876 1 0.00
885 3 0.00
891 2 0.00
893 147 0.17
894 12 0.01
895 1 0.00
896 1 0.00
901 1 0.00
902 11 0.01
904 12 0.01
905 87 0.10
906 102 0.12
907 202 0.23
908 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (860 bp):
CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTCAAAATGGGGACACTTTT
TTCAAATAGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCAAACA
AAAATACAAGGATCACGTCTACCAAGTTCAGGGACTCAAAAATCTCACATTCACAGAAAAATAAA
AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCA
ATCAACGGCTTGCGCATCCCGACCTCTCTGGCCAACGTAATGCTCGCCTGCCCGCCCGCCTCGTT
TCGTCGGTTGGCTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGATTGC
AGTAGTAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCA
CTAGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCACAT
GACAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCCC
GGAGAACCTGACCGG
Found at i:22886 original size:4 final size:4
Alignment explanation
Indices: 22877--22910 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
22867 CCAGCGTAGT
* *
22877 GCCC GCCC GCCC GCCC GCCC GCTC GCCC GTCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
22911 TCACCCGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.68, G:0.26, T:0.06
Consensus pattern (4 bp):
GCCC
Found at i:22911 original size:12 final size:12
Alignment explanation
Indices: 22877--22918 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
22867 CCAGCGTAGT
*
22877 GCCCGCCCGCCC
1 GCCCGCCCGCTC
22889 GCCCGCCCGCTC
1 GCCCGCCCGCTC
*
22901 GCCCGTCCGCTC
1 GCCCGCCCGCTC
*
22913 ACCCGC
1 GCCCGC
22919 TTGTTTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.02, C:0.67, G:0.24, T:0.07
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:25977 original size:877 final size:873
Alignment explanation
Indices: 23797--29413 Score: 6862
Period size: 868 Copynumber: 6.5 Consensus size: 873
23787 ACGTAGACCC
* * * *
23797 GCCCGCCCGCACGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGAT
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * * *
23862 CGGATCGAGGATTGAAGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCAT
66 CGGACCGAGGGTTGGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCAC
* * ** *
23927 TGGGGCACCATCGTCAGAGGATCGTCGGAGAACCTGATCGATGGCATTGGGATTCCAACGATCGG
130 TGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATC-G
23992 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
194 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
24057 CCTATCCCTCATCAAACCTTGATAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAAGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
* *
24122 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
24187 ACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGCCAACAAAAATAAAAGGATCACGTCTACC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * **
24252 AAGTTT-GGAGCCAAAATGTTTTTCGCAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGA
454 AAGTTTGGGA-CCAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAA
*
24316 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
24381 TT-TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * ** * * *
24445 TACCTACCACCCTATCGATCCATGACTTGCACATCCTACCTCTCTGGCCGGCGCAGAGCCCACCC
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
**
24510 GCCAACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
712 GCCCGCCCGCCC-T--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
24575 GATCAGATCGGACCAAGGG-T----T-----G--CGGCAGCACGCATAGGGGGACCCGGCCGATC
774 GATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * *
24628 CCCGGCTTGCGCATCCCGCCCGTCTGGCCGGTTGAGT
839 CCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-A
* * *
24665 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * *
24730 CGGACCAAGGATTGAAACGGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCA-
66 CGGACCGAGGGTTG-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCAC
*
24794 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATTGATGGCATTGGGATTCCAGCGATCA
130 T-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATC-
* *
24859 GGGGGGTCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
193 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
24924 CCCTATCCCTCATCGAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTT
258 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
* *
24989 TGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTG
323 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * ** *
25054 TACACTTCGAGTTTTTAGCTGAATTTTTTTATACATTTCAAAAAAAATACAAGGATCACGTCTAC
388 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** **
25119 CAAGTTTGGCACCAAAATGCCTTTCAAAAAAATTAAAAAAAATCCCAAACCATAAAAAGTTTTGA
453 CAAGTTTGGGACCAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAA
*
25184 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC-TCAACGTGAAGGCTTAAGGGACC
517 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACC
* * * *
25248 ATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGCA-AAATATGAAAATGTACCCAAAC
581 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
25312 CCACCTGCCACCCTATCGTTCCACGGCTTGCGCTTCCCGCCTCTCTAGACGACGTAGTGCCCGCC
646 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
25377 CGCCCGCCCGCCTGTCTGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCATTCTA
711 CGCCCGCCCGCC---CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** *
25442 GGATCAGACCAGACTGATTGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
773 AGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
25507 CCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
838 CCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
* * *
25544 TGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
1 -GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
25609 TCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCA
65 TCGGACCGAGGGTTG-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
* * *
25674 CTGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGATTGATGGCATTAGGATTCCAGCGATCG
129 CTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATCG
*
25739 GGGGG-C-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
194 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
25802 CCTATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
** *
25867 GCTGCCAGTAGTTATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
25932 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
25997 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
454 AAGTTTGGGACCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAA
* *
26062 AATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
518 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
26127 TGTATGAATTTACAAG--A-CAAAATGGCATTGGCAAC-CAGAAATATGAAGATGTGCCTAAACC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
26188 CACCTACCACCCTATCGATCCAC-G-TT-CGCATCCCGCCTCTTTGGTCGACATAGT--------
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
26242 G-CCGCCCG-CCT-CTTGTTTCATC-GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAC
712 GCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** *
26303 CGGACCAGAC-GAGGGTTGCGACAGCA-GATC-GCAGCACACAGA-GGGGACCCGA--GATCCCC
777 CGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
*
26362 GGCTTACGCAT-CC-CCCCTCTGGCCGGCTG-A
842 -GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
* *
26392 GCGCCGCACG-TCGTTTCGT-GGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GA
1 GC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * **
26454 TCAGACCGAGGATTGAAGCAGCACATG-TAGGCTC-GGCATGT-ATGGTGCCGCATTTTTCTTGT
65 TCGGACCGAGGGTTGGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
*** *
26516 C-GGGGCACCAT-GTCGGAGCATTGTCGGAGAACCTGATCGA---CATTGGG-TTCCAACGATCG
129 CTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATCG
26575 GGGGGCC--GGGGTGTGCGCACATGATGT--GATGGGTGCT-GT--TTGGCCCTTATATTGGCCC
194 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
26633 CCTATCCCTCATCAAACCTCGAGAACTCACA--CCCTTAAAGAGCATTTGAGATTTTACAA-TTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
*
26695 GCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTG
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTG
*
26760 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTAC
388 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
26825 GAAGTTTGGG--CAAAATCCTTT-G-AAAAATTTT-AAAAAT-TCAAA--A-AAAAATTTTGAAA
453 CAAGTTTGGGACCAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAA
26881 AATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
518 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
26945 TGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
*
27010 A-CTACCACCCTATCGA-CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCC-
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
27068 TCCG-CC-CCC-GATCGTTTCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
713 CCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
27129 GGACCAGACTGAGTGTTGCAGTGGTAGGATCGGCAGCACGCAGAGGGGAACCTGATCGATCCCTA
778 GGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-C
* *
27194 GCTTGCGCAT--C-CCACTCTGGCCGGCTGAGC
842 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-A
*
27224 GCCCGCACGCTCATTTCGTGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGA
1 GCCCGCACGCTCGTTTC---G-TG-----GG--T-T-GA---C-TT---AG-----GCATACGGA
* * * * * *
27289 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATACT-GGCTCAGACAT
41 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-GACAGCACATGCTGGGCTCGGGCAT
* * * * ** *
27353 GTGCTGGTGCCGTATTTTTCTTCGCCGGGTCACTATCACCGGAGCATCACCGGAGAACCTGACCG
105 GTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCG
** * * *
27418 GCGGCATTGGGTTTCGA-C-ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
170 ATGGCATTGGGATTCCAGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
27481 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
234 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * *
27546 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGCACACTT
299 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
27611 TTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTT-TGCATGTCAA
364 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
27675 CAAAAATACAAGGATCACATCTAGCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAAAA
429 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACC-AAAATCCTTTC-GAAAAAATTTTAAAA
* * * * *
27739 AATCTCGAACCACAAAAAGTTTCAAAAATCGTG-AAAA-ACAAAATGAGTCGTCTTGCCATGAAA
492 AATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
27802 CTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCACGC
557 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * **
27867 AGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCGACGGCTTGCGCATCCCGTG
622 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * * *
27932 TCT-TAGGCCGGCGTAATGCTCGCCCGCCCGTCCACCC-GCTCTTTTCGTCAGTTGGCTTAGGCA
687 TCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
27995 TACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGCAGCAGGATCGGCCGCA
751 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCA
** ** * * *
28060 CGCA-ATGGGGGACCCGGTCGATGGCCGACTTGCGCATCCCTCTCCACTGGCCGGCTG-A
816 CGCAGA-GGGGGACCCGACCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
* ** * * * *
28118 GCACCTACAAACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGG
1 GC-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
28183 ATCGGATCGAGGGTTACGG-TAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTT
64 ATCGGACCGAGGGTT--GGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
* * * * *
28247 CAC-CGGGCACCATCGTCGGAG-A--A-C--TG-ACC-GA-C-A--GTATTGGGGTTTC-GACGA
127 CACTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAG-CGA
*
28298 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGG
191 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
28363 CCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
256 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
* * *
28428 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCT
321 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
** * * * *
28493 TGTACACTTCGAGTTTTTAGCTGTTTTTTTTTTTGTGCACGCCAACAAAAATAGAAGTATCGCGT
386 TGTACACTTCGAGTTTTTAGCTG--AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * *
28558 CTA-CAAGTTTGGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAATGTT
449 CTACCAAGTTTGGGACCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTT
* * * *
28622 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTATGAG
513 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
28687 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATACT-ATGATGTGCCT
578 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA-TGAAGATGTGCCT
* * *
28751 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCC
642 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
* * *
28816 TGCCCGCCCGCCCG---TGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCA
707 CGCCCGCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * ** * *
28878 AAGAT-TGACCGGACCGAGGGTTACGGTAGTAGGATCGACAGCACATAGAGGGGGACACG-GCGA
772 AAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * *
28941 TCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
837 TCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGA-A
*
28980 GCCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 GCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * **
29045 CCGAACCGAAAGTTATGG-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGTTGTATTTTTCTTC
65 TCGGACCG-AGGGT-TGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC
* ** * * * * * * *
29109 GCTGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATC
128 ACTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATC
* * * *
29174 GGTGGGTCCGAAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTG
193 GG-GGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
29239 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
255 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
* *
29304 GTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
320 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
29369 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
385 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
29414 TTGCGTATCC
Statistics
Matches: 4160, Mismatches: 417, Indels: 337
0.85 0.08 0.07
Matches are distributed among these distances:
818 63 0.02
819 29 0.01
820 18 0.00
821 43 0.01
822 26 0.01
823 6 0.00
824 9 0.00
825 55 0.01
826 21 0.01
827 9 0.00
828 49 0.01
829 133 0.03
830 16 0.00
831 71 0.02
832 8 0.00
833 2 0.00
834 10 0.00
835 1 0.00
836 37 0.01
837 7 0.00
840 24 0.01
841 10 0.00
842 20 0.00
843 7 0.00
844 8 0.00
845 25 0.01
846 41 0.01
847 11 0.00
848 7 0.00
849 17 0.00
850 4 0.00
851 16 0.00
853 12 0.00
854 11 0.00
855 4 0.00
856 11 0.00
857 43 0.01
858 36 0.01
859 39 0.01
860 240 0.06
861 172 0.04
862 145 0.03
863 67 0.02
864 174 0.04
865 14 0.00
866 9 0.00
867 8 0.00
868 693 0.17
869 44 0.01
870 14 0.00
871 68 0.02
872 57 0.01
873 54 0.01
874 74 0.02
875 150 0.04
876 43 0.01
877 567 0.14
878 6 0.00
879 17 0.00
880 243 0.06
881 5 0.00
882 1 0.00
883 117 0.03
884 34 0.01
885 34 0.01
887 2 0.00
889 4 0.00
890 3 0.00
891 2 0.00
892 20 0.00
893 94 0.02
894 2 0.00
895 3 0.00
896 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
CGGACCGAGGGTTGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACT
GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGATCGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGACCAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
GCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGCTT
GCGCATCCCGCCCCTCTGGCCGGCTGAA
Done.