genome.fa.s31.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167856.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75425

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696--1736	2	20.5	2	100	0	82	51	0	0	48	1.00
1793--1844	23	2.3	23	83	6	61	40	7	15	36	1.76
1807--1853	23	2.0	23	100	0	94	36	12	17	34	1.87
3328--3384	25	2.3	26	82	17	77	45	0	7	47	1.30
12894--12932	11	3.6	10	83	16	51	64	5	0	30	1.15
12897--12930	14	2.4	15	90	9	54	64	5	0	29	1.17
13106--13142	19	1.9	19	94	0	65	54	2	0	43	1.14
14044--14116	31	2.3	30	79	9	83	20	4	12	63	1.45
14059--14123	31	2.1	31	88	2	94	23	3	13	60	1.48
14235--14285	24	2.2	22	82	6	57	45	5	1	47	1.38
14235--14301	22	3.0	23	80	8	75	41	5	4	47	1.48
14347--14417	22	3.2	22	82	11	92	36	7	8	47	1.61
15013--15051	8	4.9	8	87	12	62	12	0	0	87	0.55
15016--15068	24	2.2	24	82	0	61	7	5	3	83	0.92
16689--16858	22	7.8	22	74	5	130	38	7	8	45	1.63
16676--16858	44	4.2	43	79	4	145	38	7	8	45	1.64
16689--16845	66	2.4	65	77	5	154	38	6	8	46	1.61
16859--16973	44	2.9	39	71	14	108	38	9	5	46	1.59
16887--16956	22	3.2	22	79	0	77	37	8	8	45	1.65
16942--16990	20	2.4	21	79	3	55	36	12	0	51	1.40
17004--17069	21	3.0	22	72	14	64	36	9	4	50	1.55
17267--17452	22	8.5	22	76	2	122	39	10	4	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17282--17465	44	4.2	44	77	2	165	38	9	4	47	1.57
17295--17474	22	8.2	21	75	9	105	40	9	4	46	1.56
17496--17532	19	1.9	19	94	0	65	35	10	10	43	1.75
17550--17736	22	8.5	22	69	15	102	36	10	2	50	1.49
17628--17736	42	2.5	43	86	11	143	37	10	1	50	1.47
17875--17965	44	2.1	44	81	4	103	32	8	6	51	1.59
17903--18008	22	4.8	22	77	4	79	33	7	5	53	1.53
17941--18020	22	3.6	22	75	11	74	35	7	3	53	1.47
17947--18033	22	4.0	21	75	14	70	37	5	3	52	1.42
18119--18165	22	2.2	21	85	11	60	31	8	0	59	1.27
18191--18461	22	12.3	22	76	9	142	36	8	4	50	1.53
18149--18342	44	4.4	44	71	8	110	36	9	3	51	1.52
18441--18470	14	2.1	15	93	6	53	30	0	6	63	1.20
18215--18484	66	4.1	66	74	8	226	37	7	4	51	1.50
18639--18689	26	2.0	25	81	11	59	64	3	5	25	1.33
19081--19130	21	2.4	21	86	0	64	36	20	2	42	1.63
21967--22076	57	1.9	57	96	0	202	27	24	11	36	1.90
23387--23423	18	2.0	19	89	5	58	78	2	10	8	1.06
23535--23871	60	5.9	53	75	13	178	34	10	7	46	1.68
23588--23946	60	6.2	61	73	15	257	32	11	8	47	1.69
23588--23952	116	3.1	114	81	10	397	32	11	7	47	1.68
24537--24566	15	2.0	15	93	0	51	66	10	0	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24811--24940	25	5.5	24	73	21	105	63	3	4	29	1.30
24864--24908	21	2.3	19	82	17	56	60	2	6	31	1.35
24813--24939	46	2.8	45	76	11	132	62	3	4	29	1.31
24888--24943	27	2.2	26	87	6	78	67	1	1	28	1.10
25097--25138	19	2.1	21	91	8	70	4	2	7	85	0.80
25155--25369	43	4.9	44	87	6	303	46	20	10	21	1.81
25155--25370	87	2.5	88	90	5	323	46	20	11	21	1.82
25355--25538	43	4.3	43	81	5	187	44	14	16	25	1.85
25225--25499	87	3.2	85	82	11	276	45	17	14	23	1.85
25361--25528	86	2.0	85	84	8	225	41	16	17	25	1.89
26447--26497	3	16.7	3	84	11	59	33	0	0	66	0.92
26444--26500	16	3.4	16	83	11	62	33	0	0	66	0.92
26457--26526	12	5.8	12	76	15	65	27	2	2	67	1.19
26484--26534	26	2.0	26	92	0	84	25	5	3	64	1.33
34183--34245	18	3.5	16	77	18	54	82	1	14	1	0.82
34181--34269	38	2.3	37	83	16	101	80	1	12	5	0.93
34182--34271	29	3.1	28	78	13	78	82	1	11	5	0.89
34181--34274	11	8.3	11	71	14	57	80	1	12	5	0.92
34179--34274	39	2.4	40	79	17	119	80	1	12	6	0.95
36113--36380	84	3.2	84	92	1	421	25	14	21	38	1.91
36081--36467	42	9.1	41	83	5	362	25	14	21	39	1.90
36297--36470	43	4.0	44	80	5	185	23	14	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36667--36759	26	3.8	26	78	10	92	26	5	2	65	1.25
36654--36763	23	5.2	20	70	23	73	29	4	1	64	1.23
36981--37025	21	2.1	21	84	8	56	24	0	17	57	1.40
37652--38027	202	1.9	200	81	7	456	46	9	9	34	1.69
38929--38988	8	7.8	8	83	10	72	11	3	0	85	0.72
38929--38987	15	3.9	14	81	12	64	10	3	0	86	0.68
38935--38987	1	53.0	1	78	0	52	9	1	0	88	0.58
46214--46244	15	2.1	15	93	0	53	51	6	22	19	1.69
49510--49883	55	6.7	55	72	14	211	34	11	7	46	1.68
49694--49877	57	3.2	57	75	11	164	34	12	5	46	1.66
49693--49908	58	3.8	56	72	12	165	34	10	6	48	1.62
50845--50881	3	11.7	3	88	11	56	67	0	2	29	1.04
50844--50981	28	5.4	27	71	20	84	66	1	2	28	1.14
50877--50977	45	2.3	43	88	10	150	65	1	2	29	1.18
50848--50981	71	1.9	72	83	7	175	66	1	2	29	1.15
50857--50975	23	5.3	21	67	18	62	65	1	3	29	1.18
50904--50940	17	2.2	17	95	0	65	67	0	0	32	0.91
53459--53809	183	1.9	182	90	1	551	42	15	8	33	1.78
56280--56305	2	13.0	2	100	0	52	0	0	50	50	1.00
62051--62095	16	2.9	16	81	15	58	33	0	6	60	1.23
63037--63187	75	2.0	74	81	6	171	53	5	5	35	1.48
65639--65816	84	2.1	87	84	3	227	39	20	7	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66219--66516	89	3.4	89	86	0	400	24	8	13	53	1.67
66406--66456	25	2.0	25	88	3	75	17	11	13	56	1.66
72331--72412	26	3.2	26	85	0	101	31	7	13	47	1.70

Tables:   1

The End!