Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168135.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30016
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Found at i:1447 original size:23 final size:22
Alignment explanation
Indices: 1421--1464 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
1411 ACTATAACAA
1421 AGAAAGAAAATAAAAATA-AATAT
1 AGAAA-AAAA-AAAAATACAATAT
*
1444 AGAAAAAGAAAAAATACAATA
1 AGAAAAAAAAAAAATACAATA
1465 AAAATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 7 0.37
23 5 0.26
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.14
Consensus pattern (22 bp):
AGAAAAAAAAAAAATACAATAT
Found at i:1464 original size:26 final size:25
Alignment explanation
Indices: 1423--1497 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
1413 TATAACAAAG
*
1423 AAAGAAAATAA-AAATAAATATAGAA
1 AAAGAAAA-AATAAATAAAAATAGAA
*
1448 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATA-AATAAAAATAGAA
*
1474 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAA-TAAATAAAAAT
1498 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
24 2 0.05
25 9 0.21
26 14 0.33
27 2 0.05
28 14 0.33
29 1 0.02
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (25 bp):
AAAGAAAAAATAAATAAAAATAGAA
Found at i:1470 original size:28 final size:28
Alignment explanation
Indices: 1413--1497 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 28
1403 ATTTATAAAC
* *
1413 TATAACAAAGAAAGAAAATA-AA-AATAAA
1 TATAAAAAAGACA-AAAATACAATAA-AAA
1441 TATAGAAAAAGA-AAAAATACAATAAAAA
1 TATA-AAAAAGACAAAAATACAATAAAAA
* **
1469 TATAAAAAGGACAAAAATTGAATAAAAA
1 TATAAAAAAGACAAAAATACAATAAAAA
1497 T
1 T
1498 TTCAAAAATG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
27 12 0.24
28 29 0.59
29 8 0.16
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (28 bp):
TATAAAAAAGACAAAAATACAATAAAAA
Found at i:1557 original size:8 final size:8
Alignment explanation
Indices: 1541--1602 Score: 76
Period size: 7 Copynumber: 7.8 Consensus size: 8
1531 AAAATAGTTT
1541 AAAAA-AA
1 AAAAATAA
1548 AAAAATAA
1 AAAAATAA
1556 AAAAATAA
1 AAAAATAA
1564 AAAAAT-A
1 AAAAATAA
1571 AAAAATAAA
1 AAAAAT-AA
1580 AAACAATTAA
1 AAA-AA-TAA
1590 AAAAA-AA
1 AAAAATAA
1597 AAAAAT
1 AAAAAT
1603 TAAGTAAGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
7 19 0.39
8 16 0.33
9 6 0.12
10 7 0.14
11 1 0.02
ACGTcount: A:0.87, C:0.02, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:1605 original size:16 final size:15
Alignment explanation
Indices: 1541--1602 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 15
1531 AAAATAGTTT
1541 AAAAAAAAAAAATAA
1 AAAAAAAAAAAATAA
1556 AAAAATAAAAAAATAA
1 AAAAA-AAAAAAATAA
1572 AAAATAAAAAACAATTAA
1 AAAA-AAAAAA-AA-TAA
1590 AAAAAAAAAAAAT
1 AAAAAAAAAAAAT
1603 TAAGTAAGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
15 6 0.14
16 21 0.49
17 9 0.21
18 7 0.16
ACGTcount: A:0.87, C:0.02, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAAAAAAAAAATAA
Found at i:1621 original size:1 final size:1
Alignment explanation
Indices: 1541--1601 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
1531 AAAATAGTTT
* * * * * **
1541 AAAAAAAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAACAATTAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1602 TTAAGTAAGC
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.89, C:0.02, G:0.00, T:0.10
Consensus pattern (1 bp):
A
Found at i:1704 original size:22 final size:21
Alignment explanation
Indices: 1674--1714 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
1664 GTGGGGGAAA
*
1674 AAAAAGAAAAGCAGAAAAGAAT
1 AAAAAGAAAAG-AAAAAAGAAT
*
1696 AAAATGAAAAGAAAAAAGA
1 AAAAAGAAAAGAAAAAAGA
1715 TTTGGAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (21 bp):
AAAAAGAAAAGAAAAAAGAAT
Found at i:1871 original size:13 final size:13
Alignment explanation
Indices: 1855--1879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1845 AAGCCAGAAA
1855 AAAATACAAAATG
1 AAAATACAAAATG
1868 AAAATACAAAAT
1 AAAATACAAAAT
1880 ACATAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATACAAAATG
Found at i:1878 original size:20 final size:20
Alignment explanation
Indices: 1855--1892 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1845 AAGCCAGAAA
1855 AAAATACA-AAATGAAAATAC
1 AAAATACATAAAT-AAAATAC
1875 AAAATACATAAATAAAAT
1 AAAATACATAAATAAAAT
1893 TTTGAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.71, C:0.08, G:0.03, T:0.18
Consensus pattern (20 bp):
AAAATACATAAATAAAATAC
Found at i:2201 original size:16 final size:16
Alignment explanation
Indices: 2172--2209 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2162 TATGAAACCT
*
2172 ATAAACAAAGAAAGGAA
1 ATAAA-AAAAAAAGGAA
2189 ATAAAAAAAAAAGGAA
1 ATAAAAAAAAAAGGAA
2205 A-AAAA
1 ATAAAA
2210 TGAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 11 0.55
17 5 0.25
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (16 bp):
ATAAAAAAAAAAGGAA
Found at i:3308 original size:24 final size:24
Alignment explanation
Indices: 3267--3337 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 24
3257 TTATGAAACT
3267 ATAAA-CAAAGAAAGAAAA-AAAA
1 ATAAAGCAAAGAAAGAAAAGAAAA
*
3289 ATGAAAGCAAACGAAA-AAAAGATAA
1 AT-AAAGCAAA-GAAAGAAAAGAAAA
*
3314 ATAAAGCACAA-AAA-AAGAGAAAA
1 ATAAAGCA-AAGAAAGAAAAGAAAA
3337 A
1 A
3338 ACAAAAATAC
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
22 2 0.05
23 14 0.34
24 14 0.34
25 11 0.27
ACGTcount: A:0.75, C:0.07, G:0.13, T:0.06
Consensus pattern (24 bp):
ATAAAGCAAAGAAAGAAAAGAAAA
Found at i:3991 original size:820 final size:828
Alignment explanation
Indices: 3118--5032 Score: 2678
Period size: 820 Copynumber: 2.3 Consensus size: 828
3108 AAGGAAAACG
*
3118 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
3182 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * *
3247 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAT-GAAAGCAAACGAAAAAAAGA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAATAAAAAGAAAAAGAAAAAAAGA
*
3311 TAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAAAATA
196 TAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAAAAGA
*
3376 AAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAGGAAAAAAATA
261 AAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAATA
*
3440 GTTTAAAAAATA-AAAAAAATGAAAAACATATAAGACCTAACAATATAAAAAGTCATACAAAAAA
326 GTTTAAAAAATACAAAAAAATGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
* *
3504 TTAAAAGAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
391 TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
3569 TGAAAGGAAATTTGTAGG-AAAAAAAATAGAATAGCACGAAAAGAATAAAAATGAAAAGACAAAA
456 TGAAAGGAAATTTGTAGGAAAAAAAAATAGAATAG--C------------AA-GAAAAGACAAAA
* *
3633 TATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAACGAAAAAATTAAAGCAAG-AAAA
506 GATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAA
* * * *
3696 ATGAAAGTATATG-AAAAAAAATAAGAAGAAGGGAAATTGTGGAGGGAAAAAGTTATTAAAAAAT
571 ATGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAAT
3760 TACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAATTGAACTTTATAAAA-AT
636 TACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAATTGAACTTTATAAAACAT
* *
3824 TTC-CTA-AAAT-ATAAATG-AAAAATAAATTAAGGGAAAAAATTAAA-ATAA-AC-AAAAA-G-
701 TTCAATATAAATAATAAATGAAAAAATAAATTAAGGGAAAAAATTAAATAAAATACAAAAAAGGA
*** ** *
3880 A-AAAAA-GTAACAAAGTAAGAAAATTTTAAA-A-C-AAAGGAAAAAGTGA-ACAAAA-A-AAAA
766 ATAAAAAGGTAACAAAGTAAGAAAATAAAAAATAGCGAAACAAAAAAAT-ATA-AAAAGACAAAA
*
3937 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
4002 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
4067 TTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAATAAAAAGAAAAAAATGAAAG
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAG-AAA-AAAAAATAAAAAG--AAAAA-GAAA-
* * * * *
4132 CAACAGA-AAA-AAAG-ATAAATAAAGCACAAAAAAAACAAAAGTACAACAAAAAATTATAAAAA
190 -AAAAGATAAATAAAGCACAAA-AAA--AGAGAAAAAACAAAAATACAACAAAAAA-TATAAAAA
* *
4194 GTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAA
250 GTAAGAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAA
* *
4259 GAAAAAAAATGGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGT
315 GAAAAAAAATAGTTTAAAAAATACAAAAAAATGAAAAACATATAAGACCTAACAATATAAAAAGT
* *
4324 CAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATAAAAAAATTATGAGAATTTAAAAACA
380 CAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACA
* *
4389 GAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTT
445 GAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATT
*
4454 TGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGA
510 TGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGA
4519 AAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACA
575 AAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACA
* * * * *
4584 GAGTAGAAAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAATTGAGCTTTATAAAACTTTTCT
640 AAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAATTGAACTTTATAAAACATTTC-
*
4649 AAAATATAAATAAAAAATAAATGAAAAAATAAATTAAGGGACAAAATTAAATAAAATACGAAAAA
704 --AATATAAAT----AATAAATGAAAAAATAAATTAAGGGAAAAAATTAAATAAAATAC-AAAAA
*
4714 AGGAAAAAATAAAAAGGTAACAAAGTAAGAAAATAAAAAATTAGCGAATCAAAAAAATATAAAAA
762 AGG----AATAAAAAGGTAACAAAGTAAGAAAATAAAAAA-TAGCGAAACAAAAAAATATAAAAA
4779 GACAAAA
822 GACAAAA
* * *
4786 TGAAAGCACATAGAAAAAAGAAGAAAAATTCGAAAGGAGAAAAAGTTAACGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* * *
4851 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTTCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
4916 TTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAATAAAATATAAAAATAGAAAAAG-AAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAA-AAAA-AT-AAAA-AGAAAAAGAAAAA
4980 AAGATAAATAAAGCAC-AAAAAAG-G---AAA-AAAAATACAACAAAAAATATAAAAAG
192 AAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAG
5033 GGCAAAAATT
Statistics
Matches: 976, Mismatches: 63, Indels: 95
0.86 0.06 0.08
Matches are distributed among these distances:
817 35 0.04
818 34 0.03
819 27 0.03
820 253 0.26
821 7 0.01
822 7 0.01
823 4 0.00
825 9 0.01
826 15 0.02
827 3 0.00
828 30 0.03
829 37 0.04
830 54 0.06
831 135 0.14
832 42 0.04
833 3 0.00
834 2 0.00
836 5 0.01
837 1 0.00
838 9 0.01
839 16 0.02
840 3 0.00
842 1 0.00
843 5 0.01
844 22 0.02
845 5 0.01
846 7 0.01
847 15 0.02
848 19 0.02
849 165 0.17
850 4 0.00
851 2 0.00
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (828 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAATAAAAAGAAAAAGAAAAAAAGA
TAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAAAAGA
AAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAATA
GTTTAAAAAATACAAAAAAATGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
TGAAAGGAAATTTGTAGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAA
ACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAA
AAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAA
AAATAAAAAAGATGCAAAAAATAAGAAAAAAATTGAACTTTATAAAACATTTCAATATAAATAAT
AAATGAAAAAATAAATTAAGGGAAAAAATTAAATAAAATACAAAAAAGGAATAAAAAGGTAACAA
AGTAAGAAAATAAAAAATAGCGAAACAAAAAAATATAAAAAGACAAAA
Found at i:4514 original size:16 final size:17
Alignment explanation
Indices: 4483--4516 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
4473 ATAAAAAATT
*
4483 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
4500 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
4516 T
1 T
4517 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:4675 original size:12 final size:11
Alignment explanation
Indices: 4648--4682 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
4638 AAAACTTTTC
*
4648 TAAAATATAAA
1 TAAAAAATAAA
4659 TAAAAAATAAA
1 TAAAAAATAAA
4670 TGAAAAAATAAA
1 T-AAAAAATAAA
4682 T
1 T
4683 TAAGGGACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:5248 original size:22 final size:20
Alignment explanation
Indices: 5219--5275 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
5209 AAGGGAAAGC
5219 AACAAAAGAATAAAAATGAAA
1 AACAAAAGAATAAAAAT-AAA
***
5240 AGACAAAAGAATTGGAATAAA
1 A-ACAAAAGAATAAAAATAAA
5261 AACAAAA-AATAAAAA
1 AACAAAAGAATAAAAA
5276 ATTTTAAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
19 5 0.17
20 6 0.21
21 5 0.17
22 13 0.45
ACGTcount: A:0.74, C:0.05, G:0.11, T:0.11
Consensus pattern (20 bp):
AACAAAAGAATAAAAATAAA
Found at i:5863 original size:19 final size:18
Alignment explanation
Indices: 5837--5879 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
5827 AAAAATTTTG
5837 AGAA-AAAAAAAGAGAAAA
1 AGAAGAAAAAAAGA-AAAA
*
5855 AGAAGAAAAAAATAAAAA
1 AGAAGAAAAAAAGAAAAA
5873 ATGAAGA
1 A-GAAGA
5880 GGCAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (18 bp):
AGAAGAAAAAAAGAAAAA
Found at i:6146 original size:20 final size:20
Alignment explanation
Indices: 6122--6175 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
6112 TAAACAAAGA
6122 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
6141 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
6163 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
6176 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:6150 original size:26 final size:26
Alignment explanation
Indices: 6121--6196 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
6111 ATAAACAAAG
*
6121 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
6147 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
6173 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
6197 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:6168 original size:28 final size:26
Alignment explanation
Indices: 6103--6196 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
6093 ATAAAAATTT
*
6103 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
6132 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
6161 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
6189 ATAAAAAT
1 ATAAAAAT
6197 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:6420 original size:24 final size:22
Alignment explanation
Indices: 6387--6430 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
6377 TGTGGGGGAA
6387 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
6411 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
6431 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:6923 original size:13 final size:12
Alignment explanation
Indices: 6902--6980 Score: 54
Period size: 13 Copynumber: 6.3 Consensus size: 12
6892 ACAAAGAAAG
*
6902 AAAATAAAAAATA
1 AAAAGAAAAAA-A
6915 AAAAGAAAAAAA
1 AAAAGAAAAAAA
* *
6927 TGAAAGCAAAAGAA
1 -AAAAG-AAAAAAA
*
6941 AAAAG--ATAAA
1 AAAAGAAAAAAA
*
6951 TAAAGCAAAAAAA
1 AAAAG-AAAAAAA
6964 AAAAGAAAAAACA
1 AAAAGAAAAAA-A
6977 AAAA
1 AAAA
6981 TACAACAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
10 7 0.14
12 7 0.14
13 31 0.61
14 6 0.12
ACGTcount: A:0.81, C:0.04, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:6941 original size:41 final size:40
Alignment explanation
Indices: 6894--6971 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 40
6884 AACTATAAAC
*
6894 AAAGAAAGAAA-ATAAA-AAATAAAAAGAAAAAAATGAAAGCA
1 AAAGAAA-AAAGATAAATAAAGAAAAA-AAAAAAA-GAAAGCA
*
6935 AAAGAAAAAAGATAAATAAAGCAAAAAAAAAAAGAAA
1 AAAGAAAAAAGATAAATAAAGAAAAAAAAAAAAGAAA
6972 AAACAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
40 7 0.21
41 19 0.58
42 7 0.21
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (40 bp):
AAAGAAAAAAGATAAATAAAGAAAAAAAAAAAAGAAAGCA
Found at i:6959 original size:23 final size:24
Alignment explanation
Indices: 6924--6969 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
6914 AAAAAGAAAA
*
6924 AAATGAAAGCAAAAGAAAAAAGAT
1 AAATGAAAGCAAAAAAAAAAAGAT
6948 AAAT-AAAGCAAAAAAAAAAAGA
1 AAATGAAAGCAAAAAAAAAAAGA
6970 AAAAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.76, C:0.04, G:0.13, T:0.07
Consensus pattern (24 bp):
AAATGAAAGCAAAAAAAAAAAGAT
Found at i:6970 original size:30 final size:30
Alignment explanation
Indices: 6934--6992 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6924 AAATGAAAGC
* *
6934 AAAAGAAAAAAGATAAATA-AAGCAAAAAAA
1 AAAAGAAAAAACAAAAATACAA-CAAAAAAA
6964 AAAAGAAAAAACAAAAATACAACAAAAAA
1 AAAAGAAAAAACAAAAATACAACAAAAAA
6993 TATAAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.81, C:0.07, G:0.07, T:0.05
Consensus pattern (30 bp):
AAAAGAAAAAACAAAAATACAACAAAAAAA
Found at i:8681 original size:806 final size:808
Alignment explanation
Indices: 7826--9749 Score: 2702
Period size: 806 Copynumber: 2.4 Consensus size: 808
7816 AAAAATTTAT
7826 AGAAAATTTTAAAACAAAGGAAAAAGTTAAC-AAAAAAAATGAAAGCACATAAAAAAAAGAAGAA
1 AGAAAATTTTAAAACAAAGGAAAAAG-TAACAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAA
* *
7890 AAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAAAAGAGAATAACCAAGAATGA
65 AAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGA
7955 TAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAA
130 TAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAA
* *
8020 CAAAGAAAGAAAAAAAAATGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAA
195 CAAAGAAAGAAAAAAAAATAAAAG-AAAAGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAA
*
8085 ACAAAAATACAACAAAAAATATAAAAAGTAAGAAAATAAAAAAGACAAAA-TGAAATAAAAATTT
259 ACAAAAATACAACAAAAAATATAAAAAGTAAGAAAAGAAAAAAGACAAAATTG-AATAAAAATTT
*
8149 CAAAAATGAAATGGAATGACAAAAAGGAAAAAATAGTTT-AAAAAT-AAAAAA-TG-AAAACATA
323 CAAAAATGAAATGGAATGACAAAAAGAAAAAAAT-GTTTAAAAAATAAAAAAATTGAAAAACATA
* * *
8210 TAAGACCTAACAATATAAAAAGTCATAC-AAAATTAAAAGAGAGAAAAGTTAATGCAAAATAAAA
387 TAAGACCTAACAATATAAAAAGTCAGACAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAA
*
8274 AAAGTATGAGAATTT-AAAATAGAAATAAGAAATGAAAGGAAATTTGTAGG-AAAAAAAATAGAA
452 AAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAATAGAA
*
8337 TAGCACGAAAAGAATAAAATGAAAAGACAAAATATTTGGAATAAAAAAC-AAAAAAT-AAAAATT
517 TAG--C-----------AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATT
* * *
8400 TTAAAACAACGAAAAAATTAAAGCAAG-AAAAATGAAAGTATATG-AAAAAAAATAAGAAGAAGG
568 TTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGG
* *
8463 GAAATTGTGGAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGC-AA
633 AAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAG-AAAAAAATAAAAAAGATGCAAA
*
8527 AAATAAG-AAAAAAATTGAACTTTATAAAAATTTCCTAAAATATAAATGAAAAATAAATTAAGGG
697 AAATAAGAAAAAAAATTGAACTTTATAAAAATTTCCTAAAATATAAATAAAAAATAAATTAAGGG
*
8591 AAAAAATTAAA-ATAA-AC-AAAAA-G-A-AAAAA-GTAACAAAGTA
762 AAAAAATTAAATAAAATACAAAAAAGGAATAAAAAGGTAACAAAGTA
8631 AGAAAATTTTAAAACAAAGGAAAAAGTGAACAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAA
1 AGAAAATTTTAAAACAAAGGAAAAAGT-AACAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAA
* *
8696 AAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGA
65 AAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGA
* *
8761 TAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAACTTATGAAACTATAAA
130 TAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAA
* * * * *
8826 CAAAGAAAGAAAATAAAAAAATAAAAGAAAAAAATGAAAGCAACAGAAAAAAG-ATAAATAAAGC
195 CAAAGAAAG--AA-AAAAAAATAAAAGAAAAGAA--AAAG-GATA-AATAAAGCACAAA-AAA--
* * * *
8890 ACAAAAAAAACAAAAGTACAACAAAAAATTATAAAAAGTAAGAAAAGAAAAAGGACAAAATTTGA
250 AGAGAAAAAACAAAAATACAACAAAAAA-TATAAAAAGTAAGAAAAGAAAAAAGACAAAA-TTGA
*
8955 ATATAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAATGTTTAAAAAATACAAAAAATT
313 ATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAATGTTTAAAAAATA-AAAAAATT
9020 GAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAAT
377 GAAAAACATATAAGACCTAACAATATAAAAAGTCAGAC-AAAAATGAAAAAAGAGAAAAGTTAAT
* * *
9085 GCAAGATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAA
441 GCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTAGGAAA
*
9150 AAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAAACAAAAAAATAAAAAATTTTA
506 AAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTA
*
9215 AAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACAAGAAGAAGGAA
571 AAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG-AAAAAAAAACAAGAAGAAGGAA
* *
9280 AATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAAAAAGATTCAAAAAA
635 AATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAATAAAAAAGATGCAAAAAA
* *
9345 TAAGAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAATAAAAAATAAATTAAGGGAAA
700 TAAGAAAAAAAATTGAACTTTATAAAAATTTCCTAAAATATAAATAAAAAATAAATTAAGGGAAA
9410 AAATTAAATAAAATACGAAAAAAGGAAAAAATAAAAAGGTAACAAAGTA
765 AAATTAAATAAAATAC-AAAAAAGG----AATAAAAAGGTAACAAAGTA
*** * ** * *
9459 AGAAAATAAAAAATTAGCGAATCAAAAAATATA-AAAAGACAAAATGAAAGCACATAGAAAAAAG
1 AGAAAATTTTAAA--A-CAAAGGAAAAAGTA-ACAAAA-A-AAAATGAAAGCACATAAAAAAAAG
9523 AAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAG
60 AAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAG
* *
9588 AATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACT
125 AATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACT
*
9653 ATAAACAAAGAAAGAAAATAAAATATAAAAATAGAAAAAGAAAAAAGATAAATAAAGCAC-AAAA
190 ATAAACAAAGAAAGAAAA-AAAA-AT--AAA-AG-AAAAGAAAAAGGATAAATAAAGCACAAAAA
9717 AAG-G---AAA-AAAAATACAACAAAAAATATAAAAAG
249 AAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAG
9750 GGCAAAAATT
Statistics
Matches: 999, Mismatches: 64, Indels: 95
0.86 0.06 0.08
Matches are distributed among these distances:
804 1 0.00
805 29 0.03
806 166 0.17
808 7 0.01
809 12 0.01
810 31 0.03
811 15 0.02
812 41 0.04
813 16 0.02
814 43 0.04
815 99 0.10
816 114 0.11
817 5 0.01
818 8 0.01
819 2 0.00
820 40 0.04
821 1 0.00
822 57 0.06
823 49 0.05
824 19 0.02
826 1 0.00
827 5 0.01
828 22 0.02
829 2 0.00
830 15 0.02
831 21 0.02
832 164 0.16
833 6 0.01
834 2 0.00
835 6 0.01
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (808 bp):
AGAAAATTTTAAAACAAAGGAAAAAGTAACAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAAA
AATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGAT
AAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAAC
AAAGAAAGAAAAAAAAATAAAAGAAAAGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAAC
AAAAATACAACAAAAAATATAAAAAGTAAGAAAAGAAAAAAGACAAAATTGAATAAAAATTTCAA
AAATGAAATGGAATGACAAAAAGAAAAAAATGTTTAAAAAATAAAAAAATTGAAAAACATATAAG
ACCTAACAATATAAAAAGTCAGACAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAG
TATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAATAGAATAGC
AAGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAAT
TAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAA
AGTTATTAAAAAATTACAAAGCAGAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGA
ACTTTATAAAAATTTCCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAATTAAATAAAATAC
AAAAAAGGAATAAAAAGGTAACAAAGTA
Found at i:9243 original size:16 final size:17
Alignment explanation
Indices: 9212--9245 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9202 ATAAAAAATT
*
9212 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
9229 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
9245 T
1 T
9246 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:9532 original size:815 final size:797
Alignment explanation
Indices: 7836--9749 Score: 2478
Period size: 832 Copynumber: 2.4 Consensus size: 797
7826 AGAAAATTTT
** * **
7836 AAAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAA-TTTGAAA
1 AAAACAAA-GAAAAAGCGAACAAAAAAAAAGAAAGCACATAAAAAAAAGAAGAAAAAGAAT-AAA
* *
7900 GGAGAAAAAGTTAATGAAAAATTATAAAAATGCAAAAGAGAATAACCAAGAATGATAAAAGAAAA
64 GGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGATAAAAGAAAA
7965 AAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAG-
129 AAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGA
* * * * * * *
8029 -AA-AAAAAAATGAAAGCAAACGAAA-AAGGATA-AATAAAGCACAAA-AAA--AGAGAAAAAAC
194 AAATAAAAAAAT-AAAG-AAA-AAAAGAAAGAAAGAAAAAAG-ATAAATAAAGCACAAAAAAAAC
*
8087 AAAAATACAACAAAAAATATAAAAAGTAAGAAAATAAAAAAGACAAAATGAAATAAAAATTTCAA
255 AAAAATACAACAAAAAATATAAAAAGTAAGAAAAGAAAAAAGACAAAATGAAATAAAAATTTCAA
*
8152 AAATGAAATGGAATGACAAAAAGGAAAAAATAGTTTAAAAATAAAAAATGAAAACATATAAGACC
320 AAATGAAATGGAATGACAAAAAGAAAAAAATAGTTTAAAAATAAAAAATGAAAACATATAAGACC
* * *
8217 TAACAATATAAAAAGTCATACAAAATTAAAAGAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
385 TAACAATATAAAAAGTCAGACAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
*
8282 AGAATTTAAAATAGAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAATAGAATAGCACGAAA
450 AGAATTTAAAACAGAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAATAGAATAG-AC----
*
8347 AGAATAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAATAAAAATTTTAAAACAACGA
510 ------AAATGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAATAAAAATTTTAAAACAACGA
* * * * *
8412 AAAAATTAAAGCAAGAAAAATGAAAGTATATGAAAAAAAATAAGAAGAAGGGAAATTGTGGAGGG
569 AAAAATTAAAACAAGAAAAATGAAAGTAGATGAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGG
8477 AAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAATAAGAAAAAAAT
634 AAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAATAAGAAAAAAAT
* *
8542 TGAACTTTATAAAAATTTCCTAAAATATAAATGAAAAATAAATTAAGGGAAAAAATTAAAATAAA
699 TGAACTTTATAAAAATTTCCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAATTAAAAAAAA
* ***
8607 CAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTT
764 CAAAAAGAAAAAAGTAACAAAGTAACAAAATAAG
* **
8641 AAAACAAAGGAAAAAGTGAACAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAA-TTTGAA
1 AAAACAAA-GAAAAAGCGAACAAAAAAAAA-GAAAGCACATAAAAAAAAGAAGAAAAAGAAT-AA
* *
8705 AGGAGAAAAAATTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAA
63 AGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGATAAAAGAAA
* *
8770 ACAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAACTTATGAAACTATAAACAAAGAAAG
128 AAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAG
8835 AAAATAAAAAAATAAAAGAAAAAAATGAAAGCAACAGAAAAAAGATAAATAAAGCACAAAAAAAA
193 AAAATAAAAAAAT-AAAGAAAAAAA-GAAAG-AA-AGAAAAAAGATAAATAAAGCACAAAAAAAA
* * *
8900 CAAAAGTACAACAAAAAATTATAAAAAGTAAGAAAAGAAAAAGGACAAAATTTG-AATATAAATT
254 CAAAAATACAACAAAAAA-TATAAAAAGTAAGAAAAGAAAAAAGACAAAA--TGAAATAAAAATT
8964 TCAAAAATGAAATGGAATGACAAAAAGAAAAAAAT-GTTTAAAAAATACAAAAAATTGAAAAACA
316 TCAAAAATGAAATGGAATGACAAAAAGAAAAAAATAGTTT-AAAAAT--AAAAAA-TG-AAAACA
*
9028 TATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATA
376 TATAAGACCTAACAATATAAAAAGTCAGAC--AAAATGAAAAAAGAGAAAAGTTAATGCAAAATA
* *
9093 AAAAAATTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATA
439 AAAAAAGTATGAGAATTT-AAAACAGAAATAAGAAATGAAAGGAAATTTGTAGG-AAAAAAAATA
* *
9158 GAATAG-C-AA-GAAAAGACAAAAGCTTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGA
502 GAATAGACAAATGAAAAGACAAAAGATTTGGAATAAAAAAC-AAAAAAT-AAAAATTTTAAAACA
9220 ACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACAAGAAGAAGGAAAATTG
565 ACGAAAAAATTAAAACAAG-AAAAATGAAAGTAGATG--AAAAAAAACAAGAAGAAGGAAAATTG
* *
9285 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG-AAAAAAATAAAAAAGATTCAAAAAATAAG
627 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGC-AAAAATAAG
* *
9349 AAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAAT
691 -AAAAAAATTGAACTTTATAAAAATTTCCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAAT
*
9414 TAAATAAAATACGAAAAAAGGAAAAAA-TAA-AAAGGTAACAAAGTAAG
755 TAAA-AAAA-AC--AAAAA-GAAAAAAGTAACAAA-GTAACAAAATAAG
* * *
9461 AAAATAAA-AAATTAGCGAATCAAAAAATATAAAAAGACAAAATGAAAGCACATAGAAAAAAGAA
1 AAAACAAAGAAA-AAGCGAA-C----------AAAA-A-AAAA-GAAAGCACATAAAAAAAAGAA
**
9525 GAAAAA-TTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGA
51 GAAAAAGAAT-AAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGA
* *
9589 ATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACTA
115 ATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTA
* *
9654 TAAACAAAGAAAGAAAAT---AAAAT--ATAAAAATAG-AA-AAAGAAAAAAGATAAATAAAGCA
180 TAAACAAAGAAAGAAAATAAAAAAATAAAGAAAAAAAGAAAGAAAGAAAAAAGATAAATAAAGCA
*
9712 CAAAAAAGGAAAAAAAATACAACAAAAAATATAAAAAG
245 CAAAAAA--AACAAAAATACAACAAAAAATATAAAAAG
9750 GGCAAAAATT
Statistics
Matches: 995, Mismatches: 61, Indels: 89
0.87 0.05 0.08
Matches are distributed among these distances:
805 28 0.03
806 157 0.16
807 3 0.00
808 5 0.01
809 15 0.02
810 28 0.03
811 14 0.01
812 41 0.04
813 16 0.02
814 43 0.04
815 99 0.10
816 114 0.11
817 5 0.01
818 11 0.01
819 10 0.01
820 59 0.06
821 35 0.04
822 59 0.06
823 51 0.05
824 18 0.02
825 1 0.00
826 7 0.01
829 5 0.01
830 4 0.00
831 1 0.00
832 166 0.17
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (797 bp):
AAAACAAAGAAAAAGCGAACAAAAAAAAAGAAAGCACATAAAAAAAAGAAGAAAAAGAATAAAGG
AGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATGATAAAAGAAAAAA
AGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAA
ATAAAAAAATAAAGAAAAAAAGAAAGAAAGAAAAAAGATAAATAAAGCACAAAAAAAACAAAAAT
ACAACAAAAAATATAAAAAGTAAGAAAAGAAAAAAGACAAAATGAAATAAAAATTTCAAAAATGA
AATGGAATGACAAAAAGAAAAAAATAGTTTAAAAATAAAAAATGAAAACATATAAGACCTAACAA
TATAAAAAGTCAGACAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATT
TAAAACAGAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAATAGAATAGACAAATGAAAAGA
CAAAAGATTTGGAATAAAAAACAAAAAATAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAA
AAATGAAAGTAGATGAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAA
TTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAATAAGAAAAAAATTGAACTTTATAAAAATT
TCCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAATTAAAAAAAACAAAAAGAAAAAAGTAA
CAAAGTAACAAAATAAG
Found at i:9965 original size:22 final size:21
Alignment explanation
Indices: 9936--9994 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
9926 AAGGGAAAGC
9936 AACAAAAGAATAAAAATGAAAA
1 AACAAAAGAATAAAAAT-AAAA
* ***
9958 GACAAAAGAATTGGAATAAAA
1 AACAAAAGAATAAAAATAAAA
*
9979 AACAAAAAAATAAAAA
1 AACAAAAGAATAAAAA
9995 ATTTTAAAAC
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.75, C:0.05, G:0.10, T:0.10
Consensus pattern (21 bp):
AACAAAAGAATAAAAATAAAA
Found at i:10580 original size:19 final size:18
Alignment explanation
Indices: 10554--10596 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
10544 AAAAATTTTG
10554 AGAA-AAAAAAAGAGAAAA
1 AGAAGAAAAAAAGA-AAAA
*
10572 AGAAGAAAAAAATAAAAA
1 AGAAGAAAAAAAGAAAAA
10590 ATGAAGA
1 A-GAAGA
10597 GGCAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (18 bp):
AGAAGAAAAAAAGAAAAA
Found at i:10861 original size:20 final size:20
Alignment explanation
Indices: 10837--10889 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
10827 TAAACAAAGA
10837 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
10856 ATAGAAAA-AGAAAAATACAAT
1 A-AGAAAATA-AAAAATACAAT
10877 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
10890 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:10870 original size:27 final size:25
Alignment explanation
Indices: 10836--10889 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
10826 ATAAACAAAG
10836 AAAGAAAATA-AAAAATAAATATAGAA
1 AAAGAAAATACAAAAA-AAATATA-AA
*
10862 AAAGAAAAATACAATAAAAATATAAA
1 AAAG-AAAATACAAAAAAAATATAAA
10888 AA
1 AA
10890 GGACAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (25 bp):
AAAGAAAATACAAAAAAAATATAAA
Found at i:11129 original size:23 final size:21
Alignment explanation
Indices: 11097--11138 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
11087 TTGTGGGGGA
11097 AAAAAAGAAAAGCAAGAAAGAAT
1 AAAAAAGAAAAG-AA-AAAGAAT
*
11120 AAAAATGAAAAGAAAAAGA
1 AAAAAAGAAAAGAAAAAGA
11139 TTTGGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 2 0.11
23 11 0.61
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (21 bp):
AAAAAAGAAAAGAAAAAGAAT
Found at i:11164 original size:28 final size:27
Alignment explanation
Indices: 11116--11169 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
11106 AAGCAAGAAA
* *
11116 GAATAAAAATGAAAAGAAAAAGATTTG
1 GAATAAAAAAGAAAAGAAAAAAATTTG
11143 GAATAAAAACAGAAAA-ATAAAAAATTT
1 GAATAAAAA-AGAAAAGA-AAAAAATTT
11170 TAAAACAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.67, C:0.02, G:0.13, T:0.19
Consensus pattern (27 bp):
GAATAAAAAAGAAAAGAAAAAAATTTG
Found at i:11628 original size:13 final size:12
Alignment explanation
Indices: 11607--11685 Score: 54
Period size: 13 Copynumber: 6.3 Consensus size: 12
11597 ACAAAGAAAG
*
11607 AAAATAAAAAATA
1 AAAAGAAAAAA-A
11620 AAAAGAAAAAAA
1 AAAAGAAAAAAA
* *
11632 TGAAAGCAAAAGAA
1 -AAAAG-AAAAAAA
*
11646 AAAAG--ATAAA
1 AAAAGAAAAAAA
*
11656 TAAAGCAAAAAAA
1 AAAAG-AAAAAAA
11669 AAAAGAAAAAACA
1 AAAAGAAAAAA-A
11682 AAAA
1 AAAA
11686 TACAACAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
10 7 0.14
12 7 0.14
13 31 0.61
14 6 0.12
ACGTcount: A:0.81, C:0.04, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:11646 original size:41 final size:40
Alignment explanation
Indices: 11599--11676 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 40
11589 AACTATAAAC
*
11599 AAAGAAAGAAA-ATAAA-AAATAAAAAGAAAAAAATGAAAGCA
1 AAAGAAA-AAAGATAAATAAAGAAAAA-AAAAAAA-GAAAGCA
*
11640 AAAGAAAAAAGATAAATAAAGCAAAAAAAAAAAGAAA
1 AAAGAAAAAAGATAAATAAAGAAAAAAAAAAAAGAAA
11677 AAACAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
40 7 0.21
41 19 0.58
42 7 0.21
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (40 bp):
AAAGAAAAAAGATAAATAAAGAAAAAAAAAAAAGAAAGCA
Found at i:11664 original size:23 final size:24
Alignment explanation
Indices: 11629--11674 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
11619 AAAAAGAAAA
*
11629 AAATGAAAGCAAAAGAAAAAAGAT
1 AAATGAAAGCAAAAAAAAAAAGAT
11653 AAAT-AAAGCAAAAAAAAAAAGA
1 AAATGAAAGCAAAAAAAAAAAGA
11675 AAAAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.76, C:0.04, G:0.13, T:0.07
Consensus pattern (24 bp):
AAATGAAAGCAAAAAAAAAAAGAT
Found at i:11675 original size:30 final size:30
Alignment explanation
Indices: 11639--11697 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
11629 AAATGAAAGC
* *
11639 AAAAGAAAAAAGATAAATA-AAGCAAAAAAA
1 AAAAGAAAAAACAAAAATACAA-CAAAAAAA
11669 AAAAGAAAAAACAAAAATACAACAAAAAA
1 AAAAGAAAAAACAAAAATACAACAAAAAA
11698 TATAAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.81, C:0.07, G:0.07, T:0.05
Consensus pattern (30 bp):
AAAAGAAAAAACAAAAATACAACAAAAAAA
Found at i:12782 original size:23 final size:23
Alignment explanation
Indices: 12728--12791 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
12718 AAAGAAAGAA
12728 AAAAAAAAAAAAAAAATGAAAGC
1 AAAAAAAAAAAAAAAATGAAAGC
* * *
12751 AAACGAAAAAAGATAAAT-AAAGC
1 AAA-AAAAAAAAAAAAATGAAAGC
*
12774 ACAAAAAAAGAGAAAAAA
1 A-AAAAAAA-AAAAAAAA
12792 CAAAAATACA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.78, C:0.06, G:0.11, T:0.05
Consensus pattern (23 bp):
AAAAAAAAAAAAAAAATGAAAGC
Found at i:13444 original size:828 final size:808
Alignment explanation
Indices: 12563--14451 Score: 2724
Period size: 828 Copynumber: 2.3 Consensus size: 808
12553 AAGGAAAACG
*
12563 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
12627 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
12692 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAAAAAAAATGAAAGCAAACGA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAATAAAAATGAAA--AAA-GA
12757 AAAAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAA
193 AAAAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAA
* *
12822 GAAAATAAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAG-GA
258 GAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAA
*
12885 AAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAT
323 AAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAG
*
12950 ACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAA
388 ACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAA
13015 ATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAGAATAAAAATGAAAA
453 ATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG--C------------AA-GAAAA
* * *
13080 GACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAGCGAAAAAATTAAAGCA
503 GACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACA
*
13144 AG-AAAAATGAAAGTATATGAAAAAAAACAAGAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTA
568 AGAAAAAATGAAAGTAGATGAAAAAAAAC---AAGAAGGGAAATTGTGAAGGGAAAAAGTTATTA
13208 AAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTAT
630 AAAAATTACAAAGCAG--AAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTAT
13273 AAAAATTTTCT-AAA-AT-AT-AAAT-A-AAAAATAAATTAAGGGAAAAAATTAAAATAAACAAA
693 AAAAATTTTCTAAAATATAATAAAATAAGAAAAATAAATTAAGGGAAAAAATT-AAAT-AA-AAA
* *
13332 AAGAAAAAAGTAACAAAGTAAGAAAATTTA-AAACAAAGGAAAA-AGTGAACAAA-A-AAAA
755 AAGAAAAAAGGAA-AAAATAA-AAAA-TTAGAAACAAA--AAAATA-T-AA-AAAGACAAAA
*
13390 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
13455 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* *
13520 TTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAA-GAAAAAAATGAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAATAAAAATG-AAAAAA-GAA
* * * *
13584 AGCAACAGA-AAA-AAAG-ATAAATAAAGCACAAAAAAAACAAAAGTACAACAAAAAATTATAAA
194 A--AA-AGATAAATAAAGCACAAA-AAA--AGAGAAAAAACAAAAATACAACAAAAAA-TATAAA
* *
13646 AAGTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAA
252 AAGTAAGAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAA
*
13711 AAGAAAAAAAAATGGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAA
317 AAGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAA
* *
13776 AGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATAAAAAAATTATGAGAATTTAAAA
382 AGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAA
*
13841 ACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGC
447 ACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGA
*
13906 TTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAAT
512 TTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAAT
13971 GAAAGTAGATGAAAAAAAACAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAA
577 GAAAGTAGATGAAAAAAAACAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAA
* * *
14036 GTAGAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAATTGAACTTTATAAAACTTTTCTAAA
642 GCAGAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAATTTTCTAAA
* *
14101 ATATAAATAAAAAAATAAATGAAAAATAAATTAAGGGAAAAAATTAAATAAAATACGAAAAAAGG
707 ATAT-AAT---AAAAT-AA-GAAAAATAAATTAAGGGAAAAAATTAAATAAAAAAAGAAAAAAGG
*
14166 AAAAAATAAAAAATTAGCGAATCAAAAAAATATAAAAAGACAAAA
766 AAAAAATAAAAAATTA--GAAACAAAAAAATATAAAAAGACAAAA
*
14211 TGAAAGCACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
14276 TGCAATAGAAAATAACCAAGAATAATAAAAG-AAAAAAGATAG-AAAAT-AAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * * *
14338 TTATAAAAATTTATAAAACTATAAACAAAGAAAG-AAAATAAAATATAAAAAT-AGAAAAAGATA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAATAAAAATGA-AAAAAGAAA
14401 AAAGATAAATAAAGCAC--AAAAAG-G---AAA-AAAAATACAACAAAAAATATAAAA
195 AAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAA
14452 GGGGCAAAAA
Statistics
Matches: 976, Mismatches: 50, Indels: 94
0.87 0.04 0.08
Matches are distributed among these distances:
805 7 0.01
806 16 0.02
807 3 0.00
811 1 0.00
813 6 0.01
814 62 0.06
815 7 0.01
816 55 0.06
817 54 0.06
818 82 0.08
819 33 0.03
820 16 0.02
821 105 0.11
822 11 0.01
823 19 0.02
824 3 0.00
825 4 0.00
826 35 0.04
827 19 0.02
828 171 0.18
829 28 0.03
830 38 0.04
831 33 0.03
832 168 0.17
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (808 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAATAAAAATGAAAAAAGAAAA
AAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAA
AAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAA
AAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACA
AAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATA
AGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATA
AAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGA
TGAAAAAAAACAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAA
ATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAATAA
AATAAGAAAAATAAATTAAGGGAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAAAAAATT
AGAAACAAAAAAATATAAAAAGACAAAA
Found at i:13968 original size:16 final size:17
Alignment explanation
Indices: 13937--13970 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
13927 ATAAAAAATT
*
13937 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
13954 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
13970 T
1 T
13971 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:14064 original size:832 final size:800
Alignment explanation
Indices: 12563--14422 Score: 2515
Period size: 832 Copynumber: 2.3 Consensus size: 800
12553 AAGGAAAACG
*
12563 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
12627 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAG-AAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * *
12692 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAAAAAAAATGAAAGCAAACGA
130 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAATGAAAGAAAACGA
* *
12757 AAAAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAA
195 AAAAAGATAAATAAAGCACAAAAAAACAAAAAAAACAAAAATACAACAAAAAATATAAAAAGTAA
* *
12822 GAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGGAAA
260 GAAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAA
*
12887 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCATAC
325 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGAC
*
12952 AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAAT
390 AAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAAT
13017 AAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAGAATAAAAATGAAAAGA
455 AAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG-AC-----------AAATGAAAAGA
* * *
13082 CAAAATATTTGGAATAAAAAACAAAAAAATAAAAATTTTAAAACAGCGAAAAAATTAAAGCAAGA
508 CAAAAGATTTGGAATAAAAAACAAAAAAATAAAAATTTTAAAACAACGAAAAAATTAAAACAAGA
*
13147 AAAATGAAAGTATATGAAAAAAAACAAGAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAA
573 AAAATGAAAGTAGATGAAAAAAAAC-A-AAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAA
* **
13212 ATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAAC-TTTATAAA
636 ATTACAAAGCAGAAAAAAAAT----AAGA--AAAAAAAT-AG-AAAAAAATAAAACTTTTATAAA
** * *
13276 A-AT-TTTCTAAAATATAAATAAAAAATAAATTAAGGGAAAAAATTAAAATAAACAAAAAGAAAA
693 ATATAAAT-AAAAAAATAAATAAAAAATAAATTAAGGGAAAAAATT-AAAT-AA-AAAAAGAAAA
* *
13339 AAGTAACAAAGTAAGAAAATTTA-AAACAAAGGAAAA-AGTGAACAAA-A-AAAA
754 AAGGAA-AAAATAA-AAAA-TTAGAAACAAA--AAAATA-T-AA-AAAGACAAAA
*
13390 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
13455 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAA-AAGATAGAAAAATAAAAAATTCCAAAACT
* *
13520 TTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAA-GAAA-AAAATGA
130 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAATGAAAGAAAACGA
* *
13583 AAGCAACAGA-AAA-AAAG-ATAAATAAAGCACAAAAAAAACAAAAGTACAACAAAAAATTATAA
195 AA--AA-AGATAAATAAAGCACAAA-AAA--ACAAAAAAAACAAAAATACAACAAAAAA-TATAA
* *
13645 AAAGTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAA
253 AAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAA
*
13710 AAAGAAAAAAAAATGGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAA
317 AAAG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAA
* *
13775 AAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATAAAAAAATTATGAGAATTTAAA
381 AAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAA
13840 AACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG-C-AA-GAAAAGACAA
446 AACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGACAAATGAAAAGACAA
* *
13902 AAGCTTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAA
511 AAGATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAACGAAAAAATTAAAACAAG-AA
13967 AAATGAAAGTAGATGAAAAAAAAC-AAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATT
574 AAATGAAAGTAGATGAAAAAAAACAAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATT
* * *
14031 ACAAAGTAGAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAATTGAACTTTATAAAACTTTT
639 ACAAAGCAG-AAAAA-AAATAAGA--AAAAAAAT-AG----AAAA---AA----ATAAAACTTTT
* * * *
14096 CTAAAATATAAATAAAAAAATAAATGAAAAATAAATTAAGGGAAAAAATTAAATAAAATACGAAA
688 ATAAAATATAAATAAAAAAATAAATAAAAAATAAATTAAGGGAAAAAATTAAATAAAAAAAGAAA
*
14161 AAAGGAAAAAATAAAAAATTAGCGAATCAAAAAAATATAAAAAGACAAAA
753 AAAGGAAAAAATAAAAAATTA--GAAACAAAAAAATATAAAAAGACAAAA
*
14211 TGAAAGCACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
14276 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAGATAG-AAAAT-AAAAATTCCAAAACTT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
* * * *
14339 TATAAAAATTTATAAAACTATAAACAAAGAAAGAAAAT-AAAATATAAAAAT---AGAAAAAGAT
131 TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAATGAAAGAAAACGAA
14400 AAAAGATAAATAAAGCACAAAAA
196 AAAAGATAAATAAAGCACAAAAA
14423 GGAAAAAAAA
Statistics
Matches: 941, Mismatches: 53, Indels: 90
0.87 0.05 0.08
Matches are distributed among these distances:
813 3 0.00
814 21 0.02
815 7 0.01
816 59 0.06
817 56 0.06
818 88 0.09
819 33 0.04
820 15 0.02
821 109 0.12
822 7 0.01
823 19 0.02
824 7 0.01
825 12 0.01
826 47 0.05
827 27 0.03
828 164 0.17
829 28 0.03
830 38 0.04
831 33 0.04
832 168 0.18
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (800 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAATGAAAGAAAACGAA
AAAAGATAAATAAAGCACAAAAAAACAAAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAG
AAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAA
AAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACA
AAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATA
AGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGACAAATGAAAAGACAAAAGATTTGGA
ATAAAAAACAAAAAAATAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAATGAAAGTAG
ATGAAAAAAAACAAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAA
AAAAATAAGAAAAAAAATAGAAAAAAATAAAACTTTTATAAAATATAAATAAAAAAATAAATAAA
AAATAAATTAAGGGAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAAAAAATTAGAAACAA
AAAAATATAAAAAGACAAAA
Found at i:14408 original size:23 final size:24
Alignment explanation
Indices: 14358--14414 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
14348 TTATAAAACT
*
14358 ATAAACAAAGAAAGAAAATAAAAT
1 ATAAACAAAGAAAGAAAATAAAAG
*
14382 ATAAA-AATAGAAA-AAGATAAAAG
1 ATAAACAA-AGAAAGAAAATAAAAG
*
14405 ATAAATAAAG
1 ATAAACAAAG
14415 CACAAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 17 0.59
24 12 0.41
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.14
Consensus pattern (24 bp):
ATAAACAAAGAAAGAAAATAAAAG
Found at i:14895 original size:17 final size:17
Alignment explanation
Indices: 14873--14919 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
14863 TTTAAAATAT
*
14873 AAATAAAATAAATGAAA
1 AAATAAAATAAAGGAAA
* *
14890 AAATAAATTAAGGGAAA
1 AAATAAAATAAAGGAAA
14907 AAATAAAAATAAA
1 AAAT-AAAATAAA
14920 CAAAAAGTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
AAATAAAATAAAGGAAA
Found at i:15566 original size:20 final size:20
Alignment explanation
Indices: 15542--15594 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
15532 TAAACAAAGA
15542 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
15561 ATAGAAAAGAAAAAATACAAT
1 A-AGAAAATAAAAAATACAAT
15582 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
15595 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 4 0.14
20 21 0.72
21 4 0.14
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:15575 original size:27 final size:28
Alignment explanation
Indices: 15545--15604 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
15535 ACAAAGAAAG
15545 AAAATA-AAAAATAAATATAGAAAA-GA-A
1 AAAATACAAAAA-AAATATA-AAAAGGACA
*
15572 AAAATACAATAAAAATATAAAAAGGACA
1 AAAATACAAAAAAAATATAAAAAGGACA
15600 AAAAT
1 AAAAT
15605 TGAATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 4 0.14
27 15 0.52
28 10 0.34
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (28 bp):
AAAATACAAAAAAAATATAAAAAGGACA
Found at i:15582 original size:25 final size:25
Alignment explanation
Indices: 15541--15593 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
15531 ATAAACAAAG
*
15541 AAAGAAAATAAAAAATAAATATAGA
1 AAAGAAAATAAAAAATAAAAATAGA
* *
15566 AAAGAAAA-AATACAATAAAAATATA
1 AAAGAAAATAA-AAAATAAAAATAGA
15591 AAA
1 AAA
15594 AGGACAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (25 bp):
AAAGAAAATAAAAAATAAAAATAGA
Found at i:15613 original size:27 final size:27
Alignment explanation
Indices: 15557--15615 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
15547 AATAAAAAAT
15557 AAATATAGAAAAGAAAAAATACAATAA
1 AAATATAGAAAAGAAAAAATACAATAA
**
15584 AAATATA-AAAAGGACAAAAATTGAATAA
1 AAATATAGAAAA-GA-AAAAATACAATAA
15612 AAAT
1 AAAT
15616 TTCAAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 9 0.32
28 15 0.54
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.17
Consensus pattern (27 bp):
AAATATAGAAAAGAAAAAATACAATAA
Found at i:16370 original size:23 final size:19
Alignment explanation
Indices: 16326--16383 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
16316 ATAAAAAATA
16326 AAAAGAAAAAAATGAAAGC
1 AAAAGAAAAAAATGAAAGC
16345 AAAAGAAAAAAGATAAGTAAAGC
1 AAAAGAAAAAA-AT--G-AAAGC
*
16368 AAAA-AAAAAAAAGAAA
1 AAAAGAAAAAAATGAAA
16384 AACAAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
18 3 0.09
19 12 0.35
20 2 0.06
21 1 0.03
22 7 0.21
23 9 0.26
ACGTcount: A:0.78, C:0.03, G:0.14, T:0.05
Consensus pattern (19 bp):
AAAAGAAAAAAATGAAAGC
Found at i:16389 original size:19 final size:19
Alignment explanation
Indices: 16313--16391 Score: 52
Period size: 19 Copynumber: 4.2 Consensus size: 19
16303 ACAAAGAAAG
* * *
16313 AAAATAAAAAATAAAAAGA
1 AAAAAAAAAAAGAAAAACA
** * *
16332 AAAAAATGAAAGCAAAA-G
1 AAAAAAAAAAAGAAAAACA
* * * *
16350 AAAAAAGATAAGTAAAGCA
1 AAAAAAAAAAAGAAAAACA
16369 AAAAAAAAAAAGAAAAACA
1 AAAAAAAAAAAGAAAAACA
16388 AAAA
1 AAAA
16392 TACAACAAAA
Statistics
Matches: 43, Mismatches: 16, Indels: 2
0.70 0.26 0.03
Matches are distributed among these distances:
18 12 0.28
19 31 0.72
ACGTcount: A:0.80, C:0.04, G:0.10, T:0.06
Consensus pattern (19 bp):
AAAAAAAAAAAGAAAAACA
Found at i:17422 original size:18 final size:17
Alignment explanation
Indices: 17387--17510 Score: 61
Period size: 17 Copynumber: 6.9 Consensus size: 17
17377 TTATGAAACT
* *
17387 ATAAACAAAGAAAGAAA
1 ATAAAAAAAGAAAAAAA
17404 ATAAAAAAAGGAAAAAAA
1 ATAAAAAAA-GAAAAAAA
* **
17422 ATGAAAGCAAACGAAAAAGG
1 AT-AAA--AAAAGAAAAAAA
*
17442 ATAAATAAAGCACAAAAAA
1 ATAAAAAAAG-A-AAAAAA
* * *
17461 AGAGAAAAA-ACAAAAA
1 ATAAAAAAAGAAAAAAA
* * *
17477 ATATAAAAAGTAAGAAA
1 ATAAAAAAAGAAAAAAA
*
17494 GTAAAAAAAGACAAAAA
1 ATAAAAAAAGA-AAAAA
17511 TTGAATAAAA
Statistics
Matches: 77, Mismatches: 22, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
16 12 0.16
17 24 0.31
18 14 0.18
19 16 0.21
20 8 0.10
21 3 0.04
ACGTcount: A:0.74, C:0.06, G:0.13, T:0.07
Consensus pattern (17 bp):
ATAAAAAAAGAAAAAAA
Found at i:17787 original size:28 final size:28
Alignment explanation
Indices: 17733--17787 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
17723 AGCACGAAAA
* *
17733 GAATAAAAATAAAAAGACAAAATATTTG
1 GAATAAAAACAAAAAAACAAAATATTTG
*
17761 GAATAAAAAACAAAAAAATAAAA-ATTT
1 GAAT-AAAAACAAAAAAACAAAATATTT
17788 TAAAACATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (28 bp):
GAATAAAAACAAAAAAACAAAATATTTG
Found at i:18098 original size:824 final size:802
Alignment explanation
Indices: 17238--19045 Score: 2707
Period size: 824 Copynumber: 2.2 Consensus size: 802
17228 AAGGAAAACG
*
17238 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
17302 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
**
17367 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAA-AAGGA-AAAAAAATGAAAGC
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAATAAAAAGAAAAAAATGAAAGC
* *
17430 AA-ACG-AAAAAGGATAAATAAAGCACAAAAAAAGA-GAAA-A-AACAAAAAA-TATAAAAAGTA
196 AACA-GAAAAAAAGATAAATAAAGCACAAAAAAA-ACAAAAGACAACAAAAAATTATAAAAAGTA
*
17489 AG-AAAGTAAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAGG
259 AGAAAAG-AAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGA
17552 AAAAAAACAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACATAACAATATAAAAAGTCA
323 AAAAAAACAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACATAACAATATAAAAAGTCA
*
17617 TACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGA
388 GACAAAAAA-TAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAGTATGAGAA-TTAAAAACAGA
17682 AATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAGAATAAAAATAAAA
450 AATAAGAAATGAAAGGAAATTTGT-GGAAAAAAAATAGAATAG--C---AAG----------AAA
* * *
17747 AGACAAAATATTTGGAATAAAAAACAAAAAA-ATAAAAATTTTAAAACATCGAAAAAATTAAAGC
499 AGACAAAAGATTTGGAATAAAAAACAAAAAATA-AAAAATTTTAAAACAACG-AAAAATTAAAAC
* *
17811 AAG-AAAAATGAAAGTATATG-AAAAAAAACAAGAAGAAGGGAAATTGTGAAGGGAAAAAGTTAT
562 AAGAAAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTAT
*
17874 TAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTTGAACTT
627 TAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTT
17939 TATAAAAATTTTCTAAAATATAAAT-AAAAAATAAATTAAGGGAAAAAATTAAAATAAACAAAAA
692 TATAAAAATTTTCTAAAATATAAATAAAAAAATAAATTAAGGGAAAAAATT-AAAT--A-AAAAA
* **
18003 GAAAAAAGTAACAAAGTAAGAAAATT-TTAAAACAAAGGAAAAAGTGAACAAAAAAAAA
753 GAAAAAAG-AA-AAAAT-A-AAAATTAGCAAAACAAA--AAAAA-T-AA-AAAAAAAAA
*
18061 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
18126 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
**
18191 TTATAAAAACATATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAT--AAAAATAAAAAGAAAAAAATGAAA
18256 GCAACAGAAAAAAAGATAAATAAAGCACAAAAAAAACAAAAGTACAACAAAAAATTATAAAAAGT
194 GCAACAGAAAAAAAGATAAATAAAGCACAAAAAAAACAAAAG-ACAACAAAAAATTATAAAAAGT
* *
18321 AAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGA
258 AAGAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGA
** *
18386 AAAAAAATGGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCA
323 AAAAAAACAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACATAACAATATAAAAAGTCA
* * *
18451 GACAAAAAATGAAAAAGAGAAAAGTTAATGCAAGATAAAAAATTATGAGAATTAAAAACAGAAAT
388 GACAAAAAATAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGTATGAGAATTAAAAACAGAAAT
*
18516 AAGAAATGAAAGGAAATTTGTGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATA
453 AAGAAATGAAAGGAAATTTGTGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATA
*
18581 AAAAACAAAAAATAAAAAATTTTAAAAGAACGAAAAATTAAAACAAGAAAAAATGAAAGTAGATG
518 AAAAACAAAAAATAAAAAATTTTAAAACAACGAAAAATTAAAACAAGAAAAAATGAAAGTAGATG
*
18646 AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAA
583 AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAA
* *
18711 AAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATAT
648 AAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATAT
* *
18776 AAATAAAAAAATAAATTAAGGGAAAAAATTAAATAAATACGAAAAAAGAAAAAATAAAAATTAGC
713 AAATAAAAAAATAAATTAAGGGAAAAAATTAAATAAAAAAGAAAAAAGAAAAAATAAAAATTAGC
* * * * *
18841 GAATCAAAAAATATAAAAAGACAAA
778 AAAACAAAAAAAATAAAAAAAAAAA
*
18866 TGAAAGCACATAGAAAAAAGAAG-AAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTAT-AAAA
* *
18930 ATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAAT-AAAAATTCCAAAAC
65 ATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAAC
*
18994 TTTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAATAAAATATAAAAA
130 TTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAA-ATAAAAA
19046 TAGAAAAAGA
Statistics
Matches: 915, Mismatches: 49, Indels: 62
0.89 0.05 0.06
Matches are distributed among these distances:
802 4 0.00
803 7 0.01
804 86 0.09
805 80 0.09
806 2 0.00
807 1 0.00
808 4 0.00
809 6 0.01
810 7 0.01
811 4 0.00
812 2 0.00
813 11 0.01
814 15 0.02
815 64 0.07
816 133 0.15
817 25 0.03
823 11 0.01
824 151 0.17
825 3 0.00
826 5 0.01
827 3 0.00
828 19 0.02
829 30 0.03
830 18 0.02
831 36 0.04
832 23 0.03
833 58 0.06
834 107 0.12
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (802 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAATAAAAAGAAAAAAATGAAAGC
AACAGAAAAAAAGATAAATAAAGCACAAAAAAAACAAAAGACAACAAAAAATTATAAAAAGTAAG
AAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAA
AAAACAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACATAACAATATAAAAAGTCAGAC
AAAAAATAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGTATGAGAATTAAAAACAGAAATAAG
AAATGAAAGGAAATTTGTGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAA
AACAAAAAATAAAAAATTTTAAAACAACGAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAA
AAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAA
AATAAAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAA
TAAAAAAATAAATTAAGGGAAAAAATTAAATAAAAAAGAAAAAAGAAAAAATAAAAATTAGCAAA
ACAAAAAAAATAAAAAAAAAAA
Found at i:19065 original size:23 final size:24
Alignment explanation
Indices: 19015--19071 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
19005 TTATAAAACT
*
19015 ATAAACAAAGAAAGAAAATAAAAT
1 ATAAACAAAGAAAGAAAATAAAAG
*
19039 ATAAA-AATAGAAA-AAGATAAAAG
1 ATAAACAA-AGAAAGAAAATAAAAG
*
19062 ATAAATAAAG
1 ATAAACAAAG
19072 CACAAAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 17 0.59
24 12 0.41
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.14
Consensus pattern (24 bp):
ATAAACAAAGAAAGAAAATAAAAG
Found at i:19584 original size:17 final size:17
Alignment explanation
Indices: 19532--19585 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
19522 TTTAAAATAT
19532 AAATAAAAATAAATGAAA
1 AAATAAAAATAAA-GAAA
* *
19550 AAAT-AAATTAAGGGAAA
1 AAATAAAAATAA-AGAAA
*
19567 AAATAAAAATAAACAAA
1 AAATAAAAATAAAGAAA
19584 AA
1 AA
19586 GTAACAAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (17 bp):
AAATAAAAATAAAGAAA
Found at i:19956 original size:19 final size:19
Alignment explanation
Indices: 19934--19972 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
19924 AATTTTGAGA
19934 AAAAAAAGAGAAAAA-GAAG
1 AAAAAAAGA-AAAAATGAAG
*
19953 AAAAAAATAAAAAATGAAG
1 AAAAAAAGAAAAAATGAAG
19972 A
1 A
19973 GGCAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAAAAAGAAAAAATGAAG
Found at i:20238 original size:20 final size:20
Alignment explanation
Indices: 20214--20267 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
20204 TAAACAAAGA
20214 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
20233 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
20255 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
20268 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:20242 original size:26 final size:26
Alignment explanation
Indices: 20213--20288 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
20203 ATAAACAAAG
*
20213 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
20239 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
20265 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
20289 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:20260 original size:28 final size:26
Alignment explanation
Indices: 20195--20288 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
20185 ATAAAAATTT
*
20195 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
20224 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
20253 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
20281 ATAAAAAT
1 ATAAAAAT
20289 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:22063 original size:17 final size:16
Alignment explanation
Indices: 22037--22172 Score: 53
Period size: 17 Copynumber: 8.1 Consensus size: 16
22027 TTATGAAACT
*
22037 ATAAACAAAGAAAGAAA
1 ATAAAAAAAGAAA-AAA
22054 ATAAAAAAAGAAAAAA
1 ATAAAAAAAGAAAAAA
** * **
22070 A-AATGAAAGCAAACG
1 ATAAAAAAAGAAAAAA
* *
22085 A-AAAAAGATAAATAAA
1 ATAAAAAAAGAAA-AAA
*
22101 GCACAAAAAAAGAGAAAAA
1 --ATAAAAAAAGA-AAAAA
*
22120 ACAAAAATACA-ACAAAAA
1 ATAAAAA-A-AGA-AAAAA
* *
22138 ATATAAAAAGTAAGAAA
1 ATAAAAAAAG-AAAAAA
*
22155 AGAAAAAAAGAAAAAA
1 ATAAAAAAAGAAAAAA
22171 AT
1 AT
22173 TGAATAAAAA
Statistics
Matches: 87, Mismatches: 23, Indels: 19
0.67 0.18 0.15
Matches are distributed among these distances:
15 16 0.18
16 12 0.14
17 32 0.37
18 14 0.16
19 11 0.13
20 2 0.02
ACGTcount: A:0.76, C:0.06, G:0.10, T:0.07
Consensus pattern (16 bp):
ATAAAAAAAGAAAAAA
Found at i:22642 original size:12 final size:11
Alignment explanation
Indices: 22615--22649 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
22605 AAAAATTTTC
*
22615 TAAAATATAAA
1 TAAAAAATAAA
22626 TAAAAAATAAA
1 TAAAAAATAAA
22637 TGAAAAAATAAA
1 T-AAAAAATAAA
22649 T
1 T
22650 TAAGGGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:23126 original size:862 final size:853
Alignment explanation
Indices: 21888--23488 Score: 2673
Period size: 862 Copynumber: 1.9 Consensus size: 853
21878 AAGGAAAACG
* *
21888 TGAAAGCACATAAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
1 TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAAT
*
21953 GCAATAGAAAATAACTAAGAATGATAAAAGAAAAAAAGATAGAAAAATTAAAAATTCCAAAACTT
66 GCAATAGAAAATAACCAAGAATGATAAAAGAAAAAAAGATAGAAAAATTAAAAATTCCAAAACTT
*
22018 TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAAGAAAAAAAAATGAAAGCAAA
131 TATAAAAACTTATGAAACTATAAACAAAGAAAGAAAAT-AAAAAAGAAAAAAAAATGAAAGCAAA
* *
22083 CGAAAAAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAG
195 CGAAAAAAGATAAATAAAGCACAAAAAAACAAAAAAAACAAAAATACAACAAAAAATATAAAAAG
*
22148 TAAGAAAAGAAAAAAAGAAAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGG
260 TAAGAAAAGAAAAAAAGAAAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGA
*
22213 AAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCA
325 AAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAAATAAGACCTAACAATATAAAAAGTCA
* *
22278 TACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGA
390 GACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGA
22343 AATAAGAAATGAAAGGAAATTTGTGGG-AAAAAAAATAGAATAGCACGAAAAGAATAAAAATGAA
455 AATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAG--C------------AA-GAA
* * *
22407 AAGACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAGCGAAAAAATTAAAG
505 AAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAA
* *
22471 CAAG-AAAAATGAAAGTATATGAAAA-AAAAACAAGAAGAAGGGAAATTGTGAAGGGAAAAAGTT
570 CAAGAAAAAATGAAAGTAGATGAAAAGAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTT
*
22534 ATTAAAAAATCACAAAGTAGAAAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAA-TTGA
635 ATCAAAAAATCACAAAGTAG-AAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTTGA
22598 ACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAT
699 ACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAT
22663 TAAAATAAACAAATAGAAAAAAGTAACAAAGTAAGAAAATAAAATAAAGTAAGAAAATTTTAAAA
764 TAAAATAAACAAATAGAAAAAAGTAACAAAGTAAGAAAATAAAATAAAGTAAGAAAATTTTAAAA
22728 CAAAGGAAAAAGTGAACAAAAAAAA
829 CAAAGGAAAAAGTGAACAAAAAAAA
22753 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACAT-AAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
* *
22818 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAA-TAAAATATTCCAAAAC
65 TGCAATAGAAAATAACCAAGAATGATAAAAGAAAAAAAGATAGAAAAATTAAAA-ATTCCAAAAC
22882 TTTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAAT-AAAAAG-AAAAAAAATGAAAGC-A
129 TTTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAGAAAAAAAAATGAAAGCAA
*
22944 ACAGAAAAAAGATAAATAAAGCACAAAAAAACAAAAAAAAC-AAAATACAACAAAAATTATAAAA
194 AC-GAAAAAAGATAAATAAAGCACAAAAAAACAAAAAAAACAAAAATACAACAAAAAATATAAAA
* * * *
23008 AGTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAATTTCAAAAATGAAATGGAATGACAAAAA
258 AGTAAGAAAAGAAAAAAAGAAAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAA
23073 GAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAAATAAGACCTAACAATATAAAAAGT
323 GAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAAATAAGACCTAACAATATAAAAAGT
* * *
23138 CAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATAAAAAAATTATGAGAATTTAAATACA
388 CAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACA
*
23203 GAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTT
453 GAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATT
* *
23268 TGGAATAAAAAACCAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGA
518 TGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGA
*
23333 AAGTAGATGAAAAGAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATCAAAAAATTAC
583 AAGTAGATGAAAAGAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATCAAAAAATCAC
*
23398 AAAGTAGAAAAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAATTTGAACTTTATAAAAATT
648 AAAGTAGAAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTTGAACTTTATAAAAATT
23463 TTCTAAAATATAAATAAAAAATAAAT
713 TTCTAAAATATAAATAAAAAATAAAT
23489 CAAGGAAAAA
Statistics
Matches: 697, Mismatches: 31, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
848 34 0.05
849 33 0.05
850 58 0.08
851 99 0.14
861 1 0.00
862 238 0.34
863 67 0.10
864 6 0.01
865 16 0.02
866 145 0.21
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (853 bp):
TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAAT
GCAATAGAAAATAACCAAGAATGATAAAAGAAAAAAAGATAGAAAAATTAAAAATTCCAAAACTT
TATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAGAAAAAAAAATGAAAGCAAAC
GAAAAAAGATAAATAAAGCACAAAAAAACAAAAAAAACAAAAATACAACAAAAAATATAAAAAGT
AAGAAAAGAAAAAAAGAAAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAA
AAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAAATAAGACCTAACAATATAAAAAGTCAG
ACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAA
ATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGG
AATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAG
TAGATGAAAAGAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATCAAAAAATCACAAA
GTAGAAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTTGAACTTTATAAAAATTTTC
TAAAATATAAATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAATTAAAATAAACAAATAGA
AAAAAGTAACAAAGTAAGAAAATAAAATAAAGTAAGAAAATTTTAAAACAAAGGAAAAAGTGAAC
AAAAAAAA
Found at i:23328 original size:16 final size:17
Alignment explanation
Indices: 23297--23330 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
23287 ATAAAAAATT
*
23297 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
23314 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
23330 T
1 T
23331 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:23501 original size:24 final size:23
Alignment explanation
Indices: 23474--23532 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
23464 TCTAAAATAT
23474 AAATAAAAAATAA-ATCAAGGAAAA
1 AAATAAAAAATAACA--AAGGAAAA
* *
23498 AAATAAAAAAGTAACAAAGTAAGA
1 AAATAAAAAA-TAACAAAGGAAAA
23522 AAATAAAAAAT
1 AAATAAAAAAT
23533 TAGCGAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 1 0.03
24 26 0.84
25 3 0.10
26 1 0.03
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (23 bp):
AAATAAAAAATAACAAAGGAAAA
Found at i:23548 original size:24 final size:24
Alignment explanation
Indices: 23494--23557 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
23484 TAAATCAAGG
23494 AAAAAAATAAAAAAGTAACAAAGT
1 AAAAAAATAAAAAAGTAACAAAGT
* * * *
23518 AAGAAAATAAAAAATTAGCGAA-T
1 AAAAAAATAAAAAAGTAACAAAGT
23541 CAAAAAAATATAAAAAG
1 -AAAAAAATA-AAAAAG
23558 ACAAAATGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.03
24 26 0.81
25 5 0.16
ACGTcount: A:0.72, C:0.05, G:0.09, T:0.14
Consensus pattern (24 bp):
AAAAAAATAAAAAAGTAACAAAGT
Found at i:24283 original size:18 final size:18
Alignment explanation
Indices: 24229--24285 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
24219 TTTAAAATAT
24229 AAATAAAAATAAATGAAAA
1 AAATAAAAATAAA-GAAAA
* * *
24248 AAAT-AAATTAAGGGAAA
1 AAATAAAAATAAAGAAAA
*
24265 AAATAAAAATAAACAAAA
1 AAATAAAAATAAAGAAAA
24283 AAA
1 AAA
24286 GTAACAAAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 8 0.27
18 18 0.60
19 4 0.13
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (18 bp):
AAATAAAAATAAAGAAAA
Found at i:24657 original size:19 final size:19
Alignment explanation
Indices: 24635--24673 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24625 TTTGAGAAAA
24635 AAAAAAAGAGAAAAA-GAAG
1 AAAAAAAGA-AAAAATGAAG
*
24654 AAAAAAATAAAAAATGAAG
1 AAAAAAAGAAAAAATGAAG
24673 A
1 A
24674 GGCAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAAAAAGAAAAAATGAAG
Found at i:24941 original size:20 final size:20
Alignment explanation
Indices: 24917--24970 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
24907 TAAACAAAGA
24917 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
24936 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
24958 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
24971 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:24945 original size:26 final size:26
Alignment explanation
Indices: 24916--24991 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
24906 ATAAACAAAG
*
24916 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
24942 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
24968 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
24992 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:24963 original size:28 final size:26
Alignment explanation
Indices: 24898--24991 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
24888 ATAAAAATTT
*
24898 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
24927 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
24956 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
24984 ATAAAAAT
1 ATAAAAAT
24992 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:25215 original size:24 final size:22
Alignment explanation
Indices: 25182--25225 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
25172 TTGTGGGGAA
25182 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
25206 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
25226 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:25987 original size:1 final size:1
Alignment explanation
Indices: 25754--25972 Score: 213
Period size: 1 Copynumber: 219.0 Consensus size: 1
25744 ATAATAAAGC
* * * * * *
25754 AAAAAAAAAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAAAATAAAAAAACAAAAAAGAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*** ** * * * **** ** * * * * *
25819 AAATTTAAAAAAAAGGACAAAAAGAAAAAATAAAAATTTCAAAAATGAAAAATAGATACAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
25884 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
25949 AAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAA
25973 GTCAGAAAAA
Statistics
Matches: 180, Mismatches: 38, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 180 1.00
ACGTcount: A:0.89, C:0.03, G:0.03, T:0.06
Consensus pattern (1 bp):
A
Found at i:26858 original size:10 final size:11
Alignment explanation
Indices: 26838--26867 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
26828 AACTATAAAG
26838 AAAGAAAAAAA
1 AAAGAAAAAAA
26849 AAAGAAAAAAA
1 AAAGAAAAAAA
26860 AAATGAAA
1 AAA-GAAA
26868 GCAAACGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:27535 original size:818 final size:804
Alignment explanation
Indices: 26683--28559 Score: 2753
Period size: 818 Copynumber: 2.3 Consensus size: 804
26673 AAGGAAAACG
*
26683 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
26747 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
26812 TTATAAAAATTTATGAAACTATAAAGAAAGAAAAAAAAAAGAAAAAAAAAATGAAAGCAAACGAA
131 TTATAAAAATTTATGAAACTATAAAGAAAGAAAAAAAAAA-AAAAAAAAAATGAAAGCAAACGAA
*
26877 AAAAAGATAAATAAAGCACAAAAAAAGAGAAAAAACAA-AAAAAATATAAAAAGTAAG-AAAGTA
195 AAAAAGATAAATAAAGCACAAAAAAAGAAAAAAAACAACAAAAAATATAAAAAGTAAGAAAAG-A
*
26940 AAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAGGAAAAAAAT-
259 AAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAATG
*
27003 AGTTTAAAAAAT-AAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCATACAAAAAA
324 AGTTTAAAAAATAAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
*
27067 TTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
389 TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
*
27132 TGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAGAATAAAAATGAAAAGACAAAAT
454 TGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG--C------------AA-GAAAAGACAAAAG
* *
27197 ATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAA-CACGAAAAAATTAAAGCAAG-AAAAA
504 ATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAA
* *
27259 TGAAAGTATATG-AAAAAAAACAAGAAGAAGGGAAATTGTGAAGGGAAAAAGTTATTAAAAAATT
569 TGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATT
27323 ACAAAGCAGAAAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAA
634 ACAAAGCAG--AAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAA
27388 TTTTCTAAAATAT-AAAT-AAAAATAAATTAAGGGAAAAAATTAAAAAAACAAAA-AGAAAAAAG
697 TTTTCTAAAATATAAAATAAAAAATAAATTAAGGGAAAAAATTAAAAAAA-AAAAGA-AAAAAAG
* **
27450 TAACAAAGTAAGAAAATT-TTAAAACAAAGGAAAA-AGTGAACAAA-AAAAAA
760 -AA-AAAATAA-AAAATTAGCAAAACAAA--AAAATA-T-AA-AAAGAAAAAA
*
27500 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
27565 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
27630 TTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
131 TTATAAAAATTTATGAAACTAT----AAAGAAAG---A-AAAAAAA-AAAAA-AAAAAAATGAAA
**
27695 GC-AACAGAAAAAAAGATAAATAAAGCACAAAAAAA-ACAAAAGTACAACAAAAAATTATAAAAA
186 GCAAAC-GAAAAAAAGATAAATAAAGCACAAAAAAAGA-AAAAAAACAACAAAAAA-TATAAAAA
* *
27758 GTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAA
248 GTAAGAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAA
27823 GAAAAAAAATGAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAG
313 GAAAAAAAATGAGTTTAAAAAATA-AAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAG
* *
27888 TCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAGATAAAAAAATTATGAGAATTTAAAAAC
377 TCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAAC
*
27953 AGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTT
442 AGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATT
28018 TGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGA
507 TGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGA
28083 AAGTAGATGAAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTAC
572 AAGTAGATG-AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTAC
* * *
28148 AAAGTAGAAAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAATTGAACTTTATAAAACTTTT
636 AAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAATTTT
* * *
28213 CTAAAATATAAAAATAAAAAATAAATTAAGGGAAAAAATTAAATAAAATACGAAAAAAAGAAAAA
701 CTAAAATAT-AAAATAAAAAATAAATTAAGGGAAAAAATTAAAAAAAAAAAGAAAAAAAGAAAAA
* * *
28278 ATAAAAAATTAGCGAATCAAAAAAATATAAAAAGACAAAA
765 ATAAAAAATTAGCAAAACAAAAAAATATAAAAAGAAAAAA
*
28318 TGAAAGCACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
28383 TGCAATAGAAAATAACCAAGAATAATAAAAG-AAAAAAGATAGAAAAAT-AAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * * * *
28446 TTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAATAAAATATAAAAAT---AG-AAA--AA
131 TTATAAAAATTTATGAAACTATAAAGAAAGAAA-AAAAAAAAAAAAAAAAATGAAAGCAAACGAA
*
28505 GAAAAAGATAAATAAAGCACAAAAAAGGAAAAAAAATACAACAAAAAATATAAAA
195 -AAAAAGATAAATAAAGCACAAAAAAAG-AAAAAAA-ACAACAAAAAATATAAAA
28560 GGGCAAAATT
Statistics
Matches: 975, Mismatches: 47, Indels: 90
0.88 0.04 0.08
Matches are distributed among these distances:
801 2 0.00
802 25 0.03
803 11 0.01
804 16 0.02
807 7 0.01
808 6 0.01
809 5 0.01
812 7 0.01
816 35 0.04
817 30 0.03
818 269 0.28
819 20 0.02
820 25 0.03
821 93 0.10
822 10 0.01
823 72 0.07
824 31 0.03
825 1 0.00
826 14 0.01
827 52 0.05
828 6 0.01
829 33 0.03
830 45 0.05
831 13 0.01
833 147 0.15
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (804 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAAGAAAGAAAAAAAAAAAAAAAAAAAATGAAAGCAAACGAAA
AAAAGATAAATAAAGCACAAAAAAAGAAAAAAAACAACAAAAAATATAAAAAGTAAGAAAAGAAA
AAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAATGAG
TTTAAAAAATAAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATG
AAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATG
AAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACA
AAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAA
AAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAA
TAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAAATA
AAAAATAAATTAAGGGAAAAAATTAAAAAAAAAAAGAAAAAAAGAAAAAATAAAAAATTAGCAAA
ACAAAAAAATATAAAAAGAAAAAA
Found at i:28078 original size:16 final size:17
Alignment explanation
Indices: 28047--28080 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
28037 ATAAAAAATT
*
28047 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
28064 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
28080 T
1 T
28081 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:28925 original size:19 final size:19
Alignment explanation
Indices: 28903--28948 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
28893 AAAAGTTATT
* *
28903 AAAAAATTACAAAGTAGAA
1 AAAAAATTACAAAATAAAA
* *
28922 AAAAAATAAGAAAATAAAA
1 AAAAAATTACAAAATAAAA
28941 AAAAAATT
1 AAAAAATT
28949 GTTTAACTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (19 bp):
AAAAAATTACAAAATAAAA
Found at i:29405 original size:20 final size:19
Alignment explanation
Indices: 29378--29422 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
29368 AAAAATTTTG
29378 AGAA-AAAAAAAAGAGAAAA
1 AGAAGAAAAAAAAGA-AAAA
*
29397 AGAAGAAAAAAAATAAAAA
1 AGAAGAAAAAAAAGAAAAA
29416 ATGAAGA
1 A-GAAGA
29423 GGCAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (19 bp):
AGAAGAAAAAAAAGAAAAA
Found at i:29710 original size:27 final size:26
Alignment explanation
Indices: 29647--29738 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 26
29637 ATAAAAATTT
*
29647 ATAAAACTATAAACAAAGAAAGAAATAA
1 ATAAAAATATAAA-AAAGAAA-AAATAA
*
29675 AAAATAAATA-AGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
29703 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
29731 ATAAAAAT
1 ATAAAAAT
29739 TTCAAAAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
27 16 0.30
28 30 0.57
29 7 0.13
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:29716 original size:20 final size:20
Alignment explanation
Indices: 29669--29717 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
29659 ACAAAGAAAG
29669 AAATAAAAAATAAATAAGAA
1 AAATAAAAAATAAATAAGAA
*
29689 AAAGAAAAAATACAATAA-AA
1 AAATAAAAAATA-AATAAGAA
*
29709 ATATAAAAA
1 AAATAAAAA
29718 GGACAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (20 bp):
AAATAAAAAATAAATAAGAA
Found at i:29962 original size:23 final size:21
Alignment explanation
Indices: 29931--29972 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
29921 TTGTGCGGGA
29931 AAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAGAAAAG-AA-AAAAGAAT
*
29954 AAAATGAAAAGAAAAAAGA
1 AAAAAGAAAAGAAAAAAGA
29973 CTTTGGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (21 bp):
AAAAAGAAAAGAAAAAAGAAT
Done.