genome.fa.s311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168136.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29959

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792--844	26	2.0	26	92	0	88	24	18	28	28	1.98
1310--1727	159	2.6	156	80	5	466	25	28	26	19	1.98
2415--2440	11	2.4	11	100	0	52	7	30	30	30	1.85
2699--2751	26	2.0	26	96	0	97	24	20	28	26	1.99
3538--3590	26	2.0	26	96	0	97	26	18	26	28	1.98
5664--5716	26	2.0	26	85	7	72	28	18	24	28	1.98
5702--6017	171	1.8	171	80	2	384	23	32	25	18	1.97
6534--6586	26	2.0	26	92	0	88	26	18	28	26	1.98
7611--7663	26	2.0	26	88	0	79	28	20	26	24	1.99
7818--7869	26	2.0	26	88	7	79	28	21	21	28	1.98
8333--8706	158	2.4	158	77	8	400	24	30	27	17	1.97
8333--8750	159	2.6	157	76	7	423	25	29	27	17	1.97
8633--8873	119	2.0	119	83	4	299	24	27	30	17	1.97
8967--9459	159	3.1	156	77	7	521	22	29	28	19	1.98
9440--9490	26	2.0	26	88	0	75	31	17	23	27	1.97
11056--11557	158	3.2	158	77	5	476	22	26	27	23	1.99
11531--11581	26	2.0	26	88	7	77	29	17	25	27	1.98
18653--18705	26	2.0	26	89	7	81	28	16	24	30	1.97
19680--19732	26	2.0	26	92	0	88	24	18	28	28	1.98
20204--20256	26	2.0	26	88	0	79	20	20	30	28	1.98
21049--21101	26	2.0	26	89	7	81	28	18	24	28	1.98
21075--21576	158	3.2	155	73	8	429	23	29	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21550--21602	26	2.0	26	92	0	88	24	20	26	28	1.99
21641--21665	13	1.9	13	100	0	50	16	16	56	12	1.68
21930--21985	26	2.2	26	87	6	78	32	17	19	30	1.95
22430--22482	26	2.0	26	88	0	79	26	18	26	28	1.98
23833--23885	26	2.0	26	92	0	88	28	18	24	28	1.98
24042--24093	26	2.0	25	88	3	77	32	17	21	28	1.96
24544--24596	26	2.0	26	88	0	79	26	18	26	28	1.98
25609--25661	26	2.0	26	96	0	97	24	20	28	26	1.99
26830--26882	26	2.0	26	88	0	79	26	16	28	28	1.97
28442--28494	26	2.0	26	89	7	81	30	20	22	26	1.98
28968--29021	28	1.9	28	92	0	90	24	18	27	29	1.98

Tables:   1

The End!