Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 382840
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Warning! 2000 characters in sequence are not A, C, G, or T
File 2 of 8
Found at i:48368 original size:24 final size:22
Alignment explanation
Indices: 48333--48377 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
48323 TAAAATAAAC
48333 ATTAAATAAATATAT-AATTAAT
1 ATTAAATAAATA-ATCAATTAAT
48355 ATTAAATTAGAATAATCAATTAA
1 ATTAAA-TA-AATAATCAATTAA
48378 GTTATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAAATAAATAATCAATTAAT
Found at i:48667 original size:33 final size:32
Alignment explanation
Indices: 48628--48701 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
48618 TTATAGTATA
48628 TAATAATATACT-TAATTATAATTAAATAACTAT
1 TAATAATAT-CTATAATTATAATTAAA-AACTAT
* * *
48661 TAATAATATTTATAATTATATTTATAAACTAT
1 TAATAATATCTATAATTATAATTAAAAACTAT
*
48693 TAATTATAT
1 TAATAATAT
48702 TATCAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 15 0.42
33 21 0.58
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (32 bp):
TAATAATATCTATAATTATAATTAAAAACTAT
Found at i:48696 original size:32 final size:33
Alignment explanation
Indices: 48640--48702 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
48630 ATAATATACT
48640 TAATTATAATTAAATAACTATTAATAATATTTA
1 TAATTATAATTAAATAACTATTAATAATATTTA
* * *
48673 TAATTATATTTATA-AACTATTAATTATATT
1 TAATTATAATTAAATAACTATTAATAATATT
48703 ATCAATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (33 bp):
TAATTATAATTAAATAACTATTAATAATATTTA
Found at i:48743 original size:15 final size:15
Alignment explanation
Indices: 48723--48774 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
48713 ATTTAACAAT
48723 TTAATATATTTAATA
1 TTAATATATTTAATA
*
48738 TTAATATAATTAATA
1 TTAATATATTTAATA
48753 TT-ATAT-TTTAATA
1 TTAATATATTTAATA
48766 -TAATA-ATTT
1 TTAATATATTT
48775 TAAATAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 1 0.03
13 12 0.36
14 4 0.12
15 16 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:48774 original size:14 final size:14
Alignment explanation
Indices: 48747--48787 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
48737 ATTAATATAA
*
48747 TTAATATTAT-ATT
1 TTAATATAATAATT
48760 TTAATATAATAATT
1 TTAATATAATAATT
48774 TTAA-ATAATCAATT
1 TTAATATAAT-AATT
48788 AAATATCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAATATAATAATT
Found at i:48872 original size:17 final size:17
Alignment explanation
Indices: 48819--48900 Score: 58
Period size: 17 Copynumber: 4.5 Consensus size: 17
48809 TAATAACCTT
*
48819 TTAATTATAATTAATTTA
1 TTAAATATAATTAA-TTA
*
48837 CTTAAAATATTATTTAATTA
1 -TT-AAATA-TAATTAATTA
48857 TTAAATATAATTAATTCAA
1 TTAAATATAATTAATT--A
* *
48876 TTAAAT-TAAATATTCTA
1 TTAAATATAATTAAT-TA
48893 TTAAATAT
1 TTAAATAT
48901 TTAATAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
17 15 0.29
18 12 0.23
19 12 0.23
20 7 0.13
21 6 0.12
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAATATAATTAATTA
Found at i:49262 original size:22 final size:22
Alignment explanation
Indices: 49237--49287 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
49227 TTACTATCAG
*
49237 TTAAATATTTTA-ATTAATTTAA
1 TTAAATATTTAATATTAATTT-A
49259 TTAAATA-TTAATATTAATTTA
1 TTAAATATTTAATATTAATTTA
49280 TT-AATATT
1 TTAAATATT
49288 ACAATAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 4 0.15
21 7 0.27
22 15 0.58
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TTAAATATTTAATATTAATTTA
Found at i:49336 original size:21 final size:22
Alignment explanation
Indices: 49310--49390 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 22
49300 AATCATAATT
49310 ATAATTAATTATTT-TATATAA
1 ATAATTAATTATTTATATATAA
*
49331 ATAATTAA-TATTTGCTAATATAA
1 ATAATTAATTATTT-AT-ATATAA
*
49354 ATAGTATTTATATTATTTAAATATAA
1 ATA--A-TTA-ATTATTTATATATAA
49380 ATAA-TAATTAT
1 ATAATTAATTAT
49391 ATATTATCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
20 5 0.10
21 13 0.26
22 3 0.06
23 9 0.18
24 1 0.02
25 1 0.02
26 12 0.24
27 1 0.02
28 5 0.10
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAATTAATTATTTATATATAA
Found at i:49586 original size:13 final size:13
Alignment explanation
Indices: 49568--49661 Score: 65
Period size: 13 Copynumber: 7.4 Consensus size: 13
49558 AAATAGTATT
49568 TTAAATTAATTAA
1 TTAAATTAATTAA
*
49581 TTAAATTAATTAT
1 TTAAATTAATTAA
*
49594 TTAATTTATATT-A
1 TTAAATTA-ATTAA
* *
49607 TTATATATAA--GA
1 TTAAAT-TAATTAA
49619 TTAAATTAATT-A
1 TTAAATTAATTAA
49631 TTATAATTAA-TAA
1 TTA-AATTAATTAA
*
49644 TT-AATTATATTAT
1 TTAAATTA-ATTAA
49657 TTAAA
1 TTAAA
49662 ATATAATAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
11 8 0.12
12 12 0.19
13 37 0.58
14 7 0.11
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (13 bp):
TTAAATTAATTAA
Found at i:49597 original size:17 final size:17
Alignment explanation
Indices: 49571--49661 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 17
49561 TAGTATTTTA
*
49571 AATTAATTAATTAAATT
1 AATTATTTAATTAAATT
*
49588 AATTATTTAATTTATATT
1 AATTATTTAA-TTAAATT
49606 -ATTATATATAAGATTAAATT
1 AATTAT-T-T-A-ATTAAATT
49626 AATTATTATAATTAATAATT
1 AATTATT-TAATT-A-AATT
*
49646 AATTATATTATTTAAA
1 AATTAT-TTAATTAAA
49662 ATATAATAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
17 14 0.23
18 12 0.20
19 4 0.07
20 24 0.39
21 7 0.11
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (17 bp):
AATTATTTAATTAAATT
Found at i:49666 original size:51 final size:51
Alignment explanation
Indices: 49568--49667 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 51
49558 AAATAGTATT
* *
49568 TTAAATTAATTAATTAAATTAATTATTTAATTTATATTATTATATATAAGA
1 TTAAATTAATTAATTAAATTAATTAATTAATTTATATTATTAAATATAAGA
49619 TTAAATTAATT-ATTATAATTAA-TAATTAA-TTATATTATTTAAAATATAA
1 TTAAATTAATTAATTA-AATTAATTAATTAATTTATATTA-TT-AAATATAA
49668 TAATCAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
49 8 0.18
50 12 0.27
51 24 0.55
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (51 bp):
TTAAATTAATTAATTAAATTAATTAATTAATTTATATTATTAAATATAAGA
Found at i:50169 original size:28 final size:27
Alignment explanation
Indices: 50106--50173 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
50096 GTAAATAATG
*
50106 TATTTAT-TATAATAATTTAATAATAT
1 TATTTATATATTATAATTTAATAATAT
* * *
50132 TGTATAATATATTATAATTATAATTATAT
1 TAT-TTATATATTATAATT-TAATAATAT
50161 TATTTATATATTA
1 TATTTATATATTA
50174 ATAAATATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
26 2 0.06
27 3 0.09
28 18 0.55
29 10 0.30
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
TATTTATATATTATAATTTAATAATAT
Found at i:50658 original size:17 final size:17
Alignment explanation
Indices: 50633--50705 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 17
50623 TATAAATTAG
50633 TATAA-ATTATAATAAT
1 TATAATATTATAATAAT
50649 TATAATATTAT--T-AT
1 TATAATATTATAATAAT
* * *
50663 TATACTAATAAAATAA-
1 TATAATATTATAATAAT
50679 TA-AATATTATTAATAAT
1 TATAATATTA-TAATAAT
*
50696 CA-AATATTAT
1 TATAATATTAT
50706 GTATTCGGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
14 10 0.23
15 6 0.14
16 14 0.32
17 14 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TATAATATTATAATAAT
Found at i:50701 original size:29 final size:31
Alignment explanation
Indices: 50643--50701 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
50633 TATAAATTAT
* *
50643 AATAATTATAATATTATTATTATACTAATAA
1 AATAATTATAATATTATTATAATACAAATAA
50674 AATAA-TA-AATATTATTAATAAT-CAAATA
1 AATAATTATAATATTATT-ATAATACAAATA
50702 TTATGTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 14 0.56
30 6 0.24
31 5 0.20
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (31 bp):
AATAATTATAATATTATTATAATACAAATAA
Found at i:51810 original size:19 final size:20
Alignment explanation
Indices: 51779--51888 Score: 83
Period size: 19 Copynumber: 5.6 Consensus size: 20
51769 AACAATATTT
51779 ATATT-TAATTTAATATT-TA
1 ATATTATAA-TTAATATTATA
51798 ATATTATAATTAATATTATA
1 ATATTATAATTAATATTATA
*
51818 A-ATTAT--TTAAT-TTGTA
1 ATATTATAATTAATATTATA
51834 ATA-TATTAATTACTAATATTATA
1 ATATTA-TAA-T--TAATATTATA
* *
51857 ATA-AAAAATTAATATTATA
1 ATATTATAATTAATATTATA
51876 ATAATTATAATTA
1 AT-ATTATAATTA
51889 TAGATATAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
16 7 0.10
17 7 0.10
19 30 0.41
20 8 0.11
21 7 0.10
22 6 0.08
23 8 0.11
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (20 bp):
ATATTATAATTAATATTATA
Found at i:51818 original size:12 final size:12
Alignment explanation
Indices: 51772--51818 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
51762 TAAATATAAC
*
51772 AATATTTATATTT
1 AATA-TTATAATT
*
51785 AAT-TTAATATTT
1 AATATT-ATAATT
51797 AATATTATAATT
1 AATATTATAATT
51809 AATATTATAA
1 AATATTATAA
51819 ATTATTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
11 2 0.06
12 24 0.77
13 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
AATATTATAATT
Found at i:51909 original size:58 final size:59
Alignment explanation
Indices: 51787--51921 Score: 134
Period size: 58 Copynumber: 2.3 Consensus size: 59
51777 TTATATTTAA
* * * * *
51787 TTTAATATT-TAATATTATAATTAATATTATAAATTATTTAATTTGTAATATATTAATT
1 TTTAATATTATAATATAAAAATTAATATTATAAATAATTTAATTTATAATATAATAATT
** *
51845 ACTAATATTATAATA-AAAAATTAATATTAT-AATAATTATAA-TTATAGATATAATAGTT
1 TTTAATATTATAATATAAAAATTAATATTATAAATAATT-TAATTTATA-ATATAATAATT
*
51903 TTTAATAATTATATTATAA
1 TTTAAT-ATTATAATATAA
51922 TCTATTTAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
57 10 0.16
58 36 0.59
59 13 0.21
60 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (59 bp):
TTTAATATTATAATATAAAAATTAATATTATAAATAATTTAATTTATAATATAATAATT
Found at i:52037 original size:20 final size:20
Alignment explanation
Indices: 52014--52068 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
52004 AATTTATAAG
*
52014 ATATATTAATTATTTTATAT
1 ATATATTAATTATTATATAT
*
52034 ATATAATAATTATTATATAT
1 ATATATTAATTATTATATAT
*
52054 -TAATATTATTTATTA
1 AT-ATATTAATTATTA
52069 AATAATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATATTAATTATTATATAT
Found at i:52062 original size:13 final size:14
Alignment explanation
Indices: 52028--52069 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
52018 ATTAATTATT
*
52028 TTATATATATAATAA
1 TTAT-TATATATTAA
52043 TTATTATATATTAA
1 TTATTATATATTAA
*
52057 -TATTATTTATTAA
1 TTATTATATATTAA
52070 ATAATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.48
14 9 0.36
15 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATTATATATTAA
Found at i:52155 original size:27 final size:26
Alignment explanation
Indices: 52049--52199 Score: 97
Period size: 27 Copynumber: 5.9 Consensus size: 26
52039 ATAATTATTA
52049 TATATTAATATTATTTATTAAATAAT-T
1 TATATTAA-ATTA-TTATTAAATAATAT
* *
52076 TA-ATTTAATTAATAATATTATATAATAT
1 TATATTAAATT-AT--TATTAAATAATAT
* *
52104 AATA-T-AATT-TTATT-AATTATAT
1 TATATTAAATTATTATTAAATAATAT
52126 TATACTTAAATTATTATTAAATAATAT
1 TATA-TTAAATTATTATTAAATAATAT
*
52153 TATTATTTAAATTAAT-TTAAATAA-A-
1 TA-TA-TTAAATTATTATTAAATAATAT
* *
52178 GAT-TAAAATTATTATTAAATAA
1 TATATTAAATTATTATTAAATAA
52200 GTTATTTATT
Statistics
Matches: 100, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
22 17 0.17
23 12 0.12
24 2 0.02
25 10 0.10
26 11 0.11
27 33 0.33
28 14 0.14
29 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (26 bp):
TATATTAAATTATTATTAAATAATAT
Found at i:52189 original size:93 final size:97
Alignment explanation
Indices: 52017--52189 Score: 207
Period size: 93 Copynumber: 1.8 Consensus size: 97
52007 TTATAAGATA
* *
52017 TATTAATTATTTTATATATATAATAATTATTATATATTAATATTATTTATTAAATAATTTAATTT
1 TATTAATTATATTATATATATAATAATTATTATATATTAATATTATTTATTAAATAATTTAATAT
** *
52082 AATTAATAATATTATATAATATAATATAATTT
66 AAAGAATAAAATTATATAATATAATATAATTT
*
52114 TATTAATTATATTATACT-TA-AATTATTATTA-A-A-TAATATTA-TTATTTAAATTAATTTAA
1 TATTAATTATATTATA-TATATAATAATTATTATATATTAATATTATTTA-TTAAA-TAATTTAA
*
52173 -ATAAAGATTAAAATTAT
63 TATAAAGAATAAAATTAT
52190 TATTAAATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
92 3 0.05
93 25 0.38
94 9 0.14
95 1 0.02
96 10 0.15
97 17 0.26
98 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (97 bp):
TATTAATTATATTATATATATAATAATTATTATATATTAATATTATTTATTAAATAATTTAATAT
AAAGAATAAAATTATATAATATAATATAATTT
Found at i:52881 original size:19 final size:18
Alignment explanation
Indices: 52859--52902 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
52849 ATTATACCAT
52859 TAATTATTATATT-TAATTA
1 TAATTATTAT-TTATAA-TA
52878 TAATTAATTATTTATAATA
1 TAATT-ATTATTTATAATA
52897 TAATTA
1 TAATTA
52903 AGCTATTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 14 0.61
20 8 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATTATTATTTATAATA
Found at i:52900 original size:25 final size:24
Alignment explanation
Indices: 52847--52902 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
52837 TAACATTTAT
*
52847 TAATTATACCATTAATTATTATATT
1 TAATTATA-CATTAATTATTATATA
52872 TAATTATA-ATTAATTATTTATAATA
1 TAATTATACATTAATTA-TTAT-ATA
52897 TAATTA
1 TAATTA
52903 AGCTATTAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 8 0.29
24 4 0.14
25 16 0.57
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TAATTATACATTAATTATTATATA
Found at i:52903 original size:19 final size:22
Alignment explanation
Indices: 52844--52903 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 22
52834 TTTTAACATT
52844 TATTAATTATACCATTAATTATTA
1 TATTAATTATA--ATTAATTATTA
52868 TATTTAATTATAATTAATTATT-
1 TA-TTAATTATAATTAATTATTA
52890 TA-TAA-TATAATTAA
1 TATTAATTATAATTAA
52904 GCTATTAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 9 0.26
20 3 0.09
22 2 0.06
23 10 0.29
24 2 0.06
25 9 0.26
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAATTATAATTAATTATTA
Found at i:52929 original size:12 final size:12
Alignment explanation
Indices: 52912--52948 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
52902 AAGCTATTAG
52912 ATAAATATTAAT
1 ATAAATATTAAT
52924 ATAAATATTAAT
1 ATAAATATTAAT
*
52936 -TATATATTAAT
1 ATAAATATTAAT
52947 AT
1 AT
52949 TAAACAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
ATAAATATTAAT
Found at i:52947 original size:17 final size:16
Alignment explanation
Indices: 52918--52951 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
52908 TTAGATAAAT
52918 ATTAATATAAATATTA
1 ATTAATATAAATATTA
*
52934 ATTATATATTAATATTA
1 ATTA-ATATAAATATTA
52951 A
1 A
52952 ACAAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAATATAAATATTA
Found at i:52968 original size:25 final size:25
Alignment explanation
Indices: 52913--52977 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
52903 AGCTATTAGA
*
52913 TAAATATTAATA-T-AAATATTAAT
1 TAAATATTAATATTAAAAAATTAAT
*
52936 TATATATTAATATTAAACAAATT-AT
1 TAAATATTAATATTAAA-AAATTAAT
52961 TAAATATTAATAGTTAA
1 TAAATATTAATA-TTAA
52978 TACGCATGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 11 0.31
24 1 0.03
25 15 0.43
26 8 0.23
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
TAAATATTAATATTAAAAAATTAAT
Found at i:53509 original size:8 final size:8
Alignment explanation
Indices: 53496--53605 Score: 72
Period size: 8 Copynumber: 14.1 Consensus size: 8
53486 TTAAATTATA
53496 TAATAATT
1 TAATAATT
53504 TAATAATT
1 TAATAATT
*
53512 T-AT-ATA
1 TAATAATT
53518 TAATAATT
1 TAATAATT
53526 TAATAATT
1 TAATAATT
*
53534 T-AT-ACT
1 TAATAATT
*
53540 TAAT-ATA
1 TAATAATT
53547 TAATTATATT
1 TAA-TA-ATT
53557 TAATAATT
1 TAATAATT
*
53565 AAAT-ATT
1 TAATAATT
*
53572 T-ATTATT
1 TAATAATT
*
53579 ATAATAAATA
1 -TAAT-AATT
*
53589 AAATAATT
1 TAATAATT
53597 TAATAATT
1 TAATAATT
53605 T
1 T
53606 TTTATATAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
6 8 0.10
7 18 0.23
8 39 0.49
9 7 0.09
10 7 0.09
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (8 bp):
TAATAATT
Found at i:53520 original size:22 final size:22
Alignment explanation
Indices: 53492--53585 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
53482 ATAGTTAAAT
53492 TATATAATAATTTAATAATTTA
1 TATATAATAATTTAATAATTTA
53514 TATATAATAATTTAATAATTTA
1 TATATAATAATTTAATAATTTA
53536 TACT-TAAT-A--T-ATAA-TTA
1 TA-TATAATAATTTAATAATTTA
* *
53553 TATTTAATAATTAAAT-ATTTA
1 TATATAATAATTTAATAATTTA
53574 TTATTATAATAA
1 -TA-TATAATAA
53586 ATAAAATAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 17
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.02
17 9 0.15
18 5 0.08
19 1 0.02
20 1 0.02
21 6 0.10
22 30 0.49
23 8 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (22 bp):
TATATAATAATTTAATAATTTA
Found at i:53584 original size:15 final size:15
Alignment explanation
Indices: 53471--53573 Score: 54
Period size: 17 Copynumber: 6.7 Consensus size: 15
53461 TTGTAAAACA
*
53471 TAAATATTTATATAGT
1 TAAATATTTA-ATAAT
*
53487 TAAATTATATAATAAT
1 TAAA-TATTTAATAAT
*
53503 TTAATAATTT-AT-A-
1 TAAAT-ATTTAATAAT
53516 TATAATAATTTAATAAT
1 TA-AAT-ATTTAATAAT
* *
53533 T-TATACTTAAT-AT
1 TAAATATTTAATAAT
53546 ATAATTATATTTAATAAT
1 -TAA--ATATTTAATAAT
53564 TAAATATTTA
1 TAAATATTTA
53574 TTATTATAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 23
0.68 0.09 0.23
Matches are distributed among these distances:
13 3 0.04
14 16 0.24
15 14 0.21
16 15 0.22
17 17 0.25
18 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (15 bp):
TAAATATTTAATAAT
Found at i:53584 original size:40 final size:39
Alignment explanation
Indices: 53505--53604 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 39
53495 ATAATAATTT
* *
53505 AATAATTTATATATAATAATTTAATAATTTATACTTAATA
1 AATAA-TTATATTTAATAATTAAATAATTTATACTTAATA
* *
53545 TATAATTATATTTAATAATTAAAT-ATTTATTATTATAATA
1 AATAATTATATTTAATAATTAAATAATTTA-TACT-TAATA
*
53585 AATAA-AATAATTTAATAATT
1 AATAATTAT-ATTTAATAATT
53605 TTTTATATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
38 5 0.10
39 22 0.43
40 24 0.47
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (39 bp):
AATAATTATATTTAATAATTAAATAATTTATACTTAATA
Found at i:54170 original size:7 final size:7
Alignment explanation
Indices: 54148--54191 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
54138 TGCTAACAAT
54148 TTATATA
1 TTATATA
*
54155 TCATATA
1 TTATATA
54162 TTATATA
1 TTATATA
54169 TTATA-A
1 TTATATA
54175 TTA-ATA
1 TTATATA
54181 TT-TAT-
1 TTATATA
54186 TTATAT
1 TTATAT
54192 TAATAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 12 0.38
7 17 0.53
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (7 bp):
TTATATA
Found at i:54181 original size:19 final size:19
Alignment explanation
Indices: 54159--54316 Score: 66
Period size: 19 Copynumber: 8.3 Consensus size: 19
54149 TATATATCAT
54159 ATATTATATATTATAATTA
1 ATATTATATATTATAATTA
54178 ATATT-TAT-TTAT-ATTA
1 ATATTATATATTATAATTA
* * *
54194 ATAATAAATATTA-ATGTTA
1 ATATTATATATTATA-ATTA
54213 ATATTA-AT-TT-TAATTA
1 ATATTATATATTATAATTA
*
54229 ATTTATTATTAATATCCTATAATTT
1 A--TATTA-T-ATAT--TATAATTA
* *
54254 AT-TTAAATATATATTATTA
1 ATATTATATAT-TATAATTA
**
54273 ATAAAATA-ATT-TAATATA
1 ATATTATATATTATAAT-TA
*
54291 AAATTATATATTACTAATTA
1 ATATTATATATTA-TAATTA
54311 TATATT
1 -ATATT
54317 TAAATAATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 38
0.64 0.11 0.24
Matches are distributed among these distances:
16 12 0.12
17 12 0.12
18 21 0.21
19 26 0.26
20 8 0.08
21 10 0.10
22 4 0.04
23 1 0.01
24 1 0.01
25 6 0.06
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (19 bp):
ATATTATATATTATAATTA
Found at i:54219 original size:6 final size:6
Alignment explanation
Indices: 54159--54243 Score: 56
Period size: 6 Copynumber: 14.7 Consensus size: 6
54149 TATATATCAT
* *
54159 ATATTA TATATT- ATAATTA ATATT- -TATTT ATATTA ATAATAA ATATTA
1 ATATTA -ATATTA AT-ATTA ATATTA ATATTA ATATTA AT-ATTA ATATTA
* * *
54207 ATGTTA ATATTA AT-TTT A-ATTA AT-TTA TTATTA ATAT
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATAT
54244 CCTATAATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
4 4 0.07
5 12 0.20
6 33 0.54
7 12 0.20
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (6 bp):
ATATTA
Found at i:55538 original size:180 final size:178
Alignment explanation
Indices: 55280--55856 Score: 552
Period size: 180 Copynumber: 3.2 Consensus size: 178
55270 ATTTTAAATC
* * ** * * *
55280 ACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCGAATAAACTTCTATGAACA
1 ACTTATTAATTTTTGAAATATTAATAGATTAATATTATTTTATTTTGAATAAGCTTGTATGAATA
* *
55345 AAAACATTTGTTTTATGATAAAACAAAAAGTAATAATGATTTGAAATATATAATAGTTCAAATAG
66 GAAA-A-TTGTTTTATGATAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTCAAATAG
* *
55410 T-ATAATTTTTTAAATTGGTTAGGTAAACATAATTATTTTTTAAATCTCTT
129 TCATAATTATTTAAATTGGTTCGGTAAACA-AATTATTTTTTAAATCTCTT
* * * * *
55460 ATTTATTAATTTTTGAAATATTAACAAATTAATTTTATTTTATTTTGAATAAGCTAGTATGAAGT
1 ACTTATTAATTTTTGAAATATTAATAGATTAATATTATTTTATTTTGAATAAGCTTGTATGAA-T
* * * * ** * * *
55525 GAGAAAATTGTTTTAT--TACAAGACAAAGTTCATAACAATTTGAATTAGATAATTGTTCATATA
65 -AGAAAATTGTTTTATGATAAAACAAAAAG-TAATAATGATTTGAAATATATAATTGTTCAAATA
* * * * * * ** *
55588 GTCTTAACTATTTGAGTTGATTCGGCAAACAAATTTATTTTTTAGGTCCCTT
128 GTCATAATTATTTAAATTGGTTCGGTAAACAAA-TTATTTTTTAAATCTCTT
* * * * *
55640 AGTTATTAATTTTTTG-AATATTATTAGATTCATATTGTTTTATTTTGAATAAGCTTGCATGAAT
1 ACTTATTAA-TTTTTGAAATATTAATAGATTAATATTATTTTATTTTGAATAAGCTTGTATGAAT
* * * * * *
55704 AGAAATAATTGTTTTATGACAAAACAAAAGGTTATAATGATATGAAGTATAGAATTGTTCAAATA
65 AG-AA-AATTGTTTTATGATAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTCAAATA
* * *
55769 GTCATAATTATTTAAACTGGTTCGGTAAACAGATTCATTTTTTAAA-GTCTT
128 GTCATAATTATTTAAATTGGTTCGGTAAACAAATT-ATTTTTTAAATCTCTT
* * *
55820 ACTTATTAATTTTTGAAATTGTTAATTGTTTAATATT
1 ACTTATTAATTTTTGAAA-TATTAATAGATTAATATT
55857 TATATAACTA
Statistics
Matches: 310, Mismatches: 74, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
178 11 0.04
179 40 0.13
180 169 0.55
181 79 0.25
182 11 0.04
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (178 bp):
ACTTATTAATTTTTGAAATATTAATAGATTAATATTATTTTATTTTGAATAAGCTTGTATGAATA
GAAAATTGTTTTATGATAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTCAAATAGTC
ATAATTATTTAAATTGGTTCGGTAAACAAATTATTTTTTAAATCTCTT
Found at i:55981 original size:21 final size:22
Alignment explanation
Indices: 55957--55997 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
55947 TATATCTTAA
*
55957 TTTATATATTATAA-ATATATG
1 TTTAAATATTATAATATATATG
55978 TTTAAATATTATAATATATA
1 TTTAAATATTATAATATATA
55998 ATATTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTAAATATTATAATATATATG
Found at i:56069 original size:25 final size:26
Alignment explanation
Indices: 56023--56080 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
56013 AATAATATTA
* *
56023 ATAATTTCAATTAATAGTATATAACT
1 ATAATTTAAATTAATAATATATAACT
*
56049 -TAATTTAAATT-ATAATAATATAATT
1 ATAATTTAAATTAATAAT-ATATAACT
56074 ATAATTT
1 ATAATTT
56081 TATATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 4 0.15
25 17 0.63
26 6 0.22
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (26 bp):
ATAATTTAAATTAATAATATATAACT
Found at i:56376 original size:20 final size:19
Alignment explanation
Indices: 56353--56393 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
56343 CATAATATAT
56353 AATTATTATTAAATTATGTA
1 AATTATTATTAAATTAT-TA
*
56373 AATTATTATTAATTTATTA
1 AATTATTATTAAATTATTA
56392 AA
1 AA
56394 AAATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
AATTATTATTAAATTATTA
Found at i:56528 original size:12 final size:13
Alignment explanation
Indices: 56492--56545 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
56482 ATTATTTAAT
56492 TAAGAATATAATAAA
1 TAAG-ATATAAT-AA
*
56507 TAATGTTATAATAA
1 TAA-GATATAATAA
56521 T-AGATATAATAA
1 TAAGATATAATAA
*
56533 TAAGCTATAATAA
1 TAAGATATAATAA
56546 AATAATAAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.29
13 11 0.32
14 3 0.09
15 9 0.26
16 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (13 bp):
TAAGATATAATAA
Found at i:60811 original size:16 final size:17
Alignment explanation
Indices: 60779--60811 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60769 AACATGTTCA
60779 AATAATTATAACTATTTG
1 AATAATTAT-ACTATTTG
60797 AATAATTAT-CTATTT
1 AATAATTATACTATTT
60812 TAAATAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:61168 original size:15 final size:15
Alignment explanation
Indices: 61148--61177 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61138 TAATTGATAC
61148 TATTAGTTAACATAG
1 TATTAGTTAACATAG
*
61163 TATTAGTTAATATAG
1 TATTAGTTAACATAG
61178 ATATAATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.43
Consensus pattern (15 bp):
TATTAGTTAACATAG
Found at i:61373 original size:17 final size:16
Alignment explanation
Indices: 61336--61388 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
61326 TTTATTATTC
*
61336 ATAATTATTTAATGA-A
1 ATAATTATTAAAT-ATA
*
61352 ATAATTGTTAAATTATA
1 ATAATTATTAAA-TATA
*
61369 ATAATTATTATATATA
1 ATAATTATTAAATATA
61385 ATAA
1 ATAA
61389 AATAAATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 19 0.61
17 12 0.39
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (16 bp):
ATAATTATTAAATATA
Found at i:61413 original size:23 final size:24
Alignment explanation
Indices: 61387--61432 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
61377 TATATATAAT
61387 AAAA-TAAATTGATTAAT-ATTTTC
1 AAAATTAAATT-ATTAATAATTTTC
*
61410 AAAATTATATTATTAATAATTTT
1 AAAATTAAATTATTAATAATTTT
61433 ACTTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
AAAATTAAATTATTAATAATTTTC
Found at i:62178 original size:19 final size:20
Alignment explanation
Indices: 62150--62193 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
62140 TAACTAAGAT
*
62150 TAAATAATAATTTATTTAATA
1 TAAATAATAA-TAATTTAATA
62171 -AAAT-ATAATAATTTAATA
1 TAAATAATAATAATTTAATA
62189 TAAAT
1 TAAAT
62194 TAGTTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 8 0.38
20 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAATAATAATAATTTAATA
Found at i:62202 original size:18 final size:18
Alignment explanation
Indices: 62151--62202 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
62141 AACTAAGATT
62151 AAATAATAATTTATTTAATA
1 AAAT-ATAA-TTATTTAATA
*
62171 AAATATAATAATTTAATA
1 AAATATAATTATTTAATA
*
62189 TAAAT-TAGTTATTT
1 -AAATATAATTATTT
62203 GTATAATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 16 0.57
19 8 0.29
20 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AAATATAATTATTTAATA
Found at i:62877 original size:180 final size:178
Alignment explanation
Indices: 62468--62877 Score: 402
Period size: 180 Copynumber: 2.3 Consensus size: 178
62458 GTAAGTAGAA
* * *
62468 TTATTTTCTAAATCTCTTATAAATTTTTAAAATATTAATAAATTA-ATT-TTATTCTATTTCGAA
1 TTATTTTTTAAATCTCTTATTAATTCTTAAAATATTAAT-AATTATATTATTATTCTATTTCGAA
* * ** * *
62531 CAAGCTTCTATGAGCTTAAATAATTATTTTATGACAAAACAAAAGGTTATAACAAGTTGAAATAA
65 CAAGCTTCTATAAACAGAAACAATTATTTTATAACAAAACAAAAGGTTATAACAAGTTGAAATAA
* * * * * ** * *
62596 ATAATTTTTCATATAGTCTTAACTATTTGAACTGGTTTGACAAACGGGT
130 ATAATTGTTCAAATAATCATAACTATTTGAACTGGATCAACAAACAGAT
* * *
62645 TTATTTTTTAAATCTCATAGTT-ATTCATTTTCAAAA-ATTACTAAAT-TATTATTACTT-TATT
1 TTATTTTTTAAATCTCTTA-TTAATTC---TT-AAAATATTAATAATTATATTATTA-TTCTATT
* * * * * *
62706 TCGAATAAGCTTGTATAAACAGAAACAATTATTTTATAATAGAGC-AAAGGTTATAACAATTTGA
60 TCGAACAAGCTTCTATAAACAGAAACAATTATTTTATAACAAAACAAAAGGTTATAACAAGTTGA
* *
62770 AATAGATAATTGTTCAAATAATCATAACTATTTGAACTGGATCAACAAATAGAT
125 AATAAATAATTGTTCAAATAATCATAACTATTTGAACTGGATCAACAAACAGAT
* *
62824 TTCTTTTTTTAAATCTCTTATTAATTCTTGAAATATTAATAAGTTAGTATTATT
1 TT-ATTTTTTAAATCTCTTATTAATTCTTAAAATATTAATAA-TTA-TATTATT
62878 TTATTTAGAA
Statistics
Matches: 185, Mismatches: 34, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
176 3 0.02
177 29 0.16
178 2 0.01
179 71 0.38
180 74 0.40
181 6 0.03
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (178 bp):
TTATTTTTTAAATCTCTTATTAATTCTTAAAATATTAATAATTATATTATTATTCTATTTCGAAC
AAGCTTCTATAAACAGAAACAATTATTTTATAACAAAACAAAAGGTTATAACAAGTTGAAATAAA
TAATTGTTCAAATAATCATAACTATTTGAACTGGATCAACAAACAGAT
Found at i:62952 original size:177 final size:177
Alignment explanation
Indices: 62557--63159 Score: 443
Period size: 177 Copynumber: 3.4 Consensus size: 177
62547 TAAATAATTA
* ** * * * * * *
62557 TTTTATGACAAAACAAAAGGTTATAACAAGTTGAAATAAATAATTTTTCATATAGTCTTAACTAT
1 TTTTATGACAAAAC-AAAGGTAATAATGATTTAAAATAGATAATTGTTCAAATAGTCATAACTAT
** * * * * *
62622 TTGAACTGG-TTTGACAAACGGGTTTATTTTTTAAATCTCATAG-TTATTCATT-TTCAAAAATT
65 TTGAA-TGGATTCAACAAACTGATTTATTTTTTAAATCT--T-GCTTATTAATTCTTGAAATATT
* * * * * * * * * *
62684 ACTAAATTATTATTACTTTATTTCGAATAAGCTTGTATAAACAGAAACAATTA
126 AATAAAGTAGTATTATTTTATTTAGAAAAAGTTTTTATAAACA-AAACAACTG
* * * * * ** * *
62737 TTTTATAATAGAGCAAAGGTTATAACAATTTGAAATAGATAATTGTTCAAATAATCATAACTATT
1 TTTTATGACAAAACAAAGGTAATAATGATTTAAAATAGATAATTGTTCAAATAGTCATAACTATT
*
62802 TGAACTGGA-TCAACAAA-TAGATTTCTTTTTTTAAATC-T-CTTATTAATTCTTGAAATATTAA
66 TGAA-TGGATTCAACAAACT-GATTT-ATTTTTTAAATCTTGCTTATTAATTCTTGAAATATTAA
* * ** *
62863 T-AAGTTAGTATTATTTTATTTAGAAAAATTTTATTTGTTGA-AAAACAATTG
128 TAAAG-TAGTATTATTTTATTTAGAAAAA-GTT-TTTATAAACAAAACAACTG
* * * * * *
62914 TTTTATGACAAAACAAAGGTAATAATGATTTAAAATAGATAGTTGTTTAAATGGCCATGATTATT
1 TTTTATGACAAAACAAAGGTAATAATGATTTAAAATAGATAATTGTTCAAATAGTCATAACTATT
* ** * *
62979 TGAATTGATTCAGTAAACTGATTTATTTTTTAAATCTTTTGTTTATTAATTTTTGAAATATTAAT
66 TGAATGGATTCAACAAACTGATTTATTTTTTAAATC--TTGCTTATTAATTCTTGAAATATTAAT
* * * * *
63044 AAAGTAGTATTATTTTATTTTGGATAAGTTTTTATAAACTAAAATAGCTG
129 AAAGTAGTATTATTTTATTTAGAAAAAGTTTTTATAAAC-AAAACAACTG
* * *
63094 TTTTATGACAAAACAACTA-GTCATAATGATTTTAAATAGATAATTGTTGAAATAGTCATAACTA
1 TTTTATGACAAAACAA--AGGTAATAATGATTTAAAATAGATAATTGTTCAAATAGTCATAACTA
63158 TT
64 TT
63160 ATAGATATAA
Statistics
Matches: 334, Mismatches: 70, Indels: 37
0.76 0.16 0.08
Matches are distributed among these distances:
176 24 0.07
177 103 0.31
178 8 0.02
179 70 0.21
180 86 0.26
181 42 0.13
182 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (177 bp):
TTTTATGACAAAACAAAGGTAATAATGATTTAAAATAGATAATTGTTCAAATAGTCATAACTATT
TGAATGGATTCAACAAACTGATTTATTTTTTAAATCTTGCTTATTAATTCTTGAAATATTAATAA
AGTAGTATTATTTTATTTAGAAAAAGTTTTTATAAACAAAACAACTG
Found at i:63692 original size:181 final size:176
Alignment explanation
Indices: 63378--63776 Score: 437
Period size: 181 Copynumber: 2.2 Consensus size: 176
63368 ATTGATTTGA
* * * *
63378 TAAACAAATTAA-CTTTTTAAATCACTTAG-TTATTAATTTTTGGAATATTAATAAATTAGTTTT
1 TAAACAAATTAATTTTTTTAAA-CTCTT-GCTTATTAATTTTTGAAATATTAAGAAATTAGTTTT
* * *
63441 ATTTTGAATAAGGTTGTATGAACTAAAATAATTGTTTTATGATAAAATAAAATGTCATAACGATT
64 ATTTTGAATAAGCTTGTATGAACTAAAACAATTGTTTTATGATAAAATAAAAGGTCATAACGATT
* * * * ** *
63506 TTAAATAGACAATTATTCAAATAGTCGTAGCTATTTAAATTTGTTCAG
129 TTAAATAAACAATTACTCAAATAGTCATAACTATTTAAACATGATCAG
63554 TAAACAAATTAATTTTTTTAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTAT
1 TAAACAAATTAATTTTTTTAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAG-----T
* * *
63619 TTTATTTTGGATAAGCTTTTATGAACTAAAACAATTGTTTT-TGGTTAAAA-ATAAAGGTCATAA
61 TTTATTTTGAATAAGCTTGTATGAACTAAAACAATTGTTTTAT-GATAAAATA-AAAGGTCATAA
* * * *
63682 TGATTTTAAATAAATAATTACTCAAATAGTCATAACTATTTGAACATGATCGG
124 CGATTTTAAATAAACAATTACTCAAATAGTCATAACTATTTAAACATGATCAG
* * * * * *
63735 TAAACAGATTTATTTTTTCATATCTTTTGCTTATCAATTTTT
1 TAAACAAATTAATTTTTTTA-AACTCTTGCTTATTAATTTTT
63777 TGAATGTTAA
Statistics
Matches: 186, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
175 1 0.01
176 44 0.24
177 8 0.04
180 2 0.01
181 113 0.61
182 18 0.10
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (176 bp):
TAAACAAATTAATTTTTTTAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTTTTAT
TTTGAATAAGCTTGTATGAACTAAAACAATTGTTTTATGATAAAATAAAAGGTCATAACGATTTT
AAATAAACAATTACTCAAATAGTCATAACTATTTAAACATGATCAG
Found at i:63884 original size:19 final size:20
Alignment explanation
Indices: 63860--63897 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63850 CGATATTTAT
63860 TAATAA-ATAAGTTATGAAA
1 TAATAATATAAGTTATGAAA
*
63879 TAATAATATAATTTATGAA
1 TAATAATATAAGTTATGAA
63898 TTTTGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
TAATAATATAAGTTATGAAA
Found at i:64856 original size:19 final size:20
Alignment explanation
Indices: 64816--64857 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
64806 TAATTATAAT
64816 TAATTTTAAATTTTGTTATA
1 TAATTTTAAATTTTGTTATA
*
64836 TAATTTTATATTTTG-TATA
1 TAATTTTAAATTTTGTTATA
64855 TAA
1 TAA
64858 AATTTGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
TAATTTTAAATTTTGTTATA
Found at i:64861 original size:21 final size:20
Alignment explanation
Indices: 64817--64862 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
64807 AATTATAATT
*
64817 AATTTTAAATTTTGTTATAT
1 AATTTTAAATTTTGTTATAA
*
64837 AATTTTATATTTTGTATATAA
1 AATTTTAAATTTTGT-TATAA
64858 AATTT
1 AATTT
64863 GTTTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (20 bp):
AATTTTAAATTTTGTTATAA
Found at i:64981 original size:34 final size:33
Alignment explanation
Indices: 64943--65044 Score: 86
Period size: 34 Copynumber: 3.1 Consensus size: 33
64933 ATTATTAATT
64943 TAATTAATTAATAATTAATAATATATTATAATAC
1 TAATTAATTAATAATTAATAATATA-TATAATAC
* * * *
64977 TAATT-GTTTATAGTTGAATAATCTATATAAT--
1 TAATTAATTAATAATT-AATAATATATATAATAC
* * *
65008 T-ATTAATTATTAATTAATTATATAAATATATAC
1 TAATTAATTAATAATTAATAATATATATA-ATAC
65041 TAAT
1 TAAT
65045 ATTATATAGA
Statistics
Matches: 51, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
30 13 0.25
31 9 0.18
33 14 0.27
34 15 0.29
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (33 bp):
TAATTAATTAATAATTAATAATATATATAATAC
Found at i:65108 original size:25 final size:25
Alignment explanation
Indices: 65063--65129 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
65053 GAAATATTGT
*
65063 TTAAATTATTCATT-TAAAAATTAAA
1 TTAAATTATTAATTATAAAAA-TAAA
*
65088 TTAAATTATTAATTAT-GAAATAAA
1 TTAAATTATTAATTATAAAAATAAA
65112 TT-AATATATTATATTATA
1 TTAAAT-TATTA-ATTATA
65130 TTATTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
23 3 0.08
24 11 0.31
25 21 0.58
26 1 0.03
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (25 bp):
TTAAATTATTAATTATAAAAATAAA
Found at i:65140 original size:24 final size:24
Alignment explanation
Indices: 65113--65179 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
65103 TGAAATAAAT
65113 TAATATATTATATTATATTATTTA
1 TAATATATTATATTATATTATTTA
* * *
65137 TAATAAATTATAATAAATTA-TTA
1 TAATATATTATATTATATTATTTA
*
65160 TTA-AT-TTATATTATAGTTAT
1 TAATATATTATATTATA-TTAT
65180 AATGTTAGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
21 8 0.24
22 4 0.12
23 5 0.15
24 17 0.50
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (24 bp):
TAATATATTATATTATATTATTTA
Found at i:65179 original size:6 final size:5
Alignment explanation
Indices: 65116--65180 Score: 53
Period size: 5 Copynumber: 12.8 Consensus size: 5
65106 AATAAATTAA
* * * *
65116 TATAT TATAT TATAT TAT-T TATAA TAAAT TATAA TAAAT TATTAT TA-ATT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATA-T
65166 TATAT TATAGT TATA
1 TATAT TATA-T TATA
65181 ATGTTAGCTT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
4 5 0.11
5 32 0.68
6 10 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
TATAT
Found at i:66626 original size:36 final size:36
Alignment explanation
Indices: 66573--66658 Score: 147
Period size: 36 Copynumber: 2.4 Consensus size: 36
66563 ATAGATGTAG
66573 TTTGAGAAAT-ATGAAACCAAGAAAGGTTTGTTTAAAC
1 TTTGA-AAATCAT-AAACCAAGAAAGGTTTGTTTAAAC
66610 TTTGAAAATCATAAACCAAGAAAGGTTTGTTTAAAC
1 TTTGAAAATCATAAACCAAGAAAGGTTTGTTTAAAC
66646 TTTGAAAATCATA
1 TTTGAAAATCATA
66659 TTATTTATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 41 0.85
37 7 0.15
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (36 bp):
TTTGAAAATCATAAACCAAGAAAGGTTTGTTTAAAC
Found at i:66887 original size:17 final size:16
Alignment explanation
Indices: 66866--66911 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
66856 AATTATTTGC
66866 TAATTATTATAATTAA
1 TAATTATTATAATTAA
*
66882 TAAATTA-TATAAATAA
1 T-AATTATTATAATTAA
*
66898 TTATT-TTATAATTA
1 TAATTATTATAATTA
66912 TTTGTTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTATTATAATTAA
Found at i:67060 original size:16 final size:16
Alignment explanation
Indices: 67011--67064 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
67001 ACTTATAACA
67011 ATTAT-ATTA-ATAAT
1 ATTATAATTATATAAT
* *
67025 AATATTAATTAT-TTAT
1 ATTA-TAATTATATAAT
67041 ATTATAATTATATAAT
1 ATTATAATTATATAAT
67057 ATTATAAT
1 ATTATAAT
67065 AGTTTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.09
15 8 0.25
16 21 0.66
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATAATTATATAAT
Found at i:67060 original size:25 final size:25
Alignment explanation
Indices: 67012--67061 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
67002 CTTATAACAA
*
67012 TTATATTAATAATAATATTAATTAT
1 TTATATTAATAATAATATAAATTAT
*
67037 TTATATT-ATAATTATATAATATTAT
1 TTATATTAATAATAATATAA-ATTAT
67062 AATAGTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTATATTAATAATAATATAAATTAT
Found at i:67077 original size:45 final size:45
Alignment explanation
Indices: 67037--67155 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 45
67027 TATTAATTAT
*
67037 TTATATT-ATAATTATATAAT-ATTATAATAGTTTATTATTAAAAA
1 TTATATTAATAATTATAAAATAATTATAATA-TTTATTATTAAAAA
* *
67081 TTATTTTAATAATTATAAAATAATTATTATATTTA-TATATAATAAA
1 TTATATTAATAATTATAAAATAATTATAATATTTATTAT-TAA-AAA
*
67127 TTACATATTATTAA-TATATAAATAATTAT
1 TT--ATATTAATAATTATA-AAATAATTAT
67156 CAAATGATTA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
44 9 0.14
45 19 0.30
46 13 0.21
47 4 0.06
48 18 0.29
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (45 bp):
TTATATTAATAATTATAAAATAATTATAATATTTATTATTAAAAA
Found at i:67153 original size:25 final size:23
Alignment explanation
Indices: 67094--67154 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
67084 TTTTAATAAT
* *
67094 TATA-AAATAATTATTATATTTA
1 TATATAAATAATTAATATATTAA
67116 TATAT-AATAAATTACATATTATTAA
1 TATATAAAT-AATTA-ATA-TATTAA
67141 TATATAAATAATTA
1 TATATAAATAATTA
67155 TCAAATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
22 7 0.22
23 5 0.16
24 2 0.06
25 15 0.47
26 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TATATAAATAATTAATATATTAA
Found at i:67165 original size:26 final size:27
Alignment explanation
Indices: 67114--67167 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
67104 TTATTATATT
* *
67114 TATATATAATAAATTACATATTATTAA
1 TATATATAATAAATTACAAATGATTAA
67141 TATATA-AAT-AATTATCAAATGATTAA
1 TATATATAATAAATTA-CAAATGATTAA
67167 T
1 T
67168 TTAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.21
26 13 0.54
27 6 0.25
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (27 bp):
TATATATAATAAATTACAAATGATTAA
Found at i:67662 original size:182 final size:180
Alignment explanation
Indices: 67434--67839 Score: 462
Period size: 182 Copynumber: 2.2 Consensus size: 180
67424 TGGATTTAGA
* * * * *
67434 TTTTTAAATCTCTTACTCATTAATTTTTTAAATGTTAATAAATTAGTATTATTTTATTCTAAATA
1 TTTTTAAATCTCTTACTCATTAATTGTTGAAATATTAATAAATTAGTATTATTTTAATCCAAATA
* *
67499 AGCTTGTATGAACTAA-AATAATTATTTTATGACTAAACA-AAAGGTCAAAATGATTTGAA-ATA
66 AGCTTGTATGAA--AAGAACAATTATTTTATGAC-AAA-ATAAAGATCAAAATG-TTTGAAGATA
** *
67561 GATAATTGTTTTAATAGTCTTAACTATTTGAACTAGTTTGGTAAACACATTTATT
126 GATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGGTAAACACATTTATT
* * ** *
67616 TTTTTAAATCTCTTACTTATTAATTGTTGGAATATTTTTAAATTAGTATTATTTTAATCCGAATA
1 TTTTTAAATCTCTTACTCATTAATTGTTGAAATATTAATAAATTAGTATTATTTTAATCCAAATA
* *
67681 AGCTTGTATGAAAAGGAACAATTATTTTATGACAAAATAAAGATCATAATGTTTTAAGATAGATA
66 AGCTTGTATGAAAA-GAACAATTATTTTATGACAAAATAAAGATCAAAATGTTTGAAGATAGATA
* * * * *
67746 ATTGTTCAAATAGTCATAACTATTTGAACTA-TTTCAGAAAATAGATTTA-G
130 ATTGTTCAAATAGTCATAACTATTTGAACTAGTTT-GGTAAACACATTTATT
* * * * * *
67796 TCTTTAAATCCCTTATTAATTACTTTTTGAAATATTAATAAATT
1 TTTTTAAATCTCTTACTCATTAATTGTTGAAATATTAATAAATT
67840 CATTTTATTA
Statistics
Matches: 188, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
180 46 0.24
181 59 0.31
182 83 0.44
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (180 bp):
TTTTTAAATCTCTTACTCATTAATTGTTGAAATATTAATAAATTAGTATTATTTTAATCCAAATA
AGCTTGTATGAAAAGAACAATTATTTTATGACAAAATAAAGATCAAAATGTTTGAAGATAGATAA
TTGTTCAAATAGTCATAACTATTTGAACTAGTTTGGTAAACACATTTATT
Found at i:68233 original size:174 final size:175
Alignment explanation
Indices: 67863--69328 Score: 730
Period size: 181 Copynumber: 8.4 Consensus size: 175
67853 CAACTGGTTA
* * * *
67863 GGTAAACAGAA-TTATTTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTCA-TT
1 GGTAAACA-AATTTA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATT-AGTA
* * ** *
67926 TTATTTTATTCTTAATAAGC-TAGTATGAATTGAAAA-AATTGATT-TATGGC-AAA-AAAAT--
63 TTATTTTATT-TGAATAAACTTA-TATGAA-CAAAAACAATT-ATTATATGACAAAACAAAATGA
* * * * * *
67984 A--ATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTAAATTAGTTT
124 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* * ** * *
68034 GGTAGATAAATTTATTTTTTAAATCTCTTTGTTATTAATTTTTGAAATATTATTATATTAGTATT
1 GGTAAACAAATTTA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATT
* * * *
68099 ATTTTATTTCGAATAAACTTATATGAACAGAAATAATTATTTTATGACAAAACAAAA-G-GT-AT
65 ATTTTATTT-GAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAATGAATGAT
* *
68161 TTGAAGTATATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
129 TTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
*
68208 GGTAAACAAATTTATTTTGTAAATCTCTTACA-TATTAATTTTTGAAAGATTAATAAATTAGTAT
1 GGTAAACAAATTTATTTT-TAAATCTCTTA-ATTATTAATTTTTGAAATATTAATAAATTAGTAT
* * *
68272 TATTTTACTTTGAATAAACTTGTAT-AATCAAAAACAATTATTATATGTCCAAACAAAATGTAAT
64 TATTTTA-TTTGAATAAACTTATATGAA-CAAAAACAATTATTATATGACAAAACAAAATG----
* * * * * * *
68336 AATGATTTGAAATAGATAATTTTTGAAATGGCCATAATTATTTGAACTGATAT
123 AATGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* * * *
68389 GGTAAACAGATTCACTTTTTAAATCACTTAATTATTAATTTTTGGAATATTAATAAATTAGTATT
1 GGTAAACAAATTTA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATT
* ** *
68454 ATTGTATTTTGAATAAACTTATATG------AAC---T-TT-TGGGACAAAACAAAAGATCATAA
65 ATTTTA-TTTGAATAAACTTATATGAACAAAAACAATTATTATATGACAAAAC-AAA-AT--GAA
* ** * * * * **
68508 CGATTTTCAATAGACAATTGTTCAAATAGTCATAACTATTTGAATTTGTTT
125 TGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* ** *
68559 AGT-AA-AAATATT-TTTTTAAAT-TCTTGTTTATTAATTTTTGAAATATTAAAAAATTAGTATT
1 GGTAAACAAAT-TTATTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATT
* ** * * * * *
68620 ATTTTATTTTGGATAAGTTTTTATGAACTAAAACAATTATTTTATGTCAAAACAAAAGGTCATAA
65 ATTTTA-TTTGAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAA--T--GAA
* * * * * ** *
68685 CGATTTTAAATATG-TGATTGTTCAAATAGTCATAACTATTTAAATTTGTTC
125 TGATTTGAAATA-GATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
** ** * ** *
68736 AATAAATGAATTTATTTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATGTTAATAAATTTAG-
1 GGTAAACAAATTTA-TTTTT-AAATCTCTTAATTATTAA-TTTTTGAAATATTAATAAA-TTAGT
** * * * * *
68799 ATTATTTTATTCCAAATAAGC--ATGT-AAGCTATAAAACAAATATTTTATGACTAAACATAAGA
62 ATTATTTTATT-TGAATAAACTTATATGAA-C-A-AAAACAATTATTATATGACAAAACA-AA-A
* * ** * * * **
68861 TTGGAATGATTTGAAATAGATAATTATTCTAATAGTTTTAACTATTTGAATTGGTTT
121 -T-GAATGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* * *
68918 GGAAAAAAAATTTCCTTTTTAAATCTCTT-ATTA--AA-TTTTGAAATATT-ATCAAATTAGTAT
1 GGTAAACAAATTT-ATTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAAT-AAATTAGTAT
** * * * * * * * * *
68978 TATTTTTAACTAAACAAGCTTCTATGATA-AGAAATAATTGTTTTATGACAAAACAAAAATCTTA
64 TA-TTTTATTTGAATAAACTTATATGA-ACAAAAACAATTATTATATGACAAAAC-AAAA--TGA
* * * * *
69042 ATGATTTGAGACT-GATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTC
124 ATGATTTGA-AATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* * * * * *
69094 GATAAACATATTTATTTTTTTAAATCTCTTACTCATTAATTTTTGAAATATTAAAAAATTAGTAA
1 GGTAAACAAATTTA--TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTAT
* * * * * **
69159 TATTTTATTTCAAATAAGCTTGTTTGATCAAAAAC-A--A--A-A-G----GTC---AT-AATGA
64 TATTTTATTT-GAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAATGAATGA
* ** * * * * * *
69209 TTTGAAACAGATAATCATTCAAATGGCCATAATTATTTTAATTGATTC
128 TTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
* * * *
69257 GGTAAACAAATTTATTTTCAAATTTCTTACTTATT-ATTTTAGAAAATATTAATAAATTAGTATT
1 GGTAAACAAATTTATTTTTAAATCTCTTAATTATTAATTTTTG-AAATATTAATAAATTAGTATT
69321 ATTTTATT
65 ATTTTATT
69329 CCTTCTAAGC
Statistics
Matches: 1021, Mismatches: 193, Indels: 172
0.74 0.14 0.12
Matches are distributed among these distances:
160 6 0.01
161 45 0.04
162 1 0.00
163 52 0.05
164 1 0.00
166 56 0.05
167 9 0.01
168 3 0.00
169 3 0.00
170 60 0.06
171 85 0.08
172 11 0.01
173 10 0.01
174 138 0.14
175 10 0.01
176 68 0.07
177 117 0.11
178 16 0.02
179 7 0.01
180 23 0.02
181 170 0.17
182 116 0.11
183 13 0.01
184 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (175 bp):
GGTAAACAAATTTATTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATTA
TTTTATTTGAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAATGAATGATTT
GAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
Found at i:68443 original size:181 final size:172
Alignment explanation
Indices: 67863--68481 Score: 547
Period size: 174 Copynumber: 3.5 Consensus size: 172
67853 CAACTGGTTA
* * * *
67863 GGTAAACAGAATT-ATTTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTCA-TT
1 GGTAAACA-AATTCA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATT-AGTA
* * ** * *
67926 TTATTTTATTCTTAATAAGC-TAGTATGAATTGAAAA-AATTGATT-TATGGC-AAA-AAAATA-
63 TTATTTTATT-TGAATAAACTTA-TATGAA-CAAAAACAATT-ATTATATGACAAAACAAAAGAT
* * * * * * * *
67985 ATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTAAATTAGTTT
124 ATTTGAAATAGATAATTGTTCAAATAGCCATAATTATTTAAACTAATAT
* * * ** * *
68034 GGTAGATAAATTTATTTTTTAAATCTCTTTGTTATTAATTTTTGAAATATTATTATATTAGTATT
1 GGTAAACAAATTCA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATT
* * * *
68099 ATTTTATTTCGAATAAACTTATATGAACAGAAATAATTATTTTATGACAAAACAAAAGGTATTTG
65 ATTTTATTT-GAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAAGATATTTG
* * * *
68164 AAGTATATAATTGTTCAAATAGTCATAATTATTTAAACTAATTT
129 AAATAGATAATTGTTCAAATAGCCATAATTATTTAAACTAATAT
* *
68208 GGTAAACAAATTTATTTTGTAAATCTCTTACA-TATTAATTTTTGAAAGATTAATAAATTAGTAT
1 GGTAAACAAATTCATTTT-TAAATCTCTTA-ATTATTAATTTTTGAAATATTAATAAATTAGTAT
* * *
68272 TATTTTACTTTGAATAAACTTGTAT-AATCAAAAACAATTATTATATGTCCAAACAAAATGTAAT
64 TATTTTA-TTTGAATAAACTTATATGAA-CAAAAACAATTATTATATGACAAAACAAAA-G----
* * * * *
68336 AATGATTTGAAATAGATAATTTTTGAAATGGCCATAATTATTTGAACTGATAT
122 -AT-ATTTGAAATAGATAATTGTTCAAATAGCCATAATTATTTAAACTAATAT
* * *
68389 GGTAAACAGATTCACTTTTTAAATCACTTAATTATTAATTTTTGGAATATTAATAAATTAGTATT
1 GGTAAACAAATTCA-TTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATT
*
68454 ATTGTATTTTGAATAAACTTATATGAAC
65 ATTTTA-TTTGAATAAACTTATATGAAC
68482 TTTTGGGACA
Statistics
Matches: 369, Mismatches: 56, Indels: 36
0.80 0.12 0.08
Matches are distributed among these distances:
170 12 0.03
171 78 0.21
172 5 0.01
173 10 0.03
174 137 0.37
175 4 0.01
180 2 0.01
181 115 0.31
182 6 0.02
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (172 bp):
GGTAAACAAATTCATTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAATAAATTAGTATTA
TTTTATTTGAATAAACTTATATGAACAAAAACAATTATTATATGACAAAACAAAAGATATTTGAA
ATAGATAATTGTTCAAATAGCCATAATTATTTAAACTAATAT
Found at i:69326 original size:161 final size:161
Alignment explanation
Indices: 69027--69328 Score: 376
Period size: 163 Copynumber: 1.9 Consensus size: 161
69017 GTTTTATGAC
* * * ** *
69027 AAAACAAAAATCTTAATGATTTGAGACTGATAATTGTTCAAATAGTCATAACTATTTGAACTAGT
1 AAAACAAAAATCATAATGATTTGAAACAGATAATCATTCAAATAGCCATAACTATTTGAACTAGT
* * *
69092 TCGATAAACATATTTATTTTTTTAAATCTCTTACTCATTAATTTTTGAAATATTAAAAAATTAGT
66 TCGATAAACAAATTTA-TTTTTCAAATCTCTTACTCATTAATTTTAGAAATATTAAAAAATTAGT
69157 AATATTTTATTTCAAATAAGCTTGTTTGATCA
130 AATATTTTATTTCAAATAAGCTTGTTTGATCA
* * * * *
69189 AAAACAAAAGGTCATAATGATTTGAAACAGATAATCATTCAAATGGCCATAATTATTTTAA-TTG
1 AAAACAAAA-ATCATAATGATTTGAAACAGATAATCATTCAAATAGCCATAACTATTTGAACTAG
* * * *
69253 ATTCGGTAAACAAATTTA-TTTTCAAATTTCTTACTTATT-ATTTTAGAAAATATTAATAAATTA
65 -TTCGATAAACAAATTTATTTTTCAAATCTCTTACTCATTAATTTTAG-AAATATTAAAAAATTA
*
69316 GTATTATTTTATT
128 GTAATATTTTATT
69329 CCTTCTAAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
160 6 0.05
161 45 0.38
162 11 0.09
163 56 0.47
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (161 bp):
AAAACAAAAATCATAATGATTTGAAACAGATAATCATTCAAATAGCCATAACTATTTGAACTAGT
TCGATAAACAAATTTATTTTTCAAATCTCTTACTCATTAATTTTAGAAATATTAAAAAATTAGTA
ATATTTTATTTCAAATAAGCTTGTTTGATCA
Found at i:69923 original size:181 final size:180
Alignment explanation
Indices: 69576--70107 Score: 448
Period size: 181 Copynumber: 2.9 Consensus size: 180
69566 ACTGATTTGT
* * * * * * * *
69576 AAACATATTTATTTTTTAAAATTTTTTACTTATTAA-TTTTTAAAATATTATTAAATTAGTATTA
1 AAACAAATTTACTTTTT-AAATCTCTTACTAATTAAGTTTCT-AAATATTAATAAATTAATATTA
* * * * * * * * *
69640 TTTTAATCAGAATAAGC-TTG-TACGAACAAAAA-ATTTGTTTTACGACAAAAGAAAATGTCATA
64 TTTTATTCTGAACAAACATAGCT--GAACAAAAACAATTG-TTTATGACAAAATAAAATGTAATA
* * ** * * *
69702 ACGATTTAAAATAGATAATTATTCATATTGTCGTAACTATTTTAACTGGTTTAAC
126 ACGATTTAAAATAGATAATTATTCAAATAGTCAAAACTATTTGAAATGGCTTAAC
** * * * ** * *
69757 AATTAAATTTATTTTTTAATTTTCTTGGTTATTAAGTTTC-AAAGTATTATTAAATTAATATTAT
1 AAACAAATTTACTTTTTAAATCTCTTACTAATTAAGTTTCTAAA-TATTAATAAATTAATATTAT
* * * * *
69821 TTTATTCT-AA-ATACAATAGCATGAACAGAATCAATTGTTTAATGACAAAATAAAAGGTTATAA
65 TTTATTCTGAACAAAC-ATAGC-TGAACAAAAACAATTGTTT-ATGACAAAATAAAATGTAATAA
* * ***
69884 CAATTTGAAATAGATAATTATTCAAATAGTCAAAACTATTTGAAATGGCTTGGT
127 CGATTTAAAATAGATAATTATTCAAATAGTCAAAACTATTTGAAATGGCTTAAC
* *
69938 AAACAAATTTACTTTTTAAATCTCTTACTAATTAATTTTCTAAATATTAATAAATTAGTATTATT
1 AAACAAATTTACTTTTTAAATCTCTTACTAATTAAGTTTCTAAATATTAATAAATTAATATTATT
* * * * *
70003 TTATTTTGAACAAACTTATCTTAACAAAAACAATTGTTTATGACAAAATAAAATGTAATAATGAT
66 TTATTCTGAACAAACATAGCTGAACAAAAACAATTGTTTATGACAAAATAAAATGTAATAACGAT
* * * *
70068 TTAAAATAAATAATTATTCAAATAGTTATAATTATTTGAA
131 TTAAAATAGATAATTATTCAAATAGTCAAAACTATTTGAA
70108 CTGATTCGGT
Statistics
Matches: 280, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
178 2 0.01
179 5 0.02
180 108 0.39
181 153 0.55
182 9 0.03
183 3 0.01
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (180 bp):
AAACAAATTTACTTTTTAAATCTCTTACTAATTAAGTTTCTAAATATTAATAAATTAATATTATT
TTATTCTGAACAAACATAGCTGAACAAAAACAATTGTTTATGACAAAATAAAATGTAATAACGAT
TTAAAATAGATAATTATTCAAATAGTCAAAACTATTTGAAATGGCTTAAC
Found at i:70140 original size:180 final size:178
Alignment explanation
Indices: 69560--70172 Score: 555
Period size: 180 Copynumber: 3.4 Consensus size: 178
69550 ACTCTTAAAC
* * * * * *
69560 ATTTGAACTGATTTGTAAACATATTTATTTTTTAAAATTTTTTACTTATTAATTTTTAAAATATT
1 ATTTGAACTGATTGGTAAACAAATTTATTTTTT-AAATCTCTTACTAATTAATTTTTAAAGTATT
* * * * * * *
69625 ATTAAATTAGTATTATTTTAATCAGAATAAGCTTGTAC-GAACAAAAA-ATTTGTTTTACGACAA
65 AATAAATTAGTATTATTTTATTCTGAA-AAACTTAT-CTGAACAAAAACAATTG-TTTATGACAA
* * * * *
69688 AAGAAAATGTCATAACGATTTAAAATAGATAATTATTCATATTGTCGTAACT
127 AATAAAATGTAATAACGATTTAAAATAGATAATTATTCAAATAGTCATAACT
* * * * * ** * * *
69740 ATTTTAACTGGTT--TAACAATTAAATTTATTTTTTAATTTTCTTGGTTATTAAGTTTCAAAGTA
1 ATTTGAACTGATTGGT-A-AA-CAAATTTATTTTTTAAATCTCTTACTAATTAATTTTTAAAGTA
* * * * * * *
69803 TTATTAAATTAATATTATTTTATTCT-AAATACAATAGCATGAACAGAATCAATTGTTTAATGAC
63 TTAATAAATTAGTATTATTTTATTCTGAAAAAC-TTATC-TGAACAAAAACAATTGTTT-ATGAC
* * * * *
69867 AAAATAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCAAAACT
125 AAAATAAAATGTAATAACGATTTAAAATAGATAATTATTCAAATAGTCATAACT
* * *
69921 ATTTGAAATGGCTTGGTAAACAAATTTACTTTTTAAATCTCTTACTAATTAATTTTCTAAA-TAT
1 ATTTGAACT-GATTGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAATTTT-TAAAGTAT
* *
69985 TAATAAATTAGTATTATTTTATTTTGAACAAACTTATCTTAACAAAAACAATTGTTTATGACAAA
64 TAATAAATTAGTATTATTTTATTCTGAA-AAACTTATCTGAACAAAAACAATTGTTTATGACAAA
* * * *
70050 ATAAAATGTAATAATGATTTAAAATAAATAATTATTCAAATAGTTATAATT
128 ATAAAATGTAATAACGATTTAAAATAGATAATTATTCAAATAGTCATAACT
* *
70101 ATTTGAACTGATTCGGTAAATAGAA-TTATTTTCTAAATCTCTTA-TAA-T--TTTTTAAAGTAT
1 ATTTGAACTGATT-GGTAAACA-AATTTATTTTTTAAATCTCTTACTAATTAATTTTTAAAGTAT
70161 TAATAAATTAGT
64 TAATAAATTAGT
70173 TTTAATAGTA
Statistics
Matches: 349, Mismatches: 67, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
175 4 0.01
176 19 0.05
178 5 0.01
179 10 0.03
180 150 0.43
181 143 0.41
182 13 0.04
183 4 0.01
184 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (178 bp):
ATTTGAACTGATTGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAATTTTTAAAGTATTA
ATAAATTAGTATTATTTTATTCTGAAAAACTTATCTGAACAAAAACAATTGTTTATGACAAAATA
AAATGTAATAACGATTTAAAATAGATAATTATTCAAATAGTCATAACT
Found at i:70532 original size:15 final size:14
Alignment explanation
Indices: 70512--70550 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
70502 TATTTTATAG
70512 TATTAATATAATAAT
1 TATTAATATAAT-AT
*
70527 TATTAATATCATAT
1 TATTAATATAATAT
*
70541 TATAAATATA
1 TATTAATATA
70551 TTATATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (14 bp):
TATTAATATAATAT
Found at i:73660 original size:14 final size:14
Alignment explanation
Indices: 73618--73661 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
73608 CAATATCTTA
* *
73618 ATATTATAATAATT
1 ATATTAAAATATTT
73632 A-ATTAAAATTATTT
1 ATATTAAAA-TATTT
73646 ATATTAAAATATTT
1 ATATTAAAATATTT
73660 AT
1 AT
73662 TTTATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 6 0.23
14 13 0.50
15 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATTAAAATATTT
Found at i:73680 original size:14 final size:14
Alignment explanation
Indices: 73637--73709 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 14
73627 TAATTAATTA
73637 AAATTAT-TTATATT
1 AAATTATATT-TATT
73651 AAA--ATATTTATT
1 AAATTATATTTATT
73663 ---TTATATTTATT
1 AAATTATATTTATT
73674 AAATTATATTTTATAT
1 AAATTATA-TTTAT-T
*
73690 AATATTATTATTTATA
1 AA-ATTA-TATTTATT
73706 AAAT
1 AAAT
73710 AAATTATATA
Statistics
Matches: 48, Mismatches: 1, Indels: 19
0.71 0.01 0.28
Matches are distributed among these distances:
11 9 0.19
12 6 0.12
13 2 0.04
14 8 0.17
15 7 0.15
16 5 0.10
17 9 0.19
18 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AAATTATATTTATT
Found at i:73690 original size:23 final size:25
Alignment explanation
Indices: 73647--73699 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 25
73637 AAATTATTTA
*
73647 TATTAAAATATTTATTTTAT-AT-T
1 TATTAAAATATTTATTATATAATAT
*
73670 TATTAAATTATATT-TTATATAATAT
1 TATTAAAATAT-TTATTATATAATAT
73695 TATTA
1 TATTA
73700 TTTATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 15 0.60
24 4 0.16
25 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTAAAATATTTATTATATAATAT
Found at i:73703 original size:17 final size:16
Alignment explanation
Indices: 73663--73734 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 16
73653 AATATTTATT
73663 TTATATTTAT-TAA-A
1 TTATATTTATATAATA
73677 TTATATTTTATATAATA
1 TTATA-TTTATATAATA
*
73694 TTATTATTTATAAAATAAA
1 TTA-TATTTATATAAT--A
*
73713 TTATATATTAAATAATA
1 TTATAT-TTATATAATA
73730 -TATAT
1 TTATAT
73735 AATAAAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
14 5 0.10
15 5 0.10
16 8 0.17
17 14 0.29
18 5 0.10
19 11 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATATTTATATAATA
Found at i:73760 original size:17 final size:19
Alignment explanation
Indices: 73740--73777 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
73730 TATATAATAA
73740 AATTTTAT-AATAG-TAAT
1 AATTTTATAAATAGTTAAT
73757 AA-TTTATAAATAGTTAAT
1 AATTTTATAAATAGTTAAT
73775 AAT
1 AAT
73778 ATAATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
AATTTTATAAATAGTTAAT
Found at i:73776 original size:18 final size:16
Alignment explanation
Indices: 73743--73777 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
73733 ATAATAAAAT
73743 TTTATAATAGTAATAA
1 TTTATAATAGTAATAA
73759 TTTATAAATAGTTAATAA
1 TTTAT-AATAG-TAATAA
73777 T
1 T
73778 ATAATAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (16 bp):
TTTATAATAGTAATAA
Found at i:73796 original size:17 final size:17
Alignment explanation
Indices: 73774--73837 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
73764 AAATAGTTAA
73774 TAATATAATAATATTAT
1 TAATATAATAATATTAT
* * *
73791 TAATATAGTATTATTAA
1 TAATATAATAATATTAT
* *
73808 TATTATAATTATATTAATT
1 TAATATAATAATATT-A-T
73827 TAATTATAATA
1 TAA-TATAATA
73838 TTTTAAAATT
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
17 25 0.74
18 1 0.03
19 2 0.06
20 6 0.18
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
TAATATAATAATATTAT
Found at i:73842 original size:14 final size:14
Alignment explanation
Indices: 73800--73843 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
73790 TTAATATAGT
*
73800 ATTATTAATATTATA
1 ATTA-TAATATTTTA
* *
73815 ATTATATTAATTTA
1 ATTATAATATTTTA
73829 ATTATAATATTTTA
1 ATTATAATATTTTA
73843 A
1 A
73844 AATTTATTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTATAATATTTTA
Found at i:74036 original size:42 final size:39
Alignment explanation
Indices: 73932--74055 Score: 92
Period size: 42 Copynumber: 3.0 Consensus size: 39
73922 ATTATATTTA
** * *
73932 ATTAATAT-ATAATATTAATTATTTGTATAATTAATAAT
1 ATTAATATAATAATATTAATTATAAGAATAATAAATAAT
*
73970 ATTACTA-AATATTATAGTTAAATTATAAGAATAACTAAATTATAT
1 ATTAATATAATA--ATA-TT-AATTATAAGAATAA-TAAA-TA-AT
*
74015 ATTAATATAATAATATTAATTATTAGTAATTAATAAA-AAT
1 ATTAATATAATAATATTAATTATAAG-AA-TAATAAATAAT
74055 A
1 A
74056 AATATGTTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
38 9 0.13
40 6 0.09
41 3 0.04
42 19 0.28
43 11 0.16
44 8 0.12
45 8 0.12
46 4 0.06
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (39 bp):
ATTAATATAATAATATTAATTATAAGAATAATAAATAAT
Found at i:74471 original size:181 final size:178
Alignment explanation
Indices: 74048--74475 Score: 475
Period size: 177 Copynumber: 2.4 Consensus size: 178
74038 TAGTAATTAA
* * * * **
74048 TAAAAATAAATATGTTTATTGAACAAGTTTAAATAATTATAATTATTTGAACAATTATTTATTGA
1 TAAAAATAAATATGTTTACTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTC
* ***
74113 AAATCGTTATAACCTTTTGCTTTGTAATAAAATAATTTTTTCTACTCATACAAGCTTATTTTGAA
66 AAATCGTTATAACCTTTTGCTTTGTAATAAAAAAATTTTTTCTACTCATACAAGCTTATTCAAAA
* **
74178 TAAAATAATCTAATTTATTAAATTAAGACAATTAATAAGTAAACTATT
131 TAAAATAATCTAATATATTAAATTAAGACAATTAATAAGTAAAAGATT
* * *
74226 TAAACATAAATTTGTTTACTGAA-AAGTTTAAATCGTTATGACTATTTGAACAATTATTTATTTC
1 TAAAAATAAATATGTTTACTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTC
* * * * * ** *
74290 AAATTGTTATGACTTTTTGTTTTGTCATAAAACAAATTTTTT-TGTTCATACCAGCTTATTCAAA
66 AAATCGTTATAACCTTTTGCTTTGTAATAAAA-AAATTTTTTCTACTCATACAAGCTTATTCAAA
* **
74354 ATAAAATAATATTAATATATTAATATTTCGACAAGTT-ATAAGTAAAAGATT
130 ATAAAATAAT-CTAATATATTAA-ATTAAGACAA-TTAATAAGTAAAAGATT
* * * * * ** *
74405 TAAAAAATAAATATGTTTGCCGAACAAGTTCAAATAGTCATGACTATTTGAATAACAATCTATTT
1 T-AAAAATAAATATGTTTACTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTT
74470 CAAATC
65 CAAATC
74476 ATTGTGAGCT
Statistics
Matches: 205, Mismatches: 39, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
177 88 0.43
178 38 0.19
179 21 0.10
180 20 0.10
181 38 0.19
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (178 bp):
TAAAAATAAATATGTTTACTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTC
AAATCGTTATAACCTTTTGCTTTGTAATAAAAAAATTTTTTCTACTCATACAAGCTTATTCAAAA
TAAAATAATCTAATATATTAAATTAAGACAATTAATAAGTAAAAGATT
Found at i:75114 original size:23 final size:24
Alignment explanation
Indices: 75086--75140 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
75076 TATTTATTGT
75086 TATTATTTATTATAACAA-TATAA
1 TATTATTTATTATAACAATTATAA
*
75109 TATTATTTATTATAATAATTATAA
1 TATTATTTATTATAACAATTATAA
*
75133 -AATATTTA
1 TATTATTTA
75141 AGTATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTATTTATTATAACAATTATAA
Found at i:75214 original size:16 final size:17
Alignment explanation
Indices: 75190--75236 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
75180 ATTATTATTC
*
75190 AAATTATTAAATTAA-A
1 AAATAATTAAATTAATA
*
75206 AAATAATTATATTAATA
1 AAATAATTAAATTAATA
* *
75223 AGATAATTTAATTA
1 AAATAATTAAATTA
75237 TTTTATATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATAATTAAATTAATA
Found at i:75768 original size:182 final size:180
Alignment explanation
Indices: 75414--75823 Score: 391
Period size: 182 Copynumber: 2.3 Consensus size: 180
75404 TGTTACAATG
* * * * * *
75414 ATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTTGATAAACTTATTTTTT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACTGATTTTTT
* *
75479 TTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCGAATAAGC
66 TTAAATATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATCATTTTAATCCGAATAAGC
* * * * ** *
75544 TCATATGGATCGAAACATTTGTTTTATGACAAAACAAAAAAGTCATAAGA
131 TCATATGGAACAAAAAAATCATTATATGACAAAACAAAAAAGTCATAAGA
* *
75594 ATTTGAAATAAATAATTATTCAGATAGTCATAACGATTTGAATTTGTTCGATAAA-TAGATTTAT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACT-GA-TT-T
* * *** *
75658 TTTTTAAATATTTTATTTATTAATTGTCT-TAATATTAATAAATTTGTATCATTTT-ATTCGAAG
63 TTTTTAAATATTTTACTTATTAATTGT-TGAAATATTAATAAATCAATATCATTTTAATCCGAA-
* * * *
75721 TAAGCTTATAT-GAACAAATAAAAATCATTATATGAC-AAACCAAAAAGTTAT-AGCG
126 TAAGCTCATATGGAAC-AA-AAAAATCATTATATGACAAAACAAAAAAGTCATAAG-A
** * * * ** *
75776 ATTCCAAATCAATAATTGTTCAAATAGCCATAATTATTTAAACTTGTT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTT
75824 TGGTAAATAA
Statistics
Matches: 185, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
179 1 0.01
180 49 0.26
181 13 0.07
182 109 0.59
183 13 0.07
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACTGATTTTTT
TTAAATATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATCATTTTAATCCGAATAAGC
TCATATGGAACAAAAAAATCATTATATGACAAAACAAAAAAGTCATAAGA
Found at i:76027 original size:13 final size:13
Alignment explanation
Indices: 76009--76050 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
75999 ATCTCAAAAT
*
76009 ATTTTAATTATTG
1 ATTTTAATAATTG
76022 ATTTTAATAATT-
1 ATTTTAATAATTG
*
76034 ATTTAAATAATTG
1 ATTTTAATAATTG
76047 -TTTT
1 ATTTT
76051 CGATAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATTTTAATAATTG
Found at i:76036 original size:25 final size:25
Alignment explanation
Indices: 76008--76061 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
75998 AATCTCAAAA
* *
76008 TATTTTAATTATTGATTTT-AATAAT
1 TATTTAAATAATTG-TTTTCAATAAT
*
76033 TATTTAAATAATTGTTTTCGATAAT
1 TATTTAAATAATTGTTTTCAATAAT
76058 TATT
1 TATT
76062 ATTCTAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (25 bp):
TATTTAAATAATTGTTTTCAATAAT
Found at i:76042 original size:12 final size:12
Alignment explanation
Indices: 76008--76061 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
75998 AATCTCAAAA
*
76008 TATTTTAATTAT
1 TATTTTAATAAT
76020 TGATTTTAATAAT
1 T-ATTTTAATAAT
*
76033 TATTTAAATAAT
1 TATTTTAATAAT
* *
76045 TGTTTTCGATAAT
1 TATTTT-AATAAT
76058 TATT
1 TATT
76062 ATTCTAATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
12 15 0.44
13 19 0.56
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (12 bp):
TATTTTAATAAT
Found at i:76943 original size:12 final size:12
Alignment explanation
Indices: 76909--76943 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
76899 AATATTATTA
*
76909 TTAATTAGTAGT
1 TTAATTAATAGT
76921 TTAATTAAATAGT
1 TTAATT-AATAGT
76934 TTAATTAATA
1 TTAATTAATA
76944 TTCTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:77021 original size:15 final size:15
Alignment explanation
Indices: 76978--77025 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 15
76968 AATTGTTATT
76978 ATTAAGATAATAATA
1 ATTAAGATAATAATA
76993 ATGTTATA-ATTAATAATA
1 A--TTA-AGA-TAATAATA
77011 ATTAAGATAATAATA
1 ATTAAGATAATAATA
77026 TAGTTTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
15 10 0.36
16 4 0.14
17 4 0.14
18 10 0.36
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
ATTAAGATAATAATA
Found at i:77316 original size:13 final size:14
Alignment explanation
Indices: 77298--77371 Score: 64
Period size: 13 Copynumber: 5.4 Consensus size: 14
77288 CCCTTAGATT
77298 TAATATTATT-TTA
1 TAATATTATTATTA
77311 TAATATTATTATTA
1 TAATATTATTATTA
* * *
77325 TTATAATTATAAATA
1 TAAT-ATTATTATTA
* *
77340 T-TTAATATTATTA
1 TAATATTATTATTA
77353 TAATAATTATTATTA
1 TAAT-ATTATTATTA
77368 -AATA
1 TAATA
77372 ATAATTTAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
13 19 0.40
14 11 0.23
15 18 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAATATTATTATTA
Found at i:77354 original size:25 final size:23
Alignment explanation
Indices: 77308--77356 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
77298 TAATATTATT
*
77308 TTATAATATTATTATTATTATAA
1 TTATAATATTAATATTATTATAA
77331 TTATAAATATTTAATATTATTATAA
1 TTAT-AATA-TTAATATTATTATAA
77356 T
1 T
77357 AATTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.17
24 4 0.17
25 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTATAATATTAATATTATTATAA
Found at i:77358 original size:22 final size:22
Alignment explanation
Indices: 77295--77363 Score: 63
Period size: 25 Copynumber: 3.1 Consensus size: 22
77285 AACCCCTTAG
*
77295 ATTTAATATTATT-TTAT-AAT
1 ATTTAATATTATTATAATAAAT
*
77315 A-TTATTATTATTATAATTATAAAT
1 ATTTAATATTATTAT-A--ATAAAT
*
77339 ATTTAATATTATTATAATAATT
1 ATTTAATATTATTATAATAAAT
77361 ATT
1 ATT
77364 ATTAAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 10 0.26
20 2 0.05
22 8 0.21
23 2 0.05
24 5 0.13
25 12 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTAATATTATTATAATAAAT
Found at i:77366 original size:25 final size:25
Alignment explanation
Indices: 77312--77371 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
77302 ATTATTTTAT
* *
77312 AATATT-ATTATTATTATAATTATA
1 AATATTAAATATTATTATAATAATA
* *
77336 AATATTTAATATTATTATAATAATT
1 AATATTAAATATTATTATAATAATA
*
77361 ATTATTAAATA
1 AATATTAAATA
77372 ATAATTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 6 0.20
25 24 0.80
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
AATATTAAATATTATTATAATAATA
Found at i:77487 original size:25 final size:25
Alignment explanation
Indices: 77418--77491 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
77408 AATATTTTGA
**
77418 ATAATT-AATTAAATTATAAT-TA-
1 ATAATTAAATTAAATTATTTTATAT
*
77440 ATAATTAATATTTAACAAT-TTTTATAT
1 ATAATTAA-A-TTAA-ATTATTTTATAT
77467 ATAATTAAATTAAATTATTTTATAT
1 ATAATTAAATTAAATTATTTTATAT
77492 TATTTAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
22 6 0.15
23 1 0.02
24 3 0.07
25 18 0.44
26 5 0.12
27 8 0.20
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (25 bp):
ATAATTAAATTAAATTATTTTATAT
Found at i:77579 original size:21 final size:22
Alignment explanation
Indices: 77535--77580 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
77525 AAATTGATTA
*
77535 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
77557 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
77578 TTA
1 TTA
77581 TAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:78192 original size:17 final size:17
Alignment explanation
Indices: 78170--78242 Score: 62
Period size: 17 Copynumber: 4.2 Consensus size: 17
78160 TCTTAATATG
78170 ATATAAGTAAT-TTATTA
1 ATATAA-TAATATTATTA
*
78187 ATATAACTTATATTA-TA
1 ATATAA-TAATATTATTA
78204 ATATAAATAATA-TATATA
1 ATAT-AATAATATTAT-TA
*
78222 AGTATAATAATATTACTA
1 A-TATAATAATATTATTA
78240 ATA
1 ATA
78243 GAAGACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
16 2 0.04
17 21 0.46
18 18 0.39
19 5 0.11
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
ATATAATAATATTATTA
Found at i:78213 original size:21 final size:19
Alignment explanation
Indices: 78195--78234 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
78185 TAATATAACT
78195 TATATTATAA-TATAAATAA
1 TATA-TATAAGTATAAATAA
78214 TATATATAAGTAT-AATAA
1 TATATATAAGTATAAATAA
78232 TAT
1 TAT
78235 TACTAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TATATATAAGTATAAATAA
Found at i:78221 original size:18 final size:18
Alignment explanation
Indices: 78165--78234 Score: 65
Period size: 17 Copynumber: 4.0 Consensus size: 18
78155 TATAATCTTA
* * *
78165 ATATGATATAAGTAATTT
1 ATATAATATAAATAATAT
* *
78183 AT-TAATATAACTTATAT
1 ATATAATATAAATAATAT
78200 -TATAATATAAATAATAT
1 ATATAATATAAATAATAT
78217 ATATAAGTAT-AATAATAT
1 ATATAA-TATAAATAATAT
78235 TACTAATAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
16 1 0.02
17 24 0.56
18 15 0.35
19 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (18 bp):
ATATAATATAAATAATAT
Found at i:78504 original size:12 final size:12
Alignment explanation
Indices: 78487--78529 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
78477 ATAATAAATC
*
78487 ATATTATTTTTA
1 ATATTATTATTA
78499 ATATTATTATTA
1 ATATTATTATTA
*
78511 ATTTTATTAATTA
1 ATATTATT-ATTA
78524 A-ATTAT
1 ATATTAT
78530 AATATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:79603 original size:17 final size:16
Alignment explanation
Indices: 79583--79614 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
79573 TTATATGCTA
79583 ATTATAATAATTATAAT
1 ATTATAAT-ATTATAAT
79600 ATTATAATATTATAA
1 ATTATAATATTATAA
79615 ATTTTGTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATAATATTATAAT
Found at i:79605 original size:8 final size:8
Alignment explanation
Indices: 79583--79614 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
79573 TTATATGCTA
79583 ATTATAAT
1 ATTATAAT
79591 AATTATAAT
1 -ATTATAAT
79600 ATTATAAT
1 ATTATAAT
79608 ATTATAA
1 ATTATAA
79615 ATTTTGTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
ATTATAAT
Found at i:79698 original size:23 final size:22
Alignment explanation
Indices: 79672--79724 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
79662 AAAATAATAC
* *
79672 TAATTTAATAATATTTTAAAAAT
1 TAATTTAAGAA-ATTTAAAAAAT
79695 TAATATGTAAGAAATTTAAAAAAT
1 TAAT-T-TAAGAAATTTAAAAAAT
*
79719 AAATTT
1 TAATTT
79725 GTTTACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 1 0.04
23 5 0.20
24 14 0.56
25 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
TAATTTAAGAAATTTAAAAAAT
Found at i:80535 original size:177 final size:175
Alignment explanation
Indices: 80113--80557 Score: 436
Period size: 178 Copynumber: 2.5 Consensus size: 175
80103 AATCATTATG
* *
80113 ATGTTTTGTCATAAAATATTTGTTTTTGATCATACAAGCTTATTCGAAATAAAATATTACTAATC
1 ATGTTTTGTCATAAAATATTTGTTTTT-ATCATACAAGCTTATTTG-AGTAAAATA--ACTAAT-
* * * * *
80178 TT-TTAATATTTCAAAAATTAATAAGAGATTTACAAAAAATATATATATTTATTGAACCAGTTTA
61 TTAATAATATTTCAAAAATTAATAAGAGATTTACAAAAAATATATATATTTACTAAACCAATTCA
** ** *
80242 AATAGTTATGACTATTTGAACAACTATCTGTCTCAAATCATTAAGATCTT
126 AATAGTTAAAACTATTAAAACAACTATCTATCTCAAATCATTAAGATCTT
* * * * *
80292 -TGTTTTGTCATAAAACAATTATTTCTTATCATAGAAACTTATTT-AGTTAAAAATAATACTAAT
1 ATGTTTTGTCATAAAATATTTGTTT-TTATCATACAAGCTTATTTGAG-T-AAAAT-A-ACTAAT
* * *
80355 TTAATAATATTTCAAAATTTAATAAGAGATTTA-AAAAAATAT-TTTTTTTACTAAACCAATTCA
61 TTAATAATATTTCAAAAATTAATAAGAGATTTACAAAAAATATATATATTTACTAAACCAATTCA
* * * * *
80418 AATAGTTAAAACTATTAAAATAATTATCTATTTCAAATCGTTCCA-ATCTT
126 AATAGTTAAAACTATTAAAACAACTATCTATCTCAAATCATT-AAGATCTT
* * *
80468 ATGTTTAGTCATAAAATATTTGTTTTATATCTTACATGCTTATTTGGAGTAAAATAAGCTAAATT
1 ATGTTTTGTCATAAAATATTTGTTTT-TATCATACAAGCTTATTT-GAGTAAAATAA-CT-AATT
*
80533 TAATAACA-TTCAAAAAATTAATAAG
62 TAATAATATTTC-AAAAATTAATAAG
80558 CAAAAGATTT
Statistics
Matches: 218, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
175 1 0.00
176 61 0.28
177 75 0.34
178 76 0.35
179 5 0.02
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (175 bp):
ATGTTTTGTCATAAAATATTTGTTTTTATCATACAAGCTTATTTGAGTAAAATAACTAATTTAAT
AATATTTCAAAAATTAATAAGAGATTTACAAAAAATATATATATTTACTAAACCAATTCAAATAG
TTAAAACTATTAAAACAACTATCTATCTCAAATCATTAAGATCTT
Found at i:80679 original size:25 final size:25
Alignment explanation
Indices: 80651--80702 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80641 TAATTAAATT
80651 ATTAATATAGA-ATTAATTAATAATA
1 ATTAATATAGATATTAA-TAATAATA
* *
80676 ATTAATATTGATATTAATAATCATA
1 ATTAATATAGATATTAATAATAATA
80701 AT
1 AT
80703 ATTAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
ATTAATATAGATATTAATAATAATA
Found at i:80720 original size:25 final size:25
Alignment explanation
Indices: 80662--80738 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 25
80652 TTAATATAGA
*
80662 ATTAATTA-ATAATAATTAATATTGAT
1 ATTAATAATATAAT-ATTAATATT-AT
80688 ATTAATAATCATAATATTAATATT-T
1 ATTAATAAT-ATAATATTAATATTAT
*
80713 AGTT-ATAATATTAATATTATTATTAT
1 A-TTAATAATA-TAATATTAATATTAT
80739 GAGGTATTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
24 1 0.02
25 19 0.43
26 10 0.23
27 9 0.20
28 5 0.11
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (25 bp):
ATTAATAATATAATATTAATATTAT
Found at i:80848 original size:22 final size:24
Alignment explanation
Indices: 80800--80854 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
80790 ATAATATTAT
*
80800 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
80824 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
80846 ATAACTATT
1 ATAAATATT
80855 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:81691 original size:177 final size:177
Alignment explanation
Indices: 81206--82175 Score: 782
Period size: 177 Copynumber: 5.4 Consensus size: 177
81196 CCGAGTAAGC
* * * * *
81206 TCAAATAGTTATAACTGTTTAAACAAATT-TTTATTTCTAAT-AGTTATGATCTTTTGTTTTGTC
1 TCAAATAGTTATGACTATTTGAAC-AATTATCTATTTCAAATCA-TTATGATCTTTTGTTTTGTC
* * *
81269 ATAAAACAATTGTTT-CTATTC-ATACAAGTTTATTCAAAATAAAATAATACTACTTTATTAATA
64 ATAAAACAATTGTTTCCT-TTCAATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA
* * * *
81332 TTTTGTAAATTAATAGGTAGGAGATTTAAAAAATAAATCTGTTTACCAAACAAGT
128 TTTCGAAAATTAATA---A-GAGATTTAAAAAATAAATCTATTTACTAAACAA-T
* * * * *
81387 TCAAATAGTCAT-ATCCATTAGAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCA
1 TCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCA
* * ** *
81451 TAAAACAATTGTTT-CTGTTCATATAGAA--TTATTCAAAATAAAATAATTTTGATTTATTAATA
65 TAAAACAATTGTTTCCT-TTCA-ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA
* * *
81513 TTTTGAAAATTAATAAGTGATTTAAAAATTAAATCTATTTACTAAATCAAT
128 TTTCGAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTAAA-CAAT
* * *
81564 TCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGATC-TTTATTTTGTCAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCAT
* * * *
81628 ACAACAATTGTTTCCTTTCAATACAAGCTTATTCGAATTAAAATGATACTAATTTAATAATATTT
66 AAAACAATTGTTTCCTTTCAATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTT
* * ** *
81693 CAAAAATTAATAAAAGATTTAAAAAATAAA--TATGTTAGCCGAACTAGT
131 CGAAAATTAATAAGAGATTTAAAAAATAAATCTAT-TTA-CTAAAC-AAT
* * * * * *
81741 TCAAATAGTTAAGACTA--T-CAGAATAATCTATTTCAAATCATTCT-ATCCTTTTGTTTAGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAT-CTTTTGTTTTGTCA
* ** * * * * *
81802 TAAAACAATTATTTCAATTC-ATACAAGCTTATTTGGAATAAAATAATATTAATTTGTTAACA-T
65 TAAAACAATTGTTTCCTTTCAATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
* * * * *
81865 TCGAAAAATTAAAGCAAGAGATTTAAAAAAATAAATTTGTATACTGAACAATT
130 TCG-AAAATT-AA-TAAGAGATTT-AAAAAATAAATCTATTTACTAAACAA-T
* * * * *
81918 TCAAATAGATATGACTATTT-AGACAATTATCTATTTAAAATTATTTTGA-CATTTTGTTTTATC
1 TCAAATAGTTATGACTATTTGA-ACAATTATCTATTTCAAATCATTATGATC-TTTTGTTTTGTC
* ** * * *
81981 ATAAAATAATTGTTTCAGTT-AATAAAAACTTA-TCTGAAATAAAATAATACTACTTTATTAATA
64 ATAAAACAATTGTTTCCTTTCAATACAAGCTTATTC-GAAATAAAATAATACTAATTTATTAATA
* * * * * *
82044 TTTCAAAAATTATTAAGCAAGAAATTTAAAAACTAAAGCTATTT-TTCAAAGCAGT
128 TTTCGAAAATTAATAAG--AG--ATTTAAAAAATAAATCTATTTACT-AAA-CAAT
* * * * * *
82099 TCTAATAGTTATGACTATTTGAACAAATAT-TAATATCAAATCGTTAGGATCTTTT-TTTCGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCT-ATTTCAAATCATTATGATCTTTTGTTTTGTCA
82162 TAAAACAATTGTTT
65 TAAAACAATTGTTT
82176 TTTTNNNNNN
Statistics
Matches: 634, Mismatches: 116, Indels: 79
0.76 0.14 0.10
Matches are distributed among these distances:
173 5 0.01
174 61 0.10
175 37 0.06
176 41 0.06
177 178 0.28
178 10 0.02
179 6 0.01
180 113 0.18
181 169 0.27
182 9 0.01
183 5 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCAT
AAAACAATTGTTTCCTTTCAATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTT
CGAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTAAACAAT
Found at i:83310 original size:12 final size:11
Alignment explanation
Indices: 83253--83314 Score: 58
Period size: 12 Copynumber: 5.7 Consensus size: 11
83243 TAATTAACAA
*
83253 TAATAATAATT
1 TAATTATAATT
83264 T-ATTA-AATT
1 TAATTATAATT
*
83273 TAATAATAATT
1 TAATTATAATT
*
83284 TATAATATAA-T
1 TA-ATTATAATT
83295 TAATTATAATT
1 TAATTATAATT
83306 ATAATTATA
1 -TAATTATA
83315 TAGATAATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
9 5 0.12
10 12 0.29
11 11 0.27
12 13 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATTATAATT
Found at i:83326 original size:15 final size:14
Alignment explanation
Indices: 83273--83328 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
83263 TTATTAAATT
83273 TAATAATAATT-TA
1 TAATAATAATTATA
83286 TAAT-ATAATTAATTA
1 TAATAATAATT-A-TA
*
83301 TAATTATAATTATA
1 TAATAATAATTATA
83315 TAGATAATAATTAT
1 TA-ATAATAATTAT
83329 TATTTTAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
12 6 0.16
13 4 0.11
14 4 0.11
15 17 0.46
16 6 0.16
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (14 bp):
TAATAATAATTATA
Found at i:83628 original size:22 final size:22
Alignment explanation
Indices: 83602--83646 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
83592 TATGAGTGGA
* **
83602 AATATGGATTATCTATATTTAT
1 AATATAGATTATAAATATTTAT
*
83624 AATATAGTTTATAAATATTTAT
1 AATATAGATTATAAATATTTAT
83646 A
1 A
83647 TTTTGATAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (22 bp):
AATATAGATTATAAATATTTAT
Found at i:83875 original size:13 final size:13
Alignment explanation
Indices: 83770--83838 Score: 51
Period size: 11 Copynumber: 5.6 Consensus size: 13
83760 TTAGTAAATA
83770 AATATATA-TAAT
1 AATATATATTAAT
*
83782 AGATATAT-TTAGT
1 A-ATATATATTAAT
*
83795 AA-ATAT-TTAGT
1 AATATATATTAAT
83806 AAT-TATATTAA-
1 AATATATATTAAT
*
83817 AATATATACTTATT
1 AATATATA-TTAAT
83831 AATATATA
1 AATATATA
83839 GTGAAAATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
11 17 0.36
12 9 0.19
13 13 0.28
14 8 0.17
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (13 bp):
AATATATATTAAT
Found at i:83881 original size:19 final size:19
Alignment explanation
Indices: 83857--83894 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83847 GTAATAGTAT
*
83857 TAATTAATAATATATATTA
1 TAATTAATAATATAAATTA
*
83876 TAATTAATATTATAAATTA
1 TAATTAATAATATAAATTA
83895 ACTATATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAATAATATAAATTA
Found at i:83884 original size:32 final size:34
Alignment explanation
Indices: 83830--83895 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 34
83820 ATATACTTAT
*
83830 TAATATATAGTGAAAATGTAATAGTATTAATTAA
1 TAATATATAGTGAAAATGTAATAGTATAAATTAA
* * *
83864 TAATATATA-TTATAAT-TAATATTATAAATTAA
1 TAATATATAGTGAAAATGTAATAGTATAAATTAA
83896 CTATATTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 14 0.50
33 5 0.18
34 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (34 bp):
TAATATATAGTGAAAATGTAATAGTATAAATTAA
Found at i:84071 original size:17 final size:17
Alignment explanation
Indices: 84022--84076 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
84012 TTTCGATAAT
84022 TATAATTATA-ATTAGTA
1 TATAATTATATATTA-TA
* *
84039 TAATAAATAATTTATTATA
1 T-AT-AATTATATATTATA
84058 TATAATTATATATTATA
1 TATAATTATATATTATA
84075 TA
1 TA
84077 ATAAATGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 15 0.48
18 4 0.13
19 8 0.26
20 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TATAATTATATATTATA
Found at i:85002 original size:178 final size:179
Alignment explanation
Indices: 84653--85162 Score: 672
Period size: 178 Copynumber: 2.8 Consensus size: 179
84643 TTAATTTAAA
* * **
84653 TTATTTTTTAAATCTTTTACTTATT-AATTGTTGGAATATTATTAAATTAATATTATTTTATTTT
1 TTATTTTTTAAAT-TTTTACTTATTAAATT-TTGGAATATTAATAAATTTA-ATTATTTTATTCA
* * * * * *
84717 GAATAAGCTTATATA-GACGAAAACAATTGGTTCATTGCA-AAATAAAAAGATCATACCTATTTG
63 AAATAAGCTTGTA-AGGACAAAAACAATTGGTTTA-T-CACAAA-AAAAAGGTCATAACTATTTG
* * * * *
84780 AAATAGATAATTGTTCAAATAGTCA-GATCTATTTGAATATGTTCACAAAACAAAT
124 AAATAGATAATTGTTCAAATAGTCATAATCAATTCGAACATGTTCAAAAAACAAAT
84835 TTATTTTTTAAATTTTTACTTATTAAATTTTGGAATATTAATAAATTTAATTATTTTATTCAAAA
1 TTATTTTTTAAATTTTTACTTATTAAATTTTGGAATATTAATAAATTTAATTATTTTATTCAAAA
*
84900 TAAGCTTGTAAGGACAAAAACAATTGGTTTATCACAAAAAAAAGGTCATAACTATTTGAAATAAA
66 TAAGCTTGTAAGGACAAAAACAATTGGTTTATCACAAAAAAAAGGTCATAACTATTTGAAATAGA
84965 TAATTGTTCAAATAGTCATAAT-AATTCGAACATGTTCAAAAAACAAAT
131 TAATTGTTCAAATAGTCATAATCAATTCGAACATGTTCAAAAAACAAAT
* * *
85013 TTATTTTTTAAATTTTTGCTTATTAAATTTTGGAATATTAATTAATTTAATTATTTTATTCGAAA
1 TTATTTTTTAAATTTTTACTTATTAAATTTTGGAATATTAATAAATTTAATTATTTTATTCAAAA
* * * * * *
85078 TAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTTATAA-TGATTTGAAATA
66 TAAGCTTGTAAGGACAAAAACAATTGGTTTATCACAAAA-AAAAGGTCATAACT-ATTTGAAATA
85142 GATAATTGTTCAAATAGTCAT
129 GATAATTGTTCAAATAGTCAT
85163 CGCTATTTAA
Statistics
Matches: 296, Mismatches: 26, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
178 163 0.55
179 48 0.16
180 39 0.13
181 29 0.10
182 17 0.06
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
TTATTTTTTAAATTTTTACTTATTAAATTTTGGAATATTAATAAATTTAATTATTTTATTCAAAA
TAAGCTTGTAAGGACAAAAACAATTGGTTTATCACAAAAAAAAGGTCATAACTATTTGAAATAGA
TAATTGTTCAAATAGTCATAATCAATTCGAACATGTTCAAAAAACAAAT
Found at i:85679 original size:16 final size:16
Alignment explanation
Indices: 85658--85688 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85648 ATTTAATGTT
*
85658 ATATTAATATTAATTA
1 ATATTAAGATTAATTA
85674 ATATTAAGATTAATT
1 ATATTAAGATTAATT
85689 TAGTATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATATTAAGATTAATTA
Found at i:86204 original size:16 final size:16
Alignment explanation
Indices: 86155--86218 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
86145 ATCAAAATAG
*
86155 ATTTAATATTAAATTA
1 ATTTAATAATAAATTA
* * *
86171 A-TCAATTAATATACTA
1 ATTTAA-TAATAAATTA
* *
86187 ATTTTATAATTAATTA
1 ATTTAATAATAAATTA
86203 ATTTAATAATAAATTA
1 ATTTAATAATAAATTA
86219 TTAAATTATA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 30 0.86
17 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTAATAATAAATTA
Found at i:86242 original size:34 final size:34
Alignment explanation
Indices: 86190--86268 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
86180 TATACTAATT
86190 TTATAATTAATTAATTTAATAATAAATT-ATTAAA
1 TTATAATTAATTAATTTAATAATAAATTGA-TAAA
* *
86224 TTATAATTATATT-GTTTAATATTAAATTGATAAA
1 TTATAATTA-ATTAATTTAATAATAAATTGATAAA
86258 TTATAA-TAATT
1 TTATAATTAATT
86269 TAAATACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 3 0.07
33 2 0.05
34 32 0.78
35 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (34 bp):
TTATAATTAATTAATTTAATAATAAATTGATAAA
Found at i:86564 original size:29 final size:28
Alignment explanation
Indices: 86511--86604 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
86501 TATCCAAAAA
* *
86511 TATATTAT-A-AAATATAATTTTTATAAT
1 TATATTATAATAAATATAA-ATATATAAT
86538 TATATTATAATAAATATAACATATATAA-
1 TATATTATAATAAATATAA-ATATATAAT
*
86566 -A-CTTATAATAAATAT-AATATATAAT
1 TATATTATAATAAATATAAATATATAAT
86591 ATAATAATTATAAT
1 -T-AT-ATTATAAT
86605 GGTTTAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
24 8 0.15
25 1 0.02
26 13 0.24
27 9 0.17
28 2 0.04
29 14 0.26
30 7 0.13
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
TATATTATAATAAATATAAATATATAAT
Found at i:87110 original size:25 final size:27
Alignment explanation
Indices: 87076--87125 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
87066 ATTAACTAAT
*
87076 AATAATTAATATATTAT-ACAATTAAA
1 AATAATTAATAAATTATGACAATTAAA
87102 AATAA-TAATAAATTATGACAATTA
1 AATAATTAATAAATTATGACAATTA
87126 TTATATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (27 bp):
AATAATTAATAAATTATGACAATTAAA
Found at i:87199 original size:23 final size:24
Alignment explanation
Indices: 87151--87207 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
87141 AATTAATATA
*
87151 TAATATTAAATTAGATTATACTAT
1 TAATAATAAATTAGATTATACTAT
*
87175 TAATAATACATTA-ATTATA-TAAT
1 TAATAATAAATTAGATTATACT-AT
*
87198 TAATACTAAA
1 TAATAATAAA
87208 CAAGATTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.04
23 16 0.57
24 11 0.39
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (24 bp):
TAATAATAAATTAGATTATACTAT
Found at i:87851 original size:15 final size:15
Alignment explanation
Indices: 87833--87878 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
87823 TATTTAATTA
87833 ATTAATATTATTCAT
1 ATTAATATTATTCAT
87848 ATT-ATA-TA-T--T
1 ATTAATATTATTCAT
87858 -TTAATATTATTCAT
1 ATTAATATTATTCAT
87872 ATTAATA
1 ATTAATA
87879 AAATATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
9 2 0.08
10 4 0.16
11 2 0.08
12 2 0.08
13 2 0.08
14 4 0.16
15 9 0.36
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTAATATTATTCAT
Done.