Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 382840
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Warning! 2000 characters in sequence are not A, C, G, or T
File 3 of 8
Found at i:88893 original size:242 final size:247
Alignment explanation
Indices: 88479--88928 Score: 558
Period size: 242 Copynumber: 1.8 Consensus size: 247
88469 TCATGTTAGC
* *
88479 TTATTTGAAATAAAATAATACTAATTTATTAATATTGTAAAAATTATAAAGTAAGAGAATTAAAA
1 TTATTTAAAATAAAATAATACTAATTTATTAATATTGTAAAAATTATAAAGTAAAAGAATTAAAA
* * *
88544 AAATAAATCTGTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAATAATTATCTATTTCAAA
66 AAATAAATCTCTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAACAATTATCTATCTCAAA
* *
88609 ACATTACAACCTTTTGTTTTATCATAAAACAATTGGTTCTATTCATTCAAGCTTATTTCA-AATA
131 ACATTACAACCTTTTGTTTTATCATAAAACAATTAGTTCTATTCA-ACAAGCTTATTT-AGAATA
88673 AAATAATA-TAAATTTATTAATGTTTCAAAACCAGTTGTTTCTATTCATACAAA
194 AAATAATACTAAATTTATTAATGTTTCAAAACCAGTTGTTTCTATTCATACAAA
* * * * *
88726 TTATTTAAAATAAAATAATACTATTTTATTACTATTTTGAAAA-T-T-AA-TAAAAG-ATTTAAA
1 TTATTTAAAATAAAATAATACTAATTTATTAATATTGTAAAAATTATAAAGTAAAAGAATTAAAA
* * * *
88786 AACTAAATCTCTTTATCGAACCAGTTCAAATAGTTATGACTAT-TTGAACAATTATCTATCTCCA
66 AAATAAATCTCTTTATCAAACAAGTTCAAATAGTTATGACTATCTT-AACAATTATCTATCTCAA
*** ** * * * * *
88850 ATTGTTATGA-TTTTTGTTTTGTCCTAAAACATTTAATTTCTATTCAACAAGCTTATTTAGAATA
130 AACATTACAACCTTTTGTTTTATCATAAAACAATT-AGTTCTATTCAACAAGCTTATTTAGAATA
*
88914 AAATATTACTAAATT
194 AAATAATACTAAATT
88929 AACAATATTC
Statistics
Matches: 172, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
240 1 0.01
241 44 0.26
242 80 0.47
243 5 0.03
244 2 0.01
245 1 0.01
246 1 0.01
247 38 0.22
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (247 bp):
TTATTTAAAATAAAATAATACTAATTTATTAATATTGTAAAAATTATAAAGTAAAAGAATTAAAA
AAATAAATCTCTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAACAATTATCTATCTCAAA
ACATTACAACCTTTTGTTTTATCATAAAACAATTAGTTCTATTCAACAAGCTTATTTAGAATAAA
ATAATACTAAATTTATTAATGTTTCAAAACCAGTTGTTTCTATTCATACAAA
Found at i:90081 original size:30 final size:31
Alignment explanation
Indices: 90037--90096 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
90027 TTATAACAAT
90037 TAAATTTAATAAATTACTTA-TTAAACTTTAA
1 TAAATTTAATAAATTACTTATTTAAA-TTTAA
* *
90068 TAAA-TTAGTAAATTATTTATTTAAATTTA
1 TAAATTTAATAAATTACTTATTTAAATTTA
90097 TCCAAGCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (31 bp):
TAAATTTAATAAATTACTTATTTAAATTTAA
Found at i:90561 original size:16 final size:18
Alignment explanation
Indices: 90526--90572 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 18
90516 AATTAATAGT
*
90526 TATTAAATTATAGTAATA
1 TATTAAATTATAGAAATA
90544 TATT-AATTATA-AAATA
1 TATTAAATTATAGAAATA
90560 TATACTAAATTAT
1 TAT--TAAATTAT
90573 TATTAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.28
17 7 0.28
18 5 0.20
19 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TATTAAATTATAGAAATA
Found at i:90580 original size:22 final size:24
Alignment explanation
Indices: 90525--90581 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
90515 TAATTAATAG
*
90525 TTATTAAATTATAGTAATATATTAA
1 TTATTAAA-TATAGTAATAAATTAA
* *
90550 TTATAAAATATA-TACTAAATT-A
1 TTATTAAATATAGTAATAAATTAA
90572 TTATTAAATA
1 TTATTAAATA
90582 AAATAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 10 0.36
23 7 0.25
24 4 0.14
25 7 0.25
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
TTATTAAATATAGTAATAAATTAA
Found at i:90724 original size:22 final size:19
Alignment explanation
Indices: 90699--90768 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 19
90689 CGATTAATCC
90699 TTAAATATTAATCTAATTCATT
1 TTAAATATTAA-C-AATT-ATT
*
90721 TTAAATTAATAACAATTATT
1 TTAAA-TATTAACAATTATT
90741 TTAAATATTAACAATTATT
1 TTAAATATTAACAATTATT
90760 ATTAAATAT
1 -TTAAATAT
90769 AATAATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.30
20 16 0.36
21 4 0.09
22 6 0.14
23 5 0.11
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAAATATTAACAATTATT
Found at i:90741 original size:20 final size:20
Alignment explanation
Indices: 90713--90773 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 20
90703 ATATTAATCT
90713 AATTCATTTTAAATTAATAAC
1 AATT-ATTTTAAATTAATAAC
*
90734 AATTATTTTAAA-TATTAAC
1 AATTATTTTAAATTAATAAC
90753 AATTATTATTAAATATAATAA
1 AATTATT-TTAAAT-TAATAA
90774 TTAAATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 13 0.37
20 13 0.37
21 4 0.11
22 5 0.14
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTATTTTAAATTAATAAC
Found at i:90926 original size:15 final size:15
Alignment explanation
Indices: 90906--90997 Score: 80
Period size: 15 Copynumber: 5.9 Consensus size: 15
90896 CTTTATTAAC
90906 AATATATAAATAATT
1 AATATATAAATAATT
*
90921 AATATAGTAAATATTAT
1 AATATA-TAAATAAT-T
*
90938 AATAT-TATATAATT
1 AATATATAAATAATT
90952 -ATAATATAAATAATT
1 AAT-ATATAAATAATT
90967 AATATTATTAATATAATT
1 AATA-TA-TAA-ATAATT
**
90985 GTTATATAAATAA
1 AATATATAAATAA
90998 ATGACTATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
13 2 0.03
14 3 0.05
15 25 0.40
16 14 0.22
17 11 0.17
18 8 0.13
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
AATATATAAATAATT
Found at i:90969 original size:13 final size:12
Alignment explanation
Indices: 90909--90983 Score: 54
Period size: 12 Copynumber: 6.6 Consensus size: 12
90899 TATTAACAAT
90909 ATATAAATAATTA
1 ATAT-AATAATTA
* *
90922 ATATAGTAAATA
1 ATATAATAATTA
*
90934 TTATAAT-ATT-
1 ATATAATAATTA
*
90944 ATATAATTA-TA
1 ATATAATAATTA
90955 ATATAAATAATTA
1 ATAT-AATAATTA
90968 ATAT--T-ATTA
1 ATATAATAATTA
90977 ATATAAT
1 ATATAAT
90984 TGTTATATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
9 8 0.16
10 8 0.16
11 8 0.16
12 15 0.31
13 10 0.20
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (12 bp):
ATATAATAATTA
Found at i:90978 original size:22 final size:22
Alignment explanation
Indices: 90909--90982 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
90899 TATTAACAAT
*
90909 ATATAAATAATTAATA-TAGTAA
1 ATATAAATAATTAATATTA-TTA
90931 ATATTATAAT-ATTATATAATTA-TA
1 ATA-TA-AATAATTA-AT-ATTATTA
90955 ATATAAATAATTAATATTATTA
1 ATATAAATAATTAATATTATTA
90977 ATATAA
1 ATATAA
90983 TTGTTATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
21 4 0.09
22 16 0.36
23 12 0.27
24 9 0.20
25 1 0.02
26 2 0.05
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (22 bp):
ATATAAATAATTAATATTATTA
Found at i:90992 original size:33 final size:31
Alignment explanation
Indices: 90906--90997 Score: 96
Period size: 33 Copynumber: 2.9 Consensus size: 31
90896 CTTTATTAAC
* *
90906 AATATATAAATAATTAATATAGTAAAT-ATTAT
1 AATAT-TATATAATTATTATA-TAAATAATTAT
*
90938 AATATTATATAATTATAATATAAATAATTAAT
1 AATATTATATAATTATTATATAAATAATT-AT
* *
90970 ATTATTAATATAATTGTTATATAAATAA
1 AATATT-ATATAATTATTATATAAATAA
90998 ATGACTATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
30 5 0.10
31 15 0.29
32 12 0.24
33 19 0.37
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (31 bp):
AATATTATATAATTATTATATAAATAATTAT
Found at i:92807 original size:25 final size:25
Alignment explanation
Indices: 92772--92827 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
92762 ATTAAATAAC
*
92772 AATTATTATTATCA-TTAAATTCA-TT
1 AATTATAATTAT-ATTTAAATT-ATTT
92797 AATTATAATTATATTTAAATTATTT
1 AATTATAATTATATTTAAATTATTT
92822 AATTAT
1 AATTAT
92828 TTAAATAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
AATTATAATTATATTTAAATTATTT
Found at i:93170 original size:13 final size:13
Alignment explanation
Indices: 93152--93176 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93142 TTATAAATTT
93152 AATTATATAATAA
1 AATTATATAATAA
93165 AATTATATAATA
1 AATTATATAATA
93177 TTAATTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTATATAATAA
Found at i:93520 original size:17 final size:17
Alignment explanation
Indices: 93498--93539 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 17
93488 TATAAATATA
93498 ATTATATATTAATAATT
1 ATTATATATTAATAATT
93515 A-T-TATATT-ATAATT
1 ATTATATATTAATAATT
*
93529 ATTATAAATTA
1 ATTATATATTA
93540 TATTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
14 7 0.33
15 7 0.33
16 6 0.29
17 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATATATTAATAATT
Found at i:93540 original size:50 final size:47
Alignment explanation
Indices: 93472--93614 Score: 139
Period size: 50 Copynumber: 2.9 Consensus size: 47
93462 TAGATACTAT
*
93472 TTATAA-TATTACCAATTATAAATATAATTATATATTAATAATTATTATA
1 TTATAATTATTA-AAATTAT-AATATAATTATATATTAATAATTATTA-A
* *
93521 TTATAATTATTATAAATTATATTA-AATTAAATATTCAAATAATATATTAA
1 TTATAATTATTA-AAATTATAATATAATTATATATT--AATAAT-TATTAA
* *
93571 CTATAATTATTAATAA-TATAATATAATTATAATATTATTAATTA
1 TTATAATTATTAA-AATTATAATATAATTAT-ATATTAATAATTA
93615 ATAACAAATA
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
48 12 0.15
49 21 0.27
50 36 0.46
51 10 0.13
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (47 bp):
TTATAATTATTAAAATTATAATATAATTATATATTAATAATTATTAA
Found at i:93589 original size:24 final size:24
Alignment explanation
Indices: 93489--93612 Score: 95
Period size: 24 Copynumber: 5.2 Consensus size: 24
93479 ATTACCAATT
93489 ATAA-ATA-TAATTAT-A-TATTA
1 ATAATATATTAATTATAATTATTA
93509 ATAAT-TATTATATTATAATTATT-
1 ATAATATATTA-ATTATAATTATTA
93532 ATAAATTATATTAAATTA-AA-TATTCAA
1 AT-AA-TATATT-AATTATAATTATT--A
*
93559 ATAATATATTAACTATAATTATTA
1 ATAATATATTAATTATAATTATTA
93583 ATAATATAATATAATTATAA-TATTA
1 ATAATAT-AT-TAATTATAATTATTA
*
93608 TTAAT
1 ATAAT
93613 TAATAACAAA
Statistics
Matches: 85, Mismatches: 3, Indels: 27
0.74 0.03 0.23
Matches are distributed among these distances:
20 6 0.07
21 2 0.02
22 5 0.06
23 3 0.04
24 22 0.26
25 22 0.26
26 22 0.26
27 3 0.04
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
ATAATATATTAATTATAATTATTA
Found at i:93612 original size:20 final size:20
Alignment explanation
Indices: 93486--93712 Score: 82
Period size: 20 Copynumber: 11.8 Consensus size: 20
93476 AATATTACCA
*
93486 ATTATAAATATAATTAT-AT
1 ATTATTAATATAATTATAAT
* *
93505 ATTAATAAT-T-ATTATATT
1 ATTATTAATATAATTATAAT
* * *
93523 ATAATTATTATAAATTATATT
1 ATTATTAATAT-AATTATAAT
*
93544 A-AATTAA-AT-ATTCA-AAT
1 ATTATTAATATAATT-ATAAT
93561 AATATATTAACTATAATTATTAAT
1 -AT-TATTAA-TATAATTA-TAAT
*
93585 AATA-TAATATAATTATAAT
1 ATTATTAATATAATTATAAT
* *
93604 ATTATTAAT-TAATAACAAAT
1 ATTATTAATATAATTA-TAAT
*
93624 ATTATTTAA-AT-ATTTTAAT
1 ATTA-TTAATATAATTATAAT
* *
93643 A--A-TAATATCATAATAAT
1 ATTATTAATATAATTATAAT
93660 A--A-TAAT-TGAAATTATAAT
1 ATTATTAATAT--AATTATAAT
*
93678 ATGTATTTATA-AATTATAAT
1 AT-TATTAATATAATTATAAT
93698 A-TATTAATA-AATTAT
1 ATTATTAATATAATTAT
93713 TTTACTTACT
Statistics
Matches: 160, Mismatches: 22, Indels: 53
0.68 0.09 0.23
Matches are distributed among these distances:
15 3 0.02
16 3 0.02
17 23 0.14
18 31 0.19
19 26 0.16
20 41 0.26
21 18 0.11
22 8 0.05
23 4 0.03
24 3 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (20 bp):
ATTATTAATATAATTATAAT
Found at i:93765 original size:17 final size:18
Alignment explanation
Indices: 93715--93766 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 18
93705 TAAATTATTT
93715 TACTTACTATTAATAAATAG
1 TACTTA-TATTAA-AAATAG
93735 TA-TTATA-TATAAAATA-
1 TACTTATATTA-AAAATAG
93751 TACTTATATTAAAAAT
1 TACTTATATTAAAAAT
93767 TAAACTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.07
17 17 0.59
18 5 0.17
19 3 0.10
20 2 0.07
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (18 bp):
TACTTATATTAAAAATAG
Found at i:93801 original size:23 final size:24
Alignment explanation
Indices: 93754--93811 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
93744 TAAAATATAC
*
93754 TTATAT-TAA-AAATTAAACTATT
1 TTATATATAATAAATAAAACTATT
93776 TTATATATAATAAATAAAACTA-T
1 TTATATATAATAAATAAAACTATT
*
93799 TTATATATTATAA
1 TTATATATAATAA
93812 GATTATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 6 0.19
23 16 0.50
24 10 0.31
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
TTATATATAATAAATAAAACTATT
Found at i:94636 original size:14 final size:13
Alignment explanation
Indices: 94613--94657 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
94603 TTATAAAAAT
*
94613 ATATTTATTATTA
1 ATATTTATTATAA
94626 ATATTTGATTATAA
1 ATATTT-ATTATAA
*
94640 ATATTTATAATAA
1 ATATTTATTATAA
*
94653 TTATT
1 ATATT
94658 AATAATAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:94669 original size:50 final size:49
Alignment explanation
Indices: 94560--94670 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 49
94550 ATTATAATAT
* * *
94560 TAATAATTAATTAATAATATTTATTAAATATAAGTTATATTAGTTATAA
1 TAATAATTTATTAATAATATTTATTAAATATAAGTTATAATAATTATAA
* * *
94609 AAATATATTTATTATTAATATTTGATTATAA-AT-ATTTATAATAATTATTAA
1 TAATA-ATTTATTAATAATATTT-ATTA-AATATAAGTTATAATAATTA-TAA
94660 TAATAATTTAT
1 TAATAATTTAT
94671 ATAAACAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
49 4 0.08
50 32 0.63
51 13 0.25
52 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.50
Consensus pattern (49 bp):
TAATAATTTATTAATAATATTTATTAAATATAAGTTATAATAATTATAA
Found at i:95209 original size:16 final size:17
Alignment explanation
Indices: 95173--95212 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
95163 AATTAATTAT
95173 TATAATGAATAACATGA
1 TATAATGAATAACATGA
95190 -ATAAT-AAT-ACATTGA
1 TATAATGAATAACA-TGA
95205 TATAATGA
1 TATAATGA
95213 TATTATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
14 3 0.15
15 6 0.30
16 10 0.50
17 1 0.05
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.33
Consensus pattern (17 bp):
TATAATGAATAACATGA
Found at i:95823 original size:21 final size:22
Alignment explanation
Indices: 95799--95844 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
95789 TTATTAGTTA
*
95799 TAAATCTAATTGTATTT-ATTT
1 TAAATATAATTGTATTTAATTT
* *
95820 TAAATATTATTTTATTTAATTT
1 TAAATATAATTGTATTTAATTT
95842 TAA
1 TAA
95845 TAATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TAAATATAATTGTATTTAATTT
Found at i:97691 original size:180 final size:178
Alignment explanation
Indices: 96416--97694 Score: 702
Period size: 177 Copynumber: 7.2 Consensus size: 178
96406 AACAAGATAT
* * * * * * * * * * * *
96416 TATTTCAAATTGTAATCACCTTTTGTTTGGTCATATAACAATTGTTTTATATCATACATGATTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATTTTTTTGT-TCATATAAGCTTAT
* * *
96481 TCAAAATAAAATAATAATAATTTATTAATCTTTCAA-A-AATTAATAAG----AGATTTAAAAA-
65 TCAGAATAAAATAATACTAATTTATTAAT-ATT-AAGACAATTAATAAGTAAAAGATTTAAAAAT
* * ** * * *
96539 AGAATCTATTTACCGAACCGTTCAAATATTTATGACTATTTGAACAATTCTA
128 A-AATCTGTTTACCAAATAGTTCAAATAATTATGACTATTTGAACAATTATC
* * * * * * * *
96591 TACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTCTGTTCATACAAGCTTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATT-TTTTTGTTCATATAAGCTTAT
* * * * * ** *
96656 TCAAAATAAAACAATACTAATATAATAATATTCCAA-A-AATTAATAACTAAGGGATTTCAAAAC
65 TCAGAATAAAATAATACTAATTTATTAATATT--AAGACAATTAATAAGTAAAAGATTT-AAAAA
* * * ** ** * * *
96719 TAAATTTGTTTGTCGAACCAAATCAAATAGTTAAGACTATATGAACAATTATC
127 TAAATCTGTTT-ACCAAATAGTTCAAATAATTATGACTATTTGAACAATTATC
* * * * * ***
96772 TATTTAAAATCATTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAATTC--AT-AGCTTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATTTT-TTTGTTCATATAAGCTTAT
* * * *
96834 TCAAAATAAAATAA-AATGAATTTATTAATATTTCAA-A-AAATAATACA-TAAGAGATTTAAAA
65 TCAGAATAAAATAATACT-AATTTATTAATA-TT-AAGACAATTAATA-AGTAAAAGATTT-AAA
* * ** * * * *
96895 AATAATTCTTTTTACCTAACCAGTTGAAAAAAATTAT-ATTATTTGAACAATTATA
125 AATAAATCTGTTTACC-AAATAGTT-CAAATAATTATGACTATTTGAACAATTATC
* * * *
96950 TATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACA-AATGTTTTTGTTCATATAAGTTTA
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATA-AA-AGAATTTTTTTGTTCATATAAGCTTA
* * * *
97014 TTCGGAATAAAGTAATACTAATCTATTAATATTTCAA-A-AATTAATAAGT----GATTTAGACA
64 TTCAGAATAAAATAATACTAATTTATTAATA-TT-AAGACAATTAATAAGTAAAAGATTTA-AAA
* * * * * *
97073 ATAAATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTATT
126 ATAAATCTGTTTACCAAA-TAGTTCAAATAATTATGACTATTTGAACAATTATC
* * * * ** * * * *
97127 TATTTCGAATCATTATGGCTTTTTATTTTGTTGTAAAACAATTGTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATT-TTTTTGTTCATATAAGCTTAT
* * ** * ** *
97192 T-TGCATTAAAATAATACTAATTTATTAATATTTTGACAATCAGCAAGTAAAAAACTTTAAAAAT
65 TCAG-AATAAAATAATACTAATTTATTAATATTAAGACAATTAATAAGTAAAAGA-TTTAAAAAT
* * * * * *
97256 --A--TGTTTACCACACTAGATCAAATAATCATGACAATTTAAATAATTATC
128 AAATCTGTTTACCA-AATAGTTCAAATAATTATGACTATTTGAACAATTATC
* * * * * * *
97304 TATATCAAATCGTTATGACCTTTGGATTTGTCACAAAAGAGTTGTTTTAGTTCATATAAGCTTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATT-TTTTTGTTCATATAAGCTTAT
* * * *
97369 TCAAAATAAAATAATACTAATTTATTAATA--ACACAAAATTTAATAA-TAAGGAGATTTAAAAA
65 TCAGAATAAAATAATACTAATTTATTAATATTA-AGACAA-TTAATAAGTAA-AAGATTT-AAAA
* * * * * * * * * * *
97431 ATGACTTTGTTTACTAAACAAATTTAAATAATTAGGATTGTTTGAATAATTATC
126 ATAAATCTGTTTACCAAA-TAGTTCAAATAATTATGACTATTTGAACAATTATC
* * * * * * *
97485 TATTTGAAATAGCTATAAC-CTTTGTTTTGTAATAAAAGAATTTTTTCTGTTCATCTAAGCTTAT
1 TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATTTTTT-TGTTCATATAAGCTTA-
*
97549 TTC-GAATAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAATA
64 TTCAGAATAAAATAATACTAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAATA
* * * * *
97613 AATCTGTTTACCAAATAAGTTCTAATCATTATGGCTATTTGAGCAATTATT
129 AATCTGTTTACCAAAT-AGTTCAAATAATTATGACTATTTGAACAATTATC
*
97664 TATTTCAACAT-GTTATGATTTTTTGTTTTGT
1 TATTTCAA-ATCGTTATGACTTTTTGTTTTGT
97695 TATGTTAATA
Statistics
Matches: 842, Mismatches: 208, Indels: 103
0.73 0.18 0.09
Matches are distributed among these distances:
174 2 0.00
175 86 0.10
176 33 0.04
177 237 0.28
178 119 0.14
179 81 0.10
180 99 0.12
181 178 0.21
182 7 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (178 bp):
TATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAAAGAATTTTTTTGTTCATATAAGCTTATT
CAGAATAAAATAATACTAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAA
TCTGTTTACCAAATAGTTCAAATAATTATGACTATTTGAACAATTATC
Found at i:98085 original size:19 final size:19
Alignment explanation
Indices: 98063--98115 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
98053 TTATAATAAA
*
98063 ATATAATATAATAATTATT
1 ATATAATATAATAAATATT
*
98082 ATATTAT-TCAATAAATATT
1 ATATAATAT-AATAAATATT
98101 ATATTAATATTAATA
1 ATA-TAATA-TAATA
98116 TAATTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 1 0.04
19 18 0.67
20 3 0.11
21 4 0.15
22 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATAATATAATAAATATT
Found at i:98234 original size:16 final size:16
Alignment explanation
Indices: 98215--98248 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
98205 ATCTCTATTA
98215 TTATATTAATT-TAAAT
1 TTATATT-ATTATAAAT
98231 TTATATTATTATAAAT
1 TTATATTATTATAAAT
98247 TT
1 TT
98249 TTTAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATTATTATAAAT
Found at i:98269 original size:16 final size:16
Alignment explanation
Indices: 98250--98301 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
98240 TATAAATTTT
98250 TTAATATTTTAATTAA
1 TTAATATTTTAATTAA
98266 TTAATATATATT-ATTAA
1 TTAATAT-T-TTAATTAA
* **
98283 TTAAAATAATAATTAA
1 TTAATATTTTAATTAA
98299 TTA
1 TTA
98302 TAACATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.03
16 15 0.50
17 12 0.40
18 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAATATTTTAATTAA
Found at i:98283 original size:17 final size:16
Alignment explanation
Indices: 98259--98301 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
98249 TTTAATATTT
*
98259 TAATTAATTAATATATA
1 TAATTAATTAAAATA-A
*
98276 TTATTAATTAAAATAA
1 TAATTAATTAAAATAA
98292 TAATTAATTA
1 TAATTAATTA
98302 TAACATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTAATTAAAATAA
Found at i:98790 original size:171 final size:170
Alignment explanation
Indices: 98521--98827 Score: 381
Period size: 171 Copynumber: 1.8 Consensus size: 170
98511 TCAAATAGTT
* * * *
98521 ATGACTATTTGAGCAATTATTTATTTCAAATCTTTATGACATTTTTTTCTGTTATAAAACAATTG
1 ATGACTATTTGAACAATTATCTATTTCAAATCTTTATGACATTTTTTTCTGTCATAAAACAATTA
* * * * *
98586 TTACTATTCATACAAGCTTATTTGGATTAAAATAATACTAAT-TTATTAATATTTTGACAATTAA
66 TTACTATTCATACAAGCTTATTAGAAATAAAATAATAC-AATGTTATTAATATTATGAAAATTAA
98650 TAAGTTAAAAATTTTAGAAATAAATATGTTTACCTGACAGTC
130 TAA-TTAAAAATTTTAGAAATAAATATGTTTACCTGACAGTC
* * *
98692 ATGACTATTTGAATAGTTATCTATTTCAAAT-TGTTATGACCTTTTGTTT-TGTCATAAAA-AAC
1 ATGACTATTTGAACAATTATCTATTTCAAATCT-TTATGACATTTT-TTTCTGTCATAAAACAA-
* * * *
98754 TTATT-TTAGTTCATATAAGGTTATTAGAAATAAAATAATACCATGTTATTAATATTATGAAAAT
63 TTATTACTA-TTCATACAAGCTTATTAGAAATAAAATAATACAATGTTATTAATATTATGAAAAT
98818 TAATAATTAA
127 TAATAATTAA
98828 GAGATTTAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
170 11 0.10
171 101 0.88
172 3 0.03
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (170 bp):
ATGACTATTTGAACAATTATCTATTTCAAATCTTTATGACATTTTTTTCTGTCATAAAACAATTA
TTACTATTCATACAAGCTTATTAGAAATAAAATAATACAATGTTATTAATATTATGAAAATTAAT
AATTAAAAATTTTAGAAATAAATATGTTTACCTGACAGTC
Found at i:99002 original size:181 final size:179
Alignment explanation
Indices: 98692--99573 Score: 789
Period size: 181 Copynumber: 4.9 Consensus size: 179
98682 CCTGACAGTC
* * *
98692 ATGACTATTTGAATAGTTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAA-AACTT
1 ATGACTATTTGAATAATTATCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAA-TT
* * * * * * *
98756 ATTTTAGTTCATATAAGGTTATTAGAAATAAAATAATAC-CATGTTATTAATATTATGAAAATTA
65 GTTTCAATTCATATAAGCTTATT-CAAATAAAATAATACAAAT-TTATTAATATTA-AAAAATTA
* * * * * *
98820 ATAATTAAGAGATTTAAAAAATGAATCCATTTACCGAACAAGTTTAAATAATT
127 ATAAGTAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAATT
* * ** * * * **
98873 ATGACCATTTGAACAATTAT-TGATTTGGAATTGTTATAACCTTTTGGTTTGTCATATAATGATT
1 ATGACTATTTGAATAATTATCT-ATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATT
***
98937 -TTATTTGTTCATATAAGCTTACTTCAAATAAAATAATACAAATTTATTAATATTAAAATAATTA
65 GTT-TCAATTCATATAAGCTTA-TTCAAATAAAATAATACAAATTTATTAATATTAAAA-AATTA
* * * **
99001 ATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACAAATTGAAATCGTT
127 ATAAGTAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAATT
* * * * *
99054 ATGACTATCTGAATAATTATTTATTTCAAATTCTTATGA-CTTTT-TTTTGTCATAAAATAATTG
1 ATGACTATTTGAATAATTATCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATTG
* * * * * * *** * *
99117 TTTCCATCCGTACAAGCTTATTCGGATTAAAATAATATTGATTTATTAATAATTCAACAATTAAT
66 TTTCAATTCATATAAGCTTATTC-AAATAAAATAATACAAATTTATTAAT-ATTAAAAAATTAAT
* * * *
99182 AAGTAAAAGATTTAAAAAAAAAAT-AAGTTTACCAAACAAGTTCAAATAGTC
129 AAGTAAAAGATTTAAAAAATAAATCTA-TTTACCAAACAAGTTCAAATAATT
* * * * * *
99233 ATGACTATTTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAACTG
1 ATGACTATTTGAATAATTATCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATTG
* * * * * *
99298 TTTCAATTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAA
66 TTTCAATTCATATAAGCTTA-TTCAAATAAAATAATACAAATTTATTAATATT-AAAAAATTAAT
* * * *
99363 AAGTAAGAGAATTAAAAAAATAAATCTATTTATCGAACAAGTTCAAA-AAGTT
129 AAGTAAAAG-ATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAA-TT
** *
99415 ATGACTATCTT-AATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATT
1 ATGACTAT-TTGAATAATTATCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATT
* * * * *
99479 GGTTCTATTCAT-TCAAGCTTATTTCAAATAAAATAATATAAATTTATTAATGTTCCAAAAATTA
65 GTTTCAATTCATAT-AAGCTTA-TTCAAATAAAATAATACAAATTTATTAATATT-AAAAAATTA
* * *
99543 ATAA-TTAAATATTT-AAAAATAAATTTATTTA
127 ATAAGTAAAAGATTTAAAAAATAAATCTATTTA
99574 AAAATTAATG
Statistics
Matches: 575, Mismatches: 106, Indels: 42
0.80 0.15 0.06
Matches are distributed among these distances:
178 4 0.01
179 145 0.25
180 27 0.05
181 245 0.43
182 151 0.26
183 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
ATGACTATTTGAATAATTATCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATTG
TTTCAATTCATATAAGCTTATTCAAATAAAATAATACAAATTTATTAATATTAAAAAATTAATAA
GTAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAATT
Found at i:99222 original size:360 final size:360
Alignment explanation
Indices: 98692--99561 Score: 891
Period size: 360 Copynumber: 2.4 Consensus size: 360
98682 CCTGACAGTC
* * * *
98692 ATGACTATTTGAATAGTTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAAAACTTA
1 ATGACTATCTGAATAATTATCTATTTCAAATTCTTATGACCTTTTGTTTTGTCATAAAAAA-TTG
* * * ** * *
98757 TTT-TAGTTCATATAAGGTTATTAGAAATAAAATAATA-CCATGTTATTAATATTATGAAAATTA
65 TTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATATAAAT-TTATTAATAAT-TCAAAATTA
* ** * * * *
98820 ATAATTAAGAGATTTAAAAAATGAATCCATTTACCGAACAAGTTTAAATAATTATGACCATTTGA
127 ATAA-TAAAAGATTTAAAAAAAAAATCAATTTACCAAACAAGTTCAAATAATCATGACCATTTGA
* ** ** * * * ** * ***
98885 ACAATTAT-TGATTTGGAATTGTTATAACCTTTTGGTTTGTCATATAATGA-TTTTATTTGTTCA
191 ACAATTATCT-ACTTCAAATCATTATAACATTTTGGTTTGTAATAAAACAACTGTT-TCAATTCA
*
98948 TATAAGCTTACTTCAAATAAAATAATACAAATTTATTAATATT-AAAATAATTAATAAGTAAAAG
254 TATAAGCTTACTTCAAATAAAATAATACAAATTTATTAATATTCAAAA-AATTAAAAAGTAAAAG
* * **
99012 -ATTTAAAAAATAAATCTATTTATCAAACAAATTGAAATCGTT
318 AATTAAAAAAATAAATCTATTTATCAAACAAATTCAAAAAGTT
*
99054 ATGACTATCTGAATAATTATTTATTTCAAATTCTTATGA-CTTTT-TTTTGTCATAAAATAATTG
1 ATGACTATCTGAATAATTATCTATTTCAAATTCTTATGACCTTTTGTTTTGTCATAAAA-AATTG
* * * * * **
99117 TTTCCATCCGTACAAGCTTATTCGGATTAAAATAATATTGATTTATTAATAATTCAACAATTAAT
65 TTTCTATTCATACAAGCTTATTCGAAATAAAATAATATAAATTTATTAATAATTCAA-AATTAAT
* *
99182 AAGTAAAAGATTTAAAAAAAAAAT-AAGTTTACCAAACAAGTTCAAATAGTCATGACTATTTGAA
129 AA-TAAAAGATTTAAAAAAAAAATCAA-TTTACCAAACAAGTTCAAATAATCATGACCATTTGAA
* * * *
99246 TAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAACTGTTTCAATTCATGT
192 CAATTATCTACTTCAAATCATTATAACATTTTGGTTTGTAATAAAACAACTGTTTCAATTCATAT
* * * * * *
99311 TAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAAAAGTAAGAGAATT
257 AAGCTTACTTCAAATAAAATAATACAAATTTATTAATATTCAAAAAATTAAAAAGTAAAAGAATT
* *
99376 AAAAAAATAAATCTATTTATCGAACAAGTTCAAAAAGTT
322 AAAAAAATAAATCTATTTATCAAACAAATTCAAAAAGTT
* * **
99415 ATGACTATCTTAATAATTATCTATTTCAAA-ACATTACAACCTTTTGTTTTGTCATAAAACAATT
1 ATGACTATCTGAATAATTATCTATTTCAAATTC-TTATGACCTTTTGTTTTGTCATAAAA-AATT
* * *
99479 GGTTCTATTCATTCAAGCTTATTTC-AAATAAAATAATATAAATTTATTAAT-GTTCCAAAAATT
64 GTTTCTATTCATACAAGCTTA-TTCGAAATAAAATAATATAAATTTATTAATAATT-C-AAAATT
* *
99542 AATAATTAAATATTTAAAAA
126 AATAATAAAAGATTTAAAAA
99562 TAAATTTATT
Statistics
Matches: 417, Mismatches: 76, Indels: 30
0.80 0.15 0.06
Matches are distributed among these distances:
359 4 0.01
360 203 0.49
361 85 0.20
362 55 0.13
363 65 0.16
364 5 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (360 bp):
ATGACTATCTGAATAATTATCTATTTCAAATTCTTATGACCTTTTGTTTTGTCATAAAAAATTGT
TTCTATTCATACAAGCTTATTCGAAATAAAATAATATAAATTTATTAATAATTCAAAATTAATAA
TAAAAGATTTAAAAAAAAAATCAATTTACCAAACAAGTTCAAATAATCATGACCATTTGAACAAT
TATCTACTTCAAATCATTATAACATTTTGGTTTGTAATAAAACAACTGTTTCAATTCATATAAGC
TTACTTCAAATAAAATAATACAAATTTATTAATATTCAAAAAATTAAAAAGTAAAAGAATTAAAA
AAATAAATCTATTTATCAAACAAATTCAAAAAGTT
Found at i:99848 original size:12 final size:11
Alignment explanation
Indices: 99826--99881 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 11
99816 TAATAATTAA
*
99826 TATTATCAATT
1 TATTATTAATT
99837 TAGTTATTAATT
1 TA-TTATTAATT
99849 TATTTATT-A-T
1 TA-TTATTAATT
*
99859 TAATATTAATT
1 TATTATTAATT
99870 TATATATTAATT
1 TAT-TATTAATT
99882 AATAAAATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
9 4 0.11
10 4 0.11
11 6 0.16
12 23 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
TATTATTAATT
Found at i:99865 original size:21 final size:22
Alignment explanation
Indices: 99841--99885 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
99831 TCAATTTAGT
*
99841 TATTAATTTATTTATT-ATTAA
1 TATTAATTTATATATTAATTAA
99862 TATTAATTTATATATTAATTAA
1 TATTAATTTATATATTAATTAA
99884 TA
1 TA
99886 AAATGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTAATTTATATATTAATTAA
Found at i:99977 original size:14 final size:14
Alignment explanation
Indices: 99938--99977 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
99928 ATATAATATA
*
99938 ATTAAATTAATAAT
1 ATTAAATTATTAAT
*
99952 TTTAAATT-TTAAT
1 ATTAAATTATTAAT
99965 ATTAAATTATTAA
1 ATTAAATTATTAA
99978 AATGATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTAAATTATTAAT
Found at i:100170 original size:24 final size:25
Alignment explanation
Indices: 100109--100171 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
100099 AATAGATATA
* *
100109 ATAAAAATT-ATTAATTATTATATT
1 ATAATAATTAATTAATTATTAGATT
*
100133 TTAAATAATATAATTAATTATT-GATT
1 AT-AATAAT-TAATTAATTATTAGATT
100159 ATAATAATTAATT
1 ATAATAATTAATT
100172 TAACCTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
24 6 0.19
25 11 0.34
26 5 0.16
27 10 0.31
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
ATAATAATTAATTAATTATTAGATT
Found at i:100430 original size:26 final size:26
Alignment explanation
Indices: 100398--100463 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
100388 AATTATAGAT
100398 AATATATAATTATTATTTATATT-TA
1 AATATATAATTATTATTTATATTATA
* *
100423 AATAATATAAATACTATTTATATTAGTA
1 AAT-ATATAATTATTATTTATATTA-TA
100451 AATAT-TAATTATT
1 AATATATAATTATT
100464 TATATAAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 3 0.09
26 24 0.71
27 2 0.06
28 5 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
AATATATAATTATTATTTATATTATA
Found at i:100548 original size:20 final size:20
Alignment explanation
Indices: 100506--100545 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
100496 AATTTATTAG
100506 TAATATTAATAAATTAATAT
1 TAATATTAATAAATTAATAT
100526 TAATATTTAATTAAATTAAT
1 TAATA-TTAA-TAAATTAAT
100546 TAAAATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATTAATAAATTAATAT
Found at i:100552 original size:22 final size:21
Alignment explanation
Indices: 100507--100557 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
100497 ATTTATTAGT
*
100507 AATA-TTAATAAATTAATATT
1 AATATTTAATAAATTAATATA
100527 AATATTTAATTAAATTAAT-TAA
1 AATATTTAA-TAAATTAATAT-A
100549 AATATTTAA
1 AATATTTAA
100558 CTGATAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 18 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATTTAATAAATTAATATA
Found at i:100974 original size:13 final size:14
Alignment explanation
Indices: 100956--100998 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
100946 TAAGATATTT
100956 AATTATTAT-TTAA
1 AATTATTATATTAA
100969 AATTATTATATTAA
1 AATTATTATATTAA
* *
100983 TATTAAATATATTAA
1 AATT-ATTATATTAA
100998 A
1 A
100999 TCGTTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 9 0.36
14 7 0.28
15 9 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AATTATTATATTAA
Found at i:101172 original size:17 final size:17
Alignment explanation
Indices: 101144--101183 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
101134 CTTTGAGAAT
*
101144 TAAATAATTATACTT-A
1 TAAATAATTATAATTAA
101160 TAAATATATTATAATTAA
1 TAAATA-ATTATAATTAA
101178 TAAATA
1 TAAATA
101184 CAAGTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 8 0.38
18 7 0.33
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATAATTATAATTAA
Found at i:101842 original size:20 final size:19
Alignment explanation
Indices: 101817--101871 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
101807 AACTAATAGC
101817 ATAATAATATTAATAAGTA
1 ATAATAATATTAATAAGTA
*
101836 TATAAT-ATATTATTATAATTA
1 -ATAATAATATTA--ATAAGTA
101857 ATAATAA-ATTAATAA
1 ATAATAATATTAATAA
101872 TTGTTTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 4 0.13
19 6 0.19
20 14 0.45
21 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATAATAATATTAATAAGTA
Found at i:101869 original size:28 final size:28
Alignment explanation
Indices: 101825--101897 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
101815 GCATAATAAT
*
101825 ATTAATAAGTATA-TAATATATT-ATTATA
1 ATTAATAA-TAAATTAATA-ATTGATTATA
*
101853 ATTAATAATAAATTAATAATTGTTTATA
1 ATTAATAATAAATTAATAATTGATTATA
* *
101881 ATTATTACTAAATTAAT
1 ATTAATAATAAATTAAT
101898 TACTAATATC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 6 0.15
28 33 0.85
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (28 bp):
ATTAATAATAAATTAATAATTGATTATA
Found at i:102170 original size:24 final size:25
Alignment explanation
Indices: 102110--102190 Score: 66
Period size: 24 Copynumber: 3.4 Consensus size: 25
102100 AAGTATATAG
**
102110 TATTATT-TATTAAGTTATAATTGT
1 TATTATTATATTAAGTTATAATTAA
*
102134 TAATT-TTA-CTTAAGTTAT-ATTAA
1 T-ATTATTATATTAAGTTATAATTAA
*
102157 TATTATTATATTAA--TATGAGTTAA
1 TATTATTATATTAAGTTAT-AATTAA
102181 TATTATTATA
1 TATTATTATA
102191 AATAGTAACA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
22 6 0.13
23 7 0.15
24 30 0.65
25 3 0.07
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.54
Consensus pattern (25 bp):
TATTATTATATTAAGTTATAATTAA
Found at i:102385 original size:25 final size:25
Alignment explanation
Indices: 102357--102407 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
102347 AAATCAATTC
* *
102357 ATTAT-TATATAATTTTAATATATTA
1 ATTATATAAATAATTAT-ATATATTA
102382 ATTATATAAATAATTATATATATTA
1 ATTATATAAATAATTATATATATTA
102407 A
1 A
102408 CATTAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTATATAAATAATTATATATATTA
Found at i:102811 original size:45 final size:43
Alignment explanation
Indices: 102745--102831 Score: 102
Period size: 45 Copynumber: 2.0 Consensus size: 43
102735 TAAATGACAC
* * *
102745 AAAACTCCTCTAAGCAGAGGTTCAACAACTTTGGAAAAATAAAT
1 AAAACTCCTCTAAACAAAGGTTCAACAACTTT-AAAAAATAAAT
* **
102789 AAAAGCTCCTCTAAATAAAGGTTCAATGACTTTAAAAAATAAA
1 AAAA-CTCCTCTAAACAAAGGTTCAACAACTTTAAAAAATAAA
102832 AGGTTCTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 13 0.36
45 23 0.64
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.24
Consensus pattern (43 bp):
AAAACTCCTCTAAACAAAGGTTCAACAACTTTAAAAAATAAAT
Found at i:103199 original size:16 final size:18
Alignment explanation
Indices: 103180--103212 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
103170 CAATTTATTA
103180 TATAATT-T-ATATAATT
1 TATAATTGTCATATAATT
103196 TATAATTGTCATATAAT
1 TATAATTGTCATATAAT
103213 ATATTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (18 bp):
TATAATTGTCATATAATT
Found at i:103378 original size:13 final size:13
Alignment explanation
Indices: 103360--103384 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103350 TTTCAAGTAA
103360 CTATATAATTATT
1 CTATATAATTATT
103373 CTATATAATTAT
1 CTATATAATTAT
103385 AAAATTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
CTATATAATTATT
Found at i:103880 original size:12 final size:11
Alignment explanation
Indices: 103863--103901 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
103853 TTCAATTAAC
103863 TATATATAATAA
1 TATATATAA-AA
103875 TATATATAAATA
1 TATATATAAA-A
103887 TAATATATAAAA
1 T-ATATATAAAA
103899 TAT
1 TAT
103902 TAGCTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.12
12 13 0.52
13 9 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TATATATAAAA
Found at i:103891 original size:15 final size:14
Alignment explanation
Indices: 103871--103901 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
103861 ACTATATATA
103871 ATAATATATATAAAT
1 ATAATATATA-AAAT
103886 ATAATATATAAAAT
1 ATAATATATAAAAT
103900 AT
1 AT
103902 TAGCTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAATATATAAAAT
Found at i:104205 original size:14 final size:14
Alignment explanation
Indices: 104163--104208 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
104153 AATTATATTA
* *
104163 TATATTTTAATAAA
1 TATATTTTATTAAT
104177 TATATGTTTATTAAT
1 TATAT-TTTATTAAT
*
104192 TATATTTGATTAAT
1 TATATTTTATTAAT
104206 TAT
1 TAT
104209 CTAATAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (14 bp):
TATATTTTATTAAT
Found at i:104578 original size:22 final size:21
Alignment explanation
Indices: 104553--104602 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
104543 TTATGACAAT
*
104553 TATTATATTATATAA-TATTGTA
1 TATTATAATAT-TAATTATT-TA
104575 TATTATAATATTAATTTATTTA
1 TATTATAATATTAA-TTATTTA
104597 TATTAT
1 TATTAT
104603 TAAATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 18 0.72
23 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTATAATATTAATTATTTA
Found at i:104942 original size:18 final size:17
Alignment explanation
Indices: 104919--104952 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
104909 TTTAATAGAT
104919 AAAATTAAATTATAATTA
1 AAAATTAAATT-TAATTA
*
104937 AAAATTTAATTTAATT
1 AAAATTAAATTTAATT
104953 TATTGATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTAAATTTAATTA
Found at i:105013 original size:18 final size:18
Alignment explanation
Indices: 104966--105015 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
104956 TGATAGTTTG
* *
104966 TAATTATAATTTATATTA
1 TAATTATAATATAAATTA
104984 TAATTATTAATATAAA-TA
1 TAATTA-TAATATAAATTA
105002 TAAATTATAATATA
1 T-AATTATAATATA
105016 TTAATGATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATTATAATATAAATTA
Found at i:105536 original size:19 final size:19
Alignment explanation
Indices: 105499--105538 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
105489 TTTACAATAT
*
105499 TTATAATAAAATTATTTTA
1 TTATAATAAAATTAGTTTA
105518 TTATAATTAAAA-TAGTTTA
1 TTATAA-TAAAATTAGTTTA
105537 TT
1 TT
105539 TGTTTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATAATAAAATTAGTTTA
Found at i:105701 original size:18 final size:18
Alignment explanation
Indices: 105678--105728 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
105668 ACAATTATTA
105678 AATTAATTATTTTAATAT
1 AATTAATTATTTTAATAT
*
105696 AATTAATAATTATT-ATAT
1 AATTAATTATT-TTAATAT
* *
105714 AATTTATTAATTTAA
1 AATTAATTATTTTAA
105729 GTTATATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTAATTATTTTAATAT
Found at i:105761 original size:15 final size:15
Alignment explanation
Indices: 105673--105773 Score: 55
Period size: 15 Copynumber: 6.7 Consensus size: 15
105663 TTTATACAAT
*
105673 TATTAA-ATTAATTA
1 TATTAATATTATTTA
* * *
105687 TTTTAATATAATTAA
1 TATTAATATTATTTA
* *
105702 TAATTATTATATAATT-
1 T-ATTAATAT-TATTTA
*
105718 TATTAAT-TTAAGTTA
1 TATTAATATT-ATTTA
**
105733 TATTAATAACATTTA
1 TATTAATATTATTTA
105748 TATTAATATTATTTA
1 TATTAATATTATTTA
*
105763 TTAATAATATT
1 -TATTAATATT
105774 CTAAATAATA
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
13 1 0.02
14 9 0.14
15 35 0.56
16 16 0.25
17 2 0.03
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (15 bp):
TATTAATATTATTTA
Found at i:105809 original size:28 final size:28
Alignment explanation
Indices: 105733--105810 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
105723 ATTTAAGTTA
* *
105733 TATTAATAACATT-TATATTAATATTATT
1 TATTAATAATATTATA-AATAATATTATT
*
105761 TATTAATAATATTCTAAATAATATTA-T
1 TATTAATAATATTATAAATAATATTATT
105788 TATTAA-AATGATTATAATATAAT
1 TATTAATAAT-ATTATAA-ATAAT
105811 CATAATATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 3 0.07
27 13 0.30
28 26 0.59
29 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (28 bp):
TATTAATAATATTATAAATAATATTATT
Found at i:105819 original size:28 final size:27
Alignment explanation
Indices: 105783--105849 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
105773 TCTAAATAAT
*
105783 ATTATTATTAAA-ATGATTATAATATA
1 ATTAATATTAAATATGATTATAATATA
* *
105809 ATCATAATATTATAATTTGATTATAATTTA
1 AT--TAATATTA-AATATGATTATAATATA
105839 ATTAATATTAA
1 ATTAATATTAA
105850 CTAATAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
26 2 0.06
27 1 0.03
28 15 0.44
29 2 0.06
30 14 0.41
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (27 bp):
ATTAATATTAAATATGATTATAATATA
Found at i:105890 original size:14 final size:13
Alignment explanation
Indices: 105873--105906 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
105863 GCAATAATTG
*
105873 ATAATTAATAGATT
1 ATAATTAATAG-TA
105887 ATAATTAATAGTA
1 ATAATTAATAGTA
105900 ATAATTA
1 ATAATTA
105907 TTAAACTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (13 bp):
ATAATTAATAGTA
Found at i:106468 original size:182 final size:179
Alignment explanation
Indices: 105963--106713 Score: 720
Period size: 182 Copynumber: 4.2 Consensus size: 179
105953 TATTTTGCTT
* * * * *
105963 TGAATAAGTTTATATGAATAGAAACAACTATTTTATGACAAAAC-AAAGATCATACCAATTTGAA
1 TGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACAATTTGAA
* * * * * * **
106027 ATAGATAACTATTCAAATAGTCATATCTATTTGAAC-TGGTCTGGTAAACAGATTTAGGTTTTAA
66 ATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTC-GATAAACATATTTATTTTTTAA
* *
106091 ATC-T-CTTATTAATTTTCAAAATATTAATAGAA-TAATATTATTTTATTC
130 ATCTTACTTATTAATTTTTAGAATATTAATA-AATTAATATTATTTTATTC
* * * *
106139 TAAATAATTTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAATG-TCCTAACGATTTGA
1 TGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GATCATAACAATTTGA
* * * * *
106203 AATAGATAA-TAGTTTAAATGGACATGACTATTTGAACTTGTTTGATAAACATATTTATTATTTA
65 AATAGATAATTA-TTTAAATAGTCATAACTATTTGAACTTGTTCGATAAACATATTTATTTTTTA
* * * *
106267 AATCTCCAGCTTATTAATTTTTAGAATATTAATAAATTAGTATTATCTTATTT
129 AATCT-TA-CTTATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTC
* * * * *
106320 TGAGTAAACTTGTATGAATAAAAACTATTGTTTTATGA-AAAATCAAAATATCATAACAATTTGA
1 TGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAA-CAAAAGATCATAACAATTTGA
* * * *
106384 AATAAAATAATTATTTAAGTAGTCATAACTATTTGAA-TTCGCTCGATAAACAAATTTATTTTTT
65 AAT-AGATAATTATTTAAATAGTCATAACTATTTGAACTT-GTTCGATAAACATATTTATTTTTT
* * *
106448 AAATCTTTAAGTTATTAATTTTTTGAATTTTAATAAATTAATATTATTTTATTC
128 AAATC-TT-ACTTATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTC
* * * * * * *
106502 TGAATAAGTTTTTATGAATAGAAACAATTGGTGTATGA-TAAA-AAAAGGTCATAACGATTTGAA
1 TGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACAATTTGAA
* * * * *
106565 ATAGATAATTGTTTAAATAGTAATAACTATTTGAACGTGTTTTGA-AAATATATTTATTTTTTAA
66 ATAGATAATTATTTAAATAGTCATAACTATTTGAACTTG-TTCGATAAACATATTTATTTTTTAA
* ** * *
106629 ATTTTTACTTATTAATCCTTAGAATATTAGTAAATT-ATATTATTTTATTG
130 A-TCTTACTTATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTC
** ** *
106679 AAAATAAGCTTGTATGAAT-GTAAACAATTATTTTA
1 TGAATAAATTTGTATGAATAG-AAACAATTGTTTTA
106714 CAATTGTATC
Statistics
Matches: 468, Mismatches: 87, Indels: 39
0.79 0.15 0.07
Matches are distributed among these distances:
176 42 0.09
177 102 0.22
178 28 0.06
179 50 0.11
180 31 0.07
181 90 0.19
182 121 0.26
183 4 0.01
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (179 bp):
TGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACAATTTGAA
ATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCGATAAACATATTTATTTTTTAAA
TCTTACTTATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTC
Found at i:106487 original size:23 final size:25
Alignment explanation
Indices: 106435--106489 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
106425 CTCGATAAAC
*
106435 AAATTTATTTTTTAAATCTTTAAGT
1 AAATTAATTTTTTAAATCTTTAAGT
* *
106460 -TATTAATTTTTTGAAT-TTTAA-T
1 AAATTAATTTTTTAAATCTTTAAGT
106482 AAATTAAT
1 AAATTAAT
106490 ATTATTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 11 0.44
24 13 0.52
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (25 bp):
AAATTAATTTTTTAAATCTTTAAGT
Found at i:106501 original size:363 final size:353
Alignment explanation
Indices: 105975--106713 Score: 851
Period size: 359 Copynumber: 2.1 Consensus size: 353
105965 AATAAGTTTA
* * *
105975 TATGAATAGAAACAACTATTTTATGACAAAACAAAGATCATACCAATTTGAAATAGATAACTATT
1 TATGAATAAAAACAACTATTTTATGACAAAACAAAGATCATAACAATTTGAAATAAATAACTATT
* * * *
106040 CAAATAGTCATATCTATTTGAACTGGTCTGGTAAACAGATTTAGGTTTTAAATCTCTTATTAATT
66 CAAATAGTCATAACTATTTGAACTGCTCTGATAAACAAATTTAGGTTTTAAATCTCTTATTAATT
106105 TTCAAAATATTAATAGAATAATATTATTTTATTCTAAATAA-TTTTGTATGAATAGAAACAATTG
131 TTCAAAATATTAATAGAATAATATTATTTTATTCTAAATAAGTTTT-TATGAATAGAAACAATTG
* * * * *
106169 TTTTATGACAAAACAAAATGTCCTAACGATTTGAAATAGATAATAGTTTAAAT-GGACATGACTA
195 GTGTATGA-AAAA-AAAAGGTCATAACGATTTGAAATAGATAATAGTTTAAATAGGA-ATAACTA
* **
106233 TTTGAACTTG-TTTGATAAACATATTTATTATTTAAATCTCCAGCTTATTAATTTTTAGAATATT
257 TTTGAACGTGTTTTGA-AAACATATTTATTATTTAAATCTCCA-CTTATTAATCCTTAGAATATT
106297 AATAAATTAGTATTATCTTATTTTGAGTAAACTTG
320 AATAAATTA-TATTATCTTATTTTGAGTAAACTTG
* * * * *
106332 TATGAATAAAAACTATTGTTTTATGA-AAAATCAAAATATCATAACAATTTGAAATAAAATAATT
1 TATGAATAAAAACAACTATTTTATGACAAAA-C-AAAGATCATAACAATTTGAAAT-AAATAACT
* * * ** *
106396 ATTTAAGTAGTCATAACTATTTGAATTCGCTC-GATAAACAAATTTATTTTTTAAATCTTTAAGT
63 ATTCAAATAGTCATAACTATTTGAACT-GCTCTGATAAACAAATTTAGGTTTTAAATC--T--CT
*** * *
106460 TATTAATTTTTTGAATTTTAATA-AATTAATATTATTTTATTCTGAATAAGTTTTTATGAATAGA
123 TATTAATTTTCAAAATATTAATAGAA-TAATATTATTTTATTCTAAATAAGTTTTTATGAATAGA
* * *
106524 AACAATTGGTGTATGATAAAAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGTAAT
187 AACAATTGGTGTATGAAAAAAAAAGGTCATAACGATTTGAAATAGATAATAGTTTAAATAGGAAT
* * * **
106589 AACTATTTGAACGTGTTTTGAAAATATATTTATTTTTTAAATTTTTACTTATTAATCCTTAGAAT
252 AACTATTTGAACGTGTTTTGAAAACATATTTATTATTTAAATCTCCACTTATTAATCCTTAGAAT
* * *** * *
106654 ATTAGTAAATTATATTATTTTATTGAAAATAAGCTTG
317 ATTAATAAATTATATTATCTTATTTTGAGTAAACTTG
** *
106691 TATGAATGTAAACAATTATTTTA
1 TATGAATAAAAACAACTATTTTA
106714 CAATTGTATC
Statistics
Matches: 320, Mismatches: 50, Indels: 22
0.82 0.13 0.06
Matches are distributed among these distances:
356 4 0.01
357 23 0.07
358 20 0.06
359 88 0.28
360 30 0.09
361 73 0.23
362 12 0.04
363 66 0.21
364 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (353 bp):
TATGAATAAAAACAACTATTTTATGACAAAACAAAGATCATAACAATTTGAAATAAATAACTATT
CAAATAGTCATAACTATTTGAACTGCTCTGATAAACAAATTTAGGTTTTAAATCTCTTATTAATT
TTCAAAATATTAATAGAATAATATTATTTTATTCTAAATAAGTTTTTATGAATAGAAACAATTGG
TGTATGAAAAAAAAAGGTCATAACGATTTGAAATAGATAATAGTTTAAATAGGAATAACTATTTG
AACGTGTTTTGAAAACATATTTATTATTTAAATCTCCACTTATTAATCCTTAGAATATTAATAAA
TTATATTATCTTATTTTGAGTAAACTTG
Found at i:106798 original size:20 final size:20
Alignment explanation
Indices: 106770--106807 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
106760 ATTTAATAAT
106770 ATTTCAAAAATT-AATATGAC
1 ATTT-AAAAATTAAATATGAC
106790 ATTTAAAAATTAAATATG
1 ATTTAAAAATTAAATATG
106808 TTTGCTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
ATTTAAAAATTAAATATGAC
Found at i:107701 original size:16 final size:16
Alignment explanation
Indices: 107660--107707 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
107650 ATTATAAAAA
107660 TATTATAATTATTATAT
1 TATTATAA-TATTATAT
*
107677 TATAATAATATTA-AT
1 TATTATAATATTATAT
107692 TATTAGTAATATTATA
1 TATTA-TAATATTATA
107708 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTATAATATTATAT
Found at i:107713 original size:18 final size:18
Alignment explanation
Indices: 107657--107730 Score: 61
Period size: 18 Copynumber: 4.3 Consensus size: 18
107647 AATATTATAA
107657 AAATATTATAAT--TATT
1 AAATATTATAATAATATT
107673 --ATATTATAATAATATT
1 AAATATTATAATAATATT
* *
107689 AATTATTAGTAATATTA-T
1 AAATATTA-TAATAATATT
107707 AAATATTA-ATATAATAATT
1 AAATATTATA-ATAAT-ATT
107726 AAATA
1 AAATA
107731 ATGACAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
14 10 0.22
16 5 0.11
17 4 0.09
18 14 0.30
19 13 0.28
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (18 bp):
AAATATTATAATAATATT
Found at i:107742 original size:53 final size:52
Alignment explanation
Indices: 107641--107751 Score: 132
Period size: 53 Copynumber: 2.1 Consensus size: 52
107631 GGATAACAAA
* * * * * *
107641 ATTACTAATATTATAAAAATATTATAATTATTATATTATAATAATATTAATT
1 ATTAGTAATATTATAAAAATAATATAATAATTAAATAATAACAATATTAATT
* *
107693 ATTAGTAATATTATAAATATTAATATAATAATTAAATAATGACAATATTAATT
1 ATTAGTAATATTATAAA-AATAATATAATAATTAAATAATAACAATATTAATT
*
107746 AGTAGT
1 ATTAGT
107752 TTAATAATAA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 16 0.33
53 33 0.67
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (52 bp):
ATTAGTAATATTATAAAAATAATATAATAATTAAATAATAACAATATTAATT
Found at i:107769 original size:11 final size:11
Alignment explanation
Indices: 107646--107771 Score: 53
Period size: 11 Copynumber: 11.5 Consensus size: 11
107636 ACAAAATTAC
*
107646 TAATATTATAA
1 TAATAATATAA
* *
107657 AAATATTATAA
1 TAATAATATAA
* * *
107668 TTATTATATTA
1 TAATAATATAA
107679 TAATAATAT--
1 TAATAATATAA
* *
107688 TAATTAT-TAG
1 TAATAATATAA
*
107698 TAATATTATAAA
1 TAATAATAT-AA
*
107710 TATTAATATAA
1 TAATAATATAA
107721 TAATTAA-ATAA
1 TAA-TAATATAA
* *
107732 TGACAATATTAA
1 TAATAATA-TAA
* * *
107744 TTAGTAGTTTAA
1 -TAATAATATAA
107756 TAATAATATAA
1 TAATAATATAA
107767 TAATA
1 TAATA
107772 CTAATTACAA
Statistics
Matches: 82, Mismatches: 25, Indels: 16
0.67 0.20 0.13
Matches are distributed among these distances:
8 1 0.01
9 6 0.07
10 7 0.09
11 48 0.59
12 17 0.21
13 3 0.04
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (11 bp):
TAATAATATAA
Found at i:107819 original size:16 final size:15
Alignment explanation
Indices: 107798--107828 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
107788 ATTAAACTGT
107798 TAATAATAAATAATTA
1 TAATAATAAA-AATTA
107814 TAATAATAAAAATTA
1 TAATAATAAAAATTA
107829 GTATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAATAATAAAAATTA
Found at i:109028 original size:21 final size:21
Alignment explanation
Indices: 108990--109029 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
108980 ATCATAAATT
*
108990 AAAATAATTTTAATTAATATG
1 AAAATAATTTTAACTAATATG
109011 AAAATAA-TTTATACTAATA
1 AAAATAATTTTA-ACTAATA
109030 ATATTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
AAAATAATTTTAACTAATATG
Found at i:109972 original size:28 final size:29
Alignment explanation
Indices: 109940--109999 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
109930 ATACATTAAA
*
109940 ATAAAATA-AATATAATTTATATTATAAT
1 ATAAAATATAATATAATTTATAATATAAT
* * *
109968 AT-AAATATAATCTATTTTATAATATACT
1 ATAAAATATAATATAATTTATAATATAAT
109996 ATAA
1 ATAA
110000 TATTAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.19
28 20 0.77
29 1 0.04
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (29 bp):
ATAAAATATAATATAATTTATAATATAAT
Found at i:110010 original size:23 final size:23
Alignment explanation
Indices: 109940--110010 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
109930 ATACATTAAA
*
109940 ATAAAATAAATATAATTTATATT
1 ATAATATAAATATAATTTATATT
* *
109963 ATAATATAAATATAATCTATTTT
1 ATAATATAAATATAATTTATATT
* *
109986 ATAATAT-ACTATAATATTAAATT
1 ATAATATAAATATAAT-TTATATT
110009 AT
1 AT
110011 TATAAGTTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 7 0.17
23 33 0.82
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATATAAATATAATTTATATT
Found at i:110217 original size:20 final size:19
Alignment explanation
Indices: 110181--110227 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
110171 TCAAATTATC
110181 ATAATTA-TATTAATAATT
1 ATAATTATTATTAATAATT
*
110199 ATAATCTATTATTATTAATT
1 ATAAT-TATTATTAATAATT
110219 ATAATTATT
1 ATAATTATT
110228 TATAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 6 0.23
20 15 0.58
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATAATTATTATTAATAATT
Found at i:110230 original size:20 final size:20
Alignment explanation
Indices: 110174--110230 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
110164 TTAATAATCA
* *
110174 AATTATCATAATTATATTAAT
1 AATTATAATTATT-TATTAAT
*
110195 AATTATAATCTA-TTATTATT
1 AATTATAAT-TATTTATTAAT
110215 AATTATAATTATTTAT
1 AATTATAATTATTTAT
110231 AAATTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 2 0.06
20 19 0.61
21 9 0.29
22 1 0.03
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTATAATTATTTATTAAT
Found at i:110386 original size:18 final size:20
Alignment explanation
Indices: 110340--110386 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
110330 GTTAATATTG
110340 TTAATATTAATTGTATATAAA
1 TTAATA-TAATTGTATATAAA
* *
110361 TTATTATAATT-TA-ATAAT
1 TTAATATAATTGTATATAAA
110379 TTAATATA
1 TTAATATA
110387 TTATAATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 11 0.48
19 2 0.09
20 5 0.22
21 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATATAATTGTATATAAA
Found at i:110478 original size:15 final size:14
Alignment explanation
Indices: 110439--110480 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
110429 CAATATCATA
*
110439 AATA-ATAATATAT
1 AATATATAATTTAT
110452 AATATACTAATTTAT
1 AATATA-TAATTTAT
110467 AAGTATATAATTTA
1 AA-TATATAATTTA
110481 AGTTTATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 4 0.16
14 1 0.04
15 16 0.64
16 4 0.16
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (14 bp):
AATATATAATTTAT
Found at i:110675 original size:21 final size:21
Alignment explanation
Indices: 110651--110691 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
110641 TTATAATGCA
110651 TAAAATATAA-TATTTAATTAG
1 TAAAATATAATTA-TTAATTAG
*
110672 TAAATTATAATTATTAATTA
1 TAAAATATAATTATTAATTA
110692 TATTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAATATAATTATTAATTAG
Found at i:110684 original size:14 final size:13
Alignment explanation
Indices: 110656--110712 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
110646 ATGCATAAAA
110656 TATAATATT-TAAT
1 TATAA-ATTATAAT
110669 TAGTAAATTATAAT
1 TA-TAAATTATAAT
*
110683 TATTAATTAT-AT
1 TATAAATTATAAT
110695 T-TAATATTA-AAT
1 TATAA-ATTATAAT
110707 TATAAA
1 TATAAA
110713 ATAGTTATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
11 2 0.05
12 11 0.30
13 15 0.41
14 9 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
TATAAATTATAAT
Found at i:110745 original size:19 final size:18
Alignment explanation
Indices: 110600--110745 Score: 70
Period size: 19 Copynumber: 7.7 Consensus size: 18
110590 GTTTATTACA
*
110600 ATAATTATTATATTAAAAT
1 ATAATTATTA-ATTATAAT
*
110619 ATAATTAAATT-CTTATAAT
1 ATAATT--ATTAATTATAAT
*
110638 AT-ATTA-TAATGCATAAAAT
1 ATAATTATTAAT---TATAAT
110657 ATAA-TATTTAATTAGTAAATT
1 ATAATTA-TTAATTA-T-AA-T
110678 ATAATTATTAATTAT-AT
1 ATAATTATTAATTATAAT
* *
110695 TTAA-TATTAAATTATAAA
1 ATAATTATT-AATTATAAT
* *
110713 ATAGTTATGGAATTATAAT
1 ATAATTAT-TAATTATAAT
110732 ATAATTAATTAATT
1 ATAATT-ATTAATT
110746 GTTTACTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 36
0.66 0.09 0.25
Matches are distributed among these distances:
15 1 0.01
16 6 0.06
17 10 0.10
18 9 0.09
19 43 0.45
20 6 0.06
21 19 0.20
22 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (18 bp):
ATAATTATTAATTATAAT
Found at i:110913 original size:30 final size:33
Alignment explanation
Indices: 110865--110930 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 33
110855 TTCAGTTCAA
*
110865 ATAATAATAATTATTATATTA-TA-TATA-AAT
1 ATAATAATAATTACTATATTATTAGTATATAAT
110895 ATAAT-ATAATTTACTATATTATTAGTATATAAT
1 ATAATAATAA-TTACTATATTATTAGTATATAAT
110928 ATA
1 ATA
110931 TTTAATTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 4 0.13
30 15 0.48
31 2 0.06
32 4 0.13
33 6 0.19
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (33 bp):
ATAATAATAATTACTATATTATTAGTATATAAT
Found at i:110940 original size:28 final size:28
Alignment explanation
Indices: 110893--110946 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
110883 TTATATATAA
*
110893 ATATAATATAATTTACTATATTATTAGT
1 ATATAATATAATTTACTATATAATTAGT
*
110921 ATATAATAT-ATTTAATTATATAATTA
1 ATATAATATAATTT-ACTATATAATTA
110947 AATAGTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (28 bp):
ATATAATATAATTTACTATATAATTAGT
Found at i:111463 original size:22 final size:21
Alignment explanation
Indices: 111430--111529 Score: 84
Period size: 22 Copynumber: 4.7 Consensus size: 21
111420 TTAATATCAT
*
111430 TAATTAA-TATTATAAATTTA
1 TAATTAACAATTATAAATTTA
111450 TAATATAACAATTATAATATTATA
1 TAAT-TAACAATTATAA-ATT-TA
111474 TAATTAACAATT-T-AATTTA
1 TAATTAACAATTATAAATTTA
*
111493 TTATTAATCAAATTAT-AATTTA
1 TAATTAA-C-AATTATAAATTTA
*
111515 AAATTTAA-AATTATA
1 TAA-TTAACAATTATA
111530 TTTAACATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 17
0.76 0.05 0.19
Matches are distributed among these distances:
19 8 0.12
20 14 0.21
21 8 0.12
22 16 0.24
23 15 0.22
24 6 0.09
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATTAACAATTATAAATTTA
Found at i:111534 original size:19 final size:20
Alignment explanation
Indices: 111502--111541 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
111492 ATTATTAATC
111502 AAATTATAATTTAAAATTTA
1 AAATTATAATTTAAAATTTA
*
111522 AAATTAT-ATTTAACATTTA
1 AAATTATAATTTAAAATTTA
111541 A
1 A
111542 TATTTAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATTATAATTTAAAATTTA
Found at i:111901 original size:16 final size:16
Alignment explanation
Indices: 111832--111935 Score: 79
Period size: 16 Copynumber: 6.2 Consensus size: 16
111822 AGAAATATTA
* *
111832 ATTAATAAATTGTTAT
1 ATTAATAAATTATAAT
*
111848 ATTATTAAATTAGTATAT
1 ATTAATAAATTA-TA-AT
*
111866 ATCAATAAATTATAAT
1 ATTAATAAATTATAAT
*
111882 ATTAATAATTTA-AAT
1 ATTAATAAATTATAAT
111897 AATTAA-ACAATTAATAAT
1 -ATTAATA-AATT-ATAAT
111915 ATT-ATAATATTATAATT
1 ATTAATAA-ATTATAA-T
111932 ATTA
1 ATTA
111936 TAATTATTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
15 4 0.06
16 36 0.51
17 15 0.21
18 15 0.21
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTAATAAATTATAAT
Found at i:111940 original size:9 final size:9
Alignment explanation
Indices: 111910--111956 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
111900 TAAACAATTA
111910 ATAA-TATT
1 ATAATTATT
111918 ATAA-TATT
1 ATAATTATT
111926 ATAATTATT
1 ATAATTATT
111935 ATAATTATT
1 ATAATTATT
111944 -TAAATTA-T
1 AT-AATTATT
111952 ATAAT
1 ATAAT
111957 AAAATACTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
8 17 0.47
9 19 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATAATTATT
Found at i:113242 original size:17 final size:17
Alignment explanation
Indices: 113211--113243 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
113201 AAATTAATTA
113211 AATATAAATTTTATTTT
1 AATATAAATTTTATTTT
113228 AATA-AAATTTATATTT
1 AATATAAATTT-TATTT
113244 AGAATAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AATATAAATTTTATTTT
Found at i:113846 original size:14 final size:14
Alignment explanation
Indices: 113772--113844 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
113762 AGTAAATTTA
*
113772 AATAGATATAAT-T
1 AATATATATAATAT
113785 AATA-AT-TAATAT
1 AATATATATAATAT
113797 AATATATATAATAT
1 AATATATATAATAT
* *
113811 CACA-ATACTAATAT
1 AATATATA-TAATAT
* *
113825 AACAATTTATAATAT
1 AA-TATATATAATAT
113840 AATAT
1 AATAT
113845 TTTATTTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
11 4 0.08
12 7 0.15
13 9 0.19
14 17 0.35
15 9 0.19
16 2 0.04
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.38
Consensus pattern (14 bp):
AATATATATAATAT
Found at i:113930 original size:18 final size:19
Alignment explanation
Indices: 113903--113939 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
113893 TTTTATAACT
113903 AAGTTAAATAATATAATTA
1 AAGTTAAATAATATAATTA
113922 AAGTT-AATAATATAATTA
1 AAGTTAAATAATATAATTA
113940 TTATTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
AAGTTAAATAATATAATTA
Found at i:114823 original size:19 final size:19
Alignment explanation
Indices: 114799--114841 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
114789 ATATCAGTAT
* *
114799 ATTATAGATTTTAATTTAA
1 ATTATAAATTTAAATTTAA
*
114818 ATTATAAATTTAAATTTAT
1 ATTATAAATTTAAATTTAA
114837 ATTAT
1 ATTAT
114842 TTATATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTATAAATTTAAATTTAA
Found at i:115332 original size:12 final size:13
Alignment explanation
Indices: 115304--115336 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
115294 GCTTATTGCT
115304 TTATTATAGCTTA
1 TTATTATAGCTTA
*
115317 TTATTATATC-TA
1 TTATTATAGCTTA
115329 TTATTATA
1 TTATTATA
115337 ACATTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (13 bp):
TTATTATAGCTTA
Found at i:115434 original size:29 final size:30
Alignment explanation
Indices: 115392--115449 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
115382 AATTAACGTT
115392 AATATTAATTAAAA-TATTTATTAATATTTA
1 AATATTAATTAAAATTA-TTATTAATATTTA
115422 AATATTAA-TAAAATTATTATTAATATTT
1 AATATTAATTAAAATTATTATTAATATTT
115450 TATTTAACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (30 bp):
AATATTAATTAAAATTATTATTAATATTTA
Found at i:116235 original size:176 final size:177
Alignment explanation
Indices: 115742--116502 Score: 701
Period size: 177 Copynumber: 4.3 Consensus size: 177
115732 CCGAGTAAGC
* * * * * *
115742 TCAAATAGTTATAACTGTTTGAACAATTTTTTATTTCTAAT-AGTTATGATCTTTTGTTTTGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGATCTTTTATTTTGTCA
* * * * * *
115806 TAAAATAATTGTTTCTATTCGTATATGTTTATTCAAAATAAAATAATACTACTTTATTAATATTT
65 TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
*** * *
115871 TTCAAATTAATAGGTAGGAGATTTAAAAAATAAATCTGTTTACTGAATAAGT
130 AAAAAATTAATA---A-GAGATTTAAAAAATAAATCTATTTACTGAACAAGT
* * * * ** * *
115923 TCAAATAGTCATGTCCATTAGAACAATTATCTATTTCAAATTGTTATGACCTTTTATTTTGTTAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTATTTTGTCAT
* * ** *
115988 AAAACAATTGTTTCTGTTCATAC-AGAATTATTCAAAATAAAATAATTTTGATTTATTAATATTT
66 AAAACAATTGTTTCTATTCATACAAG-CTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * * *
116052 TAAAAATTAATAAGAGATTTAAAAACTAAATCTATTTACTAAACCAGT
130 AAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTGAACAAGT
* *
116100 TCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGATC-TTTATTTTGTCAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTATTTTGTCAT
* ** * * *
116164 ACAACAATTGTTTCCT-TTCATACAAGCTTATTCGGATTAAAATGATACTAATTTAATAATATTT
66 AAAACAATTGTTT-CTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* *
116228 AAAAAATTAATAAGAGATTTAAAAAATAAA--TATGTTAGCCGAACTAGT
130 AAAAAATTAATAAGAGATTTAAAAAATAAATCTAT-TTA-CTGAACAAGT
* ** ** * * * *
116276 TTAAATAGTTAAAACTATCAGAATAATTATCTATTTCAAATCATTGT-ATCCTTTTGTTTAGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAT-CTTTTATTTTGTCA
* * * *** * * *
116340 TAAAAAAATTATTTC-AGCTCATACAAGCTTATTTGGAATAAAATAATATTAATTTGTTAACATT
65 TAAAACAATTGTTTCTA-TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * * *
116404 AAAAAAATTAAAGCAAGAGATTTAAAATAATAAATCTGTTTACTGAATAATT
129 TAAAAAATT-AA-TAAGAGATTTAAAA-AATAAATCTATTTACTGAACAAGT
* * * *
116456 TCAAATAGATATGACTATTTAAACAATTATCTATTTAAAATTATTAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT
116503 AATTATAATA
Statistics
Matches: 470, Mismatches: 95, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
174 3 0.01
175 5 0.01
176 135 0.29
177 144 0.31
178 3 0.01
179 13 0.03
180 49 0.10
181 116 0.25
182 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTATTTTGTCAT
AAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTA
AAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTGAACAAGT
Found at i:118095 original size:22 final size:22
Alignment explanation
Indices: 118032--118145 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
118022 TTTAAAGAAA
*
118032 TAATATATT-ATAAT-TATATAC
1 TAATATATTAATAATAT-TATAT
118053 TAATA-ATTAATAA-A-T-TA-
1 TAATATATTAATAATATTATAT
118070 TAATATATTAATAATATTATAT
1 TAATATATTAATAATATTATAT
* * *
118092 TAATTTGTTTATAACTTAGATTATAT
1 TAATATATTAATAA--T--ATTATAT
118118 T--TATATTAATAATAATTTATAT
1 TAATATATTAATAAT-A-TTATAT
118140 TAATAT
1 TAATAT
118146 CAAAATATAC
Statistics
Matches: 72, Mismatches: 7, Indels: 25
0.69 0.07 0.24
Matches are distributed among these distances:
17 5 0.07
18 10 0.14
19 2 0.03
20 4 0.06
21 12 0.17
22 19 0.26
24 12 0.17
26 8 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TAATATATTAATAATATTATAT
Found at i:118096 original size:28 final size:28
Alignment explanation
Indices: 118032--118085 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
118022 TTTAAAGAAA
* *
118032 TAATATATTATAATTATATACTAATAAT
1 TAATAAATTATAATTATATAATAATAAT
118060 TAATAAATTATAA-TATATTAATAATA
1 TAATAAATTATAATTATA-TAATAATA
118086 TTATATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
TAATAAATTATAATTATATAATAATAAT
Found at i:118159 original size:22 final size:22
Alignment explanation
Indices: 118112--118166 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
118102 ATAACTTAGA
* * *
118112 TTATATTTATATTAATAATAAT
1 TTATATTAATATCAATAATAAC
118134 TTATATTAATATCAA-AATATAC
1 TTATATTAATATCAATAATA-AC
118156 TTAT-TTAATAT
1 TTATATTAATAT
118167 TATGTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATATTAATATCAATAATAAC
Found at i:118321 original size:18 final size:18
Alignment explanation
Indices: 118258--118310 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
118248 TTTATATAAA
*
118258 ATATTATTAAT-TTATATT
1 ATATTATTAATATAATA-T
*
118276 AGATTATTAATATAATAT
1 ATATTATTAATATAATAT
118294 ATATTATTAA-ATAATAT
1 ATATTATTAATATAATAT
118311 CAATTATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 7 0.23
18 20 0.65
19 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATATTATTAATATAATAT
Found at i:118880 original size:15 final size:15
Alignment explanation
Indices: 118860--118889 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
118850 CCTTTTGTAA
118860 TATTATAATTATAAT
1 TATTATAATTATAAT
118875 TATTATAATTATAAT
1 TATTATAATTATAAT
118890 AGATTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATAATTATAAT
Found at i:118969 original size:18 final size:19
Alignment explanation
Indices: 118926--118973 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
118916 AGTAACATTT
*
118926 GATAATTATATTATCAAATA
1 GATAATTA-ATTATAAAATA
118946 -ATTAATTAATT-TAAAATA
1 GA-TAATTAATTATAAAATA
118964 GATAATTAAT
1 GATAATTAAT
118974 AGAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 14 0.56
19 5 0.20
20 6 0.24
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (19 bp):
GATAATTAATTATAAAATA
Found at i:119225 original size:19 final size:19
Alignment explanation
Indices: 119201--119240 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
119191 ATAAATGAAG
*
119201 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
119220 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
119239 AT
1 AT
119241 ATTGTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:119289 original size:28 final size:25
Alignment explanation
Indices: 119225--119292 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 25
119215 ATTAAATTAA
119225 ATTA-ATATTATTA-AA-TATTGTT
1 ATTATATATTATTATAATTATTGTT
119247 ATTATATATTATTATAATTATTGTAAT
1 ATTATATATTATTATAATTATTGT--T
119274 ATTGATATATTATTATAAT
1 ATT-ATATATTATTATAAT
119293 ATAATATTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.10
23 9 0.22
24 2 0.05
25 6 0.15
27 4 0.10
28 15 0.38
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTATATATTATTATAATTATTGTT
Found at i:119967 original size:27 final size:27
Alignment explanation
Indices: 119937--119992 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
119927 AAAAATTAAA
*
119937 TTTATATATAATTATTTGAA-TATTGAT
1 TTTA-ATATAAATATTTGAATTATTGAT
* *
119964 TTTAATTTAAATATTTTAATTATTGAT
1 TTTAATATAAATATTTGAATTATTGAT
119991 TT
1 TT
119993 AAAATATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (27 bp):
TTTAATATAAATATTTGAATTATTGAT
Found at i:121261 original size:21 final size:21
Alignment explanation
Indices: 121235--121292 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
121225 AGTTTAAATA
* *
121235 ATAATATTATTAATTATT-ATT
1 ATAATAGTAATAA-TATTAATT
121256 ATAATAGTAATAATATTAATT
1 ATAATAGTAATAATATTAATT
*
121277 ATAATAATAAATAATA
1 ATAATAGT-AATAATA
121293 GTCAAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 21 0.66
22 7 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAATAGTAATAATATTAATT
Found at i:121261 original size:27 final size:27
Alignment explanation
Indices: 121206--121292 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
121196 TTAAATTATC
* * *
121206 TAATAATAA-ATTCTTAGTTAGT-TTA
1 TAATAATAATATTATTAATTATTATTA
121231 -AATAATAATATTATTAATTATTATTA
1 TAATAATAATATTATTAATTATTATTA
* * * *
121257 TAATAGTAATAATATTAATTATAATAA
1 TAATAATAATATTATTAATTATTATTA
121284 TAAATAATA
1 T-AATAATA
121293 GTCAAAATAT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 8 0.16
25 10 0.20
26 3 0.06
27 23 0.46
28 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (27 bp):
TAATAATAATATTATTAATTATTATTA
Found at i:121316 original size:31 final size:31
Alignment explanation
Indices: 121233--121317 Score: 77
Period size: 31 Copynumber: 2.8 Consensus size: 31
121223 TTAGTTTAAA
* * * *
121233 TAATAATATTATTAATTATTAT-TATAATAG
1 TAATAATATTAATAATAATAATAAATAATAG
*
121263 TAATAATATTAATTATAATAATAAATAATAG
1 TAATAATATTAATAATAATAATAAATAATAG
*
121294 TCAA-AATA-TAACTAATAGTAATAA
1 T-AATAATATTAA-TAATAATAATAA
121318 TTTTAATTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 21 0.47
31 22 0.49
32 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (31 bp):
TAATAATATTAATAATAATAATAAATAATAG
Found at i:122571 original size:18 final size:18
Alignment explanation
Indices: 122548--122585 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
122538 ATTAATTATT
122548 ATTAATTTA-ATTATTTAA
1 ATTAATTTATATTA-TTAA
122566 ATTAATTTATATTATTAA
1 ATTAATTTATATTATTAA
122584 AT
1 AT
122586 AGAATAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTAATTTATATTATTAA
Found at i:122582 original size:41 final size:41
Alignment explanation
Indices: 122492--122583 Score: 98
Period size: 41 Copynumber: 2.2 Consensus size: 41
122482 TTTATAATAA
* *
122492 ATATTATAAATCATTAATAATTATAATTATTACATAATTTT
1 ATATTATTAATCATTAATAATTATAATTATTAAATAATTTT
* * * *
122533 TTAATATTAATTATTATTAATT-TAATTATTTAAATTAA-TTT
1 ATATTATTAATCATTAATAATTATAATTA-TTAAA-TAATTTT
122574 ATATTATTAA
1 ATATTATTAA
122584 ATAGAATAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
40 6 0.15
41 32 0.78
42 3 0.07
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (41 bp):
ATATTATTAATCATTAATAATTATAATTATTAAATAATTTT
Found at i:122822 original size:26 final size:25
Alignment explanation
Indices: 122793--122880 Score: 65
Period size: 26 Copynumber: 3.3 Consensus size: 25
122783 AATTAAATGA
122793 TAATTATATTTATACTAATTATAAAT
1 TAATTATATTTATA-TAATTATAAAT
*
122819 TAATATTTATTTAT-TAATT-TAAA-
1 TAAT-TATATTTATATAATTATAAAT
*
122842 TATTTATATTTAATATTCAATTATTAAAT
1 TAATTATATTT-ATA-T-AATTA-TAAAT
122871 ATAAATTATA
1 -T-AATTATA
122881 AATAACAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
22 6 0.12
23 5 0.10
24 4 0.08
25 6 0.12
26 8 0.17
27 8 0.17
28 4 0.08
30 1 0.02
31 6 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TAATTATATTTATATAATTATAAAT
Found at i:123205 original size:22 final size:22
Alignment explanation
Indices: 123163--123253 Score: 60
Period size: 22 Copynumber: 4.0 Consensus size: 22
123153 AATATTTATA
123163 TAAAATATTATATAATAACTAT
1 TAAAATATTATATAATAACTAT
* *
123185 TAAATTATTAT-TTATATACTAT
1 TAAAATATTATATAATA-ACTAT
** * * *
123207 TTGAATATAAAATATATAAATAT
1 TAAAATATTATATA-ATAACTAT
123230 TAAATAATATTATTATAAT-ACTAT
1 T-AA-AATATTA-TATAATAACTAT
123254 ATTTATATAT
Statistics
Matches: 49, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
21 4 0.08
22 21 0.43
23 6 0.12
24 7 0.14
25 8 0.16
26 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (22 bp):
TAAAATATTATATAATAACTAT
Found at i:123314 original size:29 final size:26
Alignment explanation
Indices: 123278--123341 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 26
123268 ATTATTATAG
123278 AATAATATAACAATTATTATATATAATT
1 AATAATATAACAATTA--ATATATAATT
* *
123306 AAATAATATAATAATTAATTTATAATT
1 -AATAATATAACAATTAATATATAATT
123333 AAT-ATATAA
1 AATAATATAA
123342 TTATTAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 6 0.18
26 3 0.09
27 9 0.27
29 15 0.45
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AATAATATAACAATTAATATATAATT
Found at i:123332 original size:11 final size:11
Alignment explanation
Indices: 123245--123366 Score: 67
Period size: 11 Copynumber: 11.1 Consensus size: 11
123235 AATATTATTA
*
123245 TAATACTATATT
1 TAATA-TATAAT
123257 TATATATAATAAT
1 TA-ATAT-ATAAT
* *
123270 TATTATAGAA-
1 TAATATATAAT
*
123280 TAATATAACAAT
1 TAATAT-ATAAT
*
123292 TATTATAT-A-
1 TAATATATAAT
123301 TAAT-TA-AA-
1 TAATATATAAT
123309 TAATATAATAAT
1 TAATAT-ATAAT
*
123321 TAATTTATAAT
1 TAATATATAAT
123332 TAATATATAAT
1 TAATATATAAT
* * *
123343 TATTAAATATT
1 TAATATATAAT
123354 TAATACTATAAT
1 TAATA-TATAAT
123366 T
1 T
123367 GTTATTAACA
Statistics
Matches: 84, Mismatches: 16, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
8 7 0.08
9 4 0.05
10 7 0.08
11 36 0.43
12 21 0.25
13 9 0.11
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (11 bp):
TAATATATAAT
Found at i:123364 original size:48 final size:49
Alignment explanation
Indices: 123241--123365 Score: 125
Period size: 51 Copynumber: 2.5 Consensus size: 49
123231 AAATAATATT
*
123241 ATTATAATACTATATTT-ATATATAATAATTATTATAGAATAATATAACA
1 ATTATTATA-TATATTTAATATATAATAATTATTATAGAATAATATAACA
* * *
123290 ATTATTATATATAATTAAATAATATAATAATTAATTTATA-ATTAATAT-ATA
1 ATTATTATATAT-ATTTAAT-ATATAATAATT-A-TTATAGAATAATATAACA
123341 ATTATTA-A-ATATTTAATACTATAAT
1 ATTATTATATATATTTAATA-TATAAT
123366 TGTTATTAAC
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
47 1 0.02
48 15 0.23
49 13 0.20
50 3 0.05
51 20 0.31
52 8 0.12
53 5 0.08
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (49 bp):
ATTATTATATATATTTAATATATAATAATTATTATAGAATAATATAACA
Found at i:124217 original size:182 final size:181
Alignment explanation
Indices: 123879--124217 Score: 398
Period size: 182 Copynumber: 1.9 Consensus size: 181
123869 GAGTAAGCTA
** * *
123879 TTTTAAATAGTTGTAAATATTTGAATTTGTTCGATAAACAAATTTATTTTTTAAAACTCTTGCTT
1 TTTTAAATAGTCATAAATATTTGAACTTGTCCGATAAACAAATTTATTTTTTAAAACTCTTGCTT
* * * *
123944 ATTAACTTTCAAAATATTAAGAAATTAGTATTATTTTATTTTAAATATGCTCTTATGAACTGAAA
66 ATTAACTTTCAAAATATTAAGAAATTAGGATTATTTTATTCTAAATAAGCTCTTAAGAACTGAAA
* * *
124009 CAATTATTTTATGTCAAAACAAAAGGTCATAACTATTTTAAATAAATAATT
131 CAAGTATTTGATGACAAAACAAAAGGTCATAACTATTTTAAATAAATAATT
* * *
124060 TTTTAAATAGTCATAACTATTTGAACTTGTCCGGTAAACAAATTTATTTTTTCAAATA-TTTTGC
1 TTTTAAATAGTCATAAATATTTGAACTTGTCCGATAAACAAATTTATTTTTT-AAA-ACTCTTGC
* *** * * *
124124 TTATTAATTTTTTGAATGTTAATAAATTTGGATTATTTTATTCTAAATAAAG-T-TGTAAGATA-
64 TTATTAACTTTCAAAATATTAAGAAATTAGGATTATTTTATTCTAAAT-AAGCTCT-TAAGA-AC
* *
124186 TGAAACAAGTATTTGATGACTAAATAAAAGGT
126 TGAAACAAGTATTTGATGACAAAACAAAAGGT
124218 AAGAATGATC
Statistics
Matches: 130, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
181 47 0.36
182 79 0.61
183 4 0.03
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (181 bp):
TTTTAAATAGTCATAAATATTTGAACTTGTCCGATAAACAAATTTATTTTTTAAAACTCTTGCTT
ATTAACTTTCAAAATATTAAGAAATTAGGATTATTTTATTCTAAATAAGCTCTTAAGAACTGAAA
CAAGTATTTGATGACAAAACAAAAGGTCATAACTATTTTAAATAAATAATT
Found at i:124654 original size:30 final size:28
Alignment explanation
Indices: 124619--124733 Score: 83
Period size: 30 Copynumber: 3.9 Consensus size: 28
124609 CTAAGTAATA
124619 ATTATTTAATTATATATAATTAAATAA-ACT
1 ATTATTTAATT-TATAT-ATT-AATAATACT
* *
124649 ATTATTAAATTTATATATTAATAATAGT
1 ATTATTTAATTTATATATTAATAATACT
* *
124677 -TTATTTAATATTTAAATATT-ATAATTAAAT
1 ATTATTT-A-ATTTATATATTAATAA-T-ACT
124707 ATTATATTAATTTATAAATATTAATAA
1 ATTAT-TTAATTTAT--ATATTAATAA
124734 CTAAATTAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
27 10 0.14
28 10 0.14
29 16 0.23
30 17 0.25
31 5 0.07
32 7 0.10
33 4 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
ATTATTTAATTTATATATTAATAATACT
Found at i:124725 original size:32 final size:32
Alignment explanation
Indices: 124643--124756 Score: 93
Period size: 31 Copynumber: 3.7 Consensus size: 32
124633 TATAATTAAA
*
124643 TAAACTATTA-TTAA-ATTTATATATTAATAA-
1 TAAA-TATTATTTAATATTTAAATATTAATAAC
* *
124673 T-AGT-TTATTTAATATTTAAATATT-ATAAT
1 TAAATATTATTTAATATTTAAATATTAATAAC
124702 TAAATATTATATTAAT-TTATAAATATTAATAAC
1 TAAATATTAT-TTAATATT-TAAATATTAATAAC
*
124735 TAAAT-TAATTTAAT-TATTAAAT
1 TAAATATTATTTAATAT-TTAAAT
124757 GACATATTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
27 3 0.04
28 9 0.13
29 12 0.17
30 3 0.04
31 17 0.24
32 17 0.24
33 9 0.13
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (32 bp):
TAAATATTATTTAATATTTAAATATTAATAAC
Found at i:124746 original size:63 final size:63
Alignment explanation
Indices: 124621--124756 Score: 147
Period size: 63 Copynumber: 2.1 Consensus size: 63
124611 AAGTAATAAT
* * *
124621 TATTTAATTATATATAATTAAATAAACTATTATTAAATTTATATATTAATAATAGTTTATTTAA
1 TATTTAAATATATATAATTAAAT-AACTATTATTAAATTTATATATTAATAATAATTAATTTAA
*
124685 TATTTAAATAT-TATAATTAAAT-ATTA-TATT-AATTTATAAATATTAATAACTAAATTAATTT
1 TATTTAAATATATATAATTAAATAACTATTATTAAATTTAT--ATATTAATAA-T-AATTAATTT
124746 AA
62 AA
124748 T-TATTAAAT
1 TAT-TTAAAT
124757 GACATATTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
59 7 0.11
60 4 0.06
61 13 0.21
62 2 0.03
63 27 0.43
64 10 0.16
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (63 bp):
TATTTAAATATATATAATTAAATAACTATTATTAAATTTATATATTAATAATAATTAATTTAA
Found at i:125314 original size:16 final size:15
Alignment explanation
Indices: 125295--125325 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
125285 GAAATATGAA
125295 ATAATTATTATATAAT
1 ATAATTATTAT-TAAT
125311 ATAATTATTATTAAT
1 ATAATTATTATTAAT
125326 TTATAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATTATTATTAAT
Found at i:125398 original size:17 final size:17
Alignment explanation
Indices: 125363--125398 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
125353 ATTTACTTAG
*
125363 TATAAATATTAATATAT
1 TATAAATATTAATAAAT
*
125380 TATAAATATTATTAAAT
1 TATAAATATTAATAAAT
125397 TA
1 TA
125399 ATTAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAAATATTAATAAAT
Found at i:125398 original size:25 final size:25
Alignment explanation
Indices: 125370--125457 Score: 64
Period size: 25 Copynumber: 3.7 Consensus size: 25
125360 TAGTATAAAT
125370 ATTAATATATTATAAATATTATTAA
1 ATTAATATATTATAAATATTATTAA
125395 ATTAAT-TA--A-AAATATTA-TAA
1 ATTAATATATTATAAATATTATTAA
* *
125415 TATTAGTA-ACTTATAATTA-TATTATA
1 -ATTAATATA-TTATAAATATTATTA-A
* *
125441 ATTATTATTTTATAAAT
1 ATTAATATATTATAAAT
125458 TAATATACCT
Statistics
Matches: 49, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
20 3 0.06
21 14 0.29
22 1 0.02
24 5 0.10
25 25 0.51
26 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (25 bp):
ATTAATATATTATAAATATTATTAA
Found at i:125489 original size:32 final size:35
Alignment explanation
Indices: 125431--125495 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
125421 TAACTTATAA
*
125431 TTATATTATAATTATTATTTTATAAATTAATATACC
1 TTATATTATAATTATTA-TTTATAAATAAATATACC
125467 TTAT-TTATAATTATTA-TT-TAAATAAATAT
1 TTATATTATAATTATTATTTATAAATAAATAT
125496 TATAATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.36
33 2 0.07
35 12 0.43
36 4 0.14
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (35 bp):
TTATATTATAATTATTATTTATAAATAAATATACC
Found at i:125507 original size:32 final size:33
Alignment explanation
Indices: 125433--125509 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 33
125423 ACTTATAATT
*
125433 ATATTATAATTATTATTTTATAAATTAATATACC
1 ATATTATAATTATTATTTAATAAATTAATATA-C
* *
125467 TTATTTATAATTATTATTTAAATAAA-TATTATA-
1 ATA-TTATAATTATTATTT-AATAAATTAATATAC
125500 ATATTATAAT
1 ATATTATAAT
125510 ATATCATTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
32 7 0.19
33 2 0.05
34 2 0.05
35 21 0.57
36 5 0.14
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (33 bp):
ATATTATAATTATTATTTAATAAATTAATATAC
Found at i:125760 original size:16 final size:16
Alignment explanation
Indices: 125739--125792 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
125729 TAGTATTAAT
125739 TAAAATAATTAATAAA
1 TAAAATAATTAATAAA
125755 TAAAATAATTATTATATAA
1 TAAAATAATTA--ATA-AA
*
125774 T-AAATAGATTAATATA
1 TAAAATA-ATTAATAAA
125790 TAA
1 TAA
125793 TAATTATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
16 13 0.41
17 4 0.12
18 8 0.25
19 7 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TAAAATAATTAATAAA
Found at i:125775 original size:19 final size:18
Alignment explanation
Indices: 125739--125795 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
125729 TAGTATTAAT
125739 TAAAATAATTA-ATA-AA
1 TAAAATAATTATATATAA
125755 TAAAATAATTATTATATAA
1 TAAAATAATTA-TATATAA
125774 T-AAATAGATTAATATATAA
1 TAAAATA-ATT-ATATATAA
125793 TAA
1 TAA
125796 TTATTTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 11 0.31
18 8 0.23
19 14 0.40
20 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TAAAATAATTATATATAA
Done.