genome.fa.s32.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167857.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75388

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798--1017	13	17.0	13	72	10	130	44	38	0	16	1.52
798--1002	20	10.6	19	69	14	107	44	38	0	16	1.52
798--1015	78	2.8	77	78	10	194	44	37	0	16	1.52
885--992	33	3.4	33	81	6	116	43	37	0	18	1.57
956--1056	51	2.0	51	80	7	116	42	36	0	19	1.58
799--1017	7	33.7	7	72	16	132	44	37	0	16	1.52
1101--1141	21	2.0	21	90	0	64	29	17	7	46	1.74
1431--1527	45	2.2	45	84	3	124	38	4	12	45	1.61
2011--2071	18	3.4	17	72	22	54	72	3	13	11	1.24
2020--2093	29	2.6	28	76	16	80	71	2	13	12	1.25
2119--2297	25	7.2	25	84	3	209	29	10	7	52	1.64
2119--2297	50	3.6	50	83	1	234	29	10	7	52	1.64
11470--11506	19	2.0	20	89	10	60	75	0	18	5	0.99
11471--11536	25	2.6	27	79	13	77	75	0	16	7	1.02
11508--11579	21	3.4	21	74	14	60	75	0	16	8	1.04
13223--13580	49	7.3	49	77	11	296	27	12	12	47	1.77
15596--15622	10	2.7	10	100	0	54	22	11	18	48	1.79
16194--16345	78	1.9	78	85	0	205	49	6	19	25	1.72
23811--23840	15	2.0	15	93	0	51	80	0	10	10	0.92
24434--24493	22	2.7	22	89	0	93	40	28	15	16	1.89
24725--25072	34	10.5	34	71	12	154	36	18	15	29	1.92
25178--25323	66	2.2	66	84	4	179	36	19	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25215--25454	33	7.3	33	71	7	148	37	20	13	29	1.91
25702--25772	21	3.3	21	81	14	92	83	9	7	0	0.82
26068--26118	21	2.4	22	75	24	56	64	5	0	29	1.17
26188--26230	15	2.8	15	82	3	50	79	9	2	9	1.03
26187--26230	23	1.9	23	81	9	54	79	9	2	9	1.02
26617--26657	21	2.0	21	90	0	64	63	4	29	2	1.28
27658--27695	3	12.7	3	94	0	67	65	0	2	31	1.06
28064--28207	13	11.2	13	68	16	52	55	23	4	15	1.60
28068--28133	26	2.5	27	73	4	64	57	25	0	16	1.39
28117--28215	26	3.9	25	77	6	83	54	23	8	14	1.66
28130--28194	13	5.2	12	78	12	60	53	20	9	16	1.70
28204--28254	19	2.7	19	74	14	52	45	17	11	25	1.83
29859--29912	19	2.9	19	81	13	67	53	11	7	27	1.63
29869--29907	17	2.4	17	83	16	55	58	10	5	25	1.51
29901--29991	32	2.8	32	96	0	164	58	13	0	28	1.36
29997--30249	41	6.2	41	91	1	332	49	12	7	30	1.68
30028--30502	41	11.6	42	85	4	361	51	11	5	31	1.62
30067--30476	180	2.3	182	85	4	533	51	11	5	30	1.62
30075--30499	21	20.7	22	70	20	225	51	11	5	30	1.61
31065--31102	19	2.0	20	94	5	69	10	7	2	78	1.04
31431--31747	42	7.1	43	71	11	192	39	19	13	28	1.89
31431--31704	143	1.9	142	88	2	415	39	19	13	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31474--31675	100	2.0	100	83	3	255	39	21	12	26	1.89
31574--31747	84	2.1	85	87	3	253	38	18	13	29	1.89
33219--33259	14	2.8	15	85	14	59	0	9	12	78	0.98
36988--38600	546	3.0	546	98	0	3109	23	18	15	42	1.88
39804--39869	13	5.1	13	71	14	55	57	7	12	22	1.60
41108--41180	19	3.5	21	83	14	89	54	10	4	30	1.54
41217--41644	20	20.8	20	70	16	270	51	12	5	30	1.62
41216--41644	41	10.4	41	81	7	449	51	12	5	30	1.62
42271--42313	20	2.2	20	82	0	50	79	4	2	13	1.00
47149--47201	23	2.3	23	79	20	58	79	3	15	1	0.96
55751--55835	39	2.2	39	81	8	93	68	8	11	11	1.40
57171--57217	18	2.7	18	80	6	53	31	10	6	51	1.62
60955--60999	23	1.9	24	86	4	65	22	6	4	66	1.33
67798--67840	22	2.0	22	95	0	77	46	9	16	27	1.77
71838--71868	16	1.9	16	100	0	62	51	9	6	32	1.60
73544--73578	16	2.2	16	94	0	61	31	14	11	42	1.81
74941--75027	21	4.2	20	84	8	77	32	29	25	12	1.93
74964--75027	21	3.1	21	90	2	94	32	28	26	12	1.93
75285--75320	10	3.6	10	88	0	54	52	11	27	8	1.65

Tables:   1

The End!