genome.fa.s322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168147.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29382

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135--530	180	2.2	181	86	4	550	39	9	8	42	1.68
1570--1614	16	2.7	16	86	6	54	42	2	2	53	1.25
1961--1998	19	2.0	19	89	0	58	57	0	0	42	0.98
2469--2499	3	10.3	3	92	0	53	67	0	0	32	0.91
5513--5777	133	2.0	132	83	8	338	35	8	10	45	1.70
5915--6886	181	5.5	179	74	8	709	40	8	10	40	1.70
7110--7227	13	9.2	13	68	18	61	48	2	3	45	1.32
7156--7239	39	2.2	38	83	12	100	47	1	2	48	1.22
7326--7375	22	2.3	22	82	6	57	50	2	4	44	1.32
7346--7389	18	2.6	17	82	13	56	52	0	2	45	1.13
7343--7397	22	2.5	21	85	5	65	49	0	1	49	1.11
8131--8168	19	2.0	19	89	0	58	57	0	0	42	0.98
8482--8894	183	2.3	181	77	8	426	39	8	11	40	1.72
9149--9174	12	2.2	12	100	0	52	53	0	0	46	1.00
9182--10122	181	5.1	182	76	8	692	42	9	8	39	1.68
9611--9643	18	1.9	17	88	11	50	36	9	6	48	1.60
10478--10535	25	2.3	26	85	5	68	53	1	0	44	1.10
10455--10625	91	1.9	89	80	11	195	51	1	2	45	1.21
10695--10729	16	2.2	16	89	0	52	42	0	2	54	1.15
10864--11920	181	5.9	179	74	10	765	40	7	9	42	1.66
10982--11878	347	2.5	349	77	9	846	40	7	9	43	1.65
11917--11982	33	2.0	35	85	8	93	45	4	0	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11939--11987	16	3.0	16	75	3	53	44	6	0	48	1.27
12109--12148	13	3.1	14	82	17	59	52	0	0	47	1.00
12108--12152	20	2.2	20	88	7	65	55	0	0	44	0.99
12306--12348	12	3.6	11	81	12	50	37	0	2	60	1.10
12574--12623	25	2.0	24	84	3	64	40	2	2	56	1.22
12660--12705	16	2.8	16	93	6	74	50	0	0	50	1.00
12779--12810	14	2.4	14	94	5	57	50	0	0	50	1.00
13036--13070	17	2.1	17	89	10	54	54	0	2	42	1.15
13052--13101	25	2.0	25	88	7	75	40	0	0	60	0.97
13401--14074	181	3.7	179	78	7	637	41	8	9	40	1.68
15476--15512	19	1.9	19	89	10	58	54	0	0	45	1.00
15598--16356	181	4.2	174	76	8	526	40	9	7	42	1.65
16025--16057	18	1.9	17	88	11	50	42	6	3	48	1.43
15756--16262	177	2.8	177	79	5	468	41	9	7	41	1.66
16830--16870	21	1.9	22	85	5	57	58	2	0	39	1.11
17217--17284	22	3.2	21	73	10	66	47	0	1	51	1.09
17446--17478	18	1.9	17	88	11	50	36	9	6	48	1.60
18130--18171	13	3.2	13	75	18	50	59	4	0	35	1.19
18124--18191	27	2.4	28	73	11	68	57	4	1	36	1.28
18177--18232	26	2.1	27	83	9	71	53	0	1	44	1.11
18515--18586	13	5.5	13	72	18	60	52	1	0	45	1.09
20032--20100	19	3.9	18	77	9	63	43	2	8	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20695--20742	23	2.1	23	84	7	62	47	0	4	47	1.21
21625--21669	22	2.1	21	91	4	72	42	4	2	51	1.34
21838--21905	35	1.9	35	82	11	86	48	2	1	47	1.26
21869--21930	27	2.3	28	86	10	85	41	3	3	51	1.34
22002--22054	18	3.0	18	75	10	56	49	1	0	49	1.12
22009--22058	17	2.9	17	80	13	57	50	2	0	48	1.12
22004--22089	40	2.3	35	79	15	86	48	1	1	48	1.16
22441--22483	17	2.6	17	85	3	52	51	0	0	48	1.00
22485--22542	26	2.3	26	82	8	66	48	0	1	50	1.11
22440--22582	61	2.3	64	80	14	149	47	2	2	48	1.25
22981--23049	36	2.0	34	88	5	102	40	5	1	52	1.34
24812--24857	23	2.0	23	86	4	65	50	4	8	36	1.53
24572--24947	180	2.1	179	79	6	411	39	9	8	41	1.69
25670--25722	17	3.1	17	79	12	56	54	1	0	43	1.11
25672--25725	22	2.5	22	85	8	67	55	1	0	42	1.10
25802--25826	13	1.9	13	100	0	50	40	8	0	52	1.31
25999--26035	14	2.8	14	84	8	51	56	0	0	43	0.99
26181--26230	18	2.7	18	73	14	57	44	0	0	56	0.99
26181--26256	37	2.1	37	83	9	95	44	0	1	53	1.08
26815--26929	14	7.5	15	71	18	55	46	0	2	50	1.21
26982--27033	13	4.2	12	77	18	54	53	5	1	38	1.36
27026--27158	6	22.2	6	67	21	57	43	0	3	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28282--28322	12	3.2	12	86	10	55	56	0	0	43	0.99
28283--28330	25	1.9	25	83	8	62	52	0	0	47	1.00
28446--28493	16	3.0	16	80	14	55	56	0	4	39	1.19

Tables:   1

The End!