genome.fa.s324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168149.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29296

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956--1170	33	6.5	33	86	2	297	29	21	16	33	1.95
941--1183	33	7.4	33	84	2	274	31	20	15	32	1.94
1181--2004	33	25.1	33	81	7	827	30	21	14	33	1.93
1096--1269	86	2.0	86	91	2	278	31	20	16	31	1.94
1062--1302	119	2.0	119	91	1	394	31	19	15	33	1.93
2693--2757	23	2.9	22	79	4	85	29	24	21	24	1.99
2863--2906	22	2.0	23	86	4	63	22	13	25	38	1.91
2822--3369	179	3.1	177	84	2	672	26	20	16	36	1.94
2689--3063	154	2.4	152	77	8	407	25	20	18	35	1.95
2982--3085	22	4.7	21	77	11	84	25	23	20	30	1.98
3151--3264	23	5.0	23	89	3	151	30	22	17	28	1.97
3329--3375	23	2.0	23	87	0	67	31	21	14	31	1.94
3198--3484	133	2.2	133	79	4	330	27	20	14	36	1.92
3469--3541	22	3.4	21	75	11	67	31	26	13	28	1.94
3461--3522	21	2.8	23	76	9	76	30	29	12	27	1.93
3354--3632	152	1.8	152	84	6	384	26	21	15	36	1.93
3616--3683	23	3.0	23	89	2	102	23	25	23	27	2.00
3506--3782	133	2.1	134	88	4	409	24	22	18	35	1.96
3642--3843	110	1.8	110	89	0	314	24	20	16	38	1.93
4254--4298	24	1.9	23	95	0	72	20	37	4	37	1.73
5566--5764	16	12.5	16	71	12	124	45	35	0	18	1.53
5570--5690	33	3.6	33	82	4	154	44	38	0	16	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7317--7359	2	22.0	2	85	4	61	48	2	0	48	1.14
7456--7516	30	2.0	30	96	0	113	45	8	4	40	1.55
11629--11681	12	4.3	12	81	13	72	32	0	0	67	0.91
11623--11680	25	2.3	25	88	5	82	29	0	0	70	0.87
12210--12265	29	1.9	29	85	7	78	53	5	3	37	1.41
12837--12865	2	14.5	2	100	0	58	51	0	0	48	1.00
17386--17437	13	3.8	13	72	18	52	57	1	0	40	1.10
21824--21940	50	2.4	49	77	9	123	48	10	2	38	1.51
21831--21933	50	2.1	50	85	3	136	51	10	2	34	1.52
22405--22445	21	2.0	21	95	0	73	46	7	0	46	1.30
22546--22595	21	2.4	22	80	6	59	34	2	12	52	1.50
22701--22730	13	2.3	13	94	0	51	46	0	0	53	1.00
22880--22960	22	3.7	21	75	9	63	35	3	8	51	1.50
22980--23049	22	3.0	22	69	16	61	41	10	4	44	1.57
23015--23312	22	13.7	22	68	7	133	37	10	4	47	1.57
23152--23267	43	2.7	43	79	5	117	37	10	6	46	1.63
23205--23372	65	2.6	64	79	8	153	36	8	5	49	1.57
23736--23963	22	10.5	22	73	5	106	38	5	7	48	1.55
23764--23843	11	7.3	11	72	0	61	37	3	6	52	1.45
23905--23971	22	3.0	22	84	4	82	40	4	7	47	1.52
24041--24115	22	3.5	21	83	5	89	40	5	4	50	1.44
24291--24342	22	2.3	23	80	9	63	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24727--24776	23	2.2	23	89	7	75	38	2	0	60	1.09
25929--25985	22	2.6	23	77	8	64	36	8	5	49	1.57
26797--26821	10	2.5	10	100	0	50	68	8	0	24	1.16
26922--26997	29	2.5	31	87	12	113	65	6	0	27	1.17
27181--27213	17	1.9	17	93	0	57	42	0	0	57	0.98
27173--27343	26	6.4	25	68	17	78	32	2	3	61	1.25
27222--27294	18	4.0	18	72	10	58	27	4	4	64	1.30
27225--27318	38	2.6	36	77	11	93	30	3	4	61	1.31
27252--27383	54	2.5	52	78	9	124	34	1	5	59	1.29
29215--29253	20	2.0	20	89	0	60	58	2	10	28	1.44

Tables:   1

The End!