Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168153.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29123
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Found at i:594 original size:22 final size:22
Alignment explanation
Indices: 559--609 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
549 AAAAACTAAA
559 TAGAATT-ATTTCTTATATAAT
1 TAGAATTCATTTCTTATATAAT
580 TAGAATTCATTTCTTATATAAT
1 TAGAATTCATTTCTTATATAAT
*
602 TATAATTC
1 TAGAATTC
610 TAAAAACAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (22 bp):
TAGAATTCATTTCTTATATAAT
Found at i:4080 original size:21 final size:21
Alignment explanation
Indices: 4036--4098 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
4026 TATATATTTA
4036 ATTTTAATATTTAA-TTT--T
1 ATTTTAATATTTAATTTTAAT
4054 -TTTTAATATTTAATTTTAAT
1 ATTTTAATATTTAATTTTAAT
4074 ATTTTAATATTTAATTTTAAT
1 ATTTTAATATTTAATTTTAAT
4095 ATTT
1 ATTT
4099 CTTTTTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.32
18 3 0.07
20 1 0.02
21 24 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTAATATTTAATTTTAAT
Found at i:4104 original size:13 final size:13
Alignment explanation
Indices: 4029--4098 Score: 85
Period size: 13 Copynumber: 5.5 Consensus size: 13
4019 ATCACAATAT
4029 ATATTTAATTTTA
1 ATATTTAATTTTA
4042 ATATTTAATTTT-
1 ATATTTAATTTTA
4054 -T-TTTAATATTTA
1 ATATTTAAT-TTTA
4066 AT-TTTAATATTTTA
1 ATATTT-A-ATTTTA
4080 ATATTTAATTTTA
1 ATATTTAATTTTA
4093 ATATTT
1 ATATTT
4099 CTTTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.12
11 4 0.08
13 28 0.55
14 8 0.16
15 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATATTTAATTTTA
Found at i:4292 original size:10 final size:10
Alignment explanation
Indices: 4277--4339 Score: 51
Period size: 10 Copynumber: 6.2 Consensus size: 10
4267 GTCCATTACT
4277 TATTATATTA
1 TATTATATTA
4287 TATTATACTTA
1 TATTATA-TTA
4298 T-TTATACTTA
1 TATTATA-TTA
*
4308 TACTTATTTTA
1 TA-TTATATTA
4319 TACTTAT-TTA
1 TA-TTATATTA
*
4329 TACT-TATTA
1 TATTATATTA
4338 TA
1 TA
4340 ATAATTTATA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 22 0.47
11 14 0.30
12 4 0.09
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (10 bp):
TATTATATTA
Found at i:4319 original size:21 final size:21
Alignment explanation
Indices: 4280--4336 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
4270 CATTACTTAT
*
4280 TATATTATA-TTATACTTAT-T
1 TATATTATACTTAT-TTTATAT
4300 TATACTTATACTTATTTTATACT
1 TATA-TTATACTTATTTTATA-T
4323 TAT-TTATACTTATT
1 TATATTATACTTATT
4337 ATAATAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
20 4 0.12
21 20 0.62
22 4 0.12
23 4 0.12
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (21 bp):
TATATTATACTTATTTTATAT
Found at i:4319 original size:27 final size:26
Alignment explanation
Indices: 4279--4335 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
4269 CCATTACTTA
4279 TTATATTATATTATACTTATTTATAC
1 TTATATTATATTATACTTATTTATAC
*
4305 TTATACTTATTTTATACTTATTTATAC
1 TTATA-TTATATTATACTTATTTATAC
4332 TTAT
1 TTAT
4336 TATAATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (26 bp):
TTATATTATATTATACTTATTTATAC
Found at i:4321 original size:11 final size:11
Alignment explanation
Indices: 4305--4336 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
4295 TTATTTATAC
4305 TTATACTTATT
1 TTATACTTATT
4316 TTATACTTA-T
1 TTATACTTATT
4326 TTATACTTATT
1 TTATACTTATT
4337 ATAATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (11 bp):
TTATACTTATT
Found at i:4335 original size:16 final size:16
Alignment explanation
Indices: 4279--4325 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
4269 CCATTACTTA
4279 TTATATTATA-TTATAC
1 TTAT-TTATACTTATAC
4295 TTATTTATACTTATAC
1 TTATTTATACTTATAC
4311 TTATTTTATACTTAT
1 TTA-TTTATACTTAT
4326 TTATACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.17
16 13 0.45
17 11 0.38
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (16 bp):
TTATTTATACTTATAC
Found at i:4362 original size:10 final size:10
Alignment explanation
Indices: 4349--4420 Score: 76
Period size: 10 Copynumber: 6.8 Consensus size: 10
4339 AATAATTTAT
4349 AATAAGTATA
1 AATAAGTATA
4359 AATAAGTATAA
1 AATAAGTAT-A
4370 AATAAGTATA
1 AATAAGTATA
4380 AATAAGTATAA
1 AATAAGTAT-A
4391 GTATATAAGTATA
1 --A-ATAAGTATA
4404 ATATAA-TAT-
1 A-ATAAGTATA
4413 AATAAGTA
1 AATAAGTA
4421 ATGGACAACC
Statistics
Matches: 56, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
8 4 0.07
9 3 0.05
10 22 0.39
11 17 0.30
13 2 0.04
14 8 0.14
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (10 bp):
AATAAGTATA
Found at i:4369 original size:6 final size:6
Alignment explanation
Indices: 4350--4414 Score: 54
Period size: 6 Copynumber: 11.7 Consensus size: 6
4340 ATAATTTATA
*
4350 ATAAGT ATAA-- ATAAGT ATAA-A ATAAGT ATAA-- ATAAGT ATAAGTAT
1 ATAAGT ATAAGT ATAAGT ATAAGT ATAAGT ATAAGT ATAAGT ATAAG--T
4395 ATAAGT ATAA-T ATAA-T ATAA
1 ATAAGT ATAAGT ATAAGT ATAA
4415 TAAGTAATGG
Statistics
Matches: 50, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
4 8 0.16
5 14 0.28
6 22 0.44
8 6 0.12
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.32
Consensus pattern (6 bp):
ATAAGT
Found at i:4375 original size:21 final size:22
Alignment explanation
Indices: 4349--4414 Score: 91
Period size: 21 Copynumber: 3.0 Consensus size: 22
4339 AATAATTTAT
4349 AATAAGTATAAATAAGTATAA-
1 AATAAGTATAAATAAGTATAAG
4370 AATAAGTATAAATAAGTATAAG
1 AATAAGTATAAATAAGTATAAG
4392 TATATAAGTATAATATAA-TATAA
1 -A-ATAAGTATAA-ATAAGTATAA
4415 TAAGTAATGG
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
21 21 0.51
23 1 0.02
24 15 0.37
25 4 0.10
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (22 bp):
AATAAGTATAAATAAGTATAAG
Found at i:4611 original size:13 final size:13
Alignment explanation
Indices: 4595--4664 Score: 85
Period size: 13 Copynumber: 5.5 Consensus size: 13
4585 AAAAAAAAAG
4595 AAATATTAAAATT
1 AAATATTAAAATT
4608 AAATATTAAAATATT
1 AAATATT-AAA-ATT
4623 AAA-ATTAAATATT
1 AAATATTAAA-ATT
4636 AAA-A--AAAATT
1 AAATATTAAAATT
4646 AAATATTAAAATT
1 AAATATTAAAATT
4659 AAATAT
1 AAATAT
4665 ATATTGTGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
10 6 0.12
11 4 0.08
13 30 0.58
14 6 0.12
15 6 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATATTAAAATT
Found at i:4619 original size:21 final size:21
Alignment explanation
Indices: 4595--4657 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
4585 AAAAAAAAAG
4595 AAATATTAAAATTAAATATTA
1 AAATATTAAAATTAAATATTA
4616 AAATATTAAAATTAAATATT-
1 AAATATTAAAATTAAATATTA
4636 AAA-A--AAAATTAAATATTA
1 AAATATTAAAATTAAATATTA
4654 AAAT
1 AAAT
4658 TAAATATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
17 13 0.32
18 3 0.08
19 1 0.03
20 3 0.08
21 20 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATTAAAATTAAATATTA
Found at i:8122 original size:21 final size:23
Alignment explanation
Indices: 8074--8125 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
8064 GTTGTTTTTA
*
8074 GAATTATAATTATATAAGAAAAT
1 GAATTCTAATTATATAAGAAAAT
8097 GAATTCTAATTATATAAG-AAAT
1 GAATTCTAATTATATAAGAAAAT
8119 -AATTCTA
1 GAATTCTA
8126 TTTAGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 7 0.25
22 4 0.14
23 17 0.61
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (23 bp):
GAATTCTAATTATATAAGAAAAT
Found at i:9101 original size:15 final size:17
Alignment explanation
Indices: 9080--9122 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
9070 CAATATTCTT
9080 TTATTTTTTTTTA-TTC
1 TTATTTTTTTTTAGTTC
9096 -TATTTTTTATTTAGTTC
1 TTATTTTTT-TTTAGTTC
9113 TTATTTTTTT
1 TTATTTTTTT
9123 AATAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.33
16 4 0.17
17 4 0.17
18 8 0.33
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (17 bp):
TTATTTTTTTTTAGTTC
Found at i:9103 original size:12 final size:11
Alignment explanation
Indices: 9073--9122 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
9063 ATTGTATCAA
9073 TATTCTTTTATT
1 TATT-TTTTATT
9085 T-TTTTTTATT
1 TATTTTTTATT
9095 CTATTTTTTATT
1 -TATTTTTTATT
* *
9107 TAGTTCTTATT
1 TATTTTTTATT
9118 T-TTTT
1 TATTTT
9123 AATAATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 9 0.28
11 13 0.41
12 10 0.31
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (11 bp):
TATTTTTTATT
Found at i:9116 original size:23 final size:23
Alignment explanation
Indices: 9073--9117 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
9063 ATTGTATCAA
* *
9073 TATTCTTTTATTTTTTTTTATTC
1 TATTCTTTTATTTGTTCTTATTC
9096 TATT-TTTTATTTAGTTCTTATT
1 TATTCTTTTATTT-GTTCTTATT
9118 TTTTTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.76
Consensus pattern (23 bp):
TATTCTTTTATTTGTTCTTATTC
Found at i:9194 original size:25 final size:25
Alignment explanation
Indices: 9161--9212 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
9151 ATTATTTATT
*
9161 TTTTTAGTTTACCGTCTTCGAATGA
1 TTTTTAGTTTACAGTCTTCGAATGA
9186 TTTTTAGTTTACAGTCTTCGAATGA
1 TTTTTAGTTTACAGTCTTCGAATGA
9211 TT
1 TT
9213 AGGAGTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.50
Consensus pattern (25 bp):
TTTTTAGTTTACAGTCTTCGAATGA
Found at i:9219 original size:25 final size:25
Alignment explanation
Indices: 9166--9219 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
9156 TTATTTTTTT
* ***
9166 AGTTTACCGTCTTCGAATGATTTTT
1 AGTTTACAGTCTTCGAATGATTAGG
9191 AGTTTACAGTCTTCGAATGATTAGG
1 AGTTTACAGTCTTCGAATGATTAGG
9216 AGTT
1 AGTT
9220 GGATTTTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (25 bp):
AGTTTACAGTCTTCGAATGATTAGG
Found at i:9319 original size:15 final size:15
Alignment explanation
Indices: 9299--9348 Score: 73
Period size: 15 Copynumber: 3.1 Consensus size: 15
9289 CATAATGATT
9299 ATTTTAATATTGTTA
1 ATTTTAATATTGTTA
9314 ATTTTAATATTGTTGTTA
1 ATTTTAATA---TTGTTA
9332 ATTTTAATATTGTTA
1 ATTTTAATATTGTTA
9347 AT
1 AT
9349 ATTGTATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 17 0.53
18 15 0.47
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (15 bp):
ATTTTAATATTGTTA
Found at i:9331 original size:18 final size:18
Alignment explanation
Indices: 9308--9345 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9298 TATTTTAATA
9308 TTGTTAATTTTAATATTG
1 TTGTTAATTTTAATATTG
9326 TTGTTAATTTTAATATTG
1 TTGTTAATTTTAATATTG
9344 TT
1 TT
9346 AATATTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (18 bp):
TTGTTAATTTTAATATTG
Found at i:9367 original size:17 final size:17
Alignment explanation
Indices: 9347--9380 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9337 AATATTGTTA
*
9347 ATATTGTATTATTTATT
1 ATATTGTATGATTTATT
9364 ATATTGTATGATTTATT
1 ATATTGTATGATTTATT
9381 CATTACTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
ATATTGTATGATTTATT
Found at i:9404 original size:19 final size:19
Alignment explanation
Indices: 9382--9431 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
9372 TGATTTATTC
*
9382 ATTACTATATTTTTTAGTT
1 ATTACTATATTTTGTAGTT
*
9401 ATTACTATATTTTGTATTT
1 ATTACTATATTTTGTAGTT
9420 ATTACTATATTT
1 ATTACTATATTT
9432 CATTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (19 bp):
ATTACTATATTTTGTAGTT
Found at i:9449 original size:19 final size:19
Alignment explanation
Indices: 9415--9469 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
9405 CTATATTTTG
*
9415 TATTTATTACTATATTTCAT
1 TATTTATTTCT-TATTTCAT
*
9435 TATTTATTTCTTATTTTAT
1 TATTTATTTCTTATTTCAT
* *
9454 TAATTATTTATTATTT
1 TATTTATTTCTTATTT
9470 TCGTGTCGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 21 0.68
20 10 0.32
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTATTTCTTATTTCAT
Found at i:9450 original size:38 final size:38
Alignment explanation
Indices: 9377--9451 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
9367 TTGTATGATT
*
9377 TATTCATTACTATATTTTTTAGTTATTACTATATTTTG
1 TATTCATTACTATATTTATTAGTTATTACTATATTTTG
* * *
9415 TATTTATTACTATATTTCATTATTTATTTCT-TATTTT
1 TATTCATTACTATATTT-ATTAGTTATTACTATATTTT
9452 ATTAATTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 22 0.69
39 10 0.31
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.64
Consensus pattern (38 bp):
TATTCATTACTATATTTATTAGTTATTACTATATTTTG
Found at i:9508 original size:17 final size:18
Alignment explanation
Indices: 9482--9670 Score: 79
Period size: 17 Copynumber: 10.4 Consensus size: 18
9472 GTGTCGGTTC
*
9482 TATATATATTTA-TAAAT
1 TATATTTATTTATTAAAT
9499 TATATTTATTTATT--AT
1 TATATTTATTTATTAAAT
* * *
9515 T-TATGTA-TTATCACAGT
1 TATATTTATTTATTA-AAT
**
9532 TATAGATATTTATTTAAAT
1 TATATTTATTTA-TTAAAT
*
9551 TATATTTATATATTAAA-
1 TATATTTATTTATTAAAT
* **
9568 TATATTAAAATATTAAAT
1 TATATTTATTTATTAAAT
9586 TATATTTATATT-TTATATAT
1 TATATTTAT-TTATTA-A-AT
** *
9606 TAAATATATTAAAATATGAAAT
1 T--ATAT-TT-ATTTATTAAAT
*
9628 TATATTTATATATTAAA-
1 TATATTTATTTATTAAAT
* ** *
9645 TATATTAAAATATGAAAT
1 TATATTTATTTATTAAAT
9663 TATATTTA
1 TATATTTA
9671 AATAAATATC
Statistics
Matches: 130, Mismatches: 25, Indels: 33
0.69 0.13 0.18
Matches are distributed among these distances:
14 4 0.03
15 5 0.04
16 3 0.02
17 42 0.32
18 35 0.27
19 18 0.14
20 9 0.07
22 7 0.05
23 4 0.03
24 3 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (18 bp):
TATATTTATTTATTAAAT
Found at i:9564 original size:8 final size:8
Alignment explanation
Indices: 9551--9657 Score: 72
Period size: 8 Copynumber: 12.6 Consensus size: 8
9541 TTATTTAAAT
*
9551 TATATTTA
1 TATATTAA
9559 TATATTAAA
1 TATATT-AA
9568 TATATTAA
1 TATATTAA
*
9576 AATATTAAA
1 TATATT-AA
*
9585 TTATATTTA
1 -TATATTAA
*
9594 TAT-TTTA
1 TATATTAA
9601 TATATTAAA
1 TATATT-AA
9610 TATATTAA
1 TATATTAA
* *
9618 AATATGAAA
1 TATAT-TAA
*
9627 TTATATTTA
1 -TATATTAA
9636 TATATTAAA
1 TATATT-AA
9645 TATATTAA
1 TATATTAA
*
9653 AATAT
1 TATAT
9658 GAAATTATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
7 7 0.09
8 36 0.46
9 27 0.34
10 9 0.11
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.50
Consensus pattern (8 bp):
TATATTAA
Found at i:9581 original size:77 final size:76
Alignment explanation
Indices: 9512--9670 Score: 205
Period size: 77 Copynumber: 2.1 Consensus size: 76
9502 ATTTATTTAT
* * * *
9512 TATTTATGTATTATCACAGTTATAGATATT-TAT-TTAAATTATATTTATATATTAAATATATTA
1 TATTTATATATTAT-ACA-TTAAAGATATTAAATATGAAATTATATTTATATATTAAATATATTA
9575 AAATATTAAATTA
64 AAATATTAAATTA
* * *
9588 TATTTATATTTTATATATTAAATATATTAAAATATGAAATTATATTTATATATTAAATATATTAA
1 TATTTATATATTATACATTAAAGATATT-AAATATGAAATTATATTTATATATTAAATATATTAA
*
9653 AATATGAAATTA
65 AATATTAAATTA
9665 TATTTA
1 TATTTA
9671 AATAAATATC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
74 9 0.12
75 2 0.03
76 14 0.19
77 47 0.65
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (76 bp):
TATTTATATATTATACATTAAAGATATTAAATATGAAATTATATTTATATATTAAATATATTAAA
ATATTAAATTA
Found at i:9584 original size:35 final size:35
Alignment explanation
Indices: 9547--9670 Score: 176
Period size: 35 Copynumber: 3.3 Consensus size: 35
9537 ATATTTATTT
*
9547 AAATTATATTTATATATTAAATATATTAAAATATTAA
1 AAATTATATTTATATATTAAATATATTAAAATA-T-G
9584 ATTATATTTATATTTTATATATTAAATATATTAAAATATG
1 A--A-A-TTATA-TTTATATATTAAATATATTAAAATATG
9624 AAATTATATTTATATATTAAATATATTAAAATATG
1 AAATTATATTTATATATTAAATATATTAAAATATG
9659 AAATTATATTTA
1 AAATTATATTTA
9671 AATAAATATC
Statistics
Matches: 81, Mismatches: 1, Indels: 12
0.86 0.01 0.13
Matches are distributed among these distances:
35 39 0.48
36 5 0.06
37 2 0.02
38 1 0.01
39 1 0.01
40 2 0.02
41 6 0.07
42 25 0.31
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (35 bp):
AAATTATATTTATATATTAAATATATTAAAATATG
Found at i:9689 original size:4 final size:4
Alignment explanation
Indices: 9682--9809 Score: 85
Period size: 4 Copynumber: 32.2 Consensus size: 4
9672 ATAAATATCT
*
9682 ATAA AT-A ATATA AT-A ATAAA ATAA ACT-A ATAAA ATAA ACAA ATAA
1 ATAA ATAA ATA-A ATAA AT-AA ATAA A-TAA AT-AA ATAA ATAA ATAA
* *
9727 AT-A ATAA ATAA ATAA TTAAA ATAA ACT-A ATAAA ATAA ACAA ATAA AT-A
1 ATAA ATAA ATAA ATAA AT-AA ATAA A-TAA AT-AA ATAA ATAA ATAA ATAA
*
9775 AGAA ATAA AT-A ATAA ATAA AT-A ATACA AT-A ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA A
9810 AAAACAAAGC
Statistics
Matches: 99, Mismatches: 8, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
3 22 0.22
4 57 0.58
5 20 0.20
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:9704 original size:13 final size:13
Alignment explanation
Indices: 9695--9772 Score: 82
Period size: 13 Copynumber: 6.5 Consensus size: 13
9685 AATAATATAA
9695 TAATAAAATAAAC
1 TAATAAAATAAAC
9708 TAATAAAATAAAC
1 TAATAAAATAAAC
9721 -----AAATAAA-
1 TAATAAAATAAAC
9728 TAAT-AAATAAA-
1 TAATAAAATAAAC
9739 TAATTAAAATAAAC
1 TAA-TAAAATAAAC
9753 TAATAAAATAAAC
1 TAATAAAATAAAC
*
9766 AAATAAA
1 TAATAAA
9773 TAAGAAATAA
Statistics
Matches: 57, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
8 7 0.12
11 10 0.18
12 1 0.02
13 36 0.63
14 3 0.05
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (13 bp):
TAATAAAATAAAC
Found at i:9809 original size:45 final size:44
Alignment explanation
Indices: 9688--9805 Score: 186
Period size: 45 Copynumber: 2.7 Consensus size: 44
9678 ATCTATAAAT
*
9688 AATATAATAATAAAATAAACTAATAAAATAAACAAATAAATAATA
1 AATA-AATAATAAAATAAACTAATAAAATAAACAAATAAATAAGA
9733 AATAAATAATTAAAATAAACTAATAAAATAAACAAATAAATAAGA
1 AATAAATAA-TAAAATAAACTAATAAAATAAACAAATAAATAAGA
*
9778 AATAAATAAT-AAATAAA-TAATACAATAA
1 AATAAATAATAAAATAAACTAATAAAATAA
9806 TAAAAAAACA
Statistics
Matches: 70, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
42 10 0.14
43 7 0.10
44 6 0.09
45 47 0.67
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (44 bp):
AATAAATAATAAAATAAACTAATAAAATAAACAAATAAATAAGA
Found at i:11924 original size:30 final size:30
Alignment explanation
Indices: 11890--12204 Score: 585
Period size: 30 Copynumber: 10.3 Consensus size: 30
11880 AAATGGTGTT
11890 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
11920 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
11950 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
11980 CCATTGCATTGTCGTCAAATGGTGGTCTTCCATTG
1 -C----CATTGTCGTCAAATGGTGGTCTTCCATTG
12015 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12045 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12075 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12105 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12135 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12165 CCATTGTCGTCAAATGGTGGTCTTCCATTG
1 CCATTGTCGTCAAATGGTGGTCTTCCATTG
12195 CCATTGTCGT
1 CCATTGTCGT
12205 TAACTAGTCT
Statistics
Matches: 280, Mismatches: 0, Indels: 10
0.97 0.00 0.03
Matches are distributed among these distances:
30 249 0.89
31 1 0.00
34 1 0.00
35 29 0.10
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (30 bp):
CCATTGTCGTCAAATGGTGGTCTTCCATTG
Found at i:12245 original size:18 final size:18
Alignment explanation
Indices: 12218--12452 Score: 397
Period size: 18 Copynumber: 13.1 Consensus size: 18
12208 CTAGTCTCCA
*
12218 TTTTTTATTCACTATAGG
1 TTTTTCATTCACTATAGG
12236 TTTGTT-ATTCACTATAGG
1 TTT-TTCATTCACTATAGG
12254 TTTGTT-ATTCACTATAGG
1 TTT-TTCATTCACTATAGG
12272 TTTGTT-ATTCACTATAGG
1 TTT-TTCATTCACTATAGG
12290 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12308 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12326 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12344 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12362 TTTGTT-ATTCACTATAGG
1 TTT-TTCATTCACTATAGG
12380 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12398 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12416 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12434 TTTTTCATTCACTATAGG
1 TTTTTCATTCACTATAGG
12452 T
1 T
12453 CTCGATTCTG
Statistics
Matches: 213, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.02
18 205 0.96
19 4 0.02
ACGTcount: A:0.22, C:0.14, G:0.13, T:0.51
Consensus pattern (18 bp):
TTTTTCATTCACTATAGG
Found at i:12793 original size:18 final size:18
Alignment explanation
Indices: 12770--12807 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
12760 TTTTTTGCGC
12770 ATTGCATACGGCTTTACA
1 ATTGCATACGGCTTTACA
12788 ATTGCATACGGCTTTACA
1 ATTGCATACGGCTTTACA
12806 AT
1 AT
12808 GGAATTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (18 bp):
ATTGCATACGGCTTTACA
Found at i:14743 original size:78 final size:78
Alignment explanation
Indices: 14614--14782 Score: 320
Period size: 78 Copynumber: 2.2 Consensus size: 78
14604 AGTAAAAAGA
* *
14614 ATGTAAAATTATATTTCGCTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAATGGTC
1 ATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAATGGTC
14679 TTATCTTAATAAT
66 TTATCTTAATAAT
14692 ATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAATGGTC
1 ATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAATGGTC
14757 TTATCTTAATAAT
66 TTATCTTAATAAT
14770 ATGTAATATTATA
1 ATGTAATATTATA
14783 ATATGTAATA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 89 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (78 bp):
ATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAATGGTC
TTATCTTAATAAT
Found at i:14785 original size:15 final size:15
Alignment explanation
Indices: 14765--14797 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14755 TCTTATCTTA
14765 ATAATATGTAATATT
1 ATAATATGTAATATT
14780 ATAATATGTAATATT
1 ATAATATGTAATATT
14795 ATA
1 ATA
14798 TTTCACTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
ATAATATGTAATATT
Found at i:14878 original size:15 final size:15
Alignment explanation
Indices: 14858--14890 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14848 TCTTATCTTA
14858 ATAATATGTAATATT
1 ATAATATGTAATATT
14873 ATAATATGTAATATT
1 ATAATATGTAATATT
14888 ATA
1 ATA
14891 TTTCACTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
ATAATATGTAATATT
Found at i:14979 original size:93 final size:93
Alignment explanation
Indices: 14687--14963 Score: 554
Period size: 93 Copynumber: 3.0 Consensus size: 93
14677 TCTTATCTTA
14687 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
1 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
14752 TGGTCTTATCTTAATAATATGTAATATT
66 TGGTCTTATCTTAATAATATGTAATATT
14780 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
1 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
14845 TGGTCTTATCTTAATAATATGTAATATT
66 TGGTCTTATCTTAATAATATGTAATATT
14873 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
1 ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
14938 TGGTCTTATCTTAATAATATGTAATA
66 TGGTCTTATCTTAATAATATGTAATA
14964 ATGGTCTTAA
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 184 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.42
Consensus pattern (93 bp):
ATAATATGTAATATTATATTTCACTTTGATTGTGGAAGCGTAATACGTAATGTAATACGTAATAA
TGGTCTTATCTTAATAATATGTAATATT
Found at i:17363 original size:21 final size:20
Alignment explanation
Indices: 17338--17405 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 20
17328 TTCCATTATT
*
17338 ATATAATTATATAAATAATAT
1 ATATAATTATATAAAT-ATAA
17359 ATATAA--ATATAAATATAA
1 ATATAATTATATAAATATAA
*
17377 ATATAAATAATATAAATATAA
1 ATAT-AATTATATAAATATAA
17398 ATATAATT
1 ATATAATT
17406 TCAAGATCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.17
19 10 0.24
20 3 0.07
21 22 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATAATTATATAAATATAA
Found at i:17370 original size:6 final size:6
Alignment explanation
Indices: 17346--17403 Score: 77
Period size: 6 Copynumber: 10.0 Consensus size: 6
17336 TTATATAATT
*
17346 ATATAA ATAATAT ATATAA ATATAA ATATAA ATAT-A A-AT-A ATATAA
1 ATATAA AT-ATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
17392 ATATAA ATATAA
1 ATATAA ATATAA
17404 TTTCAAGATC
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 34 0.72
7 5 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAA
Found at i:17382 original size:27 final size:26
Alignment explanation
Indices: 17338--17403 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
17328 TTCCATTATT
*
17338 ATATAATTATATAAAT-AATATATATAA
1 ATATAAATATA-AAATAAATA-ATATAA
17365 ATATAAATATAAATATAAATAATATAA
1 ATATAAATATAAA-ATAAATAATATAA
17392 ATATAAATATAA
1 ATATAAATATAA
17404 TTTCAAGATC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
26 2 0.06
27 30 0.83
28 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
ATATAAATATAAAATAAATAATATAA
Found at i:19374 original size:23 final size:23
Alignment explanation
Indices: 19348--19393 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
19338 TATATTGTAA
19348 CCAATCATTTATCTTATTACTTG
1 CCAATCATTTATCTTATTACTTG
19371 CCAATCATTTATCTTATTACTTG
1 CCAATCATTTATCTTATTACTTG
19394 GGGGAGGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (23 bp):
CCAATCATTTATCTTATTACTTG
Found at i:24901 original size:21 final size:21
Alignment explanation
Indices: 24877--24920 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24867 GATTCTTTGC
24877 TTTGAGATTTTATCTGATCTA
1 TTTGAGATTTTATCTGATCTA
24898 TTTGAGATTTTATCTGATCTA
1 TTTGAGATTTTATCTGATCTA
24919 TT
1 TT
24921 ATAAATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.55
Consensus pattern (21 bp):
TTTGAGATTTTATCTGATCTA
Found at i:24928 original size:21 final size:21
Alignment explanation
Indices: 24877--24928 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
24867 GATTCTTTGC
*
24877 TTTGAGATTTTATCTGATCTA
1 TTTGAAATTTTATCTGATCTA
*
24898 TTTGAGATTTTATCTGATCTA
1 TTTGAAATTTTATCTGATCTA
24919 TTAT-AAATTT
1 TT-TGAAATTT
24929 GTATATCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.54
Consensus pattern (21 bp):
TTTGAAATTTTATCTGATCTA
Found at i:25124 original size:20 final size:20
Alignment explanation
Indices: 25099--25177 Score: 115
Period size: 20 Copynumber: 4.0 Consensus size: 20
25089 AACAATCAAA
25099 TAAAATGAAAATAAAATTTT
1 TAAAATGAAAATAAAATTTT
***
25119 TAAAATGAAAATAAAA-AAA
1 TAAAATGAAAATAAAATTTT
*
25138 AAAAATGAAAATAAAATTTT
1 TAAAATGAAAATAAAATTTT
25158 TAAAATGAAAATAAAATTTT
1 TAAAATGAAAATAAAATTTT
25178 CGCGGGCGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
19 15 0.30
20 35 0.70
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAAATGAAAATAAAATTTT
Found at i:25452 original size:24 final size:25
Alignment explanation
Indices: 25409--25472 Score: 103
Period size: 24 Copynumber: 2.6 Consensus size: 25
25399 TGGAGCCTTA
**
25409 ATTTAATATTTAATAAAAATTTAAT
1 ATTTAATAAATAATAAAAATTTAAT
25434 ATTTAATAAA-AATAAAAATTTAAT
1 ATTTAATAAATAATAAAAATTTAAT
25458 ATTTAATAAATAATA
1 ATTTAATAAATAATA
25473 TTTAATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 24 0.67
25 12 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTAATAAATAATAAAAATTTAAT
Found at i:25467 original size:18 final size:18
Alignment explanation
Indices: 25408--25446 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
25398 ATGGAGCCTT
25408 AATTTAATATTTAATAAA
1 AATTTAATATTTAATAAA
25426 AATTTAATATTTAATAAA
1 AATTTAATATTTAATAAA
25444 AAT
1 AAT
25447 AAAAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTTAATATTTAATAAA
Found at i:25473 original size:14 final size:14
Alignment explanation
Indices: 25454--25481 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25444 AATAAAAATT
25454 TAATATTTAATAAA
1 TAATATTTAATAAA
25468 TAATATTTAATAAA
1 TAATATTTAATAAA
25482 AAAATTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATATTTAATAAA
Found at i:25486 original size:18 final size:18
Alignment explanation
Indices: 25412--25486 Score: 73
Period size: 18 Copynumber: 4.1 Consensus size: 18
25402 AGCCTTAATT
**
25412 TAATATTTAATAAAAATT
1 TAATATTTAATAAAAAAA
25430 TAATATTTAATAAAAATAA
1 TAATATTTAATAAAAA-AA
*
25449 -AA-ATTTAATATTTAATAAA
1 TAATATTTAATA---AAAAAA
25468 TAATATTTAATAAAAAAA
1 TAATATTTAATAAAAAAA
25486 T
1 T
25487 TTGTTAATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
17 8 0.17
18 24 0.51
19 2 0.04
20 5 0.11
21 8 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATTTAATAAAAAAA
Found at i:27655 original size:15 final size:15
Alignment explanation
Indices: 27635--27664 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27625 TTTTTTAGTG
27635 AACGTGTCATTTTTT
1 AACGTGTCATTTTTT
27650 AACGTGTCATTTTTT
1 AACGTGTCATTTTTT
27665 TTTTTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (15 bp):
AACGTGTCATTTTTT
Found at i:28264 original size:14 final size:14
Alignment explanation
Indices: 28247--28277 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
28237 GATGGATATA
28247 TATCGTATAATTCT
1 TATCGTATAATTCT
28261 TATCGTATAATTCT
1 TATCGTATAATTCT
28275 TAT
1 TAT
28278 ATATATTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (14 bp):
TATCGTATAATTCT
Done.