Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168158.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28892
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Found at i:1716 original size:23 final size:23
Alignment explanation
Indices: 1690--1735 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1680 GTTCCTCCCC
1690 CAAGTAATAAGATAAATGATTGG
1 CAAGTAATAAGATAAATGATTGG
1713 CAAGTAATAAGATAAATGATTGG
1 CAAGTAATAAGATAAATGATTGG
1736 TTACAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.22, T:0.26
Consensus pattern (23 bp):
CAAGTAATAAGATAAATGATTGG
Found at i:3690 original size:6 final size:6
Alignment explanation
Indices: 3679--3736 Score: 77
Period size: 6 Copynumber: 10.0 Consensus size: 6
3669 GATCTTGAAA
3679 TTATAT TTATAT TTATA- -T-TAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
*
3724 ATATTAT TTATAT
1 TTA-TAT TTATAT
3737 AATTATATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
3 2 0.04
4 1 0.02
5 1 0.02
6 37 0.80
7 5 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTATAT
Found at i:3705 original size:21 final size:21
Alignment explanation
Indices: 3679--3745 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
3669 GATCTTGAAA
3679 TTATATTTATATTTATATTAT
1 TTATATTTATATTTATATTAT
3700 TTATATTTATATTTATATT-T
1 TTATATTTATATTTATATTAT
* * *
3720 ATATATAT-TATTTATATAAT
1 TTATATTTATATTTATATTAT
3740 TATATA
1 T-TATA
3746 ATAATGGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.22
20 8 0.20
21 23 0.57
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATATTTATATTTATATTAT
Found at i:3737 original size:27 final size:27
Alignment explanation
Indices: 3679--3736 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
3669 GATCTTGAAA
3679 TTATATTTATATTTATATTATTTATAT
1 TTATATTTATATTTATATTATTTATAT
*
3706 TTATATTTATATTTATA-TATAT-TAT
1 TTATATTTATATTTATATTATTTATAT
3731 TTATAT
1 TTATAT
3737 AATTATATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.30
26 4 0.13
27 17 0.57
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (27 bp):
TTATATTTATATTTATATTATTTATAT
Found at i:3742 original size:27 final size:29
Alignment explanation
Indices: 3677--3744 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 29
3667 GTGATCTTGA
3677 AATTATATTTATATTTATATTATTTATATTT
1 AATTATATTTATA-TTATATTATTTATA-TT
3708 ATATTTATATTTATA-TATATTATTTATA-T
1 A-A-TTATATTTATATTATATTATTTATATT
3737 AATTATAT
1 AATTATAT
3745 AATAATGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
27 6 0.17
28 1 0.03
29 2 0.06
31 14 0.40
32 1 0.03
33 11 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (29 bp):
AATTATATTTATATTATATTATTTATATT
Found at i:6218 original size:15 final size:15
Alignment explanation
Indices: 6198--6230 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
6188 CAAAGTGAAA
6198 TATAATATTACATAT
1 TATAATATTACATAT
6213 TATAATATTACATAT
1 TATAATATTACATAT
6228 TAT
1 TAT
6231 TAAGATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATATTACATAT
Found at i:6297 original size:78 final size:78
Alignment explanation
Indices: 6213--6474 Score: 301
Period size: 78 Copynumber: 3.2 Consensus size: 78
6203 TATTACATAT
6213 TATAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCAC
1 TATAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCAC
6278 AATCAAAGTGAAA
66 AATCAAAGTGAAA
* * ** * *
6291 TATAATATTACATATTA-TAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTA
1 TATAATATTACATATTATTAAGA-TA-AGACCATT---AT--TA-C-GTATTAC--A-----TTA
6355 CGTATTACGCTTCCACAATCAAAGTGAAA
50 CGTATTACGCTTCCACAATCAAAGTGAAA
6384 TATAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCAC
1 TATAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCAC
*
6449 AATCAAAGCGAAA
66 AATCAAAGTGAAA
*
6462 TATAATTTTACAT
1 TATAATATTACAT
6475 TCTTTTTACT
Statistics
Matches: 153, Mismatches: 14, Indels: 34
0.76 0.07 0.17
Matches are distributed among these distances:
77 4 0.03
78 62 0.41
79 5 0.03
82 2 0.01
83 1 0.01
84 1 0.01
85 7 0.05
86 7 0.05
87 1 0.01
88 1 0.01
89 2 0.01
92 5 0.03
93 51 0.33
94 4 0.03
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (78 bp):
TATAATATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCAC
AATCAAAGTGAAA
Found at i:6311 original size:15 final size:15
Alignment explanation
Indices: 6291--6323 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
6281 CAAAGTGAAA
6291 TATAATATTACATAT
1 TATAATATTACATAT
6306 TATAATATTACATAT
1 TATAATATTACATAT
6321 TAT
1 TAT
6324 TAAGATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATATTACATAT
Found at i:6432 original size:93 final size:93
Alignment explanation
Indices: 6125--6401 Score: 554
Period size: 93 Copynumber: 3.0 Consensus size: 93
6115 TTAAGACCAT
6125 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
1 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
6190 AAGTGAAATATAATATTACATATTATAA
66 AAGTGAAATATAATATTACATATTATAA
6218 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
1 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
6283 AAGTGAAATATAATATTACATATTATAA
66 AAGTGAAATATAATATTACATATTATAA
6311 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
1 TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
6376 AAGTGAAATATAATATTACATATTAT
66 AAGTGAAATATAATATTACATATTAT
6402 TAAGATAAGA
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 184 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.37
Consensus pattern (93 bp):
TATTACATATTATTAAGATAAGACCATTATTACGTATTACATTACGTATTACGCTTCCACAATCA
AAGTGAAATATAATATTACATATTATAA
Found at i:8304 original size:18 final size:18
Alignment explanation
Indices: 8281--8318 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8271 AGAGAATTCC
8281 ATTGTAAAGCCGTATGCA
1 ATTGTAAAGCCGTATGCA
8299 ATTGTAAAGCCGTATGCA
1 ATTGTAAAGCCGTATGCA
8317 AT
1 AT
8319 GCGCAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (18 bp):
ATTGTAAAGCCGTATGCA
Found at i:8657 original size:18 final size:18
Alignment explanation
Indices: 8634--8860 Score: 348
Period size: 17 Copynumber: 13.1 Consensus size: 18
8624 CAGAATCGAG
8634 ACCTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8652 ACCTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8670 A-CTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8687 ACCTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8705 ACCTATAGTGAAT-AACAA
1 ACCTATAGTGAATGAA-AA
8723 A-CTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8740 ACCTATAGTGAATG-AAA
1 ACCTATAGTGAATGAAAA
8757 ACCTATAGTGAATGAAAA
1 ACCTATAGTGAATGAAAA
8775 A-CTATAGTGAATG-AAA
1 ACCTATAGTGAATGAAAA
*
8791 ACCTATAGTGAAT-ACAA
1 ACCTATAGTGAATGAAAA
8808 ACCTATAGTGAAT-AACAA
1 ACCTATAGTGAATGAA-AA
*
8826 ACCTATAGTGAAT-AACA
1 ACCTATAGTGAATGAAAA
8843 ACCTATAGTGAAT-AAAA
1 ACCTATAGTGAATGAAAA
8860 A
1 A
8861 ATGGAGACTA
Statistics
Matches: 197, Mismatches: 4, Indels: 17
0.90 0.02 0.08
Matches are distributed among these distances:
16 4 0.02
17 107 0.54
18 86 0.44
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (18 bp):
ACCTATAGTGAATGAAAA
Found at i:8682 original size:35 final size:35
Alignment explanation
Indices: 8636--8861 Score: 322
Period size: 35 Copynumber: 6.5 Consensus size: 35
8626 GAATCGAGAC
8636 CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
1 CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
8671 CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
1 CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
8706 CCTATAGTGAAT-AACAAA-CTATAGTGAATGAAAAA
1 -CTATAGTGAATGAA-AAACCTATAGTGAATGAAAAA
8741 CCTATAGTGAATG-AAAACCTATAGTGAATGAAAAA
1 -CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
*
8776 CTATAGTGAATG-AAAACCTATAGTGAAT-ACAAAC
1 CTATAGTGAATGAAAAACCTATAGTGAATGA-AAAA
*
8810 CTATAGTGAAT-AACAAACCTATAGTGAAT-AACAAC
1 CTATAGTGAATGAA-AAACCTATAGTGAATGAA-AAA
*
8845 CTATAGTGAATAAAAAA
1 CTATAGTGAATGAAAAA
8862 TGGAGACTAG
Statistics
Matches: 181, Mismatches: 1, Indels: 18
0.90 0.00 0.09
Matches are distributed among these distances:
33 1 0.01
34 47 0.26
35 117 0.65
36 16 0.09
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (35 bp):
CTATAGTGAATGAAAAACCTATAGTGAATGAAAAA
Found at i:8985 original size:30 final size:30
Alignment explanation
Indices: 8875--9174 Score: 530
Period size: 30 Copynumber: 10.3 Consensus size: 30
8865 AGACTAGTTA
8875 ACGAC-ATGGCAATGG-AGACCACCA--T-
1 ACGACAATGGCAATGGAAGACCACCATTTG
8900 ACGACAAT-GCAA--GAA-ACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
8926 ACGACAATGGCAATGGAAGACCA-CATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
8955 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
8985 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9015 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9045 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9075 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9105 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9135 ACGACAATGGCAATGGAAGACCACCATTTG
1 ACGACAATGGCAATGGAAGACCACCATTTG
9165 ACGACAATGG
1 ACGACAATGG
9175 AACACCATTT
Statistics
Matches: 265, Mismatches: 0, Indels: 15
0.95 0.00 0.05
Matches are distributed among these distances:
23 8 0.03
24 1 0.00
25 10 0.04
26 10 0.04
27 4 0.02
29 32 0.12
30 200 0.75
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (30 bp):
ACGACAATGGCAATGGAAGACCACCATTTG
Found at i:11309 original size:45 final size:44
Alignment explanation
Indices: 11263--11386 Score: 186
Period size: 45 Copynumber: 2.9 Consensus size: 44
11253 GTTTTTTTTA
* *
11263 TTATTGTATTA-TTTA-TTTATTATTTATTTCTTATTTATTTGT
1 TTATTTTATTAGTTTATTTTATTATTTATTTATTATTTATTTGT
11305 TTATTTTATTAGTTTATTTTAATTATTTATTTATTATTTATTTGT
1 TTATTTTATTAGTTTATTTT-ATTATTTATTTATTATTTATTTGT
11350 TTATTTTATTAGTTTATTTTATTA-TTA--TATTATTTAT
1 TTATTTTATTAGTTTATTTTATTATTTATTTATTATTTAT
11387 AGATATTTAT
Statistics
Matches: 77, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
41 10 0.13
42 10 0.13
43 7 0.09
44 7 0.09
45 43 0.56
ACGTcount: A:0.24, C:0.01, G:0.04, T:0.71
Consensus pattern (44 bp):
TTATTTTATTAGTTTATTTTATTATTTATTTATTATTTATTTGT
Found at i:11380 original size:13 final size:13
Alignment explanation
Indices: 11296--11373 Score: 82
Period size: 13 Copynumber: 6.5 Consensus size: 13
11286 TTATTTCTTA
*
11296 TTTATTTGTTTAT
1 TTTATTAGTTTAT
11309 TTTATTAGTTTAT
1 TTTATTAGTTTAT
11322 TTTAATTA-TTTA-
1 TTT-ATTAGTTTAT
11334 TTTATTA-TTTA-
1 TTTATTAGTTTAT
11345 --T-TT-GTTTAT
1 TTTATTAGTTTAT
11354 TTTATTAGTTTAT
1 TTTATTAGTTTAT
11367 TTTATTA
1 TTTATTA
11374 TTATATTATT
Statistics
Matches: 57, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
8 6 0.11
9 1 0.02
11 9 0.16
12 5 0.09
13 32 0.56
14 4 0.07
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (13 bp):
TTTATTAGTTTAT
Found at i:11399 original size:4 final size:4
Alignment explanation
Indices: 11259--11386 Score: 85
Period size: 4 Copynumber: 32.2 Consensus size: 4
11249 CTTTGTTTTT
* *
11259 TTTA -TTA TTGTA -TTA TTTA TTTA -TTA TTTA TTT- CTTA TTTA TTTG
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
11304 TTTA TTT- TATTA GTTTA TTTTA ATTA TTTA TTTA -TTA TTTA TTTG TTTA
1 TTTA TTTA T-TTA -TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
11353 TTT- TATTA GTTTA TTT- TATTA -TTA TATTA TTTA T
1 TTTA T-TTA -TTTA TTTA T-TTA TTTA T-TTA TTTA T
11387 AGATATTTAT
Statistics
Matches: 99, Mismatches: 9, Indels: 32
0.71 0.06 0.23
Matches are distributed among these distances:
3 19 0.19
4 62 0.63
5 16 0.16
6 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.04, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:11437 original size:35 final size:35
Alignment explanation
Indices: 11398--11521 Score: 176
Period size: 35 Copynumber: 3.3 Consensus size: 35
11388 GATATTTATT
11398 TAAATATAATTTCATATTTTAATATATTTAATATA
1 TAAATATAATTTCATATTTTAATATATTTAATATA
11433 TAAATATAATTTCATATTTTAATATATTTAATATATAAAATA
1 TAAATATAATTTCATATTTTAATATA-TT--TA-AT---ATA
*
11475 TAAATATAATTTAATATTTTAATATATTTAATATA
1 TAAATATAATTTCATATTTTAATATATTTAATATA
11510 TAAATATAATTT
1 TAAATATAATTT
11522 AAATAAATAT
Statistics
Matches: 81, Mismatches: 1, Indels: 14
0.84 0.01 0.15
Matches are distributed among these distances:
35 41 0.51
36 2 0.02
38 4 0.05
39 4 0.05
41 2 0.02
42 28 0.35
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (35 bp):
TAAATATAATTTCATATTTTAATATATTTAATATA
Found at i:11492 original size:42 final size:42
Alignment explanation
Indices: 11411--11518 Score: 166
Period size: 42 Copynumber: 2.6 Consensus size: 42
11401 ATATAATTTC
* *
11411 ATAT-TTTAATATATTTAATATATAAATATAATTTCATATTTTA
1 ATATATTTAATATA--TAAAATATAAATATAATTTAATATTTTA
11454 ATATATTTAATATATAAAATATAAATATAATTTAATATTTTA
1 ATATATTTAATATATAAAATATAAATATAATTTAATATTTTA
11496 ATATATTTAATATAT-AAATATAA
1 ATATATTTAATATATAAAATATAA
11519 TTTAAATAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
41 8 0.13
42 41 0.66
43 4 0.06
44 9 0.15
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (42 bp):
ATATATTTAATATATAAAATATAAATATAATTTAATATTTTA
Found at i:11568 original size:77 final size:77
Alignment explanation
Indices: 11411--11568 Score: 187
Period size: 77 Copynumber: 2.1 Consensus size: 77
11401 ATATAATTTC
* * * *
11411 ATATTTTAATATATTTAATATATAAATATAATTTCATATTTTAATATATTTAATATATAAAATAT
1 ATATTTTAATATATTTAATATATAAATATAATTTCATATATAAATATATATAATATATAAAACAT
* *
11476 AAATATAATTTA
66 AAATATAAATAA
* * *
11488 ATATTTTAATATATTTAATATATAAATATAATTT-A-A-ATAAATATCTATAACTGTGATAATAC
1 ATATTTTAATATATTTAATATATAAATATAATTTCATATATAAATATATATAA-TAT-ATAAAAC
11550 ATAAATAATAAATAA
64 ATAAAT-ATAAATAA
11565 ATAT
1 ATAT
11569 AATTTATAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
74 10 0.14
75 3 0.04
76 12 0.17
77 44 0.64
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (77 bp):
ATATTTTAATATATTTAATATATAAATATAATTTCATATATAAATATATATAATATATAAAACAT
AAATATAAATAA
Found at i:11577 original size:17 final size:18
Alignment explanation
Indices: 11398--11586 Score: 79
Period size: 17 Copynumber: 10.4 Consensus size: 18
11388 GATATTTATT
* **
11398 TAAATATAATTTCATATT
1 TAAATATAATTTAATAAA
* *
11416 TTAATAT-ATTTAATATA
1 TAAATATAATTTAATAAA
*
11433 TAAATATAATTTCATATTTTAA
1 TAAATATAATTT-A-A--TAAA
* *
11455 TATATTTAATATATAA-AATA
1 TAAATATAAT-T-TAATAA-A
**
11475 TAAATATAATTTAATATT
1 TAAATATAATTTAATAAA
* *
11493 TTAATAT-ATTTAATATA
1 TAAATATAATTTAATAAA
11510 TAAATATAATTTAAATAAA
1 TAAATATAATTT-AATAAA
** * *
11529 TATCTATAACTGTGAT-AA
1 TAAATATAA-TTTAATAAA
*
11547 TACATA-AA--TAATAAA
1 TAAATATAATTTAATAAA
11562 TAAATATAATTT-ATAAA
1 TAAATATAATTTAATAAA
*
11579 TATATATA
1 TAAATATA
11587 GAACCGACAC
Statistics
Matches: 129, Mismatches: 26, Indels: 33
0.69 0.14 0.18
Matches are distributed among these distances:
14 3 0.02
15 7 0.05
16 2 0.02
17 43 0.33
18 30 0.23
19 18 0.14
20 12 0.09
22 11 0.09
23 2 0.02
24 1 0.01
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (18 bp):
TAAATATAATTTAATAAA
Found at i:11622 original size:19 final size:19
Alignment explanation
Indices: 11598--11653 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
11588 AACCGACACG
* *
11598 AAAATAATAAATAATTAAT
1 AAAATAAGAAATAAATAAT
11617 AAAATAAGAAATAAATAAT
1 AAAATAAGAAATAAATAAT
* *
11636 GAAATATAGTAATAAATA
1 AAAATA-AGAAATAAATA
11654 CAAAATATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 22 0.69
20 10 0.31
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAATAAGAAATAAATAAT
Found at i:11659 original size:19 final size:18
Alignment explanation
Indices: 11617--11692 Score: 91
Period size: 19 Copynumber: 4.1 Consensus size: 18
11607 AATAATTAAT
*
11617 AAAATA-AGAAATAAATA
1 AAAATATAGTAATAAATA
11634 ATGAAATATAGTAATAAATA
1 A--AAATATAGTAATAAATA
*
11654 CAAAATATAGTAATAACTA
1 -AAAATATAGTAATAAATA
*
11673 AAAATATAGTAATGAATA
1 AAAATATAGTAATAAATA
11691 AA
1 AA
11693 TCATACAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
17 1 0.02
18 18 0.35
19 21 0.41
20 10 0.20
21 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.25
Consensus pattern (18 bp):
AAAATATAGTAATAAATA
Found at i:11678 original size:18 final size:19
Alignment explanation
Indices: 11637--11690 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 19
11627 ATAAATAATG
11637 AAATATAGTAATAAATACA
1 AAATATAGTAATAAATACA
*
11656 AAATATAGTAATAACTA-A
1 AAATATAGTAATAAATACA
*
11674 AAATATAGTAATGAATA
1 AAATATAGTAATAAATA
11691 AATCATACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
18 16 0.50
19 16 0.50
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (19 bp):
AAATATAGTAATAAATACA
Found at i:11709 original size:17 final size:17
Alignment explanation
Indices: 11687--11720 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11677 TATAGTAATG
*
11687 AATAAATCATACAATAT
1 AATAAATAATACAATAT
11704 AATAAATAATACAATAT
1 AATAAATAATACAATAT
11721 TAACAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAATAATACAATAT
Found at i:11739 original size:15 final size:15
Alignment explanation
Indices: 11719--11768 Score: 73
Period size: 15 Copynumber: 3.1 Consensus size: 15
11709 ATAATACAAT
11719 ATTAACAATATTAAA
1 ATTAACAATATTAAA
11734 ATTAACAACAATATTAAA
1 ATT---AACAATATTAAA
11752 ATTAACAATATTAAA
1 ATTAACAATATTAAA
11767 AT
1 AT
11769 AATCATTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 17 0.53
18 15 0.47
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (15 bp):
ATTAACAATATTAAA
Found at i:11745 original size:18 final size:18
Alignment explanation
Indices: 11722--11759 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
11712 ATACAATATT
11722 AACAATATTAAAATTAAC
1 AACAATATTAAAATTAAC
11740 AACAATATTAAAATTAAC
1 AACAATATTAAAATTAAC
11758 AA
1 AA
11760 TATTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (18 bp):
AACAATATTAAAATTAAC
Found at i:11883 original size:25 final size:25
Alignment explanation
Indices: 11855--11906 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
11845 TCCAACTCCT
*
11855 AATCATTCGAAGACTGTAAACTAAA
1 AATCATTCGAAGACGGTAAACTAAA
11880 AATCATTCGAAGACGGTAAACTAAA
1 AATCATTCGAAGACGGTAAACTAAA
11905 AA
1 AA
11907 AATAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.15, G:0.13, T:0.21
Consensus pattern (25 bp):
AATCATTCGAAGACGGTAAACTAAA
Found at i:11974 original size:17 final size:16
Alignment explanation
Indices: 11945--11993 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
11935 AAAAATTATT
11945 AAAAAAATAAGAACTAA
1 AAAAAAATAAGAA-TAA
11962 ATAAAAAAT-AGAATAA
1 A-AAAAAATAAGAATAA
*
11978 AAAAAATAAAAGAATA
1 AAAAAA-ATAAGAATA
11994 TTGATACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.18
16 5 0.18
17 11 0.39
18 7 0.25
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (16 bp):
AAAAAAATAAGAATAA
Found at i:12976 original size:22 final size:22
Alignment explanation
Indices: 12941--12991 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
12931 AAAAACTAAA
12941 TAGAATT-ATTTCTTATATAAT
1 TAGAATTCATTTCTTATATAAT
12962 TAGAATTCATTTCTTATATAAT
1 TAGAATTCATTTCTTATATAAT
*
12984 TATAATTC
1 TAGAATTC
12992 TAAAAACAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (22 bp):
TAGAATTCATTTCTTATATAAT
Found at i:16456 original size:21 final size:21
Alignment explanation
Indices: 16412--16474 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
16402 TATATATTTA
16412 ATTTTAATATTTAA-TTT--T
1 ATTTTAATATTTAATTTTAAT
16430 -TTTTAATATTTAATTTTAAT
1 ATTTTAATATTTAATTTTAAT
16450 ATTTTAATATTTAATTTTAAT
1 ATTTTAATATTTAATTTTAAT
16471 ATTT
1 ATTT
16475 CTTTTTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.32
18 3 0.07
20 1 0.02
21 24 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTAATATTTAATTTTAAT
Found at i:16480 original size:13 final size:13
Alignment explanation
Indices: 16405--16474 Score: 85
Period size: 13 Copynumber: 5.5 Consensus size: 13
16395 ATCACAATAT
16405 ATATTTAATTTTA
1 ATATTTAATTTTA
16418 ATATTTAATTTT-
1 ATATTTAATTTTA
16430 -T-TTTAATATTTA
1 ATATTTAAT-TTTA
16442 AT-TTTAATATTTTA
1 ATATTT-A-ATTTTA
16456 ATATTTAATTTTA
1 ATATTTAATTTTA
16469 ATATTT
1 ATATTT
16475 CTTTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.12
11 4 0.08
13 28 0.55
14 8 0.16
15 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATATTTAATTTTA
Found at i:16668 original size:10 final size:10
Alignment explanation
Indices: 16653--16730 Score: 63
Period size: 10 Copynumber: 7.6 Consensus size: 10
16643 GTCCATTACT
16653 TATTATATTA
1 TATTATATTA
16663 TATTATACTTA
1 TATTATA-TTA
16674 T-TTATACTTA
1 TATTATA-TTA
*
16684 TACTTATTTTA
1 TA-TTATATTA
16695 TACTTAT-TTA
1 TA-TTATATTA
*
16705 TACTTATTTTA
1 TA-TTATATTA
*
16716 TACT-TATTA
1 TATTATATTA
16725 TATTAT
1 TATTAT
16731 CCTTATTACT
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
9 7 0.12
10 29 0.49
11 19 0.32
12 4 0.07
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (10 bp):
TATTATATTA
Found at i:16695 original size:27 final size:26
Alignment explanation
Indices: 16655--16722 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 26
16645 CCATTACTTA
16655 TTATATTATATTATACTTATTTATAC
1 TTATATTATATTATACTTATTTATAC
*
16681 TTATACTTATTTTATACTTATTTATAC
1 TTATA-TTATATTATACTTATTTATAC
*
16708 TTATTTTATACTTAT
1 TTATATTATA-TTAT
16723 TATATTATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.24
27 28 0.76
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (26 bp):
TTATATTATATTATACTTATTTATAC
Found at i:16697 original size:11 final size:11
Alignment explanation
Indices: 16681--16723 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
16671 TTATTTATAC
16681 TTATACTTATT
1 TTATACTTATT
16692 TTATACTTA-T
1 TTATACTTATT
16702 TTATACTTATT
1 TTATACTTATT
16713 TTATACTTATT
1 TTATACTTATT
16724 ATATTATCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (11 bp):
TTATACTTATT
Found at i:16736 original size:20 final size:21
Alignment explanation
Indices: 16721--16778 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
16711 TTTTATACTT
*
16721 ATTATATTATCCTTATTACTT
1 ATTATATTATCTTTATTACTT
**
16742 ATTCGATTA-CTTTATTACTT
1 ATTATATTATCTTTATTACTT
*
16762 ATTCTATTATCTATTAT
1 ATTATATTATCT-TTAT
16779 AATCTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 18 0.58
21 9 0.29
22 4 0.13
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATATTATCTTTATTACTT
Found at i:16740 original size:21 final size:21
Alignment explanation
Indices: 16651--16772 Score: 73
Period size: 21 Copynumber: 6.0 Consensus size: 21
16641 TTGTCCATTA
*
16651 CTTATTA--TATTATATTATA
1 CTTATTACTTATTATATTATC
16670 CTTATT--TATACTTATACTTAT-
1 CTTATTACT-TA-TTATA-TTATC
*
16691 TTTA-TACTTATTTATACTTAT-
1 CTTATTACTTA-TTATA-TTATC
*
16712 TTTA-TACTTATTATATTATC
1 CTTATTACTTATTATATTATC
**
16732 CTTATTACTTATTCGATTA-C
1 CTTATTACTTATTATATTATC
* *
16752 TTTATTACTTATTCTATTATC
1 CTTATTACTTATTATATTATC
16773 TATTATAATC
Statistics
Matches: 87, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
19 10 0.11
20 29 0.33
21 43 0.49
22 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.01, T:0.58
Consensus pattern (21 bp):
CTTATTACTTATTATATTATC
Found at i:16743 original size:27 final size:24
Alignment explanation
Indices: 16653--16737 Score: 95
Period size: 21 Copynumber: 3.5 Consensus size: 24
16643 GTCCATTACT
* *
16653 TATTATATTATATTATACTTATTTA
1 TATTATCTTATTTTATACTTA-TTA
16678 TACTTATACTTATTTTATACTTATT-
1 TA-TTAT-CTTATTTTATACTTATTA
16703 TA-TA-CTTATTTTATACTTATTA
1 TATTATCTTATTTTATACTTATTA
16725 TATTATCCTTATT
1 TATTAT-CTTATT
16738 ACTTATTCGA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
21 17 0.33
22 2 0.04
23 4 0.08
25 10 0.19
26 6 0.12
27 13 0.25
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTATCTTATTTTATACTTATTA
Found at i:16786 original size:17 final size:17
Alignment explanation
Indices: 16764--16797 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
16754 TATTACTTAT
16764 TCTATTATCTATTATAA
1 TCTATTATCTATTATAA
16781 TCTATTATCTATTATAA
1 TCTATTATCTATTATAA
16798 GTAAATCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (17 bp):
TCTATTATCTATTATAA
Found at i:21396 original size:22 final size:22
Alignment explanation
Indices: 21369--21454 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
21359 TATAATTCGT
21369 ATATTATACTAAGTATATCTAA
1 ATATTATACTAAGTATATCTAA
*
21391 ATATTATACTAAGTATATC--G
1 ATATTATACTAAGTATATCTAA
21411 A-A--ATACTAAGTATATCTAA
1 ATATTATACTAAGTATATCTAA
21430 ATATTATACTAAGTATATCTAA
1 ATATTATACTAAGTATATCTAA
21452 ATA
1 ATA
21455 CTAAGTATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
17 14 0.25
19 2 0.04
20 2 0.04
22 39 0.68
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (22 bp):
ATATTATACTAAGTATATCTAA
Found at i:21418 original size:17 final size:17
Alignment explanation
Indices: 21396--21485 Score: 126
Period size: 17 Copynumber: 5.0 Consensus size: 17
21386 TCTAAATATT
*
21396 ATACTAAGTATATCGAA
1 ATACTAAGTATATCTAA
21413 ATACTAAGTATATCTAAATA
1 ATACTAAGTATATCT--A-A
21433 TTATACTAAGTATATCTAA
1 --ATACTAAGTATATCTAA
21452 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
21469 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
21486 GCGAGTATAT
Statistics
Matches: 67, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
17 48 0.72
19 2 0.03
20 2 0.03
22 15 0.22
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.36
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:21426 original size:39 final size:39
Alignment explanation
Indices: 21374--21471 Score: 187
Period size: 39 Copynumber: 2.5 Consensus size: 39
21364 TTCGTATATT
21374 ATACTAAGTATATCTAAATATTATACTAAGTATATCGAA
1 ATACTAAGTATATCTAAATATTATACTAAGTATATCGAA
*
21413 ATACTAAGTATATCTAAATATTATACTAAGTATATCTAA
1 ATACTAAGTATATCTAAATATTATACTAAGTATATCGAA
21452 ATACTAAGTATATCTAAATA
1 ATACTAAGTATATCTAAATA
21472 CTAAGTATAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (39 bp):
ATACTAAGTATATCTAAATATTATACTAAGTATATCGAA
Found at i:21729 original size:22 final size:22
Alignment explanation
Indices: 21701--21744 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
21691 AATTTAATAA
21701 AGAAAGAGTTTATTACAAATTG
1 AGAAAGAGTTTATTACAAATTG
21723 AGAAAGAGTTTATTACAAATTG
1 AGAAAGAGTTTATTACAAATTG
21745 TCGAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (22 bp):
AGAAAGAGTTTATTACAAATTG
Found at i:22671 original size:36 final size:36
Alignment explanation
Indices: 22624--22735 Score: 197
Period size: 36 Copynumber: 3.1 Consensus size: 36
22614 TTTATAGGGC
22624 TCTTCGTCATACTCAAACGGATCAGAATCAATACCA
1 TCTTCGTCATACTCAAACGGATCAGAATCAATACCA
*
22660 TCTTCGTCATACTCAAACGGATAAGAATCAATACCA
1 TCTTCGTCATACTCAAACGGATCAGAATCAATACCA
* *
22696 TCTTCGTCATACTGAAATGGATCAGAATCAATACCA
1 TCTTCGTCATACTCAAACGGATCAGAATCAATACCA
22732 TCTT
1 TCTT
22736 TATCTTTGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 72 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.28
Consensus pattern (36 bp):
TCTTCGTCATACTCAAACGGATCAGAATCAATACCA
Found at i:22754 original size:42 final size:43
Alignment explanation
Indices: 22695--22927 Score: 186
Period size: 42 Copynumber: 5.4 Consensus size: 43
22685 AATCAATACC
* *
22695 ATCTTCGTCATACTGAAATGGATCAGAATCAATAC-CATCTTT
1 ATCTTCGTCAAACTGAAATGGATCATAATCAATACTCATCTTT
*
22737 ATCTTTGTCAAACTGAAATGGATCATAATCAATACCATCTTTATCTTT
1 ATCTTCGTCAAACTGAAATGGATCATAATCAATA-C-TC---ATCTTT
* * ** * ** * *
22785 ATCTTTGTCAAACTGAACTTTATCTTTGTCAA-ACTGAACTTT
1 ATCTTCGTCAAACTGAAATGGATCATAATCAATACTCATCTTT
* * ** * ** * *
22827 ATCTTTGTCAAACTGAACTTTATCTTTGTC-ATACTGAACTTT
1 ATCTTCGTCAAACTGAAATGGATCATAATCAATACTCATCTTT
* *
22869 ATCTTCGTCATACTGAAATGGATCAGAATCAATAC-CATCTTT
1 ATCTTCGTCAAACTGAAATGGATCATAATCAATACTCATCTTT
22911 ATCTTCGTCAAACTGAA
1 ATCTTCGTCAAACTGAA
22928 CTTTATCTTT
Statistics
Matches: 160, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 118 0.74
43 5 0.03
45 2 0.01
46 1 0.01
47 1 0.01
48 32 0.20
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.38
Consensus pattern (43 bp):
ATCTTCGTCAAACTGAAATGGATCATAATCAATACTCATCTTT
Found at i:22807 original size:21 final size:21
Alignment explanation
Indices: 22781--23179 Score: 354
Period size: 21 Copynumber: 19.0 Consensus size: 21
22771 CCATCTTTAT
22781 CTTTATCTTTGTCAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
22802 CTTTATCTTTGTCAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
22823 CTTTATCTTTGTCAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
*
22844 CTTTATCTTTGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* *
22865 CTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* ** **** * *
22886 ATGGATCAGAATCAATAC-CAT
1 CTTTATCTTTGTCAA-ACTGAA
*
22907 CTTTATCTTCGTCAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
*
22928 CTTTATCTTTGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* *
22949 CTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* *
22970 CTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* ** **** * *
22991 ATGGATCAGAATCAAGAC-CAT
1 CTTTATCTTTGTCAA-ACTGAA
*
23012 CTTTATCTTTGTTAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
* ** * ** * * *
23033 ATGGATCATAATTAATAC-CAT
1 CTTTATCTTTGTCAA-ACTGAA
*
23054 CTTTATCTTTGTTAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
*
23075 CTTTATCTTTGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
23096 CTTTATCTTTGTCAAACTGAA
1 CTTTATCTTTGTCAAACTGAA
*
23117 CTTTATCTTTGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* *
23138 CTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
* *
23159 CTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAA
23180 ATGGATCAGA
Statistics
Matches: 307, Mismatches: 65, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
20 6 0.02
21 295 0.96
22 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (21 bp):
CTTTATCTTTGTCAAACTGAA
Found at i:22922 original size:84 final size:84
Alignment explanation
Indices: 22695--22969 Score: 300
Period size: 84 Copynumber: 3.2 Consensus size: 84
22685 AATCAATACC
* **
22695 ATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTTATCTTTGTCAAACTGAAATGGAT
1 ATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTTATCTTTGTCAAACTGAACTTTAT
* ** * *
22760 CATAATCAATACCATCTTTATCTTT
66 CTTTGTC-AT---A-C-TGAACTTT
* * * ** **** * *
22785 ATCTTTGTCAAACTGAACTTTATCTTTGTCAA-ACTGAACTTTATCTTTGTCAAACTGAACTTTA
1 ATCTTCGTCATACTGAAATGGATCAGAATCAATAC-CATCTTTATCTTTGTCAAACTGAACTTTA
22849 TCTTTGTCATACTGAACTTT
65 TCTTTGTCATACTGAACTTT
*
22869 ATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTTATCTTCGTCAAACTGAACTTTAT
1 ATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTTATCTTTGTCAAACTGAACTTTAT
22934 CTTTGTCATACTGAACTTT
66 CTTTGTCATACTGAACTTT
22953 ATCTTCGTCATACTGAA
1 ATCTTCGTCATACTGAA
22970 CTTTATCTTC
Statistics
Matches: 152, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
84 92 0.61
85 3 0.02
86 1 0.01
89 4 0.03
90 52 0.34
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.39
Consensus pattern (84 bp):
ATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTTATCTTTGTCAAACTGAACTTTAT
CTTTGTCATACTGAACTTT
Found at i:22933 original size:105 final size:104
Alignment explanation
Indices: 22802--23179 Score: 452
Period size: 105 Copynumber: 3.6 Consensus size: 104
22792 TCAAACTGAA
*
22802 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
1 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTCGTCATACTGAACT
22867 TTATCTTCGTCATACTGAAATGGATCAGAATCAATACCAT
66 TTATCTTCGTCATACTGAAATGGATCAGAATCAA-ACCAT
* *
22907 CTTTATCTTCGTCAAACTGAACTTTATCTTTGTCATACTGAACTTTATCTTCGTCATACTGAACT
1 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTCGTCATACTGAACT
22972 TTATCTTCGTCATACTGAAATGGATCAGAATCAAGACCAT
66 TTATCTTCGTCATACTGAAATGGATCAGAATCAA-ACCAT
* * ** * ** * * * * * *
23012 CTTTATCTTTGTTAAACTGAAATGGATCATAATTAATAC-CATCTTTATCTTTGTTAAACTGAAC
1 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAA-ACTGAACTTTATCTTCGTCATACTGAAC
* * ** **** * *
23076 TTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAA
65 TTTATCTTCGTCATACTGAAATGGATCAGAATCAAAC-CAT
* * *
23117 CTTTATCTTTGTCATACTGAACTTTATCTTCGTCATACTGAACTTTATCTTCGTCATACTGAA
1 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTCGTCATACTGAA
23180 ATGGATCAGA
Statistics
Matches: 226, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
104 4 0.02
105 220 0.97
106 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (104 bp):
CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTCGTCATACTGAACT
TTATCTTCGTCATACTGAAATGGATCAGAATCAAACCAT
Found at i:22971 original size:147 final size:147
Alignment explanation
Indices: 22781--23201 Score: 619
Period size: 147 Copynumber: 2.9 Consensus size: 147
22771 CCATCTTTAT
* *
22781 CTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCAAACTGAACT
1 CTTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
*
22846 TTATCTTTGTCATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTT
66 TTATCTTAGTCATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTT
22911 ATCTTCGTCAAACTGAA
131 ATCTTCGTCAAACTGAA
* * * *
22928 CTTTATCTTTGTCATACTGAACTTTATCTTCGTCATACTGAACTTTATCTTCGTCATACTGAAAT
1 CTTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
** ** * * * * * * * * *
22993 GGATCAGAATCAAGAC-CATCTTTATCTTTGTTAAACTGAAATGGATCATAATTAATACCATCTT
66 TTATCTTAGTC-ATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTT
* *
23057 TATCTTTGTTAAACTGAA
130 TATCTTCGTCAAACTGAA
23075 CTTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
1 CTTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
*
23140 TTATCTTCGTCATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATC
66 TTATCTTAGTCATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATC
23202 CATATAAGGC
Statistics
Matches: 232, Mismatches: 40, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
146 3 0.01
147 226 0.97
148 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.40
Consensus pattern (147 bp):
CTTTATCTTTGTCATACTGAACTTTATCTTTGTCAAACTGAACTTTATCTTTGTCATACTGAACT
TTATCTTAGTCATACTGAACTTTATCTTCGTCATACTGAAATGGATCAGAATCAATACCATCTTT
ATCTTCGTCAAACTGAA
Found at i:23284 original size:24 final size:24
Alignment explanation
Indices: 23252--23443 Score: 384
Period size: 24 Copynumber: 8.0 Consensus size: 24
23242 TCAATACCAT
23252 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23276 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23300 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23324 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23348 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23372 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23396 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23420 CTTCGTCAGAACCATCTTCGTCAG
1 CTTCGTCAGAACCATCTTCGTCAG
23444 ACTGAAATGG
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 168 1.00
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (24 bp):
CTTCGTCAGAACCATCTTCGTCAG
Found at i:23475 original size:36 final size:36
Alignment explanation
Indices: 23430--23523 Score: 179
Period size: 36 Copynumber: 2.6 Consensus size: 36
23420 CTTCGTCAGA
23430 ACCATCTTCGTCAGACTGAAATGGATCATAATCAAT
1 ACCATCTTCGTCAGACTGAAATGGATCATAATCAAT
23466 ACCATCTTCGTCAGACTGAAATGGATCATAATCAAT
1 ACCATCTTCGTCAGACTGAAATGGATCATAATCAAT
*
23502 ACCATCTTCGTCATACTGAAAT
1 ACCATCTTCGTCAGACTGAAAT
23524 TCAATGGGAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (36 bp):
ACCATCTTCGTCAGACTGAAATGGATCATAATCAAT
Found at i:23779 original size:36 final size:36
Alignment explanation
Indices: 23739--23963 Score: 441
Period size: 36 Copynumber: 6.2 Consensus size: 36
23729 TAGGCCTTTC
23739 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
23775 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
23811 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
23847 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
23883 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
23919 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
1 TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
*
23955 TAAACCATT
1 TAAATCATT
23964 GTCTTCACTA
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
36 188 1.00
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (36 bp):
TAAATCATTACCATTTGCGCAACTTTCTTTTAGAGT
Found at i:24237 original size:18 final size:18
Alignment explanation
Indices: 24216--24251 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24206 ATAGAGAATA
24216 ATTATCCTGATTACTATC
1 ATTATCCTGATTACTATC
24234 ATTATCCTGATTACTATC
1 ATTATCCTGATTACTATC
24252 CCTAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (18 bp):
ATTATCCTGATTACTATC
Found at i:24860 original size:23 final size:23
Alignment explanation
Indices: 24834--24882 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
24824 ACCTTTTTCG
24834 TAAAATATCGTCTACTAATACAA
1 TAAAATATCGTCTACTAATACAA
*
24857 TAAAATCTCGTCTACTAATACAA
1 TAAAATATCGTCTACTAATACAA
24880 TAA
1 TAA
24883 GTTTCTATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
TAAAATATCGTCTACTAATACAA
Found at i:26664 original size:17 final size:17
Alignment explanation
Indices: 26642--26678 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26632 AATACATCAT
26642 TATTCTATATTCTTTCA
1 TATTCTATATTCTTTCA
26659 TATTCTATATTCTTTCA
1 TATTCTATATTCTTTCA
26676 TAT
1 TAT
26679 GTATGGCGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTCTATATTCTTTCA
Found at i:26787 original size:8 final size:8
Alignment explanation
Indices: 26764--26850 Score: 66
Period size: 7 Copynumber: 11.5 Consensus size: 8
26754 AATGAAATAG
26764 AAATATTAT
1 AAATA-TAT
26773 AAATATAT
1 AAATATAT
*
26781 AATTATAATT
1 AAATAT-A-T
26791 AGAAT-TAT
1 A-AATATAT
26799 AAATATA-
1 AAATATAT
26806 AAATATAT
1 AAATATAT
26814 --ATATA-
1 AAATATAT
26819 AAATATAT
1 AAATATAT
26827 -AA-AT-T
1 AAATATAT
26832 AAATATA-
1 AAATATAT
26839 AAATATAT
1 AAATATAT
26847 AAAT
1 AAAT
26851 TCAATAATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 25
0.70 0.02 0.27
Matches are distributed among these distances:
5 1 0.02
6 9 0.14
7 26 0.41
8 16 0.25
9 7 0.11
10 3 0.05
11 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (8 bp):
AAATATAT
Found at i:26811 original size:33 final size:34
Alignment explanation
Indices: 26764--26848 Score: 95
Period size: 33 Copynumber: 2.5 Consensus size: 34
26754 AATGAAATAG
* *
26764 AAATATTATAAATATATAAT-TATAAT-TAGAATTAT
1 AAATA-TA-AAATATATAATATAAAATATAGAAAT-T
*
26799 AAATATAAAATATAT-ATATAAAATATATAAATT
1 AAATATAAAATATATAATATAAAATATAGAAATT
26832 AAATATAAAATATATAA
1 AAATATAAAATATATAA
26849 ATTCAATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
32 2 0.05
33 29 0.66
34 8 0.18
35 5 0.11
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (34 bp):
AAATATAAAATATATAATATAAAATATAGAAATT
Found at i:26817 original size:13 final size:13
Alignment explanation
Indices: 26796--26838 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
26786 TAATTAGAAT
*
26796 TATAAATATAAAA
1 TATATATATAAAA
26809 TATATATATAAAA
1 TATATATATAAAA
* *
26822 TATATAAATTAAA
1 TATATATATAAAA
26835 TATA
1 TATA
26839 AAATATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TATATATATAAAA
Found at i:26825 original size:26 final size:27
Alignment explanation
Indices: 26770--26838 Score: 65
Period size: 26 Copynumber: 2.6 Consensus size: 27
26760 ATAGAAATAT
* *
26770 TATAAATATATAAT-TATAATTAGAAT
1 TATAAATATAAAATATATAATTAGAAA
26796 TATAAATATAAAATATAT-ATATA-AAA
1 TATAAATATAAAATATATAAT-TAGAAA
*
26822 TATATAA-ATTAAATATA
1 TATA-AATATAAAATATA
26839 AAATATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 30 0.81
27 7 0.19
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (27 bp):
TATAAATATAAAATATATAATTAGAAA
Found at i:26849 original size:20 final size:20
Alignment explanation
Indices: 26772--26856 Score: 88
Period size: 20 Copynumber: 4.3 Consensus size: 20
26762 AGAAATATTA
*
26772 TAAATATATAAT-TAT-AAT
1 TAAATATAAAATATATAAAT
26790 TAGAAT-TATAAATATA-AAAT
1 TA-AATATA-AAATATATAAAT
*
26810 ATATATATAAAATATATAAAT
1 -TAAATATAAAATATATAAAT
26831 TAAATATAAAATATATAAAT
1 TAAATATAAAATATATAAAT
*
26851 TCAATA
1 TAAATA
26857 ATAAGTCAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
18 4 0.07
19 6 0.11
20 38 0.68
21 8 0.14
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (20 bp):
TAAATATAAAATATATAAAT
Found at i:26964 original size:10 final size:10
Alignment explanation
Indices: 26922--27018 Score: 50
Period size: 10 Copynumber: 10.3 Consensus size: 10
26912 GTCAATAGTC
**
26922 AATAATAATC
1 AATAATAAGA
26932 AATAATAAG-
1 AATAATAAGA
26941 -ATAATAAG-
1 AATAATAAGA
26949 -ATAATAAGA
1 AATAATAAGA
*
26958 AATAAT-A-T
1 AATAATAAGA
26966 AA-AATAAGA
1 AATAATAAGA
26975 AATAATATA-A
1 AATAATA-AGA
* *
26985 ATTCAATAATA
1 AAT-AATAAGA
26996 AGA-AATAAGA
1 A-ATAATAAGA
*
27006 AAGAATAAGA
1 AATAATAAGA
27016 AAT
1 AAT
27019 TCACTCTTGA
Statistics
Matches: 70, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
7 3 0.04
8 19 0.27
9 4 0.06
10 37 0.53
11 7 0.10
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
AATAATAAGA
Found at i:26972 original size:61 final size:58
Alignment explanation
Indices: 26864--27005 Score: 139
Period size: 61 Copynumber: 2.4 Consensus size: 58
26854 ATAATAAGTC
* ** * * * *
26864 AATAGTCAATAATAAGATAATACTATAATAATATAAATTCAATAATAAGTCAATAGTCAAT
1 AATAATCAATAATAAGATAATAAGATAATAAGAAAAATTCAATAATAAG-AAATAAT--AT
26925 AATAATCAATAATAAGATAATAAGATAATAAGAAATAATAT-AA-AATAAGAAATAATAT
1 AATAATCAATAATAAGATAATAAGATAATAAGAAA-AAT-TCAATAATAAGAAATAATAT
*
26983 AA-ATTCAATAATAAGA-AATAAGA
1 AATAATCAATAATAAGATAATAAGA
27006 AAGAATAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
56 7 0.10
57 13 0.18
58 4 0.06
60 5 0.07
61 36 0.51
62 5 0.07
63 1 0.01
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (58 bp):
AATAATCAATAATAAGATAATAAGATAATAAGAAAAATTCAATAATAAGAAATAATAT
Found at i:26973 original size:17 final size:17
Alignment explanation
Indices: 26951--26985 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26941 ATAATAAGAT
26951 AATAAGAAATAATATAA
1 AATAAGAAATAATATAA
26968 AATAAGAAATAATATAA
1 AATAAGAAATAATATAA
26985 A
1 A
26986 TTCAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (17 bp):
AATAAGAAATAATATAA
Found at i:27002 original size:31 final size:32
Alignment explanation
Indices: 26958--27021 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
26948 GATAATAAGA
* *
26958 AATAATATAAAATAAGAAATAAT-ATAAATTC
1 AATAATATAAAATAAGAAAGAATAAGAAATTC
26989 AATAATA-AGAAATAAGAAAGAATAAGAAATTC
1 AATAATATA-AAATAAGAAAGAATAAGAAATTC
27021 A
1 A
27022 CTCTTGACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 1 0.03
31 20 0.69
32 8 0.28
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.23
Consensus pattern (32 bp):
AATAATATAAAATAAGAAAGAATAAGAAATTC
Found at i:27281 original size:11 final size:11
Alignment explanation
Indices: 27261--27302 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
27251 TATTGCCTAT
*
27261 AATGATAGACA
1 AATGAAAGACA
27272 AATGAAAGAC-
1 AATGAAAGACA
*
27282 AATGATAGACA
1 AATGAAAGACA
27293 AATGAAAGAC
1 AATGAAAGAC
27303 TCTCTCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.57, C:0.10, G:0.19, T:0.14
Consensus pattern (11 bp):
AATGAAAGACA
Found at i:27287 original size:21 final size:21
Alignment explanation
Indices: 27261--27302 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
27251 TATTGCCTAT
27261 AATGATAGACAAATGAAAGAC
1 AATGATAGACAAATGAAAGAC
27282 AATGATAGACAAATGAAAGAC
1 AATGATAGACAAATGAAAGAC
27303 TCTCTCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.10, G:0.19, T:0.14
Consensus pattern (21 bp):
AATGATAGACAAATGAAAGAC
Done.