Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 10 of 160
Found at i:3001203 original size:2 final size:2
Alignment explanation
Indices: 3001196--3001222 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3001186 TTTAGATCTT
3001196 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
3001223 CATAGCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3001986 original size:22 final size:22
Alignment explanation
Indices: 3001941--3002003 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
3001931 AATTTTTAAC
* * * *
3001941 AACTTAATAATAAATCAATGAT
1 AACTTAATAGTAAATTAGTAAT
3001963 AACTTAATAGTAAATTAGTAAT
1 AACTTAATAGTAAATTAGTAAT
*
3001985 AATTTAATAGTAAATTAGT
1 AACTTAATAGTAAATTAGT
3002004 TTCAATTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.37
Consensus pattern (22 bp):
AACTTAATAGTAAATTAGTAAT
Found at i:3005474 original size:147 final size:147
Alignment explanation
Indices: 3005198--3005474 Score: 385
Period size: 147 Copynumber: 1.9 Consensus size: 147
3005188 TTGTCGCATC
** * *
3005198 CATCAACTTTATGTACTCGAACGTCAGTATTAAAGTGAAAGGTTCAACTTAAATGCAGTGAATAT
1 CATCAACTCCATGTACTCGAACGTCAGTATCAAAATGAAAGGTTCAACTTAAATGCAGTGAATAT
* ** * *
3005263 ATGATAATATACAGATGCAAAACACTTAAGTGGATGATATATTGAGTCAACCTGAAGTGCAAGCT
66 ATGATAATATACAAAAACAAAACACTTAAGTAGATGATATATTGAGTCAACCTGAAGTACAAGCT
3005328 AGAGGAGCATTAACGAT
131 AGAGGAGCATTAACGAT
* * * *
3005345 CATCAACTCCATGTGCTCGAATGTCGGTATCAAAATGAAAGGTTCAACTTAGATGCA-TGGAATA
1 CATCAACTCCATGTACTCGAACGTCAGTATCAAAATGAAAGGTTCAACTTAAATGCAGT-GAATA
* * * *
3005409 TATGATAATATACAAAAACAAAACACTTAAGTAGATGATGTATTGAGTCAACTTGGAGTATAAGC
65 TATGATAATATACAAAAACAAAACACTTAAGTAGATGATATATTGAGTCAACCTGAAGTACAAGC
3005474 T
130 T
3005475 TAAGGACCAT
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
146 1 0.01
147 111 0.99
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (147 bp):
CATCAACTCCATGTACTCGAACGTCAGTATCAAAATGAAAGGTTCAACTTAAATGCAGTGAATAT
ATGATAATATACAAAAACAAAACACTTAAGTAGATGATATATTGAGTCAACCTGAAGTACAAGCT
AGAGGAGCATTAACGAT
Found at i:3005748 original size:200 final size:200
Alignment explanation
Indices: 3005405--3005784 Score: 584
Period size: 200 Copynumber: 1.9 Consensus size: 200
3005395 AGATGCATGG
* * *
3005405 AATATATGATAATATACAAAAACAAAACACTTAAGTAGATGATGTATTGAGTCAACTTGGAGTAT
1 AATATATGATAATATACAAAAACAAAACACCTAAGTAGATGATGTATTGAGTCAACTCGGAGTAC
*
3005470 AAGCTTAAGGACCATTGAGACAACCTGGGCCATAAAGTTGAGTGTTGTAACTTGACCTAAAAGCA
66 AAGCTTAAGGACCATTGAGACAACCTAGGCCATAAAGTTGAGTGTTGTAACTTGACCTAAAAGCA
* * *
3005535 TATTAGATATGTGAGGTTGCTTGGCCTAAAAAAGTTGTTGATAGAATTTATTCGTAACTTTGATG
131 TACTAGATATGTGAGGTTGCTTGGCCCAAAAAAGGTGTTGATAGAATTTATTCGTAACTTTGATG
3005600 TAGCA
196 TAGCA
*** * *
3005605 AATATATGATAATATACAAAAGTGAAACACCTAAGTGGATGATGTATTGAGTCAACTCGGAGTGC
1 AATATATGATAATATACAAAAACAAAACACCTAAGTAGATGATGTATTGAGTCAACTCGGAGTAC
* * *
3005670 AAGCTTGAAGGA-CATTGAGATAACCTAGGCCATAAGGTTGAGTGTTGTGACCTTG-CCTAAAAG
66 AAGCTT-AAGGACCATTGAGACAACCTAGGCCATAAAGTTGAGTGTTGT-AACTTGACCTAAAAG
*
3005733 CATACTAGATATGTGAGGTTGTTTGGCCCAAAAAAGGTGTTGATAGAATTTA
129 CATACTAGATATGTGAGGTTGCTTGGCCCAAAAAAGGTGTTGATAGAATTTA
3005785 CTCGCATAGG
Statistics
Matches: 162, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
200 152 0.94
201 10 0.06
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (200 bp):
AATATATGATAATATACAAAAACAAAACACCTAAGTAGATGATGTATTGAGTCAACTCGGAGTAC
AAGCTTAAGGACCATTGAGACAACCTAGGCCATAAAGTTGAGTGTTGTAACTTGACCTAAAAGCA
TACTAGATATGTGAGGTTGCTTGGCCCAAAAAAGGTGTTGATAGAATTTATTCGTAACTTTGATG
TAGCA
Found at i:3007880 original size:34 final size:34
Alignment explanation
Indices: 3007841--3008011 Score: 121
Period size: 34 Copynumber: 5.2 Consensus size: 34
3007831 TTTTTACATA
3007841 AAAGATTGTAACTTCATAAATGAAAAAAATTATG
1 AAAGATTGTAACTTCATAAATGAAAAAAATTATG
*** *
3007875 AAAGATTCG-AA-TT--TAAAT--TTTAAATTACATA
1 AAAGATT-GTAACTTCATAAATGAAAAAAATT--ATG
*
3007906 AAAGATTGTAACTTCATAAATGAAAAAAATTAAG
1 AAAGATTGTAACTTCATAAATGAAAAAAATTATG
* * *** *
3007940 AAAGATT-CAAATT--TAAAT--TTTAAATTACATA
1 AAAGATTGTAACTTCATAAATGAAAAAAATT--ATG
3007971 AAAGATTGTAACTTCATAAATGAAAAAAATTATG
1 AAAGATTGTAACTTCATAAATGAAAAAAATTATG
3008005 AAAGATT
1 AAAGATT
3008012 TGAATTTAAT
Statistics
Matches: 99, Mismatches: 22, Indels: 32
0.65 0.14 0.21
Matches are distributed among these distances:
29 10 0.10
30 1 0.01
31 29 0.29
32 6 0.06
33 6 0.06
34 36 0.36
35 1 0.01
36 10 0.10
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (34 bp):
AAAGATTGTAACTTCATAAATGAAAAAAATTATG
Found at i:3007903 original size:65 final size:65
Alignment explanation
Indices: 3007834--3008029 Score: 349
Period size: 65 Copynumber: 3.0 Consensus size: 65
3007824 ATAAATATTT
3007834 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTCGAATTTAAATTTTAAA
1 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTCGAATTTAAATTTTAAA
* *
3007899 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTAAGAAAGATTCAAATTTAAATTTTAAA
1 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTCGAATTTAAATTTTAAA
* *
3007964 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTTGAATTT-AATTTAAAA
1 TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTCGAATTTAAATTTTAAA
3008028 TT
1 TT
3008030 TATTAGATAT
Statistics
Matches: 125, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
64 10 0.08
65 115 0.92
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.34
Consensus pattern (65 bp):
TTACATAAAAGATTGTAACTTCATAAATGAAAAAAATTATGAAAGATTCGAATTTAAATTTTAAA
Found at i:3007910 original size:31 final size:31
Alignment explanation
Indices: 3007875--3007977 Score: 86
Period size: 31 Copynumber: 3.2 Consensus size: 31
3007865 AAAAATTATG
3007875 AAAGATTCGAATTTAAATTTTAAATTACATA
1 AAAGATTCGAATTTAAATTTTAAATTACATA
*** *
3007906 AAAGATT-GTAACTTCATAAATGAAAAAAATTA-A-G
1 AAAGATTCG-AA-TT--TAAAT--TTTAAATTACATA
*
3007940 AAAGATTCAAATTTAAATTTTAAATTACATA
1 AAAGATTCGAATTTAAATTTTAAATTACATA
3007971 AAAGATT
1 AAAGATT
3007978 GTAACTTCAT
Statistics
Matches: 54, Mismatches: 9, Indels: 18
0.67 0.11 0.22
Matches are distributed among these distances:
29 6 0.11
30 2 0.04
31 21 0.39
32 2 0.04
33 2 0.04
34 14 0.26
35 1 0.02
36 6 0.11
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (31 bp):
AAAGATTCGAATTTAAATTTTAAATTACATA
Found at i:3013799 original size:2 final size:2
Alignment explanation
Indices: 3013792--3013831 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
3013782 TATGTCCAAG
* *
3013792 AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3013832 TAGACAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3016644 original size:16 final size:17
Alignment explanation
Indices: 3016623--3016662 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
3016613 GATGCAGAAA
3016623 AATTTAAATTCCAA-AT
1 AATTTAAATTCCAATAT
*
3016639 AATTTAAATTCGAATAT
1 AATTTAAATTCCAATAT
3016656 AATTTAA
1 AATTTAA
3016663 TTTGATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (17 bp):
AATTTAAATTCCAATAT
Found at i:3017370 original size:65 final size:62
Alignment explanation
Indices: 3017300--3017447 Score: 147
Period size: 62 Copynumber: 2.4 Consensus size: 62
3017290 AGAAAACTTT
* * *
3017300 TTAAATAATTCTCTTATAAAAAATAGATAAAAAGATTATTGAAGGCATTTGTGGT-AGACAATGC
1 TTAAATAATTCTCTTATAAAAAAT--A-AAAAAGATTATTGAAGACATTTGTGATCAGA-AACGC
3017364 C
62 C
* * * * * * *
3017365 TTAAATAATCCCCTCATAAAAAATAAAGACGATTATTGAAGACATTTTTTATCAGAAACGCC
1 TTAAATAATTCTCTTATAAAAAATAAAAAAGATTATTGAAGACATTTGTGATCAGAAACGCC
*
3017427 TTTAATAATTCTCTTA-AAAAA
1 TTAAATAATTCTCTTATAAAAA
3017448 TTGTAGATGA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
61 5 0.07
62 38 0.56
63 4 0.06
65 21 0.31
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (62 bp):
TTAAATAATTCTCTTATAAAAAATAAAAAAGATTATTGAAGACATTTGTGATCAGAAACGCC
Found at i:3018034 original size:61 final size:62
Alignment explanation
Indices: 3017905--3018068 Score: 179
Period size: 61 Copynumber: 2.7 Consensus size: 62
3017895 TTTTATAAGC
* * * * *
3017905 AGATTATTCAAGATGTTTTTTGCCTAAAACGCCTTGAATAATTCTTCATAAAAATTTGGAGA
1 AGATTATTGAAGATGTTTTTTGCCTAAAACACCTTCAATAATTCTCCATAAAAATTTAGAGA
* * * * *
3017967 AGATTATTGAAGATGTTTTTTGCTTGAAATACCTTCAATAATTC-CCTTAAAAATTTATA-A
1 AGATTATTGAAGATGTTTTTTGCCTAAAACACCTTCAATAATTCTCCATAAAAATTTAGAGA
** * *
3018027 AGGATTATTGAAGGCGTTTTTTGTCAAAAACACCTTCAATAA
1 A-GATTATTGAAGATGTTTTTTGCCTAAAACACCTTCAATAA
3018069 ATCTTCTTAT
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
60 2 0.02
61 44 0.52
62 38 0.45
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (62 bp):
AGATTATTGAAGATGTTTTTTGCCTAAAACACCTTCAATAATTCTCCATAAAAATTTAGAGA
Found at i:3018711 original size:63 final size:62
Alignment explanation
Indices: 3018487--3018761 Score: 240
Period size: 63 Copynumber: 4.5 Consensus size: 62
3018477 ATTTAAGTTA
* * * * * * * *
3018487 TTTTTTGCCTGAAACACCTTTAATAATCACTCATAAAATATTGTAAGAAATTATTGAAGG--T
1 TTTTTTACCTAAAACGCCTTCAATAATCTCTCATAAAA-ATTGAAAGGAATTATTAAAGGCAT
* * * * *
3018548 TTTTTTAACCTGAAACGCCTTCAATAATCCCTCATAAAAA-TGGAAGGGATTATTGAAGGCAT
1 TTTTTT-ACCTAAAACGCCTTCAATAATCTCTCATAAAAATTGAAAGGAATTATTAAAGGCAT
* * * * *
3018610 TTTCTGT--C-AAAACGCTTTCAATAATCTCATCATCAAAATTTAAAGGGATTATTAAAGGCAT
1 TTT-TTTACCTAAAACGCCTTCAATAATCTC-TCATAAAAATTGAAAGGAATTATTAAAGGCAT
* * *
3018671 TTTTTTACCTAAAACGCCTTCAATAATCTTCTCATAAAAATTGAAAAGAATTATTAATGACAT
1 TTTTTTACCTAAAACGCCTTCAATAATC-TCTCATAAAAATTGAAAGGAATTATTAAAGGCAT
* * *
3018734 TTTTTTA-CAAAAATGCCTTGAATAATCT
1 TTTTTTACCTAAAACGCCTTCAATAATCT
3018762 TAAAAAAATA
Statistics
Matches: 178, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
59 17 0.10
60 27 0.15
61 30 0.17
62 50 0.28
63 52 0.29
64 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (62 bp):
TTTTTTACCTAAAACGCCTTCAATAATCTCTCATAAAAATTGAAAGGAATTATTAAAGGCAT
Found at i:3018775 original size:62 final size:63
Alignment explanation
Indices: 3018657--3018778 Score: 149
Period size: 62 Copynumber: 2.0 Consensus size: 63
3018647 ATTTAAAGGG
* * ** *
3018657 ATTATTAAAGGCATTTTTTTACCTAAAACGCCTTCAATAATCTTCTCATAAAAATTGAAAAGA
1 ATTATTAAAGACATTTTTTTACCAAAAACGCCTTCAATAATCTTCAAAAAAAAATTGAAAAGA
* * *
3018720 ATTATTAATGACATTTTTTTA-CAAAAATGCCTTGAATAATCTT-AAAAAAATAATTGAAA
1 ATTATTAAAGACATTTTTTTACCAAAAACGCCTTCAATAATCTTCAAAAAAA-AATTGAAA
3018779 GGGATTACCA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
61 4 0.08
62 27 0.54
63 19 0.38
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.36
Consensus pattern (63 bp):
ATTATTAAAGACATTTTTTTACCAAAAACGCCTTCAATAATCTTCAAAAAAAAATTGAAAAGA
Found at i:3020267 original size:105 final size:104
Alignment explanation
Indices: 3020086--3020293 Score: 380
Period size: 105 Copynumber: 2.0 Consensus size: 104
3020076 TTTTAGCGAC
*
3020086 ATTTATAAACGTCGTTAAATATGAAAAAAAAAACGTCACTAAAAATCTAATCCCTTAGTGAAATT
1 ATTTATAAACGTCGTTAAATATGAAAAAAAAAACGTCACTAAAAATCTAATCCCTTAATGAAATT
3020151 TTATTTGGTTGAATACAATATTCAAATTATTAATTGGAT
66 TTATTTGGTTGAATACAATATTCAAATTATTAATTGGAT
* *
3020190 ATTTATAAACGTCGTTAAATATGAAAAAAAAAAACGTCACTAAAAGTTTAATCCCTTAATGAAAT
1 ATTTATAAACGTCGTTAAATATG-AAAAAAAAAACGTCACTAAAAATCTAATCCCTTAATGAAAT
3020255 TTTATTTGGTTGAATACAATATTCAAATTATTAATTGGA
65 TTTATTTGGTTGAATACAATATTCAAATTATTAATTGGA
3020294 CAACTACTAC
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
104 23 0.23
105 77 0.77
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.36
Consensus pattern (104 bp):
ATTTATAAACGTCGTTAAATATGAAAAAAAAAACGTCACTAAAAATCTAATCCCTTAATGAAATT
TTATTTGGTTGAATACAATATTCAAATTATTAATTGGAT
Found at i:3028966 original size:20 final size:20
Alignment explanation
Indices: 3028941--3029016 Score: 61
Period size: 20 Copynumber: 3.8 Consensus size: 20
3028931 TTATATTATA
3028941 TAATTATATTATTTAAAAAT
1 TAATTATATTATTTAAAAAT
*
3028961 TAATTAT-TTATTATAAAATAA
1 TAATTATATTATT-TAAAA-AT
3028982 TAATTA-ATT-TATT-AAAAT
1 TAATTATATTAT-TTAAAAAT
* *
3029000 AAATATTTATTATTTAA
1 TAAT-TATATTATTTAA
3029017 TATTGTATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
18 4 0.09
19 9 0.20
20 19 0.43
21 12 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTATATTATTTAAAAAT
Found at i:3031522 original size:30 final size:30
Alignment explanation
Indices: 3031459--3031581 Score: 91
Period size: 30 Copynumber: 4.2 Consensus size: 30
3031449 TATTTTATTT
* *
3031459 AAAT-AATTTTTTATCCTTTT-A-TTGTACTG
1 AAATAAATTTTTTAT--TTTTAATTTATACTC
3031488 AAATAAATTTTTTATTTTTAATTTATACTC
1 AAATAAATTTTTTATTTTTAATTTATACTC
* * * *
3031518 AAATAAATTATTAAATTCTAATTTATA-TCC
1 AAATAAATTTTTTATTTTTAATTTATACT-C
*
3031548 AAAT-AA-GTTTT-TTTTTAATTTATACAT-
1 AAATAAATTTTTTATTTTTAATTTATAC-TC
3031575 AAATAAA
1 AAATAAA
3031582 CATTTAATAT
Statistics
Matches: 76, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
27 15 0.20
28 8 0.11
29 9 0.12
30 44 0.58
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.50
Consensus pattern (30 bp):
AAATAAATTTTTTATTTTTAATTTATACTC
Found at i:3031648 original size:30 final size:31
Alignment explanation
Indices: 3031621--3031697 Score: 87
Period size: 29 Copynumber: 2.7 Consensus size: 31
3031611 AATTAAAATT
3031621 TTATTTAGATACAAATTAAAAA-ATAAAAAA
1 TTATTTAGATACAAATTAAAAATATAAAAAA
*
3031651 TTATTT-GAATAC-AA-TAAAAATATAAAAAC
1 TTATTTAG-ATACAAATTAAAAATATAAAAAA
3031680 TTATTTA-A-A-AAATTAAAA
1 TTATTTAGATACAAATTAAAA
3031698 TAGTGCAAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
27 3 0.07
28 12 0.29
29 16 0.39
30 10 0.24
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (31 bp):
TTATTTAGATACAAATTAAAAATATAAAAAA
Found at i:3031768 original size:13 final size:13
Alignment explanation
Indices: 3031752--3031777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3031742 ATTTTTTCAC
3031752 TATTATTATTATT
1 TATTATTATTATT
3031765 TATTATTATTATT
1 TATTATTATTATT
3031778 ATACTGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:3033990 original size:17 final size:17
Alignment explanation
Indices: 3033960--3034025 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
3033950 AGATTTTTAT
3033960 AATAA-TTTAGTTATCGA
1 AATAATTTTA-TTATCGA
**
3033977 AATAATTTTATTATTAA
1 AATAATTTTATTATCGA
*
3033994 AATAATCTTATTACTCATGA
1 AATAATTTTATTA-TC--GA
*
3034014 AATAAATTTATT
1 AATAATTTTATT
3034026 TTATTTAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 22 0.58
18 5 0.13
20 11 0.29
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (17 bp):
AATAATTTTATTATCGA
Found at i:3034431 original size:16 final size:16
Alignment explanation
Indices: 3034410--3034447 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
3034400 AATGAATATT
3034410 AATTTAAAAATATAAA
1 AATTTAAAAATATAAA
*
3034426 AATTT-ATAATATAAA
1 AATTTAAAAATATAAA
3034441 ATATTTA
1 A-ATTTA
3034448 GAGTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTTAAAAATATAAA
Found at i:3034438 original size:15 final size:16
Alignment explanation
Indices: 3034418--3034447 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3034408 TTAATTTAAA
3034418 AATATAAAA-ATTTAT
1 AATATAAAATATTTAT
3034433 AATATAAAATATTTA
1 AATATAAAATATTTA
3034448 GAGTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATATAAAATATTTAT
Found at i:3043914 original size:14 final size:14
Alignment explanation
Indices: 3043895--3043943 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 14
3043885 TAATGAGACT
3043895 TTTTAATTTATCAA
1 TTTTAATTTATCAA
3043909 TTTTAATTT-T-AA
1 TTTTAATTTATCAA
* *
3043921 TTTTTATTTAATCAT
1 TTTTAATTT-ATCAA
3043936 TTTTAATT
1 TTTTAATT
3043944 AAAAACTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 10 0.34
13 1 0.03
14 10 0.34
15 8 0.28
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTAATTTATCAA
Found at i:3043945 original size:14 final size:14
Alignment explanation
Indices: 3043894--3043945 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
3043884 GTAATGAGAC
*
3043894 TTTTTAATTTATCA
1 TTTTTAATTAATCA
* * *
3043908 ATTTTAATT-TTAA
1 TTTTTAATTAATCA
*
3043921 TTTTTATTTAATCA
1 TTTTTAATTAATCA
3043935 TTTTTAATTAA
1 TTTTTAATTAA
3043946 AAACTTCATT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
13 9 0.31
14 20 0.69
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTTAATTAATCA
Found at i:3046109 original size:18 final size:19
Alignment explanation
Indices: 3046076--3046116 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
3046066 ATTTTTATTT
*
3046076 TATAAAAATTTTAAAAATA
1 TATAAAAATTTAAAAAATA
3046095 TATAAAAA-TTAAAAAATA
1 TATAAAAATTTAAAAAATA
3046113 TATA
1 TATA
3046117 TAATTCAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TATAAAAATTTAAAAAATA
Found at i:3046198 original size:11 final size:13
Alignment explanation
Indices: 3046174--3046198 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3046164 AAATTCGATC
3046174 TAAATTTAATATA
1 TAAATTTAATATA
3046187 TAAATTTAATAT
1 TAAATTTAATAT
3046199 CCAAACTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATTTAATATA
Found at i:3074661 original size:2 final size:2
Alignment explanation
Indices: 3074654--3074678 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3074644 CATTGACAAT
3074654 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3074679 GTTATAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3078561 original size:12 final size:12
Alignment explanation
Indices: 3078544--3078576 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
3078534 GTCGTCATTA
3078544 TTATTTATCGGT
1 TTATTTATCGGT
3078556 TTATTTATCGGT
1 TTATTTATCGGT
*
3078568 TTATATATC
1 TTATTTATC
3078577 AAGTCTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (12 bp):
TTATTTATCGGT
Found at i:3078847 original size:3 final size:3
Alignment explanation
Indices: 3078841--3078871 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
3078831 ATTATTTCAT
3078841 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
3078872 ATGTTGCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:3083400 original size:28 final size:28
Alignment explanation
Indices: 3083369--3083458 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 28
3083359 TTAAAAAAAC
3083369 TTTTCTATTATTTATTTTTTAAATAATT
1 TTTTCTATTATTTATTTTTTAAATAATT
* *
3083397 TTTTATA-TGTTTATTGTATTTAAATAAATT
1 TTTTCTATTATTTATT-T-TTTAAAT-AATT
* *
3083427 TTTTAC-ATTAATTTA-TATTTAAATAAGT
1 TTTT-CTATT-ATTTATTTTTTAAATAATT
3083455 TTTT
1 TTTT
3083459 ATTTTAAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
27 7 0.14
28 14 0.28
29 14 0.28
30 9 0.18
31 2 0.04
32 4 0.08
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTTCTATTATTTATTTTTTAAATAATT
Found at i:3083428 original size:29 final size:28
Alignment explanation
Indices: 3083378--3083460 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
3083368 CTTTTCTATT
* *
3083378 ATTTATTT-TTTAAATAATTTTTTATAT
1 ATTTATTTATTTAAATAAATTTTTATAC
*
3083405 GTTTATTGTATTTAAATAAATTTTT-TAC
1 ATTTATT-TATTTAAATAAATTTTTATAC
* *
3083433 ATTAATTTATATTTAAATAAGTTTTTAT
1 ATTTA-TT-TATTTAAATAAATTTTTAT
3083461 TTTAAATGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
27 6 0.13
28 6 0.13
29 32 0.71
30 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (28 bp):
ATTTATTTATTTAAATAAATTTTTATAC
Found at i:3088122 original size:17 final size:17
Alignment explanation
Indices: 3088102--3088157 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
3088092 AAAATATATT
3088102 AAAATTATTAATATTAA
1 AAAATTATTAATATTAA
* *
3088119 AAAATAATTACATTTTAA
1 AAAATTATTA-ATATTAA
3088137 TAATAA-TATTTAATATTAA
1 -AA-AATTA-TTAATATTAA
3088156 AA
1 AA
3088158 TATTTTATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
17 9 0.29
18 8 0.26
19 9 0.29
20 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATTATTAATATTAA
Found at i:3088289 original size:31 final size:31
Alignment explanation
Indices: 3088207--3088383 Score: 143
Period size: 31 Copynumber: 5.6 Consensus size: 31
3088197 TATTATTCTT
*
3088207 TATATTATTTATTAATATAATATAATATTATTTA-
1 TATATTATTTATTAATAT-AT-T-ATATTA-ATAG
* *
3088241 TAATAATATTTACTAATATATTATATTAATAG
1 T-ATATTATTTATTAATATATTATATTAATAG
* *
3088273 TCTATTATTTATTAATAATATTAT-TTATTCA-
1 TATATTATTTATTAAT-ATATTATATTAAT-AG
*
3088304 TATATTA-TTA-TAATAT-TTATTAATTAA-AT
1 TATATTATTTATTAATATATTA-T-ATTAATAG
*
3088333 TAATAGTATTTATTAATATATTATATTAATAG
1 T-ATATTATTTATTAATATATTATATTAATAG
*
3088365 TATATTATTTATTCATATA
1 TATATTATTTATTAATATA
3088384 ATATTATTTA
Statistics
Matches: 117, Mismatches: 13, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
27 3 0.03
28 4 0.03
29 5 0.04
30 11 0.09
31 48 0.41
32 24 0.21
33 4 0.03
34 3 0.03
35 15 0.13
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (31 bp):
TATATTATTTATTAATATATTATATTAATAG
Found at i:3088314 original size:18 final size:17
Alignment explanation
Indices: 3088209--3088444 Score: 79
Period size: 18 Copynumber: 14.6 Consensus size: 17
3088199 TTATTCTTTA
*
3088209 TATTATTTATTAATATAA
1 TATTATTTATT-ATATAT
* *
3088227 TATAATATTATT-TATAA
1 TATTAT-TTATTATATAT
* *
3088244 TAATATTTACTA-ATA-
1 TATTATTTATTATATAT
3088259 TATTA--TATTA-ATAGT
1 TATTATTTATTATATA-T
*
3088274 CTATTATTTATTA-ATAA
1 -TATTATTTATTATATAT
3088291 TATTATTTATTCATATAT
1 TATTATTTATT-ATATAT
3088309 TATTA--TA--ATAT-T
1 TATTATTTATTATATAT
* * *
3088321 TATTAATTA-AAT-TAA
1 TATTATTTATTATATAT
*
3088336 TAGTATTTATTA-ATA-
1 TATTATTTATTATATAT
3088351 TATTA--TATTA-ATAGT
1 TATTATTTATTATATA-T
*
3088366 ATATTATTTATTCATATAA
1 -TATTATTTATT-ATATAT
3088385 TATTATTTATTA-ATA-
1 TATTATTTATTATATAT
* *
3088400 TA-T-TGTAATATAATAT
1 TATTATTTATTAT-ATAT
3088416 TATTTATTTATTA-ATAT
1 TA-TTATTTATTATATAT
3088433 GATATTATTTAT
1 --TATTATTTAT
3088445 AAGTAAAATT
Statistics
Matches: 170, Mismatches: 18, Indels: 60
0.69 0.07 0.24
Matches are distributed among these distances:
12 6 0.04
13 24 0.14
14 4 0.02
15 22 0.13
16 38 0.22
17 15 0.09
18 45 0.26
19 13 0.08
20 3 0.02
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
TATTATTTATTATATAT
Found at i:3088417 original size:92 final size:91
Alignment explanation
Indices: 3088216--3088417 Score: 270
Period size: 92 Copynumber: 2.2 Consensus size: 91
3088206 TTATATTATT
* * *
3088216 TATTAATATAATATAATATT-ATTTATAATAATATTTACTAATATATTATATTAATAGTCTATTA
1 TATTATTATAATATAATATTAATTAATAATAATATTTACTAATATATTATATTAATAGTATATTA
3088280 TTTATTAATAATATTATTTATTCATA
66 TTTATTAATAATATTATTTATTCATA
* * *
3088306 TATTATTATAATAT-TTATTAATTAAATTAATAGTATTTATTAATATATTATATTAATAGTATAT
1 TATTATTATAATATAATATTAATT-AA-TAATAATATTTACTAATATATTATATTAATAGTATAT
3088370 TATTTATTCATATAATATTATTTATT-A-A
64 TATTTATT-A-ATAATATTATTTATTCATA
*
3088398 TA-TATTGTAATATAATATTA
1 TATTATTATAATATAATATTA
3088418 TTTATTTATT
Statistics
Matches: 98, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
89 4 0.04
90 16 0.16
91 11 0.11
92 50 0.51
93 2 0.02
94 15 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (91 bp):
TATTATTATAATATAATATTAATTAATAATAATATTTACTAATATATTATATTAATAGTATATTA
TTTATTAATAATATTATTTATTCATA
Found at i:3104247 original size:25 final size:27
Alignment explanation
Indices: 3104215--3104272 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
3104205 AAACTTAAAA
*
3104215 TTTTTAATCATATTTTTA-TC-ACACT
1 TTTTTAATCATATTTTTAGTCTAAACT
* *
3104240 TTTTTAATTATTTTTTTAGTCTAAACT
1 TTTTTAATCATATTTTTAGTCTAAACT
3104267 TTTTTA
1 TTTTTA
3104273 CAACCACAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 16 0.57
26 2 0.07
27 10 0.36
ACGTcount: A:0.26, C:0.10, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTTTAATCATATTTTTAGTCTAAACT
Found at i:3105222 original size:87 final size:86
Alignment explanation
Indices: 3105072--3105245 Score: 260
Period size: 87 Copynumber: 2.0 Consensus size: 86
3105062 AAAGATCATC
* ** *
3105072 TTTTTTAAATTAAAAATTTTGATTTTGAATTTAATTGATGTTTGTTTATTAAAATTATTTTAAAA
1 TTTTTTAAATTAAAAATTTTGATATTGAATTTAATTGATAATTATTTATTAAAATTATTTTAAAA
* *
3105137 TGTATGATTTTTAATTATTTA
66 TATATAATTTTTAATTATTTA
*
3105158 TTTTATTAAATTAAAATTTTTGA-ATTGAAATTTAATTGATAATTATTTATTAAAATTATTTTAA
1 TTTT-TTAAATTAAAAATTTTGATATTG-AATTTAATTGATAATTATTTATTAAAATTATTTTAA
3105222 AATATATAATTTTTAATTATTTA
64 AATATATAATTTTTAATTATTTA
3105245 T
1 T
3105246 CTTAAACTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 7 0.09
87 72 0.91
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (86 bp):
TTTTTTAAATTAAAAATTTTGATATTGAATTTAATTGATAATTATTTATTAAAATTATTTTAAAA
TATATAATTTTTAATTATTTA
Found at i:3105245 original size:29 final size:28
Alignment explanation
Indices: 3105126--3105262 Score: 84
Period size: 29 Copynumber: 4.7 Consensus size: 28
3105116 TTTATTAAAA
*
3105126 TTATTTTAAAATGTATGATTTTTAATTAT
1 TTATTTTAAAAT-TATAATTTTTAATTAT
*
3105155 TTATTTTATTAAATTAAAATTTTTGAATTGAAAT
1 TTATTTTA--AAATTATAATTTTT-AATT---AT
* * * * *
3105189 TTAATTGATAATTAT--TTATTAA--AA
1 TTATTTTAAAATTATAATTTTTAATTAT
3105213 TTATTTTAAAATATATAATTTTTAATTAT
1 TTATTTTAAAAT-TATAATTTTTAATTAT
* *
3105242 TTATCTTAAACTATATAATTT
1 TTATTTTAAAAT-TATAATTT
3105263 AAAAATTGAA
Statistics
Matches: 82, Mismatches: 15, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
24 10 0.12
25 3 0.04
27 6 0.07
29 30 0.37
30 12 0.15
31 8 0.10
32 5 0.06
34 8 0.10
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (28 bp):
TTATTTTAAAATTATAATTTTTAATTAT
Found at i:3109524 original size:3 final size:3
Alignment explanation
Indices: 3109518--3109546 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
3109508 CTGGGACGGC
3109518 TGT TGT TG- TGT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
3109547 AGCAACACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.00, G:0.34, T:0.66
Consensus pattern (3 bp):
TGT
Found at i:3114104 original size:23 final size:23
Alignment explanation
Indices: 3114073--3114116 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
3114063 AAAGTTTACC
3114073 ATAACTTTTCTTTATATATATGT
1 ATAACTTTTCTTTATATATATGT
*
3114096 ATAATTTTTCTTTATATATAT
1 ATAACTTTTCTTTATATATAT
3114117 ATATGATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (23 bp):
ATAACTTTTCTTTATATATATGT
Found at i:3117039 original size:26 final size:22
Alignment explanation
Indices: 3116995--3117047 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
3116985 TATTTTTTCG
3116995 TTTATTTATATTCATAAATAAA
1 TTTATTTATATTCATAAATAAA
**
3117017 TTTATTTACTATTCATTTA-AAA
1 TTTATTTA-TATTCATAAATAAA
3117039 TTTATTTAT
1 TTTATTTAT
3117048 TGTTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 19 0.68
23 8 0.29
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTATTTATATTCATAAATAAA
Found at i:3117080 original size:19 final size:18
Alignment explanation
Indices: 3117038--3117080 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
3117028 TTCATTTAAA
3117038 ATTTATTTATTGTTATTT
1 ATTTATTTATTGTTATTT
3117056 -TATTATTTATTTGTTATTT
1 AT-TTATTTA-TTGTTATTT
3117075 ATTTAT
1 ATTTAT
3117081 AATAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.05
18 7 0.32
19 13 0.59
20 1 0.05
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
ATTTATTTATTGTTATTT
Found at i:3117187 original size:15 final size:14
Alignment explanation
Indices: 3117167--3117209 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
3117157 TTTATGTTCG
3117167 TTTAAAGTTTATTTA
1 TTTAAA-TTTATTTA
3117182 TTTAAATTTATTTA
1 TTTAAATTTATTTA
*
3117196 ATTATAATTTATTT
1 TTTA-AATTTATTT
3117210 GTTATTCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTAAATTTATTTA
Found at i:3117250 original size:10 final size:12
Alignment explanation
Indices: 3117235--3117291 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
3117225 ATTCATTTAT
*
3117235 ATATATTTTTAA
1 ATATATTTATAA
3117247 ATATATTTATAA
1 ATATATTTATAA
* * **
3117259 ATGTATGTATTT
1 ATATATTTATAA
3117271 A-ATATTTATAA
1 ATATATTTATAA
*
3117282 ATAAATTTAT
1 ATATATTTAT
3117292 TTAATTTAAT
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
11 7 0.21
12 27 0.79
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (12 bp):
ATATATTTATAA
Found at i:3117292 original size:23 final size:23
Alignment explanation
Indices: 3117249--3117296 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
3117239 ATTTTTAAAT
**
3117249 ATATTTATAAATGTATGTATTTA
1 ATATTTATAAATAAATGTATTTA
*
3117272 ATATTTATAAATAAATTTATTTA
1 ATATTTATAAATAAATGTATTTA
3117295 AT
1 AT
3117297 TTAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
ATATTTATAAATAAATGTATTTA
Found at i:3119529 original size:16 final size:16
Alignment explanation
Indices: 3119488--3119530 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
3119478 AGGAAATAAA
*
3119488 TAAATAAATAAAAATT
1 TAAATAAATTAAAATT
*
3119504 T-AATATATTAAAATT
1 TAAATAAATTAAAATT
*
3119519 TAAAAAAATTAA
1 TAAATAAATTAA
3119531 TTATTGATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAATAAATTAAAATT
Found at i:3136025 original size:20 final size:19
Alignment explanation
Indices: 3136002--3136056 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
3135992 AATTTTAAAA
3136002 AATATGATTAAATTAAGTTT
1 AATATGATTAAATTAA-TTT
* *
3136022 AATAGGATTATATTTAATTT
1 AATATGATTA-AATTAATTT
3136042 ACATAT-A-TAAATTAA
1 A-ATATGATTAAATTAA
3136057 AAATAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 5 0.17
19 2 0.07
20 14 0.48
21 8 0.28
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (19 bp):
AATATGATTAAATTAATTT
Found at i:3136287 original size:13 final size:12
Alignment explanation
Indices: 3136264--3136294 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3136254 TTTAATAAAT
3136264 TTTAATTTTTTG
1 TTTAATTTTTTG
3136276 TTTAATTTTTT-
1 TTTAATTTTTTG
3136287 TTTAATTT
1 TTTAATTT
3136295 GGACAAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (12 bp):
TTTAATTTTTTG
Found at i:3143758 original size:7 final size:8
Alignment explanation
Indices: 3143739--3143763 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
3143729 TTCTAATTTA
3143739 AAAAAATT
1 AAAAAATT
3143747 AAAAAATT
1 AAAAAATT
3143755 AAAAAATT
1 AAAAAATT
3143763 A
1 A
3143764 GGTCAAATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAAAATT
Found at i:3147339 original size:20 final size:19
Alignment explanation
Indices: 3147316--3147370 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
3147306 AATTTTAAAA
3147316 AATATGATTAAATTAAGTTT
1 AATATGATTAAATTAA-TTT
* *
3147336 AATAGGATTATATTTAATTT
1 AATATGATTA-AATTAATTT
3147356 ACATAT-A-TAAATTAA
1 A-ATATGATTAAATTAA
3147371 AAATAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 5 0.17
19 2 0.07
20 14 0.48
21 8 0.28
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (19 bp):
AATATGATTAAATTAATTT
Found at i:3147598 original size:14 final size:13
Alignment explanation
Indices: 3147574--3147606 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
3147564 TTTAATAAAT
3147574 TTTAATTTTTTTG
1 TTTAATTTTTTTG
3147587 TTTAATTTTTTT-
1 TTTAATTTTTTTG
3147599 TTTAATTT
1 TTTAATTT
3147607 GGACAAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (13 bp):
TTTAATTTTTTTG
Found at i:3162716 original size:21 final size:21
Alignment explanation
Indices: 3162678--3162717 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3162668 CCCTCAAATA
*
3162678 TTTTTCTTTGCCAGTTAAGCG
1 TTTTTCTTTGCCAATTAAGCG
*
3162699 TTTTTCTTTGCTAATTAAG
1 TTTTTCTTTGCCAATTAAG
3162718 TACTTTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (21 bp):
TTTTTCTTTGCCAATTAAGCG
Found at i:3172860 original size:18 final size:17
Alignment explanation
Indices: 3172837--3172881 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
3172827 TCAATAATTG
3172837 ATTAATTAATTAAATTAA
1 ATTAATTAATT-AATTAA
*
3172855 ATTAATTCAGTTAATTAA
1 ATTAATT-AATTAATTAA
*
3172873 TTTAATTAA
1 ATTAATTAA
3172882 AATCGACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 19 0.83
19 3 0.13
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTAATTAATTAATTAA
Found at i:3173267 original size:21 final size:21
Alignment explanation
Indices: 3173219--3173260 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
3173209 TCTATTAATT
3173219 TTGATTATAAAACTTAAAAAC
1 TTGATTATAAAACTTAAAAAC
*
3173240 TTGATTATAAAGCTTAAAAAC
1 TTGATTATAAAACTTAAAAAC
3173261 ATTATTACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (21 bp):
TTGATTATAAAACTTAAAAAC
Found at i:3200079 original size:21 final size:22
Alignment explanation
Indices: 3200054--3200098 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
3200044 ATGTTTTTTA
*
3200054 TTTTAT-TTTTTAGAAAATA-AT
1 TTTTATATTTATA-AAAATATAT
3200075 TTTTATATTTATAAAAATATAT
1 TTTTATATTTATAAAAATATAT
3200097 TT
1 TT
3200099 GATAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTATATTTATAAAAATATAT
Found at i:3200130 original size:25 final size:26
Alignment explanation
Indices: 3200085--3200141 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
3200075 TTTTATATTT
3200085 ATAAAAATATATTTGATAAA-TAAAA
1 ATAAAAATATATTTGATAAAGTAAAA
* *
3200110 ATAAAAATAATTTTTTGA-AATGTAAAA
1 ATAAAAAT-A-TATTTGATAAAGTAAAA
3200137 ATAAA
1 ATAAA
3200142 GAAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.30
26 3 0.11
27 16 0.59
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.33
Consensus pattern (26 bp):
ATAAAAATATATTTGATAAAGTAAAA
Found at i:3200770 original size:2 final size:2
Alignment explanation
Indices: 3200763--3200790 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3200753 AAATAGGAGC
3200763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3200791 TTGATTCGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3218320 original size:15 final size:16
Alignment explanation
Indices: 3218300--3218344 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
3218290 TAATCATGCA
3218300 AAAAAAAAAAAAAC-T
1 AAAAAAAAAAAAACAT
* *
3218315 AAAAAAATAAACACAT
1 AAAAAAAAAAAAACAT
3218331 AAAAAATAAAAAAA
1 AAAAAA-AAAAAAA
3218345 TACCAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 7 0.29
17 5 0.21
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (16 bp):
AAAAAAAAAAAAACAT
Found at i:3218354 original size:10 final size:8
Alignment explanation
Indices: 3218299--3218346 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
3218289 TTAATCATGC
3218299 AAAAAAA-
1 AAAAAAAT
3218306 AAAAAAACT
1 AAAAAAA-T
3218315 AAAAAAAT
1 AAAAAAAT
* *
3218323 AAACACAT
1 AAAAAAAT
3218331 -AAAAAAT
1 AAAAAAAT
3218338 AAAAAAAT
1 AAAAAAAT
3218346 A
1 A
3218347 CCAAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
7 12 0.35
8 15 0.44
9 7 0.21
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:3220446 original size:3 final size:3
Alignment explanation
Indices: 3220438--3220479 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
3220428 ACAAATATTG
3220438 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3220480 CATCCTCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:3220491 original size:3 final size:3
Alignment explanation
Indices: 3220478--3220512 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
3220468 TATTATTATT
*
3220478 ATC ATC CTC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
3220513 TATTTACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:3221500 original size:10 final size:9
Alignment explanation
Indices: 3221471--3221515 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
3221461 TAACTTCAAG
3221471 TATTTATTT
1 TATTTATTT
*
3221480 TATTTGTTTT
1 TATTT-ATTT
3221490 TATTCTATTT
1 TATT-TATTT
3221500 TATTTA-TT
1 TATTTATTT
3221508 TATTTATT
1 TATTTATT
3221516 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 8 0.26
9 8 0.26
10 14 0.45
11 1 0.03
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (9 bp):
TATTTATTT
Found at i:3225452 original size:14 final size:14
Alignment explanation
Indices: 3225433--3225460 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3225423 TAAGTACCCT
3225433 GATAGGTGAATCTA
1 GATAGGTGAATCTA
3225447 GATAGGTGAATCTA
1 GATAGGTGAATCTA
3225461 ACTATGGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
GATAGGTGAATCTA
Found at i:3226495 original size:15 final size:16
Alignment explanation
Indices: 3226457--3226495 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
3226447 TATTTTTATT
3226457 AAATAATATATATAAA
1 AAATAATATATATAAA
*
3226473 AAATAATAT-TATTAA
1 AAATAATATATATAAA
*
3226488 ATATAATA
1 AAATAATA
3226496 ATAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATAATATATATAAA
Found at i:3226530 original size:16 final size:16
Alignment explanation
Indices: 3226509--3226545 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
3226499 AAAATTAAAC
* *
3226509 AAAAATACATAATATA
1 AAAAATACAAAATACA
3226525 AAAAATACAAAATACA
1 AAAAATACAAAATACA
3226541 AAAAA
1 AAAAA
3226546 AGAGAACAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAATACAAAATACA
Found at i:3227663 original size:20 final size:21
Alignment explanation
Indices: 3227630--3227669 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3227620 GTTAATTTTT
3227630 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
3227651 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
3227670 TACCAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:3227889 original size:21 final size:22
Alignment explanation
Indices: 3227855--3227895 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
3227845 CCAAATTTTA
3227855 AATGAAAATATT-AATAAAATT
1 AATGAAAATATTAAATAAAATT
* *
3227876 AATGAAATTTTTAAATAAAA
1 AATGAAAATATTAAATAAAA
3227896 AATAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (22 bp):
AATGAAAATATTAAATAAAATT
Found at i:3228668 original size:22 final size:22
Alignment explanation
Indices: 3228643--3228687 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
3228633 ATAAAAAAGG
3228643 TAAAAA-AAAAAACAAAACAAAT
1 TAAAAATAAAAAACAAAA-AAAT
*
3228665 TAAAAATAAAAAGCAAAAAAAT
1 TAAAAATAAAAAACAAAAAAAT
3228687 T
1 T
3228688 CACACATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (22 bp):
TAAAAATAAAAAACAAAAAAAT
Found at i:3239666 original size:47 final size:48
Alignment explanation
Indices: 3239611--3240429 Score: 570
Period size: 47 Copynumber: 16.9 Consensus size: 48
3239601 AGAACATATG
* **
3239611 AGATTTTTAAAGTTGTTGAGCCTCTACTGAGATAAGCTTTTTCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * * **
3239659 -GATTTTTAAAGTTATTAAGCATCTATTGAGAGGAGC-TTTTCTAA-AT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC-AAGAT
* * *
3239705 AAATTTTTAAAGTTGTTGAGCCTCTACTGAAAGGAGCTCTTTTTCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG--CTTTTTCAAGAT
** * * * *
3239755 -GATTTTTAAAGTTGTTGAGTTTCTGTTGAGATGAGCCTTTTTTAAAAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAAGAT
* * *
3239803 GAAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGTTCTTTTCAAGAT
1 --AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCT-TTTTCAAGAT
*
3239854 GAGAATTTTTAAAGTTGTTAAG---C--CT---A-GAGCTTTTTCAAG-T
1 -AG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * * * *
3239894 GAGA-TTTTAAAGTTGTAGAGCATATGCTAAGAGGAGCATTTTCAAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * * ** *
3239942 GAGAATTTTAAAGTTGTTGAGTCTCTACTGAGATAAGCTTTTTC-ATAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * *
3239990 AAGA-TTTTAAAGTTATTGAGCCTCTGTTGAGATGG-GCTTTTCCAA-AT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA-GGAGCTTTTTCAAGAT
* * * * * *
3240037 -GAATTTTTAAAGTTGTTAAGCCTCTGCTAAAAAGAACCTTTTCAAGAT
1 AG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * * * *
3240085 GAGATTTTTAAAGTTGTTGAGCTTCTGTTGAAATGAGCTTTTTC-ATAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * *
3240133 GAGA-TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACTTTTTTCAAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCAAGAT
* * *
3240182 GAGAATTTTTAAAGTTGTTGAGCTTCTGCTGAGAGGATTCTTTTTAAAGAT
1 -AG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA-GCTTTTTCAAGAT
* * * * * *
3240233 AAAATTTTTAAAATTGTTGAGCCTATACTGAAAGAAGCTTTTTC-AGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
* * * *
3240281 AAAATTTTTAAAGTCGTTGAGCCTCTGCTAAGATGAGCCCTTTTT-AAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG--CTTTTTCAAGAT
* * * *
3240331 AAGATTTTTAAAGTTGTTAAGCCTCTGCTAAGATGAGCCCTTTTCAAAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTC-AAGAT
* * * *
3240382 GAAAATTTTTAAAGTTATTAAGCCTCTACTGAGAGGAGTCTTTTTCAA
1 --AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAA
3240430 ATTTTAAATT
Statistics
Matches: 613, Mismatches: 117, Indels: 79
0.76 0.14 0.10
Matches are distributed among these distances:
38 14 0.02
39 1 0.00
40 4 0.01
41 8 0.01
42 3 0.00
43 3 0.00
45 1 0.00
46 12 0.02
47 162 0.26
48 71 0.12
49 113 0.18
50 82 0.13
51 100 0.16
52 39 0.06
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (48 bp):
AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT
Found at i:3240065 original size:143 final size:145
Alignment explanation
Indices: 3239608--3240413 Score: 573
Period size: 143 Copynumber: 5.6 Consensus size: 145
3239598 TGAAGAACAT
* * * ** *
3239608 ATGAGATTTTTAAAGTTGTTGAGCCTCTACTGAGATAAGCTTTTTCAAGATG---ATTTTTAAAG
1 ATGA-ATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAGCCTTTTCAAGATGAAAATTTTTAAAG
* * * * * ** * *
3239670 TTATTAAGCATCTATTGAGAGGAGC-TTTTCTAAATAA-ATTTTTAAAGTTGTTGAGCCTCTACT
65 TTGTTGAGCCTCTACTGAAATAAGCTTTTTC-ATATAAGA-TTTTAAAGTTGTTGAGCCTCTGCT
* * *
3239733 GAAAGGAGCTCTTTTTCAAG
128 GAGATGAG-AC-TTTTCAAG
* ** * * * * *
3239753 ATG-ATTTTTAAAGTTGTTGAGTTTCTGTTGAGATGAGCCTTTTTTAAAATGAAAATTTTTAAAG
1 ATGAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAGCC-TTTTCAAGATGAAAATTTTTAAAG
* * * * * * *
3239817 TTGTTGAGCCTCTGCTGAGAGAAGTTCTTTTCAAGATGAGAATTTTTAAAGTTGTTAAG---C--
65 TTGTTGAGCCTCTACTGAAATAAGCT-TTTTC-ATATAAG-A-TTTTAAAGTTGTTGAGCCTCTG
3239877 CT---A-GAG-CTTTTTCAAG
126 CTGAGATGAGAC-TTTTCAAG
* * * *
3239893 -TGAGA-TTTTAAAGTTG-TAGAGCATATGCTAAGAGGAGCATTTTCAAGATGAGAA-TTTTAAA
1 ATGA-ATTTTTAAAGTTGTTA-AGCCTCTGCTAAGAGGAGCCTTTTCAAGATGAAAATTTTTAAA
* * * *
3239954 GTTGTTGAGTCTCTACTGAGATAAGCTTTTTCATATAAGATTTTAAAGTTATTGAGCCTCTGTTG
64 GTTGTTGAGCCTCTACTGAAATAAGCTTTTTCATATAAGATTTTAAAGTTGTTGAGCCTCTGCTG
*
3240019 AGATG-GGCTTTTCCAA-
129 AGATGAGACTTTT-CAAG
* * * *
3240035 ATGAATTTTTAAAGTTGTTAAGCCTCTGCTAAAAAGAACCTTTTCAAGATG-AGATTTTTAAAGT
1 ATGAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAGCCTTTTCAAGATGAAAATTTTTAAAGT
* ** * * *
3240099 TGTTGAGCTTCTGTTGAAATGAGCTTTTTCATATGAGATTTTAAAGTTGTTGAGCCTCTACTGAG
66 TGTTGAGCCTCTACTGAAATAAGCTTTTTCATATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAG
*
3240164 A-GAAACTTTTTTCAAG
131 ATGAGAC--TTTTCAAG
* * * * * *
3240180 ATGAGAATTTTTAAAGTTGTTGAGCTTCTGCTGAGAGGATTCTTTTTAAAGAT-AAAATTTTTAA
1 AT--GAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGA-GCCTTTTCAAGATGAAAATTTTTAA
* * * * * *
3240244 AATTGTTGAGCCTATACTGAAAGAAGCTTTTTCAGATAAAATTTTTAAAGTCGTTGAGCCTCTGC
63 AGTTGTTGAGCCTCTACTGAAATAAGCTTTTTCATATAAGA-TTTTAAAGTTGTTGAGCCTCTGC
* * *
3240309 TAAGATGAGCCCTTTTTAAG
127 TGAGATGAG-ACTTTTCAAG
* *
3240329 ATAAGATTTTTAAAGTTGTTAAGCCTCTGCTAAGATGAGCCCTTTTCAAAGATGAAAATTTTTAA
1 ATGA-ATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAG-CCTTTTC-AAGATGAAAATTTTTAA
* *
3240394 AGTTATTAAGCCTCTACTGA
63 AGTTGTTGAGCCTCTACTGA
3240414 GAGGAGTCTT
Statistics
Matches: 524, Mismatches: 96, Indels: 77
0.75 0.14 0.11
Matches are distributed among these distances:
134 14 0.03
135 1 0.00
136 5 0.01
137 6 0.01
138 30 0.06
139 16 0.03
140 34 0.06
141 1 0.00
142 12 0.02
143 141 0.27
144 14 0.03
145 9 0.02
146 2 0.00
147 59 0.11
148 85 0.16
149 48 0.09
150 29 0.06
151 18 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (145 bp):
ATGAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAGCCTTTTCAAGATGAAAATTTTTAAAGT
TGTTGAGCCTCTACTGAAATAAGCTTTTTCATATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAG
ATGAGACTTTTCAAG
Found at i:3241767 original size:20 final size:21
Alignment explanation
Indices: 3241734--3241773 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3241724 TTTAATTTTT
3241734 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
3241755 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
3241774 TACCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:3249601 original size:29 final size:30
Alignment explanation
Indices: 3249569--3249750 Score: 89
Period size: 30 Copynumber: 6.1 Consensus size: 30
3249559 AATAGTTTTT
*
3249569 AATTTATATATTTTTA-TTACA-TCAAAATA
1 AATTTATATATTTTAATTTACATTC-AAATA
*
3249598 AATTTTTA-ATATTTAATTTACATTCAAATA
1 AATTTATATAT-TTTAATTTACATTCAAATA
* *
3249628 ATTTTATA-ATATTTAATTTATA-TCTAAATA
1 AATTTATATAT-TTTAATTTACATTC-AAATA
* * *
3249658 AATTTTTAGCA-TTTAATTTATA-TCTAAATA
1 AATTTATA-TATTTTAATTTACATTC-AAATA
** *
3249688 ATATTT-TA-ATATTTAATTTGTATTTAAATA
1 A-ATTTATATAT-TTTAATTTACATTCAAATA
* *
3249718 AATTCT-TA-ATTTTTAATTTATATTTAAATA
1 AATT-TATATA-TTTTAATTTACATTCAAATA
3249748 AAT
1 AAT
3249751 CACTATCATA
Statistics
Matches: 131, Mismatches: 10, Indels: 23
0.80 0.06 0.14
Matches are distributed among these distances:
28 3 0.02
29 16 0.12
30 103 0.79
31 8 0.06
32 1 0.01
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (30 bp):
AATTTATATATTTTAATTTACATTCAAATA
Found at i:3249742 original size:30 final size:30
Alignment explanation
Indices: 3249593--3249750 Score: 203
Period size: 30 Copynumber: 5.3 Consensus size: 30
3249583 TATTACATCA
* *
3249593 AAATAAATTTTTAATATTTAATTTACATTC
1 AAATAAATTTTTAATATTTAATTTATATTT
*
3249623 AAAT-AATTTTATAATATTTAATTTATATCT
1 AAATAAATTTT-TAATATTTAATTTATATTT
** *
3249653 AAATAAATTTTTAGCATTTAATTTATATCT
1 AAATAAATTTTTAATATTTAATTTATATTT
*
3249683 AAAT-AATATTTTAATATTTAATTTGTATTT
1 AAATAAAT-TTTTAATATTTAATTTATATTT
* *
3249713 AAATAAATTCTTAATTTTTAATTTATATTT
1 AAATAAATTTTTAATATTTAATTTATATTT
3249743 AAATAAAT
1 AAATAAAT
3249751 CACTATCATA
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
29 9 0.08
30 94 0.84
31 9 0.08
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (30 bp):
AAATAAATTTTTAATATTTAATTTATATTT
Found at i:3250381 original size:2 final size:2
Alignment explanation
Indices: 3250376--3250406 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3250366 TCAATGGGGG
3250376 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
3250407 GGTAGATGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:3251588 original size:18 final size:18
Alignment explanation
Indices: 3251540--3251588 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
3251530 AAGATAAAAA
*
3251540 AATTTTGAATTAAAATTT
1 AATTTTTAATTAAAATTT
** *
3251558 AATAATTATTTAAAATTT
1 AATTTTTAATTAAAATTT
*
3251576 TATTTTTAATTAA
1 AATTTTTAATTAA
3251589 TTAAACCTTC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
AATTTTTAATTAAAATTT
Found at i:3268135 original size:2 final size:2
Alignment explanation
Indices: 3268128--3268166 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
3268118 CATTATATTC
3268128 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AGT -T AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A
3268167 GTTATCTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3273457 original size:15 final size:15
Alignment explanation
Indices: 3273437--3273465 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3273427 TTAATTGAAT
3273437 AATTAATTGAAAAGC
1 AATTAATTGAAAAGC
3273452 AATTAATTGAAAAG
1 AATTAATTGAAAAG
3273466 AAGAAAAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.14, T:0.28
Consensus pattern (15 bp):
AATTAATTGAAAAGC
Found at i:3274204 original size:3 final size:3
Alignment explanation
Indices: 3274196--3274227 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
3274186 CAACGATTTT
3274196 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
3274228 CTGAGAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:3275128 original size:24 final size:24
Alignment explanation
Indices: 3275101--3275155 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
3275091 TTTTCATTAA
3275101 AATTTTTTCAATCATAATTATAAT
1 AATTTTTTCAATCATAATTATAAT
* **
3275125 AATTTTTTTAATTGTAATTATAAT
1 AATTTTTTCAATCATAATTATAAT
3275149 -ATTTTTT
1 AATTTTTT
3275156 ATTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
AATTTTTTCAATCATAATTATAAT
Found at i:3276284 original size:7 final size:7
Alignment explanation
Indices: 3276266--3276299 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
3276256 AAATAAACCC
3276266 AAAAAATG
1 AAAAAA-G
*
3276274 AAAAAAA
1 AAAAAAG
3276281 AAAAAAG
1 AAAAAAG
3276288 AAAAAAG
1 AAAAAAG
3276295 AAAAA
1 AAAAA
3276300 TGGTGATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:3276897 original size:2 final size:2
Alignment explanation
Indices: 3276890--3276922 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3276880 CTTGATAGCA
3276890 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3276923 AGAATTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3288471 original size:13 final size:14
Alignment explanation
Indices: 3288437--3288468 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
3288427 AAAATAAGAC
*
3288437 AATAATTTTTGAAA
1 AATAATTTTTAAAA
3288451 AATAATTTTTAAAA
1 AATAATTTTTAAAA
3288465 AATA
1 AATA
3288469 TTTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
AATAATTTTTAAAA
Found at i:3288634 original size:27 final size:26
Alignment explanation
Indices: 3288585--3288656 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
3288575 TTAATATAAC
* *
3288585 TATTAAAATAT-TAAAAATGATTTAT
1 TATTAAAATATATTAAAATTATTTAT
3288610 TATTAAATATATATTAAAATTATTTAT
1 TATTAAA-ATATATTAAAATTATTTAT
* *
3288637 TAATAAAAT-TATTAATATTA
1 TATTAAAATATATTAAAATTA
3288657 AAAAATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.41
26 6 0.15
27 18 0.44
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTATTTAT
Found at i:3288645 original size:16 final size:17
Alignment explanation
Indices: 3288624--3288706 Score: 70
Period size: 16 Copynumber: 5.1 Consensus size: 17
3288614 AAATATATAT
3288624 TAAAATTATT-TATTAA
1 TAAAATTATTATATTAA
3288640 TAAAATTATTAATATTAA
1 TAAAATTATT-ATATTAA
* *
3288658 -AAAATAATTATATT-T
1 TAAAATTATTATATTAA
* *
3288673 TAATAA-TATT-TAATAT
1 TAA-AATTATTATATTAA
3288689 TAAAATT-TTATATTAA
1 TAAAATTATTATATTAA
3288705 TA
1 TA
3288707 TAAAAAATAC
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
15 7 0.13
16 31 0.57
17 10 0.19
18 6 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAAATTATTATATTAA
Found at i:3288667 original size:36 final size:34
Alignment explanation
Indices: 3288627--3288693 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 34
3288617 TATATATTAA
3288627 AATTAT-TTATTAATAAAATTATTAATATTAAAAAAT
1 AATTATATT-TTAATAAAA-T-TTAATATTAAAAAAT
*
3288663 AATTATATTTTAATAATATTTAATATTAAAA
1 AATTATATTTTAATAAAATTTAATATTAAAA
3288694 TTTTATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 12 0.41
35 1 0.03
36 14 0.48
37 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (34 bp):
AATTATATTTTAATAAAATTTAATATTAAAAAAT
Found at i:3288785 original size:18 final size:15
Alignment explanation
Indices: 3288747--3288857 Score: 79
Period size: 15 Copynumber: 7.3 Consensus size: 15
3288737 ATTCTTTGTT
3288747 TTATTTATTAATATA
1 TTATTTATTAATATA
*
3288762 TGATTTATTAGTATAATA
1 TTATTTATTA--AT-ATA
*
3288780 TTATTTATTTATTAATA
1 TTATTTA-TTAAT-ATA
*
3288797 TAATGTTA-TAATAT-
1 TTAT-TTATTAATATA
3288811 TTATTTA-TAAT-TA
1 TTATTTATTAATATA
*
3288824 -TATTCATTAATATA
1 TTATTTATTAATATA
*
3288838 TTATTTATAAATATA
1 TTATTTATTAATATA
*
3288853 ATATT
1 TTATT
3288858 ATTTATAAGT
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
12 6 0.08
13 11 0.14
14 5 0.06
15 27 0.35
16 3 0.04
17 10 0.13
18 12 0.16
19 3 0.04
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (15 bp):
TTATTTATTAATATA
Found at i:3288791 original size:22 final size:23
Alignment explanation
Indices: 3288764--3288863 Score: 78
Period size: 22 Copynumber: 4.3 Consensus size: 23
3288754 TTAATATATG
* *
3288764 ATTTATTAGTATAATATTAT-TT
1 ATTTATTAATATAATATTATAAT
*
3288786 ATTTATTAATATAATGTTATAAT
1 ATTTATTAATATAATATTATAAT
* *
3288809 ATTTATTTATAATTATATTCATTAAT
1 ATTTATTAAT-ATAATATT-A-TAAT
* * *
3288835 ATATTATTTATA-AATATAATATT
1 AT-TTATTAATATAATATTATAAT
3288858 ATTTAT
1 ATTTAT
3288864 AAGTAAAATT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
22 22 0.34
23 15 0.23
24 7 0.11
25 5 0.08
26 7 0.11
27 8 0.12
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTATTAATATAATATTATAAT
Found at i:3288816 original size:27 final size:26
Alignment explanation
Indices: 3288749--3288859 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 26
3288739 TCTTTGTTTT
* *
3288749 ATTTATTAATATATGATTTATTAGTATA
1 ATTTA-TAATAT-TTATTTATTAATATA
3288777 A--TAT--TATTTATTTATTAATATA
1 ATTTATAATATTTATTTATTAATATA
3288799 ATGTTATAATATTTATTTA-TAAT-TA
1 AT-TTATAATATTTATTTATTAATATA
* *
3288824 TATTCATTAATATATTATTTATAAATATA
1 -ATTTA-TAATAT-TTATTTATTAATATA
3288853 ATATTAT
1 AT-TTAT
3288860 TTATAAGTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 22
0.71 0.05 0.23
Matches are distributed among these distances:
22 14 0.21
23 3 0.04
25 8 0.12
26 14 0.21
27 17 0.25
28 7 0.10
29 4 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (26 bp):
ATTTATAATATTTATTTATTAATATA
Found at i:3288864 original size:27 final size:26
Alignment explanation
Indices: 3288778--3288860 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 26
3288768 ATTAGTATAA
* *
3288778 TATTAT-TTATTTATTAATATAATGT
1 TATTATATTATTTATAAATATAATAT
* * *
3288803 TATAATATTTATTTATAATTATATTCAT
1 TATTATA-TTATTTATAAATATAAT-AT
*
3288831 TAATATATTATTTATAAATATAATAT
1 TATTATATTATTTATAAATATAATAT
3288857 TATT
1 TATT
3288861 TATAAGTAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
25 5 0.11
26 5 0.11
27 29 0.64
28 6 0.13
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (26 bp):
TATTATATTATTTATAAATATAATAT
Found at i:3288878 original size:18 final size:18
Alignment explanation
Indices: 3288835--3288872 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3288825 ATTCATTAAT
*
3288835 ATATTATTTATAAATATA
1 ATATTATTTATAAATAAA
*
3288853 ATATTATTTATAAGTAAA
1 ATATTATTTATAAATAAA
3288871 AT
1 AT
3288873 TATATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATATTATTTATAAATAAA
Found at i:3289595 original size:2 final size:2
Alignment explanation
Indices: 3289590--3289618 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3289580 ACTGTGTGTG
3289590 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3289619 TTCCCATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3295320 original size:20 final size:21
Alignment explanation
Indices: 3295295--3295338 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
3295285 TTACTGTGAA
*
3295295 TTTTTTATCTT-CTTTTTT-T
1 TTTTTTTTCTTGCTTTTTTCT
*
3295314 TTTTTTTTTTTGCTTTTTTCT
1 TTTTTTTTCTTGCTTTTTTCT
3295335 TTTT
1 TTTT
3295339 GTCATAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 7 0.33
21 5 0.24
ACGTcount: A:0.02, C:0.09, G:0.02, T:0.86
Consensus pattern (21 bp):
TTTTTTTTCTTGCTTTTTTCT
Found at i:3303255 original size:24 final size:24
Alignment explanation
Indices: 3303223--3303271 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
3303213 CAGAGATAGA
3303223 TTATATTATAAATCTTTTACAAAC
1 TTATATTATAAATCTTTTACAAAC
3303247 TTATATTATAAATCTTTTACAAAC
1 TTATATTATAAATCTTTTACAAAC
3303271 T
1 T
3303272 CCAACTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATATTATAAATCTTTTACAAAC
Found at i:3307221 original size:14 final size:16
Alignment explanation
Indices: 3307193--3307225 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
3307183 TTAGTTATTA
3307193 TTTATATTTATAAAAT
1 TTTATATTTATAAAAT
3307209 TTTAT-TTTA-AAAAT
1 TTTATATTTATAAAAT
3307223 TTT
1 TTT
3307226 CTGAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATATTTATAAAAT
Found at i:3310347 original size:49 final size:49
Alignment explanation
Indices: 3310292--3310390 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
3310282 GGGAACTCCA
*
3310292 TTTTAACTTGAAGGATTATATTGAAGATGTCATAAATGTGAACTTGCAG
1 TTTTAACTTAAAGGATTATATTGAAGATGTCATAAATGTGAACTTGCAG
* * *
3310341 TTTTAACTTAAAGGATTATATTGGAGATGTCATAAATGTTAGCTTGCAG
1 TTTTAACTTAAAGGATTATATTGAAGATGTCATAAATGTGAACTTGCAG
3310390 T
1 T
3310391 CACTGCGAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (49 bp):
TTTTAACTTAAAGGATTATATTGAAGATGTCATAAATGTGAACTTGCAG
Found at i:3314460 original size:2 final size:2
Alignment explanation
Indices: 3314453--3314483 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
3314443 TCTTCACAAC
3314453 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3314484 ATCAACTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3315086 original size:7 final size:7
Alignment explanation
Indices: 3315074--3315148 Score: 51
Period size: 7 Copynumber: 11.7 Consensus size: 7
3315064 TGATATGAAT
3315074 TATAATA
1 TATAATA
3315081 TATAAT-
1 TATAATA
*
3315087 T-T-TTA
1 TATAATA
3315092 TATAATA
1 TATAATA
3315099 TAT-A-A
1 TATAATA
3315104 TATAATA
1 TATAATA
3315111 TATAA-A
1 TATAATA
3315117 TTATTAATA
1 -TA-TAATA
*
3315126 T-T-TTA
1 TATAATA
3315131 TATAATA
1 TATAATA
3315138 TA-AATA
1 TATAATA
3315144 TATAA
1 TATAA
3315149 ATTTTATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 22
0.67 0.05 0.28
Matches are distributed among these distances:
4 1 0.02
5 9 0.17
6 13 0.25
7 25 0.47
8 4 0.08
9 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TATAATA
Found at i:3315132 original size:20 final size:20
Alignment explanation
Indices: 3315077--3315144 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
3315067 TATGAATTAT
3315077 AATATATAAT-TTTTATAT-
1 AATATATAATATTTTATATA
**
3315095 AATATATAATATAATATATA
1 AATATATAATATTTTATATA
3315115 AAT-TATTAATATTTTATAT-
1 AATATA-TAATATTTTATATA
3315134 AATATA-AATAT
1 AATATATAATAT
3315145 ATAAATTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
18 15 0.36
19 11 0.26
20 16 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATATAATATTTTATATA
Found at i:3315132 original size:25 final size:25
Alignment explanation
Indices: 3315104--3315156 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
3315094 TAATATATAA
3315104 TATAAT-ATATAAAT-TATTAATATTT
1 TATAATAATATAAATATA-TAA-ATTT
3315129 TAT-ATAATATAAATATATAAATTT
1 TATAATAATATAAATATATAAATTT
3315153 TATA
1 TATA
3315157 TTCTACCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
24 9 0.36
25 14 0.56
26 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TATAATAATATAAATATATAAATTT
Found at i:3315143 original size:18 final size:19
Alignment explanation
Indices: 3315074--3315144 Score: 85
Period size: 18 Copynumber: 3.8 Consensus size: 19
3315064 TGATATGAAT
3315074 TATAATATATAAT-TTTTA
1 TATAATATATAATATTTTA
**
3315092 TATAATATATAATATAATA
1 TATAATATATAATATTTTA
3315111 TATAA-ATTATTAATATTTTA
1 TATAATA-TA-TAATATTTTA
3315131 TATAATATA-AATAT
1 TATAATATATAATAT
3315145 ATAAATTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 19 0.42
19 10 0.22
20 15 0.33
21 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATAATATATAATATTTTA
Found at i:3324274 original size:25 final size:24
Alignment explanation
Indices: 3324245--3324293 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
3324235 ATTAATTAAA
3324245 ATTAATATATATTTATTAAAAATAT
1 ATTAATATATATTT-TTAAAAATAT
*
3324270 ATTAATATATATTTTTAAACATAT
1 ATTAATATATATTTTTAAAAATAT
3324294 TACCTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTAATATATATTTTTAAAAATAT
Found at i:3324304 original size:25 final size:25
Alignment explanation
Indices: 3324247--3324307 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
3324237 TAATTAAAAT
*
3324247 TAATATATATTTATTAAAAATATAT
1 TAATATATATTTATTAAAAATATAC
*
3324272 TAATATATATTT-TTAAACATATTACC
1 TAATATATATTTATTAAAAATA-TA-C
3324298 TAAATATATA
1 T-AATATATA
3324308 AAATAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 8 0.26
25 14 0.45
26 1 0.03
27 8 0.26
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATATATTTATTAAAAATATAC
Found at i:3332472 original size:23 final size:23
Alignment explanation
Indices: 3332430--3332481 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
3332420 ATATTAACAC
3332430 ATATCTTA-TTTTTATTTTTAATT
1 ATAT-TTATTTTTTATTTTTAATT
3332453 A-ATTTATTTTTATATTTTTAATT
1 ATATTTATTTTT-TATTTTTAATT
3332476 ATATTT
1 ATATTT
3332482 TAAATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 3 0.12
22 6 0.23
23 13 0.50
24 4 0.15
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
ATATTTATTTTTTATTTTTAATT
Found at i:3332477 original size:12 final size:12
Alignment explanation
Indices: 3332442--3332482 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
3332432 ATCTTATTTT
3332442 TATTTTTAATTA
1 TATTTTTAATTA
*
3332454 -ATTTATT-TTTA
1 TATTT-TTAATTA
3332465 TATTTTTAATTA
1 TATTTTTAATTA
3332477 TATTTT
1 TATTTT
3332483 AAATAATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TATTTTTAATTA
Found at i:3334634 original size:17 final size:17
Alignment explanation
Indices: 3334612--3334645 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
3334602 CTTTTTTTTT
3334612 CCACTTCAATTAATTAA
1 CCACTTCAATTAATTAA
3334629 CCACTTCAATTAATTAA
1 CCACTTCAATTAATTAA
3334646 ATTATTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
CCACTTCAATTAATTAA
Found at i:3346847 original size:12 final size:12
Alignment explanation
Indices: 3346826--3346858 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3346816 CACAGTTTAC
3346826 AAAAAA-AAAAA
1 AAAAAAGAAAAA
3346837 AAAAAAGAAAAA
1 AAAAAAGAAAAA
*
3346849 GAAAAAGAAA
1 AAAAAAGAAA
3346859 GGGCACCCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAA
Found at i:3354091 original size:21 final size:20
Alignment explanation
Indices: 3354064--3354141 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 20
3354054 TACTCTGATA
3354064 TTATTTATAAAAATTTATTT
1 TTATTTATAAAAATTTATTT
3354084 TTAGTTTATAAATATTATTTATTT
1 TTA-TTTATAAA-A--ATTTATTT
* *
3354108 TGATTTA-AAAATTTTATGATT
1 TTATTTATAAAAATTTAT--TT
3354129 TTATTTTATAAAA
1 TTA-TTTATAAAA
3354142 TATACCTCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
19 5 0.11
20 3 0.06
21 13 0.28
22 8 0.17
23 8 0.17
24 10 0.21
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TTATTTATAAAAATTTATTT
Found at i:3354114 original size:23 final size:23
Alignment explanation
Indices: 3354076--3354140 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
3354066 ATTTATAAAA
3354076 ATTTATTTTTAGTTTATAAATATT
1 ATTTA-TTTTAGTTTATAAATATT
* *
3354100 ATTTATTTT-GATTTAAAAATTTT
1 ATTTATTTTAG-TTTATAAATATT
* *
3354123 A-TGATTTTATTTTATAAA
1 ATTTATTTTAGTTTATAAA
3354141 ATATACCTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
22 14 0.41
23 15 0.44
24 5 0.15
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (23 bp):
ATTTATTTTAGTTTATAAATATT
Found at i:3354141 original size:23 final size:21
Alignment explanation
Indices: 3354064--3354142 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 21
3354054 TACTCTGATA
*
3354064 TTATTTATAAAAATTTAT-TT
1 TTATTTATAAAATTTTATATT
3354084 TTAGTTTATAAATATTATT-TATT
1 TTA-TTTATAAA-ATT-TTATATT
3354107 TTGATTTA-AAAATTTTATGATT
1 TT-ATTTATAAAATTTTAT-ATT
3354129 TTATTTTATAAAAT
1 TTA-TTTATAAAAT
3354143 ATACCTCATA
Statistics
Matches: 49, Mismatches: 1, Indels: 15
0.75 0.02 0.23
Matches are distributed among these distances:
20 5 0.10
21 13 0.27
22 15 0.31
23 15 0.31
24 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TTATTTATAAAATTTTATATT
Found at i:3363565 original size:3 final size:3
Alignment explanation
Indices: 3363557--3363610 Score: 74
Period size: 3 Copynumber: 18.3 Consensus size: 3
3363547 AACGGTAGTG
* *
3363557 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA A-A AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
3363604 AAA ATA A
1 ATA ATA A
3363611 AAAAATTTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:3364599 original size:27 final size:24
Alignment explanation
Indices: 3364533--3364599 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 24
3364523 ATATATATTT
3364533 AATAAATATATTTTTATTAAATAA
1 AATAAATATATTTTTATTAAATAA
* * *
3364557 TATAAATTATTATTTTAGATTAATTAA
1 AATAAA-TA-TATTTT-TATTAAATAA
3364584 AATTAAATATATTTTT
1 AA-TAAATATATTTTT
3364600 TTGAAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 12 0.35
27 11 0.32
28 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (24 bp):
AATAAATATATTTTTATTAAATAA
Found at i:3365777 original size:26 final size:26
Alignment explanation
Indices: 3365747--3365798 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
3365737 GTCTCAATTT
3365747 GTTAAATTCTTTTATTTTTTAATATG
1 GTTAAATTCTTTTATTTTTTAATATG
3365773 GTTAAATTCTTTTATTTTTTAATATG
1 GTTAAATTCTTTTATTTTTTAATATG
3365799 AAAGTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.62
Consensus pattern (26 bp):
GTTAAATTCTTTTATTTTTTAATATG
Found at i:3369543 original size:2 final size:2
Alignment explanation
Indices: 3369538--3369563 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3369528 CTCTCTCTCT
3369538 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
3369564 AATACACGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:3371170 original size:2 final size:2
Alignment explanation
Indices: 3371163--3371201 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
3371153 TTTGTATGTG
3371163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3371202 TAGTACCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3372059 original size:13 final size:12
Alignment explanation
Indices: 3372041--3372074 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3372031 TTTCAATCTA
3372041 TTAATTTAAACTT
1 TTAATTTAAA-TT
3372054 TTAATTTAAATT
1 TTAATTTAAATT
*
3372066 TAAATTTAA
1 TTAATTTAA
3372075 TTATTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (12 bp):
TTAATTTAAATT
Found at i:3372354 original size:21 final size:20
Alignment explanation
Indices: 3372318--3372356 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3372308 AATTTGTATG
3372318 AAATAAAAATTTAAATTATA
1 AAATAAAAATTTAAATTATA
*
3372338 AAATAATAATATTAAATTA
1 AAATAAAAAT-TTAAATTA
3372357 ATATAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAAAAATTTAAATTATA
Found at i:3374671 original size:30 final size:29
Alignment explanation
Indices: 3374586--3374671 Score: 100
Period size: 30 Copynumber: 2.9 Consensus size: 29
3374576 ATTTAAATAT
* **
3374586 AAATTAAAAGTTAAGGACGTATTTGGATAC
1 AAATTAAAAGTTAAAGATTTATTT-GATAC
* * *
3374616 AAGTTAAAAATTAAAAATTTATTTGATTAC
1 AAATTAAAAGTTAAAGATTTATTTGA-TAC
3374646 AAATTAAAAGTTAAAGATTTATTTGA
1 AAATTAAAAGTTAAAGATTTATTTGA
3374672 GTATAATAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
29 2 0.04
30 44 0.96
ACGTcount: A:0.48, C:0.03, G:0.13, T:0.36
Consensus pattern (29 bp):
AAATTAAAAGTTAAAGATTTATTTGATAC
Found at i:3374695 original size:29 final size:29
Alignment explanation
Indices: 3374605--3374698 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 29
3374595 GTTAAGGACG
*
3374605 TATTTG-GATACAAGTTAAAAATTAAAAATT
1 TATTTGAG-TACAAATTAAAAATT-AAAATT
* *
3374635 TATTTGATTACAAATTAAAAGTTAAAGATT
1 TATTTGAGTACAAATTAAAAATTAAA-ATT
*
3374665 TATTTGAGTA-TAA-TAAAAATATATAAATT
1 TATTTGAGTACAAATTAAAAAT-TA-AAATT
3374694 TATTT
1 TATTT
3374699 AAATAAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.11
29 15 0.28
30 33 0.61
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (29 bp):
TATTTGAGTACAAATTAAAAATTAAAATT
Found at i:3374708 original size:29 final size:27
Alignment explanation
Indices: 3374620--3374709 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 27
3374610 GGATACAAGT
*
3374620 TAAAAATTAAAAATTTATTTGATTACAAA
1 TAAAAATT-AAAATTTATTTGAATA-AAA
* * *
3374649 TTAAAAGTTAAAGATTTATTTGAGTATAA
1 -TAAAAATTAAA-ATTTATTTGAATAAAA
*
3374678 TAAAAATATATAAATTTATTTAAATAAAA
1 TAAAAAT-TA-AAATTTATTTGAATAAAA
3374707 TAA
1 TAA
3374710 TAAAGGTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
28 6 0.12
29 23 0.46
30 21 0.42
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (27 bp):
TAAAAATTAAAATTTATTTGAATAAAA
Found at i:3377081 original size:2 final size:2
Alignment explanation
Indices: 3377068--3377098 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
3377058 TTCATCAAGC
*
3377068 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3377099 CTCGAAACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:3380956 original size:26 final size:26
Alignment explanation
Indices: 3380922--3380976 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
3380912 TTTTATTAAA
* * *
3380922 TTTTTTCAATTATAATTATAATAATT
1 TTTTTTCAATTACAATTACAATAACT
3380948 TTTTTTCAATTACAATTACAATAACT
1 TTTTTTCAATTACAATTACAATAACT
3380974 TTT
1 TTT
3380977 ATTATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTTTCAATTACAATTACAATAACT
Done.