Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 110 of 160
Found at i:20870297 original size:120 final size:117
Alignment explanation
Indices: 20870150--20870595 Score: 510
Period size: 120 Copynumber: 3.8 Consensus size: 117
20870140 TATGCAATGA
* * * * *
20870150 AAATTAATACTTTTAACTTTTCCTCAAAAATACCTATTTTTATTGGAATTTTATTTTCAAGGAGA
1 AAATTGATACTTTCAACTTTTCCTCAAAAATACCT-TTTTGA---GAATTTTATTTTTAAGGAAA
** **
20870215 ATTGATACTTTCAACTTTTTCTTGAAAATATTTTTTTTTA-TTTTATTTTTAAGAG
62 ATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAACTTTTATTTTTAAGAG
* * * *
20870270 AAATTGATACCTTCAACTTTCCCTCAAAAATA-TTTTTTGA-AGTTTTTATTTTTAAGGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAGA-ATTTTATTTTTAAGGAAAATT
* * *
20870333 GATACTTCCAACTTTTTCTCAAAAATAATTTTTTAAAGTTTTTATTTTTAA-AG
65 GATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAA-CTTTTATTTTTAAGAG
* * *
20870386 AAAATTGATACTTTCAACTTTTTTCTTAAAAATACTCTTTTTGAAAATTTTATTTTTAAGGAAAA
1 -AAATTGATACTTTCAAC-TTTTCCTCAAAAATAC-CTTTTTGAGAATTTTATTTTTAAGGAAAA
* *
20870451 TTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAACTTTTATTTTTAAGAA
63 TTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAACTTTTATTTTTAAGAG
* * *
20870506 AAATTGATATTTTGAACTTTTTCTCAAAAATACCCTTTTTGAGAATTTTATTTTTAA-GAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATA-CCTTTTTGAGAATTTTATTTTTAAGGAAAA-T
*
20870570 TGATACTCTCAA-TTTTTC-CTAAAAAT
64 TGATACTTTCAACTTTTTCTC-AAAAAT
20870596 GTTTCTATTA
Statistics
Matches: 283, Mismatches: 31, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
114 1 0.00
115 49 0.17
116 3 0.01
117 45 0.16
118 65 0.23
119 29 0.10
120 90 0.32
121 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (117 bp):
AAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAGAATTTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAACTTTTATTTTTAAGAG
Found at i:20870335 original size:58 final size:58
Alignment explanation
Indices: 20870198--20870595 Score: 441
Period size: 58 Copynumber: 6.8 Consensus size: 58
20870188 TTTATTGGAA
* * ** **
20870198 TTTTATTTTCAAGGAGAATTGATACTTTCAACTTTTTCTTGAAAATATTTTTT--TTT
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAGT
* **
20870254 ATTTTATTTTTAA-GAGAAATTGATACCTTCAACTTTCCCTCAAAAATATTTTTTGAAGT
1 -TTTTATTTTTAAGGA-AAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAGT
* *
20870313 TTTTATTTTTAAGGAAAATTGATACTTCCAACTTTTTCTCAAAAATAATTTTTTAAAGT
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAAT-ATTTTTTGAAGT
* * **
20870372 TTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTTCTTAAAAATACTCTTTTTGAAAA
1 TTTTATTTTTAAGGAAAATTGATACTTTCAAC-TTTTTCTCAAAAATA-T-TTTTTGAAGT
**
20870433 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAAC
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAGT
* * * * *
20870491 TTTTATTTTTAAGAAAAATTGATATTTTGAACTTTTTCTCAAAAATACCCTTTTTG-AGAA
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATA--TTTTTTGAAG-T
*
20870551 TTTTATTTTTAA-GAAAATTTGATACTCTCAA-TTTTTC-CTAAAAAT
1 TTTTATTTTTAAGGAAAA-TTGATACTTTCAACTTTTTCTC-AAAAAT
20870596 GTTTCTATTA
Statistics
Matches: 295, Mismatches: 33, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
56 2 0.01
57 43 0.15
58 93 0.32
59 63 0.21
60 56 0.19
61 38 0.13
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (58 bp):
TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAGT
Found at i:20870454 original size:178 final size:174
Alignment explanation
Indices: 20870149--20870595 Score: 510
Period size: 178 Copynumber: 2.5 Consensus size: 174
20870139 TTATGCAATG
* ** * * *
20870149 AAAATTAATACTTTTAACTTTTCCTCAAAAATACCTATTTTT-ATTGGAATTTTATTTTCAAGGA
1 AAAATTGATACTTCCAACTTTTTCTCAAAAATA-C-ATTTTTGA---GAATTTTATTTTTAAAGA
* * ***
20870213 GAATTGATACTTTCAACTTTTTCTTGAAAATATTTTTTTTTATTTTATTTTTAAGAGAAATTGAT
61 AAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTAAAATTTTATTTTTAAGAGAAATTGAT
** *
20870278 ACCTTCAACTTTCCCTCAAAAATATTTTTTGAAGTTTTTATTTTTAAGG
126 ACCTTCAACTTTCCCTCAAAAATATTTTTTGAAACTTTTATTTTTAAGA
*
20870327 AAAATTGATACTTCCAACTTTTTCTCAAAAATA-ATTTTTTA-AAGTTTTTATTTTTAAAGAAAA
1 AAAATTGATACTTCCAACTTTTTCTCAAAAATACATTTTTGAGAA--TTTTATTTTTAAAGAAAA
20870390 TTGATACTTTCAACTTTTTTCTTAAAAATACTCTTTTTGAAAATTTTATTTTTAAG-GAAAATTG
64 TTGATACTTTCAAC-TTTTTCTTAAAAATA-T-TTTTT-AAAATTTTATTTTTAAGAG-AAATTG
* **
20870454 ATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAACTTTTATTTTTAAGA
124 ATACCTTCAACTTTCCCTCAAAAATATTTTTTGAAACTTTTATTTTTAAGA
* ** *
20870505 AAAATTGATATTTTGAACTTTTTCTCAAAAATACCCTTTTTGAGAATTTTATTTTT-AAGAAAAT
1 AAAATTGATACTTCCAACTTTTTCTCAAAAATA-CATTTTTGAGAATTTTATTTTTAAAGAAAA-
* *
20870569 TTGATACTCTCAA-TTTTTCCTAAAAAT
64 TTGATACTTTCAACTTTTTCTTAAAAAT
20870596 GTTTCTATTA
Statistics
Matches: 233, Mismatches: 24, Indels: 25
0.83 0.09 0.09
Matches are distributed among these distances:
172 2 0.01
174 29 0.12
175 20 0.09
176 2 0.01
177 19 0.08
178 131 0.56
179 22 0.09
180 6 0.03
181 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (174 bp):
AAAATTGATACTTCCAACTTTTTCTCAAAAATACATTTTTGAGAATTTTATTTTTAAAGAAAATT
GATACTTTCAACTTTTTCTTAAAAATATTTTTTAAAATTTTATTTTTAAGAGAAATTGATACCTT
CAACTTTCCCTCAAAAATATTTTTTGAAACTTTTATTTTTAAGA
Found at i:20872669 original size:12 final size:12
Alignment explanation
Indices: 20872652--20872684 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
20872642 TGGCTTGAAA
20872652 TGGAATTGGGTT
1 TGGAATTGGGTT
20872664 TGGAATTGGGTT
1 TGGAATTGGGTT
20872676 TGGAATTGG
1 TGGAATTGG
20872685 TATTGTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.39
Consensus pattern (12 bp):
TGGAATTGGGTT
Found at i:20873927 original size:34 final size:34
Alignment explanation
Indices: 20873870--20873961 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
20873860 AAAAATTCAA
* **
20873870 AAGAATTTTAGATTCGCGGGAATTAGAGATTCG-T
1 AAGAATTTTAGATTCACAAGAATTAGAG-TTCGAT
* *
20873904 AA-AATTTTCAGATTCACAAGAATTGGAGTTGGAT
1 AAGAATTTT-AGATTCACAAGAATTAGAGTTCGAT
* *
20873938 AAGACTTTTAGATTCGCAAGAATT
1 AAGAATTTTAGATTCACAAGAATT
20873962 GAAGATTTGC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
33 9 0.19
34 34 0.71
35 5 0.10
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.33
Consensus pattern (34 bp):
AAGAATTTTAGATTCACAAGAATTAGAGTTCGAT
Found at i:20873967 original size:17 final size:17
Alignment explanation
Indices: 20873947--20874008 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
20873937 TAAGACTTTT
*
20873947 AGATTCGCAAGAATTGA
1 AGATTTGCAAGAATTGA
*
20873964 AGATTTGCAAGACATTCA
1 AGATTTGCAAGA-ATTGA
*
20873982 A-ATTTGCAAGAATTGG
1 AGATTTGCAAGAATTGA
*
20873998 AGAGTTGCAAG
1 AGATTTGCAAG
20874009 CCTTTTATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
16 4 0.11
17 29 0.76
18 5 0.13
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (17 bp):
AGATTTGCAAGAATTGA
Found at i:20873976 original size:34 final size:33
Alignment explanation
Indices: 20873938--20874059 Score: 100
Period size: 34 Copynumber: 3.6 Consensus size: 33
20873928 GGAGTTGGAT
20873938 AAGACTTTTAGATTCGCAAGAATTGAAGATTTGC
1 AAGACTTTTAGATTCGCAAGAATTGAAGA-TTGC
* * * * *
20873972 AAGACATTCAAATTTGCAAGAATTGGAGAGTTGC
1 AAGACTTTTAGATTCGCAAGAATTGAAGA-TTGC
* * * * * **
20874006 AAGCCTTTTATATTCACAAGAAATAAAGATCAC
1 AAGACTTTTAGATTCGCAAGAATTGAAGATTGC
* *
20874039 AAAAATTTTAGATTCGCAAGA
1 AAGACTTTTAGATTCGCAAGA
20874060 TATTTAGATT
Statistics
Matches: 66, Mismatches: 22, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
33 18 0.27
34 48 0.73
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (33 bp):
AAGACTTTTAGATTCGCAAGAATTGAAGATTGC
Found at i:20875397 original size:13 final size:15
Alignment explanation
Indices: 20875372--20875405 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
20875362 TTTTTTTACC
20875372 TTTTTTATTTTTC-A
1 TTTTTTATTTTTCAA
20875386 TTTTTTA-TTTTCAA
1 TTTTTTATTTTTCAA
20875400 TTTTTT
1 TTTTTT
20875406 TTGCTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTATTTTTCAA
Found at i:20875404 original size:38 final size:37
Alignment explanation
Indices: 20875349--20875421 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 37
20875339 CTTTTCTCTC
* * *
20875349 TTTTTTTTTTTATTTTTTTTACCTTTTTTATTTTTCA
1 TTTTTTTTTTCAATTTTTTTACCTTTTTCATTTTTCA
**
20875386 TTTTTTATTTTCAATTTTTTTTGCTTTTTCATTTTT
1 TTTTTT-TTTTCAATTTTTTTACCTTTTTCATTTTT
20875422 TTCACTTCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 6 0.20
38 24 0.80
ACGTcount: A:0.11, C:0.08, G:0.01, T:0.79
Consensus pattern (37 bp):
TTTTTTTTTTCAATTTTTTTACCTTTTTCATTTTTCA
Found at i:20879049 original size:20 final size:18
Alignment explanation
Indices: 20879013--20879051 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
20879003 GTATATTTTT
*
20879013 TATAAAAATTTAAAAAAA
1 TATAAAAAGTTAAAAAAA
20879031 TATATAAAAGTTAATAAAAA
1 TATA-AAAAGTTAA-AAAAA
20879051 T
1 T
20879052 TATGATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
TATAAAAAGTTAAAAAAA
Found at i:20879813 original size:19 final size:19
Alignment explanation
Indices: 20879789--20879828 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
20879779 TGATATAATT
20879789 TTATATA-AGATTTATTTAA
1 TTATATACAGATTTA-TTAA
*
20879808 TTATATACTGATTTATTAA
1 TTATATACAGATTTATTAA
20879827 TT
1 TT
20879829 CGTTGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
TTATATACAGATTTATTAA
Found at i:20880516 original size:14 final size:14
Alignment explanation
Indices: 20880493--20880528 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
20880483 CTGTTATAAT
20880493 ATATATTTAAAATTA
1 ATATATTTAAAA-TA
20880508 ATA-ATTTAAAATA
1 ATATATTTAAAATA
20880521 ATATATTT
1 ATATATTT
20880529 TAGGATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 12 0.60
15 3 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATATTTAAAATA
Found at i:20882636 original size:29 final size:29
Alignment explanation
Indices: 20882577--20882636 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
20882567 GTCCATATAT
* **
20882577 AAAATATTTAATATAAATTTTAATTTTTA
1 AAAATATTTAATATAAATTTTAAATAATA
*
20882606 AAAATATTTAATAT-TATATTTAAATAATA
1 AAAATATTTAATATAAAT-TTTAAATAATA
20882635 AA
1 AA
20882637 TTTATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AAAATATTTAATATAAATTTTAAATAATA
Found at i:20882785 original size:30 final size:33
Alignment explanation
Indices: 20882749--20882817 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
20882739 AATTAGATAT
*
20882749 TATATTAAA-ATTTT-TTA-AATTCAAATATTA
1 TATATTAAATATTTTATTATAATTCAAAAATTA
*
20882779 TATATTAAATATTTTATTATAATTTAAAAATTA
1 TATATTAAATATTTTATTATAATTCAAAAATTA
20882812 TCATAT
1 T-ATAT
20882818 ATTAATTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 9 0.27
31 5 0.15
32 3 0.09
33 12 0.36
34 4 0.12
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (33 bp):
TATATTAAATATTTTATTATAATTCAAAAATTA
Found at i:20884840 original size:34 final size:34
Alignment explanation
Indices: 20884802--20884907 Score: 101
Period size: 34 Copynumber: 3.2 Consensus size: 34
20884792 TCAATTAATA
20884802 AATATAAATAATATACAAATAAAATATAAATGAC
1 AATATAAATAATATACAAATAAAATATAAATGAC
* * * ** * *
20884836 AATATATATAATAAAC-TATATGCATAT-ACT-AT
1 AATATAAATAATATACAAATA-AAATATAAATGAC
* *
20884868 AATATAAATAATATACAAATGAAATATAAATGAG
1 AATATAAATAATATACAAATAAAATATAAATGAC
20884902 AATATA
1 AATATA
20884908 TAACAAAGTA
Statistics
Matches: 53, Mismatches: 15, Indels: 8
0.70 0.20 0.11
Matches are distributed among these distances:
32 19 0.36
33 9 0.17
34 25 0.47
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (34 bp):
AATATAAATAATATACAAATAAAATATAAATGAC
Found at i:20884848 original size:26 final size:23
Alignment explanation
Indices: 20884797--20884898 Score: 69
Period size: 22 Copynumber: 4.7 Consensus size: 23
20884787 ATACATCAAT
20884797 TAAT-AAATATAAATAATATACA
1 TAATAAAATATAAATAATATACA
*
20884819 -AATAAAATATAAATGACAATATATA
1 TAATAAAATATAAAT---AATATACA
* *
20884844 TAATAAACTAT--ATGCATATAC-
1 TAATAAAATATAAAT-AATATACA
20884865 T-AT--AATATAAATAATATACA
1 TAATAAAATATAAATAATATACA
*
20884885 -AATGAAATATAAAT
1 TAATAAAATATAAAT
20884899 GAGAATATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
18 4 0.06
19 6 0.10
20 6 0.10
21 4 0.06
22 24 0.39
24 2 0.03
25 7 0.11
26 9 0.15
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (23 bp):
TAATAAAATATAAATAATATACA
Found at i:20884881 original size:25 final size:22
Alignment explanation
Indices: 20884819--20884877 Score: 55
Period size: 26 Copynumber: 2.4 Consensus size: 22
20884809 ATAATATACA
20884819 AATAAAATATAAATGACAATATATAT
1 AATAAAATAT--ATG-C-ATATATAT
*
20884845 AATAAACTATATGCATATACTAT
1 AATAAAATATATGCATATA-TAT
20884868 AATATAAATA
1 AATA-AAATA
20884878 ATATACAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 5 0.17
23 8 0.28
24 7 0.24
26 9 0.31
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (22 bp):
AATAAAATATATGCATATATAT
Found at i:20888175 original size:26 final size:26
Alignment explanation
Indices: 20888128--20888192 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
20888118 TAATTCCAAA
** **
20888128 ATTTTTATTAAAATATTTTATTTTTT
1 ATTTTTATTAAAATATAATATTAATT
20888154 ATTTTTATTGAAAATA-AATATTAATT
1 ATTTTTATT-AAAATATAATATTAATT
*
20888180 ATTATTATTAAAA
1 ATTTTTATTAAAA
20888193 CTTTATCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 4 0.12
26 23 0.70
27 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (26 bp):
ATTTTTATTAAAATATAATATTAATT
Found at i:20888432 original size:14 final size:14
Alignment explanation
Indices: 20888413--20888440 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20888403 ATAATCAAAC
20888413 AAATAAAATAAATA
1 AAATAAAATAAATA
20888427 AAATAAAATAAATA
1 AAATAAAATAAATA
20888441 CCTAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAAATA
Found at i:20889522 original size:42 final size:42
Alignment explanation
Indices: 20889421--20889919 Score: 336
Period size: 42 Copynumber: 12.2 Consensus size: 42
20889411 AAGGCTCATG
* * * * **
20889421 AATAAATAAGGCTCATTTAAATAGAAGTTC-ATGACTTTTGATA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAAC-TTTGA-A
* * *
20889464 AATGAATAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
* * * * * * *
20889506 AACAAATAAGGTTCCTCTAAACAGAGACTCAACGATTTTAAA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
* **
20889548 AAGAAATAAGGCTTTTCTAAATAGAGGCT---CAAC---G--
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
* * * *
20889582 AATAAATAAGGCTCTTTTAAACAGAGACT---CAA---TG--
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
**
20889616 AATAAATAAGGCTCCTCTAAATAGAGGCTC-ATGACTTTTGATA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAAC-TTTGA-A
* * * * *
20889659 AATGAATAAAGCTCTTCTAAATAGAGGCTCAATAACTTTGGA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
* * *
20889701 AATAAATAAGGCTCCTTTAAATAGAGGCTCAACGACTTTAAA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
* *
20889743 AATAAATAAAGCTCCTCTAAATA-AGGGCTTAACAACTTTGAA
1 AATAAATAAGGCTCCTCTAAATAGA-GGCTCAACAACTTTGAA
* * * * **
20889785 AATAAATAAGGCTCTTCTAAATAGAAGTTTAATGACTTTGAAA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTG-AA
* * * *
20889828 AATAAATAAGGCTCTTCTAAATAAAAGTTCAACAACTTTGAAA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTG-AA
* * * * *
20889871 AATAAATAAAGTTACTCTAAACAAAGGCTCAACAACTTT-AA
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
*
20889912 AAAAAATA
1 AATAAATA
20889920 GAAGCTTAAC
Statistics
Matches: 368, Mismatches: 73, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
34 53 0.14
36 1 0.00
39 2 0.01
40 2 0.01
41 10 0.03
42 160 0.43
43 133 0.36
44 7 0.02
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.27
Consensus pattern (42 bp):
AATAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTTGAA
Found at i:20889591 original size:34 final size:34
Alignment explanation
Indices: 20889551--20889646 Score: 131
Period size: 34 Copynumber: 2.8 Consensus size: 34
20889541 TTTTAAAAAG
20889551 AAATAAGGCTTTTCTAAATAGAGGCTCAACGAAT
1 AAATAAGGCTTTTCTAAATAGAGGCTCAACGAAT
* * *
20889585 AAATAAGGCTCTTT-TAAACAGAGACTCAATGAAT
1 AAATAAGGCT-TTTCTAAATAGAGGCTCAACGAAT
**
20889619 AAATAAGGCTCCTCTAAATAGAGGCTCA
1 AAATAAGGCTTTTCTAAATAGAGGCTCA
20889647 TGACTTTTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
33 1 0.02
34 49 0.92
35 3 0.06
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (34 bp):
AAATAAGGCTTTTCTAAATAGAGGCTCAACGAAT
Found at i:20889713 original size:85 final size:83
Alignment explanation
Indices: 20889616--20889879 Score: 323
Period size: 85 Copynumber: 3.1 Consensus size: 83
20889606 AGACTCAATG
* *
20889616 AATAAATAAGGCTCCTCTAAATAGAGGCTCATGACTTTTGATAAATGAATAAAGCTCTTCTAAAT
1 AATAAATAAGGCTCCTCTAAATAGAGGCTCATGAC-TTTGAAAAATAAATAAAGCTCTTCTAAAT
* *
20889681 AGAGGCTCAATAACTTTGGA
65 A-AGGCTCAACAACTTTGAA
* * *
20889701 AATAAATAAGGCTCCTTTAAATAGAGGCTCAACGACTTT-AAAAATAAATAAAGCTCCTCTAAAT
1 AATAAATAAGGCTCCTCTAAATAGAGGCTC-ATGACTTTGAAAAATAAATAAAGCTCTTCTAAAT
*
20889765 AAGGGCTTAACAACTTTGAA
65 AA-GGCTCAACAACTTTGAA
* ** * *
20889785 AATAAATAAGGCTCTTCTAAATAGAAGTTTAATGACTTTGAAAAATAAATAAGGCTCTTCTAAAT
1 AATAAATAAGGCTCCTCTAAATAG-AGGCTCATGACTTTGAAAAATAAATAAAGCTCTTCTAAAT
* *
20889850 AAAAGTTCAACAACTTTGAAA
65 -AAGGCTCAACAACTTTG-AA
20889871 AATAAATAA
1 AATAAATAA
20889880 AGTTACTCTA
Statistics
Matches: 154, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
83 1 0.01
84 66 0.43
85 70 0.45
86 17 0.11
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.28
Consensus pattern (83 bp):
AATAAATAAGGCTCCTCTAAATAGAGGCTCATGACTTTGAAAAATAAATAAAGCTCTTCTAAATA
AGGCTCAACAACTTTGAA
Found at i:20890963 original size:16 final size:17
Alignment explanation
Indices: 20890934--20890966 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
20890924 TGAGTATTCT
20890934 TTTTTTGTTATTTTTTA
1 TTTTTTGTTATTTTTTA
*
20890951 TTTTTT-TTCTTTTTTA
1 TTTTTTGTTATTTTTTA
20890967 AGCATAGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.85
Consensus pattern (17 bp):
TTTTTTGTTATTTTTTA
Found at i:20891660 original size:16 final size:16
Alignment explanation
Indices: 20891639--20891673 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
20891629 AATTCTTTCT
20891639 AAAAGTCCATGTCTAC
1 AAAAGTCCATGTCTAC
20891655 AAAAGTCCATGTCTAC
1 AAAAGTCCATGTCTAC
20891671 AAA
1 AAA
20891674 TGATCTCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (16 bp):
AAAAGTCCATGTCTAC
Found at i:20897387 original size:46 final size:44
Alignment explanation
Indices: 20897289--20897387 Score: 108
Period size: 47 Copynumber: 2.2 Consensus size: 44
20897279 AAATTTTTTT
*
20897289 ATTTTTTTATTTCTAAATTTTCACCATTTGAGCCAATTTAGAAA
1 ATTTTTTTATTTCCAAATTTTCACCATTTGAGCCAATTTAGAAA
* * * * * *
20897333 TTTCTTTTTGATTTCCAAATTTTTTACTATTTGGGTCTATTTAGAAA
1 ATT-TTTTT-ATTTCCAAA-TTTTCACCATTTGAGCCAATTTAGAAA
20897380 ATTTTTTT
1 ATTTTTTT
20897388 TAATTTATCT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
44 2 0.05
45 5 0.11
46 13 0.30
47 24 0.55
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (44 bp):
ATTTTTTTATTTCCAAATTTTCACCATTTGAGCCAATTTAGAAA
Found at i:20898024 original size:5 final size:5
Alignment explanation
Indices: 20898014--20898050 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
20898004 ATAATCAAAC
20898014 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AA
20898051 TACTCAAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:20900618 original size:14 final size:14
Alignment explanation
Indices: 20900599--20900628 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
20900589 TTGCAAATGG
20900599 GTTTTGAAAACTCA
1 GTTTTGAAAACTCA
20900613 GTTTTGAAAACTCA
1 GTTTTGAAAACTCA
20900627 GT
1 GT
20900629 ATAACCTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (14 bp):
GTTTTGAAAACTCA
Found at i:20905770 original size:10 final size:10
Alignment explanation
Indices: 20905757--20905800 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
20905747 AAATATTAAT
*
20905757 AAAGGCAAAG
1 AAAGGAAAAG
*
20905767 AAAGGAAAGG
1 AAAGGAAAAG
20905777 AAAGGAAAAG
1 AAAGGAAAAG
*
20905787 AAAAGAAAAG
1 AAAGGAAAAG
20905797 AAAG
1 AAAG
20905801 TTTTTTAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.68, C:0.02, G:0.30, T:0.00
Consensus pattern (10 bp):
AAAGGAAAAG
Found at i:20907240 original size:130 final size:132
Alignment explanation
Indices: 20907026--20907286 Score: 465
Period size: 130 Copynumber: 2.0 Consensus size: 132
20907016 CAACTTAAAT
* *
20907026 ACTTAGTGTTGTGTCATTTGTTAGGTTTGTGAAAATTCGTTTATATATAAAAATATTTTTTGCCT
1 ACTTAGTGTTGTGTCACTTGTTAGGTTTGTGAAAATTCGTTTATATATAAAAATATTTTTTGCCA
20907091 TCATTTCTTACC-TTTTTTTTT-TCTTTTATAGTGGTACCTTTTTTATTATTTAAATTAATTCAT
66 TCATTTCTTACCTTTTTTTTTTCTCTTTTATAGTGGTACCTTTTTTATTATTTAAATTAATTCAT
20907154 TG
131 TG
*
20907156 ACTTAGTGTTGTGTCACTTGTTAGGTTTGTGAAAATTTGTTTATATATAAAAATATTTTTT-CCA
1 ACTTAGTGTTGTGTCACTTGTTAGGTTTGTGAAAATTCGTTTATATATAAAAATATTTTTTGCCA
20907220 TCATTTCTTACCTTTTTTTTTTTCTCTTTTATAGTGGTACCTTTTTTATTATTTAAATTAATTCA
66 TCATTTCTTACC-TTTTTTTTTTCTCTTTTATAGTGGTACCTTTTTTATTATTTAAATTAATTCA
20907285 TT
130 TT
20907287 TATGCTTTTT
Statistics
Matches: 125, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
129 14 0.11
130 59 0.47
131 9 0.07
132 43 0.34
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.56
Consensus pattern (132 bp):
ACTTAGTGTTGTGTCACTTGTTAGGTTTGTGAAAATTCGTTTATATATAAAAATATTTTTTGCCA
TCATTTCTTACCTTTTTTTTTTCTCTTTTATAGTGGTACCTTTTTTATTATTTAAATTAATTCAT
TG
Found at i:20909323 original size:18 final size:18
Alignment explanation
Indices: 20909302--20909336 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
20909292 TTTTTGTTTA
20909302 ATTTTTT-AGATTTTTTGG
1 ATTTTTTGA-ATTTTTTGG
20909320 ATTTTTTGAATTTTTTG
1 ATTTTTTGAATTTTTTG
20909337 ATTGAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (18 bp):
ATTTTTTGAATTTTTTGG
Found at i:20909740 original size:20 final size:20
Alignment explanation
Indices: 20909717--20909776 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
20909707 TCCTTTTTGA
*
20909717 TTTTGATTTTGATTTGATTT
1 TTTTAATTTTGATTTGATTT
*
20909737 TTTTATATTTTTATTT-ATTAT
1 TTTTA-ATTTTGATTTGATT-T
*
20909758 TTTTAATTGTGA-TTGATTT
1 TTTTAATTTTGATTTGATTT
20909777 AAATGTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 3 0.09
20 15 0.45
21 15 0.45
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (20 bp):
TTTTAATTTTGATTTGATTT
Found at i:20915418 original size:14 final size:14
Alignment explanation
Indices: 20915394--20915433 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
20915384 ACATTTTTAC
20915394 TTTT-AAAACATAT
1 TTTTGAAAACATAT
*
20915407 TTTTGGAAACATA-
1 TTTTGAAAACATAT
20915420 TTTTGAAAACATAT
1 TTTTGAAAACATAT
20915434 GCATGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (14 bp):
TTTTGAAAACATAT
Found at i:20915589 original size:17 final size:18
Alignment explanation
Indices: 20915553--20915590 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
20915543 AAATGCATGA
* *
20915553 TTAGTTTTAGGGTTTAGG
1 TTAGTTTGAGGGTCTAGG
20915571 TTAGTTTGA-GGTCTAGG
1 TTAGTTTGAGGGTCTAGG
20915588 TTA
1 TTA
20915591 AGATTTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (18 bp):
TTAGTTTGAGGGTCTAGG
Found at i:20915610 original size:7 final size:7
Alignment explanation
Indices: 20915598--20915642 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
20915588 TTAAGATTTT
20915598 GGTTTAG
1 GGTTTAG
20915605 GGTTTAG
1 GGTTTAG
*
20915612 GGTTTAA
1 GGTTTAG
20915619 GGTTTAG
1 GGTTTAG
20915626 GGTTT--
1 GGTTTAG
*
20915631 GATTTAG
1 GGTTTAG
20915638 GGTTT
1 GGTTT
20915643 TAGGCTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 4 0.12
7 28 0.88
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.47
Consensus pattern (7 bp):
GGTTTAG
Found at i:20915617 original size:14 final size:13
Alignment explanation
Indices: 20915553--20915642 Score: 57
Period size: 12 Copynumber: 7.2 Consensus size: 13
20915543 AAATGCATGA
*
20915553 TTAGTTTTAGGGT
1 TTAGGTTTAGGGT
20915566 TTAGG-TTA--GT
1 TTAGGTTTAGGGT
*
20915576 TTGAGGTCTA-GGT
1 TT-AGGTTTAGGGT
* * *
20915589 TAAGATTT-TGGT
1 TTAGGTTTAGGGT
20915601 TTAGGGTTTAGGGT
1 TTA-GGTTTAGGGT
20915615 TTAAGGTTTAGGGT
1 TT-AGGTTTAGGGT
*
20915629 TT-GATTTAGGGT
1 TTAGGTTTAGGGT
20915641 TT
1 TT
20915643 TAGGCTTTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
10 4 0.07
11 3 0.05
12 25 0.41
13 11 0.18
14 17 0.28
15 1 0.02
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (13 bp):
TTAGGTTTAGGGT
Found at i:20915710 original size:24 final size:22
Alignment explanation
Indices: 20915676--20915720 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
20915666 TGGTATAAGA
20915676 TTTAGGGTTTGGAATTTGAAGT
1 TTTAGGGTTTGGAATTTGAAGT
**
20915698 TTTATGGGATTTGGGGTTTGAAG
1 TTTA-GGG-TTTGGAATTTGAAG
20915721 AGATTTTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 3 0.16
24 12 0.63
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (22 bp):
TTTAGGGTTTGGAATTTGAAGT
Found at i:20915716 original size:17 final size:17
Alignment explanation
Indices: 20915696--20915755 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
20915686 GGAATTTGAA
*
20915696 GTTTTATGGGATTTGGG
1 GTTTCATGGGATTTGGG
* * * *
20915713 GTTTGAAGAGATTTTGG
1 GTTTCATGGGATTTGGG
20915730 GTTTCATAGGG-TTTGGG
1 GTTTCAT-GGGATTTGGG
*
20915747 GATTCATGG
1 GTTTCATGG
20915756 AAATGGACAT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
16 2 0.06
17 29 0.88
18 2 0.06
ACGTcount: A:0.17, C:0.03, G:0.38, T:0.42
Consensus pattern (17 bp):
GTTTCATGGGATTTGGG
Found at i:20916788 original size:19 final size:19
Alignment explanation
Indices: 20916764--20916804 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
20916754 TTTTCCTCTA
* *
20916764 ATTTTCTTCCTTTGTTTTC
1 ATTTTCTTCCCTAGTTTTC
20916783 ATTTTCTTCCCTAGTTTTC
1 ATTTTCTTCCCTAGTTTTC
20916802 ATT
1 ATT
20916805 CAAAAATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.22, G:0.05, T:0.63
Consensus pattern (19 bp):
ATTTTCTTCCCTAGTTTTC
Found at i:20918011 original size:124 final size:125
Alignment explanation
Indices: 20917803--20918044 Score: 357
Period size: 124 Copynumber: 1.9 Consensus size: 125
20917793 ATTCAATGTG
**
20917803 TTTTTGGCTAGAAAATGCCTTGAATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTT
1 TTTTTGGCTAGAAAACACCTTGAATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTT
* *
20917868 TCTAGCCAAAAATACCTTGAATAATCC-CTTCAATTTTTATGAGAGGATTATTCAGTGCA
66 TCTAGCCAAAAACACCTTGAATAATCCTATTCAATTTTTATGAGAGGATTATTCAGTGCA
* * *
20917927 TTTTTGGCTAGAAAACATCTTGAATAATGCC-TTACAAAAAATTGAATGGGGTTGTTCAA-A-GC
1 TTTTTGGCTAGAAAACACCTTGAATAAT-CCTTTACAAAAAATTGAATAGGGTTATTCAATATG-
*
20917989 ATTTCTAGTCAAAAACACCTTGAATAATCCTATTCAATTTTTATGAGAGGATTATT
64 -TTTCTAGCCAAAAACACCTTGAATAATCCTATTCAATTTTTATGAGAGGATTATT
20918045 TAAGGTGTTT
Statistics
Matches: 106, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
122 1 0.01
123 1 0.01
124 78 0.74
125 26 0.25
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (125 bp):
TTTTTGGCTAGAAAACACCTTGAATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTT
TCTAGCCAAAAACACCTTGAATAATCCTATTCAATTTTTATGAGAGGATTATTCAGTGCA
Found at i:20918077 original size:124 final size:123
Alignment explanation
Indices: 20917825--20918078 Score: 297
Period size: 124 Copynumber: 2.0 Consensus size: 123
20917815 AAATGCCTTG
*
20917825 AATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTTTCTAGCCAAAAATACCTTGAAT
1 AATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTTTCTAGCCAAAAACACCTTGAAT
* * * * *
20917890 AATCCCTTCAATTTTTATGAGAGGATTATTCAGTGCATTTTTGGCTAGAAAACATCTTG
66 AATCCATTCAATTTTTATGAGAGGATTATTAAGTG-ATTTTTGCCCAGAAAACATCTTC
* * *
20917949 AATAATGCC-TTACAAAAAATTGAATGGGGTTGTTCAA-A-GCATTTCTAGTCAAAAACACCTTG
1 AATAAT-CCTTTACAAAAAATTGAATAGGGTTATTCAATATG--TTTCTAGCCAAAAACACCTTG
20918011 AATAATCCTATTCAATTTTTATGAGAGGATTATTTAAGGTG-TTTTCTGCCC--AAAACA-CTTT
63 AATAATCC-ATTCAATTTTTATGAGAGGATTA-TTAA-GTGATTTT-TGCCCAGAAAACATC-TT
20918072 C
123 C
20918073 AATAAT
1 AATAAT
20918079 TCCCTCTCAT
Statistics
Matches: 113, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
122 1 0.01
123 2 0.02
124 73 0.65
125 28 0.25
126 6 0.05
127 3 0.03
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (123 bp):
AATAATCCTTTACAAAAAATTGAATAGGGTTATTCAATATGTTTCTAGCCAAAAACACCTTGAAT
AATCCATTCAATTTTTATGAGAGGATTATTAAGTGATTTTTGCCCAGAAAACATCTTC
Found at i:20918456 original size:200 final size:199
Alignment explanation
Indices: 20918088--20918461 Score: 497
Period size: 200 Copynumber: 1.9 Consensus size: 199
20918078 TTCCCTCTCA
* * * *
20918088 TTTTTTTTGAGATTATTCAAGGCATTTTTTGCTAAAAAATACATTGAATATTTCTTTACAAAAAA
1 TTTTTTTTGAGATTATTCAAGGCATTTTTTACTAAAAAACACA-TGAATAATCCTTTACAAAAAA
* * * * *
20918153 TTGAATGGGGTTATTTAAGTCGTTTTTAGGAAAAACGTCTTAAATAATCCCTTTCAATTTTTATA
65 TTAAATGAGGTTATTTAAGTCGTTTCTAGCAAAAACGCCTTAAATAATCCCTTTCAATTTTTATA
* *
20918218 AGAGGATTATTCATGGCATTTTTTGCCAAAAGTGCCTTCAATAATCCCTTATAAAAAATTAAATC
130 AGAGGATTATTCAAGG-ATTTTTTGCCAAAAATGCCTTCAATAATCCCTTATAAAAAATTAAATC
20918283 CTTTTC
194 CTTTTC
* *
20918289 TTTTTTTTGGGGATTATTCAAGGCATTTTTTACTAGAAAACACCA-GAATAATCCTTTA-AAAAA
1 TTTTTTTT-GAGATTATTCAAGGCATTTTTTACTAAAAAACA-CATGAATAATCCTTTACAAAAA
*
20918352 ATTAAATGAGGTTATTTAAGGT-GTTTCTAGCCAAAAACGCCTTGAATAATCCCTTTCAATTTTT
64 ATTAAATGAGGTTATTTAA-GTCGTTTCTAG-CAAAAACGCCTTAAATAATCCCTTTCAATTTTT
* *
20918416 TTTA-AGGATTATTCAAGG-TGTTTTTGCCCAAAAATGCCTTCAATAA
127 ATAAGAGGATTATTCAAGGAT-TTTTTG-CCAAAAATGCCTTCAATAA
20918462 AATTTGAAGA
Statistics
Matches: 151, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
198 1 0.01
199 6 0.04
200 60 0.40
201 53 0.35
202 29 0.19
203 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (199 bp):
TTTTTTTTGAGATTATTCAAGGCATTTTTTACTAAAAAACACATGAATAATCCTTTACAAAAAAT
TAAATGAGGTTATTTAAGTCGTTTCTAGCAAAAACGCCTTAAATAATCCCTTTCAATTTTTATAA
GAGGATTATTCAAGGATTTTTTGCCAAAAATGCCTTCAATAATCCCTTATAAAAAATTAAATCCT
TTTC
Found at i:20919678 original size:18 final size:18
Alignment explanation
Indices: 20919655--20919696 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
20919645 GGAATTTGCA
*
20919655 TTAGGAGTCTTCAAAAGT
1 TTAGGAGTCCTCAAAAGT
*
20919673 TTAGGATTCCTCAAAAGT
1 TTAGGAGTCCTCAAAAGT
*
20919691 TCAGGA
1 TTAGGA
20919697 TTCACATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31
Consensus pattern (18 bp):
TTAGGAGTCCTCAAAAGT
Found at i:20919697 original size:18 final size:18
Alignment explanation
Indices: 20919665--20919699 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20919655 TTAGGAGTCT
*
20919665 TCAAAAGTTTAGGATTCC
1 TCAAAAGTTCAGGATTCC
20919683 TCAAAAGTTCAGGATTC
1 TCAAAAGTTCAGGATTC
20919700 ACATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (18 bp):
TCAAAAGTTCAGGATTCC
Found at i:20919749 original size:30 final size:30
Alignment explanation
Indices: 20919714--20919781 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
20919704 AAAAAAGACT
*
20919714 AGGATTCACACTAAGAATTTTCAAAGGTTT
1 AGGATTCACACTAAGAATTTTCAAAGGTTC
* * * *
20919744 GGGATTCACGCTAAGAGTTTTTAAAGGTTC
1 AGGATTCACACTAAGAATTTTCAAAGGTTC
20919774 AGGATTCA
1 AGGATTCA
20919782 TATTGAAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.32
Consensus pattern (30 bp):
AGGATTCACACTAAGAATTTTCAAAGGTTC
Found at i:20919891 original size:51 final size:49
Alignment explanation
Indices: 20919736--20919910 Score: 154
Period size: 51 Copynumber: 3.4 Consensus size: 49
20919726 AAGAATTTTC
* * * **
20919736 AAAGGTTTGGGATTCACGCTAAGAGTTTTT-AAAGGTTCAGGATTCATATTGA
1 AAAGG-TTGGG-TTCACACCAAGA-TTTTTCAAAGGTTCAGGATTCACA-CAA
* * * *
20919788 AAAGGTTGGGGTACACACTAGGATTTTTCAAAGGTTCAGAATTCATCACAA
1 AAAGGTT-GGGTTCACACCAAGATTTTTCAAAGGTTCAGGATTCA-CACAA
* *
20919839 AAAAGTTAGGGTTCACACCAAGATTTTTCAAAGGTTTAGGATTCACACCAA
1 AAAGGTT-GGGTTCACACCAAGATTTTTCAAAGGTTCAGGATTCACA-CAA
*
20919890 AAAGGCTGGGATTCACACCAA
1 AAAGGTTGGG-TTCACACCAA
20919911 AAATAAATGA
Statistics
Matches: 102, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
50 10 0.10
51 83 0.81
52 9 0.09
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (49 bp):
AAAGGTTGGGTTCACACCAAGATTTTTCAAAGGTTCAGGATTCACACAA
Found at i:20920028 original size:42 final size:42
Alignment explanation
Indices: 20919955--20920153 Score: 121
Period size: 42 Copynumber: 4.9 Consensus size: 42
20919945 TACAACAGAG
* *
20919955 GTAA-TGATTCATAG-TT-AAAAACT-TCGAATTCATAGTAGA
1 GTAACTGATTCATAGTTTGAAAAACTCTAG-ATTCACAGTAGA
* *
20919994 GTAACTGATTCATAGTTTGAAAAACTCTAGATTCACAATAAA
1 GTAACTGATTCATAGTTTGAAAAACTCTAGATTCACAGTAGA
* * * * * *
20920036 GTAAAC-AATTCATAATTTGGAAGATTCTGGATTCATC-GTAGA
1 GT-AACTGATTCATAGTTTGAAAAACTCTAGATTCA-CAGTAGA
* * * *
20920078 GTAAAC-GATTCATAGTTT---AAAGTTTTGATTCGCAGTAGA
1 GT-AACTGATTCATAGTTTGAAAAACTCTAGATTCACAGTAGA
* * * * *
20920117 GTAAATGATTTATAGTTTGAAAGACTTTGGATTCACA
1 GTAACTGATTCATAGTTTGAAAAACTCTAGATTCACA
20920154 ACATAAAAAA
Statistics
Matches: 124, Mismatches: 25, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 10 0.08
41 2 0.02
42 72 0.58
43 6 0.05
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (42 bp):
GTAACTGATTCATAGTTTGAAAAACTCTAGATTCACAGTAGA
Found at i:20920296 original size:42 final size:41
Alignment explanation
Indices: 20920216--20920315 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 41
20920206 TTAGATACAC
* * *
20920216 AACAGAGTAAACGATTCATAATTGGAAGACTCTGGATTCAT
1 AACAGAGTAAATGATTCACAATTGAAAGACTCTGGATTCAT
** *
20920257 AGTAGAGTAAATGATTCACAATTTTAAAGACTCTGGATTCAT
1 AACAGAGTAAATGATTCACAA-TTGAAAGACTCTGGATTCAT
*
20920299 AACAGAGTAATTGATTC
1 AACAGAGTAAATGATTC
20920316 CTAGATTTCA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 17 0.35
42 32 0.65
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
AACAGAGTAAATGATTCACAATTGAAAGACTCTGGATTCAT
Found at i:20922337 original size:212 final size:205
Alignment explanation
Indices: 20921956--20922337 Score: 497
Period size: 212 Copynumber: 1.8 Consensus size: 205
20921946 TTAAATTTAG
* *
20921956 AAAAAAAATTAAAAAATAAAATAAAATTTGGGAATAAATATCAATTATCCAATGATGGAATTTAT
1 AAAAAAAATTAAAAAATAAAATAAAATTTGGGAATAAATATCAATTACCCAAGGATGGAATTTAT
* * *
20922021 AGAAATTTCAAATGGTAAATTTTTATAAAATTCTAGGTGAGAAATTTTATCTAAATTTGTCCTAA
66 AGAAATTTCAAATGGTAAATTTCTATAAAATTCTAGGTGAGAAATTTCATCTAAATTTATCCTAA
* * * * *
20922086 ATGGTGGATTAATTTAGATAAAGTTTCAATAACAATAATTAATATTTATTTTCCAACAAAAAATA
131 ATGATGAAATAATTTAGATAAAATTTCAACAACAATAATTAATATTTATTTTCCAACAAAAAATA
20922151 TAAAAAACGA
196 TAAAAAACGA
*
20922161 AAAAAAAATTAAAAAAATTAAAATATAAAAATTTTGGAATTAAATA-CAAATTACCCAAGGAT-G
1 AAAAAAAATT-AAAAAA-T-AAA-AT-AAAATTTGGGAA-TAAATATC-AATTACCCAAGGATGG
*
20922224 AGATTCT-TAGAAATTTCAAATGGTAAATTTCTA-AGAAATCTCTAGGTGAGAAATTTCGTCTAA
59 A-ATT-TATAGAAATTTCAAATGGTAAATTTCTATA-AAAT-TCTAGGTGAGAAATTTCATCTAA
20922287 ATTTAT-CTCAAATGATGAAATAATTTAGATAAAATTTCAAC-ACAAATAATT
120 ATTTATCCT-AAATGATGAAATAATTTAGATAAAATTTCAACAAC-AATAATT
20922338 GTATTCTTTT
Statistics
Matches: 152, Mismatches: 12, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
205 10 0.07
206 6 0.04
207 1 0.01
208 3 0.02
209 2 0.01
210 15 0.10
211 54 0.36
212 61 0.40
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (205 bp):
AAAAAAAATTAAAAAATAAAATAAAATTTGGGAATAAATATCAATTACCCAAGGATGGAATTTAT
AGAAATTTCAAATGGTAAATTTCTATAAAATTCTAGGTGAGAAATTTCATCTAAATTTATCCTAA
ATGATGAAATAATTTAGATAAAATTTCAACAACAATAATTAATATTTATTTTCCAACAAAAAATA
TAAAAAACGA
Found at i:20923279 original size:7 final size:7
Alignment explanation
Indices: 20923258--20923407 Score: 57
Period size: 7 Copynumber: 22.3 Consensus size: 7
20923248 GGTTTTAAGG
20923258 TTAGGG-
1 TTAGGGT
*
20923264 TTAGAGT
1 TTAGGGT
20923271 TTAGGGT
1 TTAGGGT
*
20923278 TTA-GGA
1 TTAGGGT
*
20923284 TTAAGGT
1 TTAGGGT
* *
20923291 TTTGGTT
1 TTAGGGT
20923298 TTA--GT
1 TTAGGGT
*
20923303 TTAAGGT
1 TTAGGGT
*
20923310 TTCGGGGT
1 TT-AGGGT
20923318 TTAGGGT
1 TTAGGGT
*
20923325 TT-GGAT
1 TTAGGGT
20923331 TT-GGGAT
1 TTAGGG-T
* *
20923338 TTAAGAT
1 TTAGGGT
*
20923345 TTAAGGT
1 TTAGGGT
*
20923352 TTAAGGT
1 TTAGGGT
*
20923359 TTAGAGTT
1 TTAG-GGT
*
20923367 TTAAGG-
1 TTAGGGT
20923373 TTAGGGT
1 TTAGGGT
*
20923380 TTAAGG-
1 TTAGGGT
20923386 TTAGGGT
1 TTAGGGT
*
20923393 TT-GGAT
1 TTAGGGT
*
20923399 TTACGGT
1 TTAGGGT
20923406 TT
1 TT
20923408 GATGGGAGAT
Statistics
Matches: 106, Mismatches: 27, Indels: 21
0.69 0.18 0.14
Matches are distributed among these distances:
5 4 0.04
6 32 0.30
7 59 0.56
8 11 0.10
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:20923384 original size:13 final size:13
Alignment explanation
Indices: 20923349--20923394 Score: 65
Period size: 13 Copynumber: 3.4 Consensus size: 13
20923339 TAAGATTTAA
20923349 GGTTTAAGGTTTAG
1 GGTTTAAGG-TTAG
*
20923363 AGTTTTAAGGTTAG
1 -GGTTTAAGGTTAG
20923377 GGTTTAAGGTTAG
1 GGTTTAAGGTTAG
20923390 GGTTT
1 GGTTT
20923395 GGATTTACGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 4 0.14
15 8 0.28
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (13 bp):
GGTTTAAGGTTAG
Found at i:20925223 original size:20 final size:21
Alignment explanation
Indices: 20925200--20925249 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
20925190 TTTTATTGAG
20925200 TTTGACCAAT-TTTGACTAAA
1 TTTGACCAATATTTGACTAAA
** *
20925220 TTTGA-CTTTATTTGACTAAT
1 TTTGACCAATATTTGACTAAA
20925240 TTTGACCAAT
1 TTTGACCAAT
20925250 GTTGGCTAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.09
20 19 0.83
21 2 0.09
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (21 bp):
TTTGACCAATATTTGACTAAA
Found at i:20926395 original size:35 final size:34
Alignment explanation
Indices: 20926290--20926398 Score: 91
Period size: 35 Copynumber: 3.2 Consensus size: 34
20926280 ACTTAGGAAG
* *
20926290 TTTT-AAAAAAGGT-AGAATTTCACCTTTGAGAAAAA
1 TTTTGAAAAAA-GTCAG-ATTTCACCATCGAG-AAAA
** *
20926325 TTTT-AAAAAAGTCAGATTTTGCCA-CTGAGAGAA
1 TTTTGAAAAAAGTCAGATTTCACCATC-GAGAAAA
*
20926358 TTTTGATAAAAGATCAGATTTCACCATCGAGAAAA
1 TTTTGAAAAAAG-TCAGATTTCACCATCGAGAAAA
20926393 TTTTGA
1 TTTTGA
20926399 CAGGACTCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
33 7 0.12
34 17 0.28
35 35 0.58
36 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (34 bp):
TTTTGAAAAAAGTCAGATTTCACCATCGAGAAAA
Found at i:20928673 original size:6 final size:7
Alignment explanation
Indices: 20928663--20928689 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
20928653 TCATTTTCCT
20928663 TTTTTCG
1 TTTTTCG
20928670 TTTTTCG
1 TTTTTCG
20928677 TTTTTCG
1 TTTTTCG
20928684 TTTTTC
1 TTTTTC
20928690 CTTTCATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.11, T:0.74
Consensus pattern (7 bp):
TTTTTCG
Found at i:20931365 original size:25 final size:25
Alignment explanation
Indices: 20931348--20931424 Score: 145
Period size: 25 Copynumber: 3.1 Consensus size: 25
20931338 ATATATAATG
*
20931348 AATGACATAATTAAAATATGCATGA
1 AATGACATAATTACAATATGCATGA
20931373 AATGACATAATTACAATATGCATGA
1 AATGACATAATTACAATATGCATGA
20931398 AATGACATAATTACAATATGCATGA
1 AATGACATAATTACAATATGCATGA
20931423 AA
1 AA
20931425 CGTAAAACAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.27
Consensus pattern (25 bp):
AATGACATAATTACAATATGCATGA
Found at i:20932085 original size:16 final size:18
Alignment explanation
Indices: 20932064--20932098 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
20932054 AATTGATTCA
20932064 TTTTC-TTCT-TTTTTTT
1 TTTTCTTTCTCTTTTTTT
20932080 TTTTCTTTCTCTTTTTTT
1 TTTTCTTTCTCTTTTTTT
20932098 T
1 T
20932099 GAAACAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 4 0.24
18 8 0.47
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTCTTTCTCTTTTTTT
Found at i:20932094 original size:17 final size:16
Alignment explanation
Indices: 20932064--20932098 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
20932054 AATTGATTCA
*
20932064 TTTTCTTCTTTTTTTT
1 TTTTCTTCTCTTTTTT
20932080 TTTTCTTTCTCTTTTTT
1 TTTTC-TTCTCTTTTTT
20932097 TT
1 TT
20932099 GAAACAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTCTTCTCTTTTTT
Found at i:20932615 original size:7 final size:7
Alignment explanation
Indices: 20932552--20932702 Score: 120
Period size: 7 Copynumber: 22.4 Consensus size: 7
20932542 GGGGTCTAGG
20932552 TTAGGGT
1 TTAGGGT
*
20932559 TTAGGTT
1 TTAGGGT
*
20932566 TTAGAGT
1 TTAGGGT
*
20932573 TTTGGG-
1 TTAGGGT
* *
20932579 CTAGGTT
1 TTAGGGT
*
20932586 TTCGGGT
1 TTAGGGT
20932593 TTAGGG-
1 TTAGGGT
20932599 TTAGGG-
1 TTAGGGT
*
20932605 TTAGAGT
1 TTAGGGT
20932612 TTAGGGTT
1 TTAGGG-T
20932620 TTA--GT
1 TTAGGGT
*
20932625 TT-GGGG
1 TTAGGGT
20932631 TTAGGGT
1 TTAGGGT
20932638 TTA-GGT
1 TTAGGGT
*
20932644 TTAAGGTT
1 TT-AGGGT
**
20932652 TTAAAGT
1 TTAGGGT
20932659 TTAGGG-
1 TTAGGGT
20932665 TTAGGGT
1 TTAGGGT
*
20932672 TTAGGAT
1 TTAGGGT
20932679 TTAGGGT
1 TTAGGGT
20932686 TTAGGGT
1 TTAGGGT
20932693 TTAGGGT
1 TTAGGGT
20932700 TTA
1 TTA
20932703 ATGTTTTAAG
Statistics
Matches: 111, Mismatches: 24, Indels: 18
0.73 0.16 0.12
Matches are distributed among these distances:
5 3 0.03
6 29 0.26
7 71 0.64
8 8 0.07
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:20932615 original size:13 final size:13
Alignment explanation
Indices: 20932550--20932693 Score: 59
Period size: 13 Copynumber: 11.3 Consensus size: 13
20932540 TTGGGGTCTA
*
20932550 GGTTAGGGTTTAG
1 GGTTAGAGTTTAG
* *
20932563 GTTTTAGAGTTTTG
1 G-GTTAGAGTTTAG
* *
20932577 GGCTAG-GTTTTCG
1 GGTTAGAG-TTTAG
*
20932590 GGTTTAG-GGTTAG
1 GG-TTAGAGTTTAG
20932603 GGTTAGAGTTTAG
1 GGTTAGAGTTTAG
** *
20932616 GGTTTTAGTTTGG
1 GGTTAGAGTTTAG
*
20932629 GGTTAGGGTTTAG
1 GGTTAGAGTTTAG
* *
20932642 GTTTA-AGGTT--
1 GGTTAGAGTTTAG
*
20932652 --TTAAAGTTTAG
1 GGTTAGAGTTTAG
*
20932663 GGTTAGGGTTTAG
1 GGTTAGAGTTTAG
* *
20932676 GATTTAGGGTTTAG
1 G-GTTAGAGTTTAG
20932690 GGTT
1 GGTT
20932694 TAGGGTTTAA
Statistics
Matches: 96, Mismatches: 25, Indels: 20
0.68 0.18 0.14
Matches are distributed among these distances:
8 3 0.03
9 4 0.04
12 8 0.08
13 55 0.57
14 26 0.27
ACGTcount: A:0.17, C:0.01, G:0.38, T:0.44
Consensus pattern (13 bp):
GGTTAGAGTTTAG
Found at i:20932620 original size:34 final size:34
Alignment explanation
Indices: 20932582--20932700 Score: 138
Period size: 34 Copynumber: 3.6 Consensus size: 34
20932572 TTTTGGGCTA
* *
20932582 GGTTTTCGGGTTTAGGGTTAGGG-TTAGAGTTTAG
1 GGTTTTAGAGTTTAGGGTTAGGGTTTAG-GTTTAG
* *
20932616 GGTTTT--AGTTTGGGGTTAGGGTTTAGGTTTAA
1 GGTTTTAGAGTTTAGGGTTAGGGTTTAGGTTTAG
*
20932648 GGTTTTAAAGTTTAGGGTTAGGGTTTAGGATTTAG
1 GGTTTTAGAGTTTAGGGTTAGGGTTTAGG-TTTAG
*
20932683 GG-TTTAGGGTTTAGGGTT
1 GGTTTTAGAGTTTAGGGTT
20932701 TAATGTTTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
32 24 0.32
33 4 0.05
34 40 0.54
35 6 0.08
ACGTcount: A:0.17, C:0.01, G:0.39, T:0.44
Consensus pattern (34 bp):
GGTTTTAGAGTTTAGGGTTAGGGTTTAGGTTTAG
Found at i:20932652 original size:26 final size:26
Alignment explanation
Indices: 20932550--20932702 Score: 121
Period size: 27 Copynumber: 5.7 Consensus size: 26
20932540 TTGGGGTCTA
*
20932550 GGTTAGGGTTTAGGTTTTAGAGTTTTG
1 GGTTAGGGTTTAGGTTTTAG-GTTTAG
* * * * *
20932577 GGCTAGGTTTTCGGGTTTAGGGTTAG
1 GGTTAGGGTTTAGGTTTTAGGTTTAG
* *
20932603 GGTTAGAGTTTAGGGTTTTA-GTTTGG
1 GGTTAGGGTTTA-GGTTTTAGGTTTAG
* *
20932629 GGTTAGGGTTTAGGTTTAAGGTTTTAAA
1 GGTTAGGGTTTAGGTTTTAGG-TTT-AG
* *
20932657 GTTTAGGG-TTAGGGTTTAGGATTTAG
1 GGTTAGGGTTTAGGTTTTAGG-TTTAG
*
20932683 GGTTTAGGGTTTAGGGTTTA
1 GG-TTAGGGTTTAGGTTTTA
20932703 ATGTTTTAAG
Statistics
Matches: 97, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
25 6 0.06
26 30 0.31
27 44 0.45
28 17 0.18
ACGTcount: A:0.17, C:0.01, G:0.38, T:0.44
Consensus pattern (26 bp):
GGTTAGGGTTTAGGTTTTAGGTTTAG
Found at i:20932708 original size:14 final size:14
Alignment explanation
Indices: 20932589--20932708 Score: 76
Period size: 13 Copynumber: 8.9 Consensus size: 14
20932579 CTAGGTTTTC
*
20932589 GGGTTT-AGGGTTA
1 GGGTTTAAGGTTTA
20932602 GGG-TT-AGAGTTTA
1 GGGTTTAAG-GTTTA
*
20932615 GGGTTTTA-GTTT-
1 GGGTTTAAGGTTTA
* *
20932627 GGGGTTAGGGTTTA
1 GGGTTTAAGGTTTA
20932641 -GGTTTAAGGTTTTA
1 GGGTTTAAGG-TTTA
** *
20932655 AAGTTT-AGGGTTA
1 GGGTTTAAGGTTTA
20932668 GGGTTT-AGGATTTA
1 GGGTTTAAGG-TTTA
*
20932682 GGGTTTAGGGTTTA
1 GGGTTTAAGGTTTA
*
20932696 GGGTTTAATGTTT
1 GGGTTTAAGGTTT
20932709 TAAGGTTGTC
Statistics
Matches: 84, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
12 9 0.11
13 35 0.42
14 33 0.39
15 7 0.08
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (14 bp):
GGGTTTAAGGTTTA
Found at i:20932708 original size:21 final size:21
Alignment explanation
Indices: 20932552--20932702 Score: 120
Period size: 20 Copynumber: 7.5 Consensus size: 21
20932542 GGGGTCTAGG
* *
20932552 TTAGGGTTTAGGTTTTAGAGT
1 TTAGGGTTTAGGGTTTAGGGT
* * * *
20932573 TTTGGG-CTAGGTTTTCGGGT
1 TTAGGGTTTAGGGTTTAGGGT
*
20932593 TTAGGG-TTAGGG-TTAGAGT
1 TTAGGGTTTAGGGTTTAGGGT
*
20932612 TTAGGGTTTTA--GTTT-GGGG
1 TTAGGG-TTTAGGGTTTAGGGT
*
20932631 TTAGGGTTTA-GGTTTAAGGTT
1 TTAGGGTTTAGGGTTT-AGGGT
**
20932652 TTAAAGTTTAGGG-TTAGGGT
1 TTAGGGTTTAGGGTTTAGGGT
*
20932672 TTAGGATTTAGGGTTTAGGGT
1 TTAGGGTTTAGGGTTTAGGGT
20932693 TTAGGGTTTA
1 TTAGGGTTTA
20932703 ATGTTTTAAG
Statistics
Matches: 102, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
18 4 0.04
19 24 0.24
20 36 0.35
21 36 0.35
22 2 0.02
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.44
Consensus pattern (21 bp):
TTAGGGTTTAGGGTTTAGGGT
Found at i:20946293 original size:12 final size:12
Alignment explanation
Indices: 20946276--20946314 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
20946266 TCATTCATCA
20946276 TTTTCTCTTTTT
1 TTTTCTCTTTTT
20946288 TTTTCT-TTTTT
1 TTTTCTCTTTTT
*
20946299 TTTTTTCCTTTTT
1 TTTTCT-CTTTTT
20946312 TTT
1 TTT
20946315 GGTTTTTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 10 0.42
12 6 0.25
13 8 0.33
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTCTCTTTTT
Found at i:20946302 original size:14 final size:14
Alignment explanation
Indices: 20946283--20946314 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
20946273 TCATTTTCTC
20946283 TTTTTTTTT-CTTT
1 TTTTTTTTTCCTTT
20946296 TTTTTTTTTCCTTT
1 TTTTTTTTTCCTTT
20946310 TTTTT
1 TTTTT
20946315 GGTTTTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (14 bp):
TTTTTTTTTCCTTT
Found at i:20947146 original size:17 final size:17
Alignment explanation
Indices: 20947107--20947149 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20947097 TGGAATCCTA
**
20947107 ATTTTTTCTCTTTTTTTC
1 ATTTTTT-TCTTTCATTC
*
20947125 CTTTTTTTCTTTCATTC
1 ATTTTTTTCTTTCATTC
20947142 ATTTTTTT
1 ATTTTTTT
20947150 TCCCTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (17 bp):
ATTTTTTTCTTTCATTC
Found at i:20949733 original size:37 final size:37
Alignment explanation
Indices: 20949651--20949741 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
20949641 TATGGAGGGT
*
20949651 GCATGTATTATC-TA-T-TGATGTGGATGAGATGGAA
1 GCATGTATTATCTTATTATGATATGGATGAGATGGAA
*
20949685 TGCATGTATTATCTTATTATGATATGTATGAGATGG-A
1 -GCATGTATTATCTTATTATGATATGGATGAGATGGAA
20949722 GACATGTATTATCTTATTAT
1 G-CATGTATTATCTTATTAT
20949742 TTCCAATCAT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
35 12 0.24
36 3 0.06
37 20 0.40
38 15 0.30
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (37 bp):
GCATGTATTATCTTATTATGATATGGATGAGATGGAA
Found at i:20953698 original size:21 final size:20
Alignment explanation
Indices: 20953647--20953701 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
20953637 GTAAAATCTC
*
20953647 TCTTTCT-TTTCAGTTTTTT
1 TCTTTCTCTTTCATTTTTTT
* *
20953666 TC-TGCTCATTCATTTTTTT
1 TCTTTCTCTTTCATTTTTTT
20953685 TCTTTTCTCTTTCATTT
1 TC-TTTCTCTTTCATTT
20953702 CCTTCCTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 3 0.11
19 14 0.50
21 11 0.39
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.69
Consensus pattern (20 bp):
TCTTTCTCTTTCATTTTTTT
Found at i:20954827 original size:29 final size:28
Alignment explanation
Indices: 20954794--20954862 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
20954784 CTTTTCAGAG
20954794 TTTTTTTTTTATGTTATGTTATGTTGTGTT
1 TTTTTTTTTTATGTT-T-TTATGTTGTGTT
* * *
20954824 TTTTTTTTGTTTTGTTTTTGTTTTGTGTT
1 TTTTTTTT-TTATGTTTTTATGTTGTGTT
20954853 TTTTTTTTTT
1 TTTTTTTTTT
20954863 TGTAGTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 18 0.51
30 9 0.26
31 6 0.17
ACGTcount: A:0.04, C:0.00, G:0.14, T:0.81
Consensus pattern (28 bp):
TTTTTTTTTTATGTTTTTATGTTGTGTT
Found at i:20954836 original size:11 final size:11
Alignment explanation
Indices: 20954820--20954865 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
20954810 TGTTATGTTG
*
20954820 TGTTTTTTTTT
1 TGTTTTGTTTT
20954831 TGTTTTGTTTT
1 TGTTTTGTTTT
20954842 TGTTTTGTGTTT
1 TGTTTTGT-TTT
20954854 T-TTTT-TTTT
1 TGTTTTGTTTT
20954863 TGT
1 TGT
20954866 AGTTTAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
9 4 0.12
10 2 0.06
11 22 0.69
12 4 0.12
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TGTTTTGTTTT
Found at i:20954839 original size:16 final size:16
Alignment explanation
Indices: 20954815--20954865 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
20954805 TGTTATGTTA
*
20954815 TGTTGTGTTTTTTTTT
1 TGTTTTGTTTTTTTTT
*
20954831 TGTTTTGTTTTTGTTT
1 TGTTTTGTTTTTTTTT
20954847 TGTGTTT-TTTTTTTTT
1 TGT-TTTGTTTTTTTTT
20954863 TGT
1 TGT
20954866 AGTTTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 28 0.90
17 3 0.10
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (16 bp):
TGTTTTGTTTTTTTTT
Found at i:20954845 original size:27 final size:27
Alignment explanation
Indices: 20954795--20954865 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
20954785 TTTTCAGAGT
*
20954795 TTTTTTTTTATGTTATG-TTATGTTGTG
1 TTTTTTTTT-TGTTTTGTTTATGTTGTG
* *
20954822 TTTTTTTTTTGTTTTGTTTTTGTTTTG
1 TTTTTTTTTTGTTTTGTTTATGTTGTG
20954849 TGTTTTTTTTT-TTTTGT
1 T-TTTTTTTTTGTTTTGT
20954866 AGTTTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 6 0.15
27 24 0.62
28 9 0.23
ACGTcount: A:0.04, C:0.00, G:0.15, T:0.80
Consensus pattern (27 bp):
TTTTTTTTTTGTTTTGTTTATGTTGTG
Found at i:20955140 original size:22 final size:22
Alignment explanation
Indices: 20955115--20955166 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
20955105 CTATGTTTGG
* *
20955115 AGGTCTTAAAGATTATACTCGA
1 AGGTCTTAAAGATTATACCCAA
*
20955137 AGGTCTTAAAGATTATGCCCAA
1 AGGTCTTAAAGATTATACCCAA
20955159 AGGTCTTA
1 AGGTCTTA
20955167 CAAATCTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (22 bp):
AGGTCTTAAAGATTATACCCAA
Found at i:20955560 original size:50 final size:50
Alignment explanation
Indices: 20955506--20955653 Score: 163
Period size: 50 Copynumber: 3.0 Consensus size: 50
20955496 AAATTCAAAA
* * * * *
20955506 TGTTTGAAAATGGCTTTTCTTAAATAAGGGCTTTGAAATTTTAAAAATCT
1 TGTTTGAAAATGGCTTTCCCTAAAGAAAGGCTTTGAAACTTTAAAAATCT
* *
20955556 TGTTTAAAAATGGCTTTCCCTAAAGAAAGGCTTTGAAACTTTAAAACTCT
1 TGTTTGAAAATGGCTTTCCCTAAAGAAAGGCTTTGAAACTTTAAAAATCT
* * * * * *
20955606 TGTTTGAAAATTG-TTCCCTCTAAATAGAGGTTTTGAAACTTTGAAAAT
1 TGTTTGAAAATGGCTTTCC-CTAAAGAAAGGCTTTGAAACTTTAAAAAT
20955654 GACTTCTTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 4 0.05
50 78 0.95
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (50 bp):
TGTTTGAAAATGGCTTTCCCTAAAGAAAGGCTTTGAAACTTTAAAAATCT
Found at i:20955672 original size:37 final size:37
Alignment explanation
Indices: 20955620--20955800 Score: 204
Period size: 37 Copynumber: 4.9 Consensus size: 37
20955610 TGAAAATTGT
* *
20955620 TCCCTCTAAATAGAGGTTTTGAAACTTTGAAAATGAC
1 TCCCTCTAAACAGAGGCTTTGAAACTTTGAAAATGAC
* * *
20955657 T-TCTTTAAAACAGAGGCTTTGAAACTTTGAAAGTGAC
1 TCCCTCT-AAACAGAGGCTTTGAAACTTTGAAAATGAC
* *
20955694 TCCCCCTAAATAGAGGCTTTGAAACTTTGAAAATTG-C
1 TCCCTCTAAACAGAGGCTTTGAAACTTTGAAAA-TGAC
* * **
20955731 TCCCTCTAAACAGAGGTTTTGAAACTTTAAAAATGGT
1 TCCCTCTAAACAGAGGCTTTGAAACTTTGAAAATGAC
* * *
20955768 TCCCCCTAAACAAAGGCTTTGAAACTTTTAAAA
1 TCCCTCTAAACAGAGGCTTTGAAACTTTGAAAA
20955801 AATCTTGTTT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
36 5 0.04
37 112 0.93
38 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (37 bp):
TCCCTCTAAACAGAGGCTTTGAAACTTTGAAAATGAC
Found at i:20955859 original size:37 final size:37
Alignment explanation
Indices: 20955808--20955890 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
20955798 AAAAATCTTG
* *
20955808 TTTGAAAATTGCTCCCCCTAAACA-AAGCTTTTGAAAC
1 TTTGAAAATGGCTCCCCATAAACAGAAGC-TTTGAAAC
*
20955845 TTTGAAAATGGCTCCCCATAAACAGAGGCTTTGAAAC
1 TTTGAAAATGGCTCCCCATAAACAGAAGCTTTGAAAC
*
20955882 TTTTAAAAT
1 TTTGAAAAT
20955891 CTTGTTTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 38 0.93
38 3 0.07
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (37 bp):
TTTGAAAATGGCTCCCCATAAACAGAAGCTTTGAAAC
Found at i:20955874 original size:89 final size:88
Alignment explanation
Indices: 20955719--20955983 Score: 383
Period size: 87 Copynumber: 3.0 Consensus size: 88
20955709 GCTTTGAAAC
* * *
20955719 TTTGAAAATTGCTCCCTCTAAACAGAGGTTTTGAAACTTTAAAAATGGTTCCCCCTAAACAAAGG
1 TTTGAAAATTGCTCCCTCTAAACAGAGGTTTTGAAACTTTGAAAATGGCTCCCCATAAACAAAGG
20955784 CTTTGAAACTTTTAAAAAATCTTG
66 CTTTGAAACTTTT-AAAAATCTTG
* * * *
20955808 TTTGAAAATTGCTCCCCCTAAACAAAGCTTTTGAAACTTTGAAAATGGCTCCCCATAAACAGAGG
1 TTTGAAAATTGCTCCCTCTAAACAGAGGTTTTGAAACTTTGAAAATGGCTCCCCATAAACAAAGG
20955873 CTTTGAAACTTTT-AAAATCTTG
66 CTTTGAAACTTTTAAAAATCTTG
* * * * * *
20955895 TTTGAAAATTGCTCTCTCTAAATAGAGGTTTTGAAACTTTGATAATGGCTTCCCTTAAACAAATG
1 TTTGAAAATTGCTCCCTCTAAACAGAGGTTTTGAAACTTTGAAAATGGCTCCCCATAAACAAAGG
20955960 CTTTGAAAC-TTTAAAAA-CTTG
66 CTTTGAAACTTTTAAAAATCTTG
20955981 TTT
1 TTT
20955984 TTCTTTTCTC
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
86 10 0.06
87 77 0.49
89 71 0.45
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (88 bp):
TTTGAAAATTGCTCCCTCTAAACAGAGGTTTTGAAACTTTGAAAATGGCTCCCCATAAACAAAGG
CTTTGAAACTTTTAAAAATCTTG
Found at i:20956918 original size:1 final size:1
Alignment explanation
Indices: 20956914--20956961 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
20956904 CATTTTTATA
* * * * *
20956914 TTTTTTTTTATTTTTTTTATTTTTTTGTTGTTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
20956962 GTCTCCTCAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.04, C:0.02, G:0.04, T:0.90
Consensus pattern (1 bp):
T
Found at i:20956923 original size:12 final size:11
Alignment explanation
Indices: 20956906--20956961 Score: 62
Period size: 11 Copynumber: 5.2 Consensus size: 11
20956896 TCATTCTTCA
20956906 TTTTTATATTTT
1 TTTTTAT-TTTT
20956918 TTTTTA--TTT
1 TTTTTATTTTT
20956927 TTTTTATTTTT
1 TTTTTATTTTT
* *
20956938 TTGTTGTTTTT
1 TTTTTATTTTT
*
20956949 TTTTTCTTTTT
1 TTTTTATTTTT
20956960 TT
1 TT
20956962 GTCTCCTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
9 9 0.24
11 23 0.61
12 6 0.16
ACGTcount: A:0.07, C:0.02, G:0.04, T:0.88
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:20956925 original size:10 final size:10
Alignment explanation
Indices: 20956906--20956961 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
20956896 TCATTCTTCA
*
20956906 TTTTTATATT
1 TTTTTTTATT
20956916 TTTTTTTA-T
1 TTTTTTTATT
20956925 TTTTTTTATT
1 TTTTTTTATT
*
20956935 TTTTTGTTGTT
1 TTTTT-TTATT
20956946 TTTTTTT-TCT
1 TTTTTTTAT-T
20956956 TTTTTT
1 TTTTTT
20956962 GTCTCCTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
9 10 0.24
10 22 0.54
11 9 0.22
ACGTcount: A:0.07, C:0.02, G:0.04, T:0.88
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:20965778 original size:15 final size:16
Alignment explanation
Indices: 20965758--20965790 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20965748 GTGGCAGAGA
*
20965758 CAAATTA-CTTCACAC
1 CAAATTACCTTAACAC
20965773 CAAATTACCTTAACAC
1 CAAATTACCTTAACAC
20965789 CA
1 CA
20965791 TTAATGAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.24
Consensus pattern (16 bp):
CAAATTACCTTAACAC
Found at i:20967616 original size:3 final size:3
Alignment explanation
Indices: 20967608--20967635 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
20967598 TTTGTTTCCC
20967608 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
20967636 AATATTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:20967904 original size:10 final size:10
Alignment explanation
Indices: 20967889--20967914 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
20967879 TAATAAAATT
20967889 TTAAAATTTA
1 TTAAAATTTA
20967899 TTAAAATTTA
1 TTAAAATTTA
20967909 TTAAAA
1 TTAAAA
20967915 AGATAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TTAAAATTTA
Found at i:20972204 original size:25 final size:25
Alignment explanation
Indices: 20972176--20972226 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
20972166 TAGAATAAAC
20972176 GATATAATTAAAATATGCATGAAAT
1 GATATAATTAAAATATGCATGAAAT
*
20972201 GATATGATTAAAATATGCATGAAAT
1 GATATAATTAAAATATGCATGAAAT
20972226 G
1 G
20972227 TAAAACACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (25 bp):
GATATAATTAAAATATGCATGAAAT
Found at i:20972892 original size:5 final size:5
Alignment explanation
Indices: 20972882--20972911 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
20972872 GAATTAATTC
20972882 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
20972912 TTTGGAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:20973205 original size:14 final size:14
Alignment explanation
Indices: 20973186--20973213 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20973176 ATATTTTTAC
20973186 TTTTGAAAACATAT
1 TTTTGAAAACATAT
20973200 TTTTGAAAACATAT
1 TTTTGAAAACATAT
20973214 GCATGAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TTTTGAAAACATAT
Found at i:20973226 original size:9 final size:9
Alignment explanation
Indices: 20973212--20973236 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
20973202 TTGAAAACAT
20973212 ATGCATGAA
1 ATGCATGAA
20973221 ATGCATGAA
1 ATGCATGAA
20973230 ATGCATG
1 ATGCATG
20973237 TTCATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (9 bp):
ATGCATGAA
Found at i:20973396 original size:7 final size:7
Alignment explanation
Indices: 20973384--20973622 Score: 129
Period size: 7 Copynumber: 34.6 Consensus size: 7
20973374 TTGGGATCTA
20973384 GGTTTAG
1 GGTTTAG
20973391 GGTTTAG
1 GGTTTAG
* *
20973398 GTTTTGG
1 GGTTTAG
*
20973405 GGTTTAA
1 GGTTTAG
20973412 GGTTTAG
1 GGTTTAG
* *
20973419 GTTTTGG
1 GGTTTAG
20973426 GGTTTAG
1 GGTTTAG
20973433 GGTTTA-
1 GGTTTAG
* *
20973439 GGTTAAT
1 GGTTTAG
*
20973446 GGTTTGG
1 GGTTTAG
*
20973453 GGTTTAA
1 GGTTTAG
*
20973460 GATTTAG
1 GGTTTAG
20973467 GGTTTTAG
1 GG-TTTAG
20973475 GGTTT--
1 GGTTTAG
20973480 GGTTTAG
1 GGTTTAG
* *
20973487 TGTTTAA
1 GGTTTAG
20973494 GGTTT--
1 GGTTTAG
*
20973499 GGTTTAA
1 GGTTTAG
*
20973506 GGCTTAG
1 GGTTTAG
20973513 GTTAGTTT-G
1 G---GTTTAG
** *
20973522 AAATCTA-
1 -GGTTTAG
20973529 GGTTTAG
1 GGTTTAG
20973536 GGTTTAG
1 GGTTTAG
* *
20973543 GTTTTGG
1 GGTTTAG
20973550 GGTTTAG
1 GGTTTAG
20973557 GGTTTA-
1 GGTTTAG
* *
20973563 GGTTAAC
1 GGTTTAG
* *
20973570 TGTTTGG
1 GGTTTAG
*
20973577 GGTTTAA
1 GGTTTAG
20973584 GGTTTAG
1 GGTTTAG
20973591 GGTTTTAG
1 GG-TTTAG
20973599 GGTTT--
1 GGTTTAG
20973604 GGTTTAG
1 GGTTTAG
20973611 GGTTTTAG
1 GG-TTTAG
20973619 GGTT
1 GGTT
20973623 AGTTTAAGGT
Statistics
Matches: 171, Mismatches: 44, Indels: 34
0.69 0.18 0.14
Matches are distributed among these distances:
5 15 0.09
6 13 0.08
7 118 0.69
8 21 0.12
9 1 0.01
10 3 0.02
ACGTcount: A:0.15, C:0.01, G:0.37, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:20973502 original size:5 final size:6
Alignment explanation
Indices: 20973356--20973611 Score: 67
Period size: 7 Copynumber: 39.0 Consensus size: 6
20973346 CATGATTGGT
* * *
20973356 TTTATGG TTTAGG -TTA-G TTTGGG ATCTAGG TTTAGGG TTTAGG TTTTGGGG
1 TTTA-GG TTTAGG TTTAGG TTTAGG -TTTAGG TTTA-GG TTTAGG -TTT-AGG
* * *
20973407 TTTAAGG TTTAGG TTTTGGGG TTTAGGG TTTAGG TTAATGG TTTGGGG
1 TTT-AGG TTTAGG -TTT-AGG TTTA-GG TTTAGG TTTA-GG TTT-AGG
*
20973455 TTTAAGA TTTAGGG TTTTAGGG TTT-GG TTTAGTG TTTAAGG TTT-GG
1 TTT-AGG TTTA-GG -TTTA-GG TTTAGG TTTAG-G TTT-AGG TTTAGG
* ** * *
20973501 TTTAAGG CTTAGG -TTA-G TTTGAAA TCTAGG TTTAGGG TTTAGG TTTTGGGG
1 TTT-AGG TTTAGG TTTAGG TTT-AGG TTTAGG TTTA-GG TTTAGG -TTT-AGG
* * *
20973552 TTTAGGG TTTAGG TTAACTG TTTGGGG TTTAAGG TTTAGGG TTTTAGGG
1 TTTA-GG TTTAGG TTTA-GG TTT-AGG TTT-AGG TTTA-GG -TTTA-GG
20973601 TTT-GG TTTAGG
1 TTTAGG TTTAGG
20973612 GTTTTAGGGT
Statistics
Matches: 188, Mismatches: 31, Indels: 61
0.67 0.11 0.22
Matches are distributed among these distances:
4 2 0.01
5 25 0.13
6 36 0.19
7 103 0.55
8 22 0.12
ACGTcount: A:0.16, C:0.02, G:0.36, T:0.46
Consensus pattern (6 bp):
TTTAGG
Found at i:20973541 original size:124 final size:124
Alignment explanation
Indices: 20973405--20973631 Score: 384
Period size: 124 Copynumber: 1.8 Consensus size: 124
20973395 TAGGTTTTGG
20973405 GGTTTAAGGTTTAGGTTTTGGGGTTTAGGGTTTAGGTTAA-TGGTTTGGGGTTTAAGATTTAGGG
1 GGTTTAAGGTTTAGGTTTTGGGGTTTAGGGTTTAGGTTAACT-GTTTGGGGTTTAAGATTTAGGG
* * *
20973469 TTTTAGGGTTTGGTTTAGTGTTTAAGGTTTGGTTTAAGGCTTAGGTTAGTTTGAAATCTA
65 TTTTAGGGTTTGGTTTAGGGTTTAAGGGTTAGTTTAAGGCTTAGGTTAGTTTGAAATCTA
* *
20973529 GGTTTAGGGTTTAGGTTTTGGGGTTTAGGGTTTAGGTTAACTGTTTGGGGTTTAAGGTTTAGGGT
1 GGTTTAAGGTTTAGGTTTTGGGGTTTAGGGTTTAGGTTAACTGTTTGGGGTTTAAGATTTAGGGT
*
20973594 TTTAGGGTTTGGTTTAGGGTTTTAGGGTTAGTTTAAGG
66 TTTAGGGTTTGGTTTAGGGTTTAAGGGTTAGTTTAAGG
20973632 TCTAACATTC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
124 95 0.99
125 1 0.01
ACGTcount: A:0.17, C:0.01, G:0.36, T:0.46
Consensus pattern (124 bp):
GGTTTAAGGTTTAGGTTTTGGGGTTTAGGGTTTAGGTTAACTGTTTGGGGTTTAAGATTTAGGGT
TTTAGGGTTTGGTTTAGGGTTTAAGGGTTAGTTTAAGGCTTAGGTTAGTTTGAAATCTA
Found at i:20973557 original size:27 final size:28
Alignment explanation
Indices: 20973530--20973622 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 28
20973520 TGAAATCTAG
20973530 GTTTAGGGTTTAGGTTTTGGGGTTTAGG
1 GTTTAGGGTTTAGGTTTTGGGGTTTAGG
** *
20973558 GTTTA-GG-TTAACTGTTTGGGGTTTAAG
1 GTTTAGGGTTTAGGT-TTTGGGGTTTAGG
*
20973585 GTTTAGGGTTTTAGGGTTT--GGTTTAGG
1 GTTTAGGG-TTTAGGTTTTGGGGTTTAGG
20973612 GTTTTAGGGTT
1 G-TTTAGGGTT
20973623 AGTTTAAGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
26 4 0.08
27 29 0.55
28 14 0.26
29 3 0.06
30 3 0.06
ACGTcount: A:0.13, C:0.01, G:0.39, T:0.47
Consensus pattern (28 bp):
GTTTAGGGTTTAGGTTTTGGGGTTTAGG
Found at i:20973709 original size:57 final size:57
Alignment explanation
Indices: 20973587--20973717 Score: 140
Period size: 57 Copynumber: 2.3 Consensus size: 57
20973577 GGTTTAAGGT
* * *
20973587 TTAGGGTTTTAGGGTTTGGTTTAGGGTTTTAGGGTTAGTTTAAGGTCTAACATTCAAT
1 TTAGGG-TTTAGGGTTTGGTATAAGGTTTTAGGGTTAGTTTAAGGTCTAACATTCAAC
* ** * * *
20973645 TTGGGGTTTAGGGTTTGGTATAAGG-TTT-GGGTTTAGTTTTGGGTTTAGCATTTAGAC
1 TTAGGGTTTAGGGTTTGGTATAAGGTTTTAGGG-TTAGTTTAAGGTCTAACATTCA-AC
20973702 TTAGGGTTTAGGGTTT
1 TTAGGGTTTAGGGTTT
20973718 AAGGTTTGGT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
55 3 0.05
56 20 0.33
57 33 0.54
58 5 0.08
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.46
Consensus pattern (57 bp):
TTAGGGTTTAGGGTTTGGTATAAGGTTTTAGGGTTAGTTTAAGGTCTAACATTCAAC
Found at i:20973741 original size:19 final size:19
Alignment explanation
Indices: 20973706--20973743 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
20973696 TTAGACTTAG
*
20973706 GGTTTAGGGTTTAAGGTTT
1 GGTTTAGAGTTTAAGGTTT
20973725 GGTTTAGAGTGTT-AGGTTT
1 GGTTTAGAGT-TTAAGGTTT
20973744 TGGGTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (19 bp):
GGTTTAGAGTTTAAGGTTT
Found at i:20973775 original size:17 final size:17
Alignment explanation
Indices: 20973755--20973816 Score: 79
Period size: 17 Copynumber: 3.6 Consensus size: 17
20973745 GGGTTTTGAG
* *
20973755 GTTTCATGGGATTTAGC
1 GTTTCATGGAATTTAGA
*
20973772 GTTTCATAGAATTTAGA
1 GTTTCATGGAATTTAGA
* *
20973789 GTTTCATGGAATTTGGG
1 GTTTCATGGAATTTAGA
20973806 GTTTCATGGAA
1 GTTTCATGGAA
20973817 ATGGACATGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.24, C:0.08, G:0.27, T:0.40
Consensus pattern (17 bp):
GTTTCATGGAATTTAGA
Found at i:20980257 original size:34 final size:34
Alignment explanation
Indices: 20980207--20980272 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
20980197 TCATGAATTG
**
20980207 CATTATCATAACGTATAAATCTGTAGACCTATTA
1 CATTATCATAACGTATAAATCCATAGACCTATTA
* * *
20980241 CATTGTCATAATGTATAGATCCATAGACCTAT
1 CATTATCATAACGTATAAATCCATAGACCTAT
20980273 CGCCAAACCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (34 bp):
CATTATCATAACGTATAAATCCATAGACCTATTA
Found at i:20981118 original size:212 final size:203
Alignment explanation
Indices: 20980873--20981263 Score: 500
Period size: 212 Copynumber: 1.9 Consensus size: 203
20980863 TCTTTGTTCA
* * * *
20980873 AAAATTCATTATTAAATTCTCCAATCATTTGGTAAAATTTATAAT-TAGAGATTTAAATCCTT-C
1 AAAATTCATTATGAAATTCTCCAATCATTTGGTAAAATTCACAATGTA-AAATTTAAAT-CTTCC
** * ***
20980936 AATTGTTTAGTAGGATTGAAAAGTTTCTCGTTTTTTTTTTTACAAAAATTTCATTATGAAATTCT
64 AATCATTTAGTAGGATTGAAAA--TT-T-GTCTTTTTTTTT-CAAAAA-AAAATTATGAAATTCT
*
20981001 CCAATCATTTGGT-AGAATTCATAATTCAAAATTGAAATCCTCCAATCATTTGGCAGGATTGAAA
123 CCAATCATTTGGTCA-AATTCATAATT-AAAATT-AAATCCTCC-ATCATTTAGCAGGATTGAAA
20981065 AATTATCTTTTTTTTCAACC
184 AATTATCTTTTTTTTCAACC
*
20981085 AAAATTCATTATGAAATTCTCCAATCATTTGGTAGAATTCACAATGTAAAATTTAAATCTTCCAA
1 AAAATTCATTATGAAATTCTCCAATCATTTGGTAAAATTCACAATGTAAAATTTAAATCTTCCAA
* *
20981150 TCATTTGGTAGGATTGAAAATTTGTCTTTTTTTTTCAAAAAAAAATTATGAAATTCTCCAATTAT
66 TCATTTAGTAGGATTGAAAATTTGTCTTTTTTTTTCAAAAAAAAATTATGAAATTCTCCAATCAT
* * *
20981215 TTGGTCAAATTCATAATTTAAATTAAATCCTTCATCATTTAGTAGGATT
131 TTGGTCAAATTCATAATTAAAATTAAATCCTCCATCATTTAGCAGGATT
20981264 CATGGATTTT
Statistics
Matches: 159, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
203 14 0.09
204 8 0.05
205 5 0.03
206 36 0.23
207 7 0.04
208 11 0.07
209 1 0.01
210 2 0.01
211 3 0.02
212 70 0.44
213 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (203 bp):
AAAATTCATTATGAAATTCTCCAATCATTTGGTAAAATTCACAATGTAAAATTTAAATCTTCCAA
TCATTTAGTAGGATTGAAAATTTGTCTTTTTTTTTCAAAAAAAAATTATGAAATTCTCCAATCAT
TTGGTCAAATTCATAATTAAAATTAAATCCTCCATCATTTAGCAGGATTGAAAAATTATCTTTTT
TTTCAACC
Found at i:20981122 original size:104 final size:103
Alignment explanation
Indices: 20980873--20981263 Score: 452
Period size: 104 Copynumber: 3.8 Consensus size: 103
20980863 TCTTTGTTCA
* * * * *
20980873 AAAATTCATTATTAAATTCTCCAATCATTTGGTAAAATTTATAATTAGAGATTTAAATCCTTCAA
1 AAAATTCATTATGAAATTCTCCAATCATTTGGTAGAATTCATAATTA-AAATTTAAATCCTCCAA
** * **
20980938 TTGTTTAGTAGGATTGAAAAGTTTCTCGTTTTTTTTTTTAC
65 TCATTTAGTAGGATTGAAAA-TTTATC-TTTTTTTTTCAAC
*
20980979 AAAAATTTCATTATGAAATTCTCCAATCATTTGGTAGAATTCATAATTCAAAATTGAAATCCTCC
1 -AAAA-TTCATTATGAAATTCTCCAATCATTTGGTAGAATTCATAATT-AAAATTTAAATCCTCC
* * *
20981044 AATCATTTGGCAGGATTGAAAAATTATC-TTTTTTTTCAACC
63 AATCATTTAGTAGGATTGAAAATTTATCTTTTTTTTTCAA-C
* *
20981085 AAAATTCATTATGAAATTCTCCAATCATTTGGTAGAATTCACAATGTAAAATTTAAATCTTCCAA
1 AAAATTCATTATGAAATTCTCCAATCATTTGGTAGAATTCATAAT-TAAAATTTAAATCCTCCAA
* *
20981150 TCATTTGGTAGGATTGAAAATTTGTCTTTTTTTTTCAA-
65 TCATTTAGTAGGATTGAAAATTTATCTTTTTTTTTCAAC
** * * *
20981188 AAAA-AAATTATGAAATTCTCCAATTATTTGGTCA-AATTCATAATTTAAA-TTAAATCCTTC-A
1 AAAATTCATTATGAAATTCTCCAATCATTTGGT-AGAATTCATAATTAAAATTTAAATCCTCCAA
20981249 TCATTTAGTAGGATT
65 TCATTTAGTAGGATT
20981264 CATGGATTTT
Statistics
Matches: 250, Mismatches: 28, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
99 15 0.06
100 9 0.04
101 4 0.02
102 34 0.14
103 5 0.02
104 79 0.32
105 25 0.10
106 1 0.00
107 8 0.03
108 69 0.28
109 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (103 bp):
AAAATTCATTATGAAATTCTCCAATCATTTGGTAGAATTCATAATTAAAATTTAAATCCTCCAAT
CATTTAGTAGGATTGAAAATTTATCTTTTTTTTTCAAC
Found at i:20981349 original size:13 final size:14
Alignment explanation
Indices: 20981314--20981351 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
20981304 TTCTATAATG
20981314 ATAAATAAAATTGAA
1 ATAAAT-AAATTGAA
20981329 ATAAATAAATT-AA
1 ATAAATAAATTGAA
*
20981342 ATATATAAAT
1 ATAAATAAAT
20981352 AAAAAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.50
14 5 0.23
15 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
ATAAATAAATTGAA
Found at i:20982372 original size:17 final size:18
Alignment explanation
Indices: 20982339--20982376 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
20982329 GATAAACAAC
*
20982339 AAATAAGTAAGATAAAAT
1 AAATAAGTAAAATAAAAT
20982357 AAATAA-TAAAATAAAAT
1 AAATAAGTAAAATAAAAT
20982374 AAA
1 AAA
20982377 GAGGATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAGTAAAATAAAAT
Found at i:20982388 original size:18 final size:17
Alignment explanation
Indices: 20982350--20982412 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
20982340 AATAAGTAAG
*
20982350 ATAAAATAAATA-ATAAA
1 ATAAAATAAAGAGAT-AA
20982367 ATAAAATAAAGAGGATAA
1 ATAAAATAAAGA-GATAA
* *
20982385 ATAAAAATATATAGATAA
1 AT-AAAATAAAGAGATAA
*
20982403 ATAAAGTAAA
1 ATAAAATAAA
20982413 AACATAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 17 0.45
18 11 0.29
19 10 0.26
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (17 bp):
ATAAAATAAAGAGATAA
Found at i:20983321 original size:22 final size:23
Alignment explanation
Indices: 20983269--20983331 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 23
20983259 CAACAGTAAG
* * *
20983269 TTTAAAGATCATGCCT-AAAGGT
1 TTTAGAGATCATGCCTGGAAGGC
*
20983291 TTTATAGATCATGCCTGGAAGGC
1 TTTAGAGATCATGCCTGGAAGGC
* *
20983314 TTT-GAGATTATGCGTGGA
1 TTTAGAGATCATGCCTGGA
20983332 GAACTTACAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (23 bp):
TTTAGAGATCATGCCTGGAAGGC
Found at i:20989704 original size:103 final size:104
Alignment explanation
Indices: 20989400--20989843 Score: 381
Period size: 104 Copynumber: 4.3 Consensus size: 104
20989390 ATTTAACTCA
* * ** * * * * *
20989400 AAAATTTTAATCCTCCAATCATTTGGTAGGATTGGAAAGTTTTTTTTTTATTTCTACAAAAATTT
1 AAAATTTAAATCCTCTAATCATTTGGTAGGATT-GAAAAATTATCTTTT-TTTCAAAAAAAAATT
** * * * * *
20989465 CATTATGAAATTCTCTAATCATTTGGTAAAATTCATAATTC
64 CATTACAAAATTCTCCAATCATTTAGTAGAATTTATAATTT
* * * ** *
20989506 AAAATTAAAATCCTCCAATCATTTAGTAGGATT-AAAAGA--A---AATTTTC-AAAACAAATTC
1 AAAATTTAAATCCTCTAATCATTTGGTAGGATTGAAAA-ATTATCTTTTTTTCAAAAAAAAATTC
** *
20989564 ATTATGAAATTCTCCAATCATTTCGTAGAATTTATAATTT
65 ATTACAAAATTCTCCAATCATTTAGTAGAATTTATAATTT
* *
20989604 AAAAGTTAAATCCTCTAATCATTTGGTAGGATTG-AAAATT-TCTTCTTTTTTATAAAAGAAAA-
1 AAAATTTAAATCCTCTAATCATTTGGTAGGATTGAAAAATTATCTT-TTTTTCA-AAAA-AAAAT
* * * *
20989666 T-ATTACAAAATTTTTCAATCATTTGGTAAAATTTATAATTT
63 TCATTACAAAATTCTCCAATCATTTAGTAGAATTTATAATTT
*
20989707 AAAATTTAAACCCT-TCAATCATTTGGTAGGATTGAAAAATTATCTTTTTTTCAAAAAAAAATTC
1 AAAATTTAAATCCTCT-AATCATTTGGTAGGATTGAAAAATTATCTTTTTTTCAAAAAAAAATTC
* * * * *
20989771 ATTACGAAATTCTCCATTCATTCAATAGAATTCATAATTT
65 ATTACAAAATTCTCCAATCATTTAGTAGAATTTATAATTT
* * *
20989811 AAAATTTAAATCCTCCAATCATTTTGTAAGATT
1 AAAATTTAAATCCTCTAATCATTTGGTAGGATT
20989844 CATGGCTTTT
Statistics
Matches: 275, Mismatches: 46, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
97 1 0.00
98 75 0.27
99 4 0.01
100 1 0.00
102 9 0.03
103 69 0.25
104 79 0.29
105 7 0.03
106 30 0.11
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (104 bp):
AAAATTTAAATCCTCTAATCATTTGGTAGGATTGAAAAATTATCTTTTTTTCAAAAAAAAATTCA
TTACAAAATTCTCCAATCATTTAGTAGAATTTATAATTT
Found at i:20989860 original size:104 final size:103
Alignment explanation
Indices: 20989400--20989843 Score: 404
Period size: 103 Copynumber: 4.3 Consensus size: 103
20989390 ATTTAACTCA
* ** * * * *
20989400 AAAATTTTAATCCTCCAATCATTTGGTAGGATTGGAAAGTTTTTTTTTTATTTCTACAAAAATTT
1 AAAATTTAAATCCTCCAATCATTTGGTAGGATT-GAAAAATTTTCTTTT-TTTCAAAAAAAAATT
* * * * * *
20989465 CATTATGAAATTCTCTAATCATTTGGTAAAATTCATAATTC
64 CATTACGAAATTCTCCAATCA-TTCGTAGAATTTATAATTT
* * *** *
20989506 AAAATTAAAATCCTCCAATCATTTAGTAGGATT-AAAAGA-----AAATTTTC-AAAACAAATTC
1 AAAATTTAAATCCTCCAATCATTTGGTAGGATTGAAAA-ATTTTCTTTTTTTCAAAAAAAAATTC
*
20989564 ATTATGAAATTCTCCAATCATTTCGTAGAATTTATAATTT
65 ATTACGAAATTCTCCAATCA-TTCGTAGAATTTATAATTT
* * * *
20989604 AAAAGTTAAATCCTCTAATCATTTGGTAGGATTGAAAATTTCTTCTTTTTTAT-AAAAGAAAA-T
1 AAAATTTAAATCCTCCAATCATTTGGTAGGATTGAAAAATT-TTCTTTTTT-TCAAAAAAAAATT
* * * * *
20989667 -ATTACAAAATTTTTCAATCATTTGGTAAAATTTATAATTT
64 CATTACGAAATTCTCCAATCA-TTCGTAGAATTTATAATTT
* * *
20989707 AAAATTTAAACCCTTCAATCATTTGGTAGGATTGAAAAATTATCTTTTTTTCAAAAAAAAATTCA
1 AAAATTTAAATCCTCCAATCATTTGGTAGGATTGAAAAATTTTCTTTTTTTCAAAAAAAAATTCA
* * *
20989772 TTACGAAATTCTCCATTCATTCAATAGAATTCATAATTT
66 TTACGAAATTCTCCAATCATTC-GTAGAATTTATAATTT
* *
20989811 AAAATTTAAATCCTCCAATCATTTTGTAAGATT
1 AAAATTTAAATCCTCCAATCATTTGGTAGGATT
20989844 CATGGCTTTT
Statistics
Matches: 273, Mismatches: 51, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
98 72 0.26
99 8 0.03
100 1 0.00
101 1 0.00
102 16 0.06
103 73 0.27
104 65 0.24
105 7 0.03
106 30 0.11
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (103 bp):
AAAATTTAAATCCTCCAATCATTTGGTAGGATTGAAAAATTTTCTTTTTTTCAAAAAAAAATTCA
TTACGAAATTCTCCAATCATTCGTAGAATTTATAATTT
Found at i:20991102 original size:17 final size:18
Alignment explanation
Indices: 20991069--20991106 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
20991059 GATAAACAAC
*
20991069 AAATAAGTAAGATAAAAT
1 AAATAAGTAAAATAAAAT
20991087 AAATAA-TAAAATAAAAT
1 AAATAAGTAAAATAAAAT
20991104 AAA
1 AAA
20991107 AAGGATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAGTAAAATAAAAT
Found at i:20992540 original size:42 final size:42
Alignment explanation
Indices: 20992494--20992752 Score: 202
Period size: 42 Copynumber: 6.1 Consensus size: 42
20992484 TTTAGCTTTC
*
20992494 AAAGTTTCATAGCCTCTAATGAGATGAGCTCTTTTATTTTTT
1 AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTTTATTTTTT
* * *
20992536 AAAGTTTCATAGTCTCTATTGAGATGAGCTC-TTT-TGTTTT
1 AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTTTATTTTTT
* * * * ** * * **
20992576 AAAATTTCAAAGCCTCTAGTTATAAAAGTTTTTTGGTCACAAGTTTT
1 AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTT--T---ATTTTTT
* * * * * *
20992623 AAAGTTTCATAGCCTCTGGTAAGATAAACTCTTTCATTTTTA
1 AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTTTATTTTTT
* * *
20992665 AAAATTTCATGGCCTCTAGTGAGAAGAGCTCTTTTATTTTTT
1 AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTTTATTTTTT
* * *
20992707 AAAATTTCATAGCCAT-TGGTGAGATGAGCTTTTTTA-TTTTT
1 AAAGTTTCATAGCC-TCTAGTGAGATGAGCTCTTTTATTTTTT
20992748 AAAGT
1 AAAGT
20992753 CTTGAAACCT
Statistics
Matches: 168, Mismatches: 41, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
40 26 0.15
41 14 0.08
42 96 0.57
43 2 0.01
47 30 0.18
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (42 bp):
AAAGTTTCATAGCCTCTAGTGAGATGAGCTCTTTTATTTTTT
Found at i:20994552 original size:8 final size:7
Alignment explanation
Indices: 20994524--20994605 Score: 55
Period size: 7 Copynumber: 11.4 Consensus size: 7
20994514 TTGGGTTTTC
*
20994524 TTTTATA
1 TTTTATT
20994531 TTTTA-T
1 TTTTATT
20994537 TTTTATT
1 TTTTATT
20994544 TTTTGA-T
1 TTTT-ATT
*
20994551 TTTGATT
1 TTTTATT
20994558 TTATT-TT
1 TT-TTATT
20994565 GTTTTATT
1 -TTTTATT
20994573 TTCTT-TT
1 TT-TTATT
20994580 TTTATATTT
1 TTT-TA-TT
20994589 TTTTATT
1 TTTTATT
*
20994596 TATTATT
1 TTTTATT
20994603 TTT
1 TTT
20994606 AATTGTGATT
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
6 7 0.12
7 38 0.63
8 10 0.17
9 5 0.08
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.79
Consensus pattern (7 bp):
TTTTATT
Found at i:20994564 original size:30 final size:29
Alignment explanation
Indices: 20994529--20994605 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 29
20994519 TTTTCTTTTA
20994529 TATTTTATTTTTATTTTTTGATTTTGAT-TT
1 TATTTTATTTTTATTTTTT--TTTTGATATT
* *
20994559 TATTTT-GTTTTATTTTCTTTTTTTATATT
1 TATTTTATTTTTATTTT-TTTTTTGATATT
20994588 T-TTTTATTTATTATTTTT
1 TATTTTATTT-TTATTTTT
20994606 AATTGTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
28 10 0.25
29 15 0.38
30 15 0.38
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.79
Consensus pattern (29 bp):
TATTTTATTTTTATTTTTTTTTTGATATT
Found at i:20994602 original size:15 final size:14
Alignment explanation
Indices: 20994531--20994605 Score: 73
Period size: 15 Copynumber: 5.1 Consensus size: 14
20994521 TTCTTTTATA
20994531 TTTTATTTTTATTT
1 TTTTATTTTTATTT
* *
20994545 TTTGATTTTGATTT
1 TTTTATTTTTATTT
20994559 TATTT-TGTTTTATTT
1 T-TTTAT-TTTTATTT
20994574 TCTTT-TTTTATATTT
1 T-TTTATTTT-TATTT
20994589 TTTTATTTATTATTT
1 TTTTATTT-TTATTT
20994604 TT
1 TT
20994606 AATTGTGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
14 20 0.39
15 30 0.59
16 1 0.02
ACGTcount: A:0.15, C:0.01, G:0.04, T:0.80
Consensus pattern (14 bp):
TTTTATTTTTATTT
Found at i:21020206 original size:50 final size:50
Alignment explanation
Indices: 21020131--21020231 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
21020121 CAAATGAAAG
*
21020131 AGAAGCTTGAAGCAAGAAATTTAACATAATGAATATGGAATATAGATGAC
1 AGAAGCTTGAAGAAAGAAATTTAACATAATGAATATGGAATATAGATGAC
*
21020181 AGAAGCTTGGAGAAAGAAATTTAACATAATGAATATGGAATATAGATGAC
1 AGAAGCTTGAAGAAAGAAATTTAACATAATGAATATGGAATATAGATGAC
21020231 A
1 A
21020232 AAAAATTGTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.49, C:0.07, G:0.21, T:0.24
Consensus pattern (50 bp):
AGAAGCTTGAAGAAAGAAATTTAACATAATGAATATGGAATATAGATGAC
Found at i:21021537 original size:2 final size:2
Alignment explanation
Indices: 21021530--21021590 Score: 58
Period size: 2 Copynumber: 32.5 Consensus size: 2
21021520 AGATAATCTA
* * *
21021530 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT TT TT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
21021571 AT AC AT -T AT AT A- AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
21021591 CATAAATAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
1 4 0.08
2 45 0.92
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21022027 original size:30 final size:30
Alignment explanation
Indices: 21021955--21022028 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
21021945 ACAAATTATC
*
21021955 TTTTGAAAAAATTTACGTAAGACATTAAAAA
1 TTTT-AAAAATTTTACGTAAGACATTAAAAA
* * **
21021986 -TTCAAACAATTTTATGTAAGATTTTAAAAA
1 TTTTAAA-AATTTTACGTAAGACATTAAAAA
21022016 TTTTAAAAATTTT
1 TTTTAAAAATTTT
21022029 CATATTAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
29 3 0.09
30 27 0.77
31 5 0.14
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (30 bp):
TTTTAAAAATTTTACGTAAGACATTAAAAA
Found at i:21022419 original size:21 final size:19
Alignment explanation
Indices: 21022387--21022425 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
21022377 AATAATATTT
21022387 TTTTCAATTTTTTCATATA
1 TTTTCAATTTTTTCATATA
21022406 TTTTCTAATATTTTTCATAT
1 TTTTC-AAT-TTTTTCATAT
21022426 TTTGCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 10 0.56
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTCAATTTTTTCATATA
Found at i:21022435 original size:21 final size:21
Alignment explanation
Indices: 21022395--21022436 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21022385 TTTTTTCAAT
*
21022395 TTTTTCATATATTTTCTAATA
1 TTTTTCATATATTTGCTAATA
21022416 TTTTTCATAT-TTTGCATAATA
1 TTTTTCATATATTTGC-TAATA
21022437 ATTTAGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTTCATATATTTGCTAATA
Found at i:21022727 original size:2 final size:2
Alignment explanation
Indices: 21022720--21022744 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21022710 GAAACTAATT
21022720 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
21022745 TCATATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21024499 original size:25 final size:25
Alignment explanation
Indices: 21024452--21024501 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
21024442 TAAAATTAAA
**
21024452 TATTTTTAAAATAAAAGCTAGAAAT
1 TATTTTTAAAATAAAAGAAAGAAAT
21024477 TATTTTTAGAAA-AAAAGAAAGAAAT
1 TATTTTTA-AAATAAAAGAAAGAAAT
21024502 GGAACATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (25 bp):
TATTTTTAAAATAAAAGAAAGAAAT
Found at i:21027983 original size:3 final size:3
Alignment explanation
Indices: 21027975--21028025 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
21027965 CATGAGTCTT
*
21027975 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
21028023 TTA
1 TTA
21028026 ATTGAAACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:21030890 original size:11 final size:11
Alignment explanation
Indices: 21030876--21030905 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
21030866 TTTTATATTA
21030876 ATAATATAAAT
1 ATAATATAAAT
21030887 ATAATATAAAT
1 ATAATATAAAT
21030898 ATTAATAT
1 A-TAATAT
21030906 TAGTCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:21031189 original size:29 final size:29
Alignment explanation
Indices: 21031157--21031222 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
21031147 CATGTTTTTG
21031157 TATATATTCAAATTAATCGTGTCTATTCA
1 TATATATTCAAATTAATCGTGTCTATTCA
** * *
21031186 TATATATTCGTATTAGTTGTGTCTATTCA
1 TATATATTCAAATTAATCGTGTCTATTCA
*
21031215 TGTATATT
1 TATATATT
21031223 TATATTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (29 bp):
TATATATTCAAATTAATCGTGTCTATTCA
Found at i:21032184 original size:6 final size:6
Alignment explanation
Indices: 21032175--21032246 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
21032165 ATGGAGGAAA
* *
21032175 AAAGGG AAAGAAG AAAGAG AAAGAG AAAGA- AATGAGG AACA-AG AAAGGAG
1 AAAGAG AAAG-AG AAAGAG AAAGAG AAAGAG AAAGA-G AA-AGAG AAA-GAG
*
21032225 AAAGA- AAAAAG AAAGAG AAAGA
1 AAAGAG AAAGAG AAAGAG AAAGA
21032247 ATTAAGGGAC
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
5 9 0.17
6 32 0.59
7 13 0.24
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (6 bp):
AAAGAG
Found at i:21032265 original size:42 final size:43
Alignment explanation
Indices: 21032175--21032273 Score: 125
Period size: 42 Copynumber: 2.3 Consensus size: 43
21032165 ATGGAGGAAA
*
21032175 AAAGG-GAAAGAAGAAAGAGAAAGAGAAAGAAATGAGGAACAAG
1 AAAGGAGAAAGAA-AAAGAGAAAGAGAAAGAAATAAGGAACAAG
* *
21032218 AAAGGAGAAAGAAAAA-AGAAAGAGAAAGAATTAAGGGACAA-
1 AAAGGAGAAAGAAAAAGAGAAAGAGAAAGAAATAAGGAACAAG
21032259 AGAAGGAGAAA-AAAA
1 A-AAGGAGAAAGAAAA
21032274 GAAACTTTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
41 5 0.10
42 31 0.61
43 8 0.16
44 7 0.14
ACGTcount: A:0.66, C:0.02, G:0.29, T:0.03
Consensus pattern (43 bp):
AAAGGAGAAAGAAAAAGAGAAAGAGAAAGAAATAAGGAACAAG
Found at i:21033164 original size:169 final size:169
Alignment explanation
Indices: 21032885--21033217 Score: 542
Period size: 169 Copynumber: 2.0 Consensus size: 169
21032875 TGTGGGCCTA
** *
21032885 CATATTGTAGCATAAAGAGGTGAAAATTTTTTAAAGAGATTGTGACCCCTATTTGCCCTAGCTTG
1 CATATTGTAGCATAAAGAGGTGAAAATTTTTTAAAGAGATCATGACCCCTACTTGCCCTAGCTTG
* * * *
21032950 GCCGCTATTTGAGCATTGAAATGTCTTTCGAAATAGTATCTCTAATGCCCCTTGAATTTTCTCTT
66 GCCGCTATTTGAGCATCGAAATGTCTTTCAAAATAGCATCTCTAATGCCCCTTGAATTTCCTCTT
*
21033015 TGTAATAAGCCATACTTACGATTTTTTTTCAACCTCTAG
131 TGTAACAAGCCATACTTACGATTTTTTTTCAACCTCTAG
*
21033054 CATATTGTAGCATAAA-AGGGTGAAAATTTTTTAAAGAGATCATGACCCCTGCTTGCCCTAGCTT
1 CATATTGTAGCATAAAGA-GGTGAAAATTTTTTAAAGAGATCATGACCCCTACTTGCCCTAGCTT
* *
21033118 GGCCTCTATTTGAGCATCGAAATGTCTTTCAAAATAGCATCTCTAATGTCCCTTGAATTTCCTCT
65 GGCCGCTATTTGAGCATCGAAATGTCTTTCAAAATAGCATCTCTAATGCCCCTTGAATTTCCTCT
*
21033183 TTGTAACAAGCCATACTTATGATTTTTTTTCAACC
130 TTGTAACAAGCCATACTTACGATTTTTTTTCAACC
21033218 CTTAGCAAAC
Statistics
Matches: 151, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
168 1 0.01
169 150 0.99
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (169 bp):
CATATTGTAGCATAAAGAGGTGAAAATTTTTTAAAGAGATCATGACCCCTACTTGCCCTAGCTTG
GCCGCTATTTGAGCATCGAAATGTCTTTCAAAATAGCATCTCTAATGCCCCTTGAATTTCCTCTT
TGTAACAAGCCATACTTACGATTTTTTTTCAACCTCTAG
Done.