Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 111 of 160
Found at i:21033578 original size:13 final size:13
Alignment explanation
Indices: 21033527--21033578 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
21033517 TTTTAACTTT
21033527 AAGTGAAATTTAA
1 AAGTGAAATTTAA
* *
21033540 AAGAGAATTTTAA
1 AAGTGAAATTTAA
* *
21033553 AATTTTAAAATTTAA
1 AA--GTGAAATTTAA
21033568 AAGTGAAATTT
1 AAGTGAAATTT
21033579 TAGAAAGGAA
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
13 20 0.69
15 9 0.31
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.37
Consensus pattern (13 bp):
AAGTGAAATTTAA
Found at i:21033593 original size:41 final size:38
Alignment explanation
Indices: 21033512--21033591 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 38
21033502 AAAATAAAAG
*
21033512 TAAAATTTTAACTTTAAGTGAAATTTAAAAGAGAATTT
1 TAAAATTTTAAATTTAAGTGAAATTTAAAAGAGAATTT
21033550 TAAAATTTTAAAATTTAAAAGTGAAATTTTAGAAAG-GAATTT
1 TAAAATTTT-AAATTT--AAGTGAAA-TTTA-AAAGAGAATTT
21033592 AAGGTGTTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
38 9 0.25
39 5 0.14
41 8 0.22
42 10 0.28
43 4 0.11
ACGTcount: A:0.49, C:0.01, G:0.11, T:0.39
Consensus pattern (38 bp):
TAAAATTTTAAATTTAAGTGAAATTTAAAAGAGAATTT
Found at i:21035718 original size:17 final size:17
Alignment explanation
Indices: 21035682--21035718 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
21035672 TTAATTACAG
*
21035682 AAATTAAATTACACAAA
1 AAATTAAATTACAAAAA
21035699 AAATTAAATTACAAAAA
1 AAATTAAATTACAAAAA
21035716 AAA
1 AAA
21035719 AATACAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.22
Consensus pattern (17 bp):
AAATTAAATTACAAAAA
Found at i:21042617 original size:23 final size:26
Alignment explanation
Indices: 21042581--21042627 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
21042571 TTGCTTAGAC
*
21042581 TTTATATTAGGATTT-TAATTTTTTA
1 TTTATATTAGGATTTCTAAATTTTTA
21042606 TTTAT-TTA-GATTTCTAAATTTT
1 TTTATATTAGGATTTCTAAATTTT
21042628 CTTTCTTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (26 bp):
TTTATATTAGGATTTCTAAATTTTTA
Found at i:21045620 original size:13 final size:13
Alignment explanation
Indices: 21045602--21045626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21045592 AAAGCTCAAA
21045602 AATTTTAATTTTT
1 AATTTTAATTTTT
21045615 AATTTTAATTTT
1 AATTTTAATTTT
21045627 AGTCCTAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
AATTTTAATTTTT
Found at i:21046528 original size:93 final size:92
Alignment explanation
Indices: 21046397--21046662 Score: 281
Period size: 93 Copynumber: 2.9 Consensus size: 92
21046387 AAAGTTATAA
* * * * *
21046397 AATCCTACCAAACGATTAGAAAAGTTAAATCTCGAATTAAGTTTTACCAAACTATTGAAAGACTT
1 AATCCTACCAAATGATTAGAAGATTTAAATCTCGAATTAAGTATTAACAAACTATTGAAAGACTT
*
21046462 AATAAATTTTTATGAAAATAAT-TTTTTT
66 AATAAATTTTT-TGAAAA-AATATTTTTC
* * * * * *
21046490 AATCCTACTAAATGATTAGAAGATTTAAATATCAAATTAAGTACTAACAAACTATTAAAAGTCTT
1 AATCCTACCAAATGATTAGAAGATTTAAATCTCGAATTAAGTATTAACAAACTATTGAAAGACTT
*
21046555 AATGAA-TTTTTGAAAAAATAGTTTTTC
66 AATAAATTTTTTGAAAAAATA-TTTTTC
* * * * * *
21046582 AATCCTACCAATTGATT-GAAAGATTTAAATCTCGAGTTAAATCTTATC-AACTATTGAAAGATT
1 AATCCTACCAAATGATTAG-AAGATTTAAATCTCGAATTAAGTATTAACAAACTATTGAAAGACT
*
21046645 TAAT-AATTTTTTTAAAAA
65 TAATAAATTTTTTGAAAAA
21046663 TTTCATGGAA
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
90 5 0.03
91 33 0.23
92 46 0.32
93 59 0.41
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.37
Consensus pattern (92 bp):
AATCCTACCAAATGATTAGAAGATTTAAATCTCGAATTAAGTATTAACAAACTATTGAAAGACTT
AATAAATTTTTTGAAAAAATATTTTTC
Found at i:21047723 original size:13 final size:14
Alignment explanation
Indices: 21047692--21047727 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
21047682 CTACTTGTAA
*
21047692 ATTTATATATATAT
1 ATTTGTATATATAT
21047706 ATTTGTATATAT-T
1 ATTTGTATATATAT
21047719 ATTTGTATA
1 ATTTGTATA
21047728 CTAACCCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (14 bp):
ATTTGTATATATAT
Found at i:21047760 original size:21 final size:21
Alignment explanation
Indices: 21047736--21047778 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21047726 TACTAACCCT
* *
21047736 TTATGTTGTTTTTTGTATATA
1 TTATATTGTTCTTTGTATATA
*
21047757 TTATATTGTTCTTTGTTTATA
1 TTATATTGTTCTTTGTATATA
21047778 T
1 T
21047779 CATTTTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (21 bp):
TTATATTGTTCTTTGTATATA
Found at i:21049911 original size:17 final size:17
Alignment explanation
Indices: 21049885--21049922 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
21049875 GATGATATGA
21049885 TTGATACATT-GAGATTG
1 TTGATACATTAGA-ATTG
*
21049902 TTGATTCATTAGAATTG
1 TTGATACATTAGAATTG
21049919 TTGA
1 TTGA
21049923 ATAAAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (17 bp):
TTGATACATTAGAATTG
Found at i:21050306 original size:12 final size:11
Alignment explanation
Indices: 21050279--21050305 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
21050269 GATGAAAAAT
21050279 AAAAATAGCAA
1 AAAAATAGCAA
21050290 AAAAATAGCAA
1 AAAAATAGCAA
21050301 AAAAA
1 AAAAA
21050306 AAAAGAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAAATAGCAA
Found at i:21051739 original size:24 final size:22
Alignment explanation
Indices: 21051647--21051762 Score: 93
Period size: 24 Copynumber: 5.5 Consensus size: 22
21051637 GAGCTTTTCA
* *
21051647 AATGTGAATATTTGAAATTTTT
1 AATGTGAATCTTTGAAAATTTT
* **
21051669 TATGTGAATCCCT--AAATTTT
1 AATGTGAATCTTTGAAAATTTT
*
21051689 --T-TGAATCTTT--AACTTTT
1 AATGTGAATCTTTGAAAATTTT
*
21051706 GAATGTGAATCTTTTAAAATTTT
1 -AATGTGAATCTTTGAAAATTTT
21051729 CAAATGTGAATCTTTGAAAATTTT
1 --AATGTGAATCTTTGAAAATTTT
21051753 AATGTGAATC
1 AATGTGAATC
21051763 CCTAAATTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
17 13 0.17
18 1 0.01
20 7 0.09
21 9 0.12
22 19 0.25
23 6 0.08
24 21 0.28
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.47
Consensus pattern (22 bp):
AATGTGAATCTTTGAAAATTTT
Found at i:21051759 original size:22 final size:21
Alignment explanation
Indices: 21051647--21051762 Score: 89
Period size: 22 Copynumber: 5.5 Consensus size: 21
21051637 GAGCTTTTCA
* *
21051647 AATGTGAATATTTGAAATTTTT
1 AATGTGAATCTTT-AAAATTTT
* **
21051669 TATGTGAATCCCT-AAATTTT
1 AATGTGAATCTTTAAAATTTT
*
21051689 --T-TGAATCTTT-AACTTTT
1 AATGTGAATCTTTAAAATTTT
21051706 GAATGTGAATCTTTTAAAATTTT
1 -AATGTGAATC-TTTAAAATTTT
21051729 CAAATGTGAATCTTTGAAAATTTT
1 --AATGTGAATCTTT-AAAATTTT
21051753 AATGTGAATC
1 AATGTGAATC
21051763 CCTAAATTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
17 13 0.17
18 1 0.01
20 7 0.09
21 6 0.08
22 22 0.29
23 9 0.12
24 18 0.24
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.47
Consensus pattern (21 bp):
AATGTGAATCTTTAAAATTTT
Found at i:21052100 original size:17 final size:17
Alignment explanation
Indices: 21052080--21052116 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
21052070 AATCTTTACA
21052080 AATTTGAAATTCTTATG
1 AATTTGAAATTCTTATG
* *
21052097 AATTTGAAGTTTTTATG
1 AATTTGAAATTCTTATG
21052114 AAT
1 AAT
21052117 CTTCCATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (17 bp):
AATTTGAAATTCTTATG
Found at i:21052209 original size:17 final size:17
Alignment explanation
Indices: 21052168--21052211 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
21052158 CTTTGATTTC
* *
21052168 TTGTGAAACTAAAATTT
1 TTGTGAATCTAAAAGTT
* *
21052185 TTGCGAATCTGAAAGTT
1 TTGTGAATCTAAAAGTT
21052202 TTGTGAATCT
1 TTGTGAATCT
21052212 TTGAGTTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (17 bp):
TTGTGAATCTAAAAGTT
Found at i:21052262 original size:45 final size:45
Alignment explanation
Indices: 21052206--21052291 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
21052196 AAAGTTTTGT
* **
21052206 GAATCTTTGAGTTTTTACGAATTTGAAATTCTTATGAATTTTTAC
1 GAATCTTTGAGTTCTTACGAACCTGAAATTCTTATGAATTTTTAC
* ** *
21052251 GAATTTTTGAGTTCTTGTGAACCTGAAATTCTTGTGAATTT
1 GAATCTTTGAGTTCTTACGAACCTGAAATTCTTATGAATTT
21052292 GAATTCTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (45 bp):
GAATCTTTGAGTTCTTACGAACCTGAAATTCTTATGAATTTTTAC
Found at i:21052294 original size:17 final size:16
Alignment explanation
Indices: 21052262--21052300 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
21052252 AATTTTTGAG
21052262 TTCTTGTGAACCTGAAA
1 TTCTTGTGAACCTG-AA
**
21052279 TTCTTGTGAATTTGAA
1 TTCTTGTGAACCTGAA
21052295 TTCTTG
1 TTCTTG
21052301 CAAATCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (16 bp):
TTCTTGTGAACCTGAA
Found at i:21052418 original size:17 final size:17
Alignment explanation
Indices: 21052398--21052525 Score: 55
Period size: 17 Copynumber: 7.5 Consensus size: 17
21052388 TGAAATTTGG
21052398 ATGAATCTGAAATCTCT
1 ATGAATCTGAAATCTCT
*
21052415 ATGAAATTTGAAATC-CT
1 ATG-AATCTGAAATCTCT
* * *
21052432 -TGTAAATCTAAAACCTTT
1 ATG--AATCTGAAATCTCT
* * *
21052450 GTGAATTTGAAACCTCT
1 ATGAATCTGAAATCTCT
* *
21052467 ATGAAACTTGGAATCT-T
1 ATGAATC-TGAAATCTCT
* * *
21052484 GTGAATCTAAAATCTTT
1 ATGAATCTGAAATCTCT
** *
21052501 ATGAATAGGAAACCTCT
1 ATGAATCTGAAATCTCT
*
21052518 AAGAATCT
1 ATGAATCT
21052526 TGAGTCATTT
Statistics
Matches: 79, Mismatches: 26, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
16 8 0.10
17 52 0.66
18 17 0.22
19 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (17 bp):
ATGAATCTGAAATCTCT
Found at i:21052506 original size:51 final size:52
Alignment explanation
Indices: 21052398--21052528 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 52
21052388 TGAAATTTGG
* * *
21052398 ATGAATCTGAAATCTCTATGAAATTTGAAATCCTTGTAAATCTAAAACCTTT
1 ATGAATATGAAACCTCTATGAAACTTGAAATCCTTGTAAATCTAAAACCTTT
* * * * *
21052450 GTGAATTTGAAACCTCTATGAAACTTGGAAT-CTTGTGAATCTAAAATCTTT
1 ATGAATATGAAACCTCTATGAAACTTGAAATCCTTGTAAATCTAAAACCTTT
* * *
21052501 ATGAATAGGAAACCTCTAAGAATCTTGA
1 ATGAATATGAAACCTCTATGAAACTTGA
21052529 GTCATTTACA
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
51 40 0.61
52 26 0.39
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (52 bp):
ATGAATATGAAACCTCTATGAAACTTGAAATCCTTGTAAATCTAAAACCTTT
Found at i:21052603 original size:17 final size:18
Alignment explanation
Indices: 21052583--21052617 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
21052573 ACGAATATGA
*
21052583 AAATC-TTTGTGAATCTT
1 AAATCTTTTATGAATCTT
21052600 AAATCTTTTATGAATCTT
1 AAATCTTTTATGAATCTT
21052618 GGAGTCTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (18 bp):
AAATCTTTTATGAATCTT
Found at i:21054991 original size:3 final size:3
Alignment explanation
Indices: 21054983--21055009 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21054973 AAATAAACAC
21054983 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
21055010 ATTTTACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:21056076 original size:17 final size:17
Alignment explanation
Indices: 21056035--21056082 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
21056025 AATTACAAAG
* *
21056035 AAAAATAAATAAATTAT
1 AAAAATAAAGAAAATAT
*
21056052 CAAAATAAA-AAAATAT
1 AAAAATAAAGAAAATAT
21056068 AAAACATAAAGAAAA
1 AAAA-ATAAAGAAAA
21056083 AAGAAAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 9 0.35
17 13 0.50
18 4 0.15
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (17 bp):
AAAAATAAAGAAAATAT
Found at i:21056229 original size:16 final size:16
Alignment explanation
Indices: 21056208--21056240 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
21056198 CTTTTCTCTT
21056208 TCTCTCTCTCTTATTC
1 TCTCTCTCTCTTATTC
21056224 TCTCTCTCTCTTATTC
1 TCTCTCTCTCTTATTC
21056240 T
1 T
21056241 TCAAAGTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.36, G:0.00, T:0.58
Consensus pattern (16 bp):
TCTCTCTCTCTTATTC
Found at i:21056749 original size:15 final size:16
Alignment explanation
Indices: 21056720--21056749 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21056710 AGGGCTATTT
21056720 TTTCTATCTAAATTGG
1 TTTCTATCTAAATTGG
21056736 TTTCTATC-AAATTG
1 TTTCTATCTAAATTG
21056750 CTCTATGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (16 bp):
TTTCTATCTAAATTGG
Found at i:21057571 original size:12 final size:12
Alignment explanation
Indices: 21057554--21057578 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21057544 AGTTGGAGGT
21057554 ACCAAATATCCA
1 ACCAAATATCCA
21057566 ACCAAATATCCA
1 ACCAAATATCCA
21057578 A
1 A
21057579 TTATTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (12 bp):
ACCAAATATCCA
Found at i:21057797 original size:16 final size:17
Alignment explanation
Indices: 21057766--21057799 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
21057756 GTATTATAGT
21057766 ATTATTCTACAAATTAA
1 ATTATTCTACAAATTAA
*
21057783 ATTATTTTA-AAATTAA
1 ATTATTCTACAAATTAA
21057799 A
1 A
21057800 AATTCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTCTACAAATTAA
Found at i:21060822 original size:223 final size:222
Alignment explanation
Indices: 21060384--21060833 Score: 690
Period size: 223 Copynumber: 2.0 Consensus size: 222
21060374 ACCTAAAGGG
* *
21060384 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTAGGGTATAAAATGGTTCACACCACC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTAGGGTATAAAAGGGTTCACACCACC
* * *
21060449 TTCGCCTTGTGAGGCGCCTTTTGTAAGATAAAACCGTGAGGCCAGAGGGGCCAGAGCGGACAATA
66 TCCGCCTTGTGAGGCGCCTTTTGTAAGACAAAACCGTAAGGCCAGAGGGGCCAGAGCGGACAATA
21060514 CCTCACAAGGGTGTGAACCGTAGCGAGAAGGCTGATCTGGGACACCGGAAGGGTGAATGCCTGGG
131 CCTCACAAGGGTGTGAACCGTAGCGAGAAGGCTGATCTGGGACACCGGAAGGGTGAATGCCTGGG
*
21060579 TCCCGGAGCCGCGCGGGTTCGGAGCTT
196 TCCCGGAGACGCGCGGGTTCGGAGCTT
* *
21060606 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTAGGGTATAAAAGGGTTCACACCACC
* *
21060671 TCCGCCTTGTGAGGCGCCTTTTG-AAGGACAAAATCGTAAGGCCAAGGGGGGCCAGAGCGGACAA
66 TCCGCCTTGTGAGGCGCCTTTTGTAA-GACAAAACCGTAAGGCC-AGAGGGGCCAGAGCGGACAA
* * * * **
21060735 TACCTCACAAGGGTGTGAACTGTGGTG-GTCAGGCTGAT-TCGGGACGTCGGAAGGGTGAATGCC
129 TACCTCACAAGGGTGTGAACCGTAGCGAG-AAGGCTGATCT-GGGACACCGGAAGGGTGAATGCC
*
21060798 TGGGTCTCGGAGACGCGCGGGTTCGGAGCTT
192 TGGGTCCCGGAGACGCGCGGGTTCGGAGCTT
21060829 GAGTC
1 GAGTC
21060834 TCGACTCGTG
Statistics
Matches: 207, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
221 2 0.01
222 99 0.48
223 106 0.51
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.19
Consensus pattern (222 bp):
GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTAGGGTATAAAAGGGTTCACACCACC
TCCGCCTTGTGAGGCGCCTTTTGTAAGACAAAACCGTAAGGCCAGAGGGGCCAGAGCGGACAATA
CCTCACAAGGGTGTGAACCGTAGCGAGAAGGCTGATCTGGGACACCGGAAGGGTGAATGCCTGGG
TCCCGGAGACGCGCGGGTTCGGAGCTT
Found at i:21061289 original size:370 final size:372
Alignment explanation
Indices: 21060606--21061960 Score: 2166
Period size: 370 Copynumber: 3.7 Consensus size: 372
21060596 TTCGGAGCTT
*
21060606 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCACC
* * *
21060671 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAATCGTAAGGCCAAGGGGGGCCAGAGCGGACAAT
66 TCCGCCTTGTGAGGCACCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
* ** ** * *
21060736 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGGGACGTCGGAAGGGTGAATGCCTGG
131 ACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGG
* * *
21060801 GTCTCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
196 GTCCCGGAGACGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCC
*
21060866 CTATACCGTTCGATCCACGTCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
261 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
*
21060931 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAG
326 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGG
* *
21060978 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCACC
* * * *
21061043 TTCGCCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCC-A-GGGGGTCAGAGCGGACAAT
66 TCCGCCTTGTGAGGCACCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
*
21061106 ACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGA-TCTGGGACGCCAGAAGGGTGAATGCCCG
131 ACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATTC-GGGACGCCGGAAGGGTGAATGCCCG
* * *
21061170 GGTCCCAGAGCCGCGCGGGTTCGGAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGC
195 GGTCCCGGAGACGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGC
* * * *
21061235 TCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGAC
260 CCTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGAC
* *
21061300 GAGGGCGTCACGAGGTTGGATGCGGGAGAATGTCACGGACCTAAGGGG
325 GAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGG
*
21061348 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCACC
*
21061413 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
66 TCCGCCTTGTGAGGCACCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
* ** ** * *
21061478 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGAGACGCCGGAAGGGTGAATGCCTGG
131 ACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGG
* *
21061543 GTCCCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
196 GTCCCGGAGACGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCC
21061608 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
261 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
21061673 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGG
326 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGG
* *
21061720 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCACC
* * * * *
21061785 TTCGCCTTGTGAGGCACCTTTTGTAA-GACAAAACCGTGAGG-CTA-GGGGGTCAGAACAGACAA
66 TCCGCCTTGTGAGGCACCTTTTG-AAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAA
21061847 TACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGA-TCTGGGACGCCGGAAGGGTGAATGCCC
130 TACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATTC-GGGACGCCGGAAGGGTGAATGCCC
* *
21061911 GGGTCCCGGAGTCGCGCGGGTTCAGAGCTTAAGTCTCGACCCGTGACAAG
194 GGGTCCCGGAGACGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAG
21061961 GCAGGGTGGT
Statistics
Matches: 898, Mismatches: 79, Indels: 14
0.91 0.08 0.01
Matches are distributed among these distances:
369 4 0.00
370 451 0.50
371 4 0.00
372 435 0.48
373 4 0.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (372 bp):
GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCACC
TCCGCCTTGTGAGGCACCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
ACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGG
GTCCCGGAGACGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCC
CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGG
Found at i:21061678 original size:742 final size:742
Alignment explanation
Indices: 21060606--21061960 Score: 2557
Period size: 742 Copynumber: 1.8 Consensus size: 742
21060596 TTCGGAGCTT
21060606 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
*
21060671 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAATCGTAAGGCCAAGGGGGGCCAGAGCGGACAAT
66 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTAAGGCCAAGGGGGGCCAGAGCGGACAAT
* *
21060736 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGGGACGTCGGAAGGGTGAATGCCTGG
131 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGAGACGCCGGAAGGGTGAATGCCTGG
*
21060801 GTCTCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
196 GTCCCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
*
21060866 CTATACCGTTCGATCCACGTCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
261 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
21060931 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAGGAGTCCTGAATCCCACAT
326 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAGGAGTCCTGAATCCCACAT
21060996 CGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACCTTCGCCTTGTGAGGCACC
391 CGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACCTTCGCCTTGTGAGGCACC
* * * *
21061061 TTTTGTAGGATAAAACCGTGAGGCCAGGGGGTCAGAGCGGACAATACCTCACAAGGGTGTGAACC
456 TTTTGTAAGACAAAACCGTGAGGCCAGGGGGTCAGAACAGACAATACCTCACAAGGGTGTGAACC
21061126 GTGGCAGAAAGGCTGATCTGGGACGCCAGAAGGGTGAATGCCCGGGTCCCAGAGCCGCGCGGGTT
521 GTGGCAGAAAGGCTGATCTGGGACGCCAGAAGGGTGAATGCCCGGGTCCCAGAGCCGCGCGGGTT
*
21061191 CGGAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGCTCTAAACCGTTCGATCCACGC
586 CAGAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGCTCTAAACCGTTCGATCCACGC
21061256 CAAGCACCTCGAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGAT
651 CAAGCACCTCGAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGAT
21061321 GCGGGAGAATGTCACGGACCTAAGGGG
716 GCGGGAGAATGTCACGGACCTAAGGGG
21061348 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
1 GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
*
21061413 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAGCGGACAAT
66 TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTAAGGCCAAGGGGGGCCAGAGCGGACAAT
21061478 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGAGACGCCGGAAGGGTGAATGCCTGG
131 ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGAGACGCCGGAAGGGTGAATGCCTGG
21061543 GTCCCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
196 GTCCCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
21061608 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
261 CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
*
21061673 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGGGGAGTCCTGAATCCCACAT
326 AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAGGAGTCCTGAATCCCACAT
21061738 CGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACCTTCGCCTTGTGAGGCACC
391 CGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACCTTCGCCTTGTGAGGCACC
*
21061803 TTTTGTAAGACAAAACCGTGAGGCTAGGGGGTCAGAACAGACAATACCTCACAAGGGTGTGAACC
456 TTTTGTAAGACAAAACCGTGAGGCCAGGGGGTCAGAACAGACAATACCTCACAAGGGTGTGAACC
* * *
21061868 GTGGCAGAAAGGCTGATCTGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGAGTCGCGCGGGTT
521 GTGGCAGAAAGGCTGATCTGGGACGCCAGAAGGGTGAATGCCCGGGTCCCAGAGCCGCGCGGGTT
*
21061933 CAGAGCTTAAGTCTCGACCCGTGACAAG
586 CAGAGCTTAAGTCTCAACCCGTGACAAG
21061961 GCAGGGTGGT
Statistics
Matches: 596, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
742 596 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (742 bp):
GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
TCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTAAGGCCAAGGGGGGCCAGAGCGGACAAT
ACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGATTCGAGACGCCGGAAGGGTGAATGCCTGG
GTCCCGGAGACGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGACAAGTGGTATCAGAGCCAGCC
CTATACCGTTCGATCCACGCCGAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAGCCTCCGTGACG
AGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAGGAGTCCTGAATCCCACAT
CGAACATAATAGGAGGGTCCCTGGGGTATAAAATGGTTCACACCACCTTCGCCTTGTGAGGCACC
TTTTGTAAGACAAAACCGTGAGGCCAGGGGGTCAGAACAGACAATACCTCACAAGGGTGTGAACC
GTGGCAGAAAGGCTGATCTGGGACGCCAGAAGGGTGAATGCCCGGGTCCCAGAGCCGCGCGGGTT
CAGAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGCTCTAAACCGTTCGATCCACGC
CAAGCACCTCGAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGAT
GCGGGAGAATGTCACGGACCTAAGGGG
Found at i:21062711 original size:372 final size:372
Alignment explanation
Indices: 21061959--21063014 Score: 1785
Period size: 372 Copynumber: 2.8 Consensus size: 372
21061949 ACCCGTGACA
*
21061959 AGGCAGGGTGGTCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
1 AGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
*
21062024 CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTC
66 CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
* *
21062089 ACACCATCTCCGCCTTGTGAGACGCCTTTTGTAGGACAAAACCATGAGGCCAA-GGGGGCCAGAG
131 ACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAG
* **
21062153 CGGACAATACCTCACAAGGGTGTGAACCGTGGCAGAAAGGCTGATCTGGGACGCTGGAAGGGTGA
196 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATCTGGGACGCTGGAAGGGTGA
*
21062218 ATGCCCGGGTCCCAGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAG
261 ATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAG
21062283 AGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGC
326 AGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGC
* *
21062330 AGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGATGCAGGAGAATGTCACGGAC
1 AGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
* * * *
21062395 CTAAGGAGGAGTCCTGAATCCCACATTGAACATAATAGGAGGGTCACTGGGGTATAAAAGAGTTC
66 CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
* *
21062460 ACACCATCTCCGCCTTGTGAGGCGCCTTTTGAAGGACAAAACCGTGAGGCCAAGGGGGGTCAGAG
131 ACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAG
* * *
21062525 CGGACAATACCTCACAAGGGTGTGAACTGTGGTGGTCAGGCTGAT-TCGGGACGCCGGAAGGGTG
196 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATCT-GGGACGCTGGAAGGGTG
*
21062589 AATGCCCGGGTCCCGGAGCCGCACGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCA
260 AATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCA
* * * *
21062654 GAGCCAGCCCTATACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGT
325 GAGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGC
* *
21062702 AGGCAGGGTGGCCAGCCTTCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
1 AGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
21062767 CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
66 CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
* * *
21062832 ACACCATCTTCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACTGTGAGGTC-AGGGGGGCCAGAG
131 ACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAG
* *
21062896 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATCTGGAACGCTGAAAGGGTGA
196 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATCTGGGACGCTGGAAGGGTGA
* *
21062961 ATGTCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACA
261 ATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACA
21063015 GAGACATGTA
Statistics
Matches: 637, Mismatches: 45, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
371 294 0.46
372 343 0.54
ACGTcount: A:0.23, C:0.24, G:0.35, T:0.18
Consensus pattern (372 bp):
AGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGAC
CTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
ACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGGCCAGAG
CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATCTGGGACGCTGGAAGGGTGA
ATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAG
AGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGC
Found at i:21064625 original size:11 final size:11
Alignment explanation
Indices: 21064609--21064667 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
21064599 AAGGGAATGC
21064609 AAAAAAAA-AA
1 AAAAAAAAGAA
*
21064619 AAAAAAAAGAG
1 AAAAAAAAGAA
*
21064630 GAAAAAAAGAA
1 AAAAAAAAGAA
*
21064641 GAAAAAAATGAA
1 -AAAAAAAAGAA
*
21064653 AAAAAAGAGAA
1 AAAAAAAAGAA
21064664 AAAA
1 AAAA
21064668 GTTTTTGGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
10 8 0.20
11 23 0.57
12 9 0.22
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:21064636 original size:20 final size:20
Alignment explanation
Indices: 21064611--21064668 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
21064601 GGGAATGCAA
*
21064611 AAAAAAAAAAAAAAAAGAGG
1 AAAAAAAAAGAAAAAAGAGG
*
21064631 AAAAAAAGAAGAAAAAA-ATG
1 AAAAAAA-AAGAAAAAAGAGG
21064651 AAAAAAAAGAGAAAAAAG
1 AAAAAAAA-AGAAAAAAG
21064669 TTTTTGGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 1 0.03
20 24 0.73
21 8 0.24
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAGAAAAAAGAGG
Found at i:21064668 original size:9 final size:10
Alignment explanation
Indices: 21064610--21064667 Score: 64
Period size: 10 Copynumber: 5.6 Consensus size: 10
21064600 AGGGAATGCA
* *
21064610 AAAAAAAAAA
1 AAAAAAAGAG
21064620 AAAAAAAGAGG
1 AAAAAAAGA-G
21064631 AAAAAAAGAAG
1 AAAAAAAG-AG
21064642 AAAAAAATGA-
1 AAAAAAA-GAG
21064652 AAAAAAAGAG
1 AAAAAAAGAG
21064662 AAAAAA
1 AAAAAA
21064668 GTTTTTGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 2 0.05
10 21 0.50
11 17 0.40
12 2 0.05
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:21066984 original size:25 final size:25
Alignment explanation
Indices: 21066946--21067051 Score: 149
Period size: 25 Copynumber: 4.2 Consensus size: 25
21066936 GTGTGTTTTA
*
21066946 CATTTTATGCATATTTTAATTATGT
1 CATTTCATGCATATTTTAATTATGT
* * * *
21066971 CTTTTCATGTATATTGTAAATATGT
1 CATTTCATGCATATTTTAATTATGT
*
21066996 CATTTCATGCATATTTTTAATCATGT
1 CATTTCATGCATA-TTTTAATTATGT
21067022 CATTTCATGCATATTTTAATTATGT
1 CATTTCATGCATATTTTAATTATGT
21067047 CATTT
1 CATTT
21067052 ATTATATAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
25 47 0.68
26 22 0.32
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.53
Consensus pattern (25 bp):
CATTTCATGCATATTTTAATTATGT
Found at i:21067028 original size:51 final size:50
Alignment explanation
Indices: 21066946--21067051 Score: 149
Period size: 51 Copynumber: 2.1 Consensus size: 50
21066936 GTGTGTTTTA
* * * *
21066946 CATTTTATGCATATTTTAATTATGTCTTTTCATGTATATTGTAAATATGT
1 CATTTCATGCATATTTTAATCATGTCATTTCATGCATATTGTAAATATGT
* *
21066996 CATTTCATGCATATTTTTAATCATGTCATTTCATGCATATTTTAATTATGT
1 CATTTCATGCATA-TTTTAATCATGTCATTTCATGCATATTGTAAATATGT
21067047 CATTT
1 CATTT
21067052 ATTATATAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
50 12 0.24
51 37 0.76
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.53
Consensus pattern (50 bp):
CATTTCATGCATATTTTAATCATGTCATTTCATGCATATTGTAAATATGT
Found at i:21067856 original size:15 final size:16
Alignment explanation
Indices: 21067836--21067897 Score: 65
Period size: 15 Copynumber: 3.9 Consensus size: 16
21067826 GTTCTTTGTT
21067836 ATAAAAAAACAAAA-A
1 ATAAAAAAACAAAAGA
21067851 ATAAAAAAACCAAAAGA
1 ATAAAAAAA-CAAAAGA
*
21067868 A-ATAAAAACAAAAGA
1 ATAAAAAAACAAAAGA
* *
21067883 TATGAAAAAAGAAAA
1 -ATAAAAAAACAAAA
21067898 AAAATCTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 16 0.41
16 12 0.31
17 11 0.28
ACGTcount: A:0.79, C:0.06, G:0.06, T:0.08
Consensus pattern (16 bp):
ATAAAAAAACAAAAGA
Found at i:21068128 original size:35 final size:36
Alignment explanation
Indices: 21068057--21068142 Score: 111
Period size: 35 Copynumber: 2.4 Consensus size: 36
21068047 CATGCACCTT
*
21068057 ATCTCATGCATATCATAATAGGATAATACATATATTCC
1 ATCTCATGCACATC--AATAGGATAATACATATATTCC
* * *
21068095 ATCTCATTCACATCAATA-GATAATACATTTATTCT
1 ATCTCATGCACATCAATAGGATAATACATATATTCC
21068130 ATCTCATGCACAT
1 ATCTCATGCACAT
21068143 GTTAATAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
35 27 0.63
36 4 0.09
38 12 0.28
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (36 bp):
ATCTCATGCACATCAATAGGATAATACATATATTCC
Found at i:21069187 original size:23 final size:23
Alignment explanation
Indices: 21069157--21069206 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
21069147 ATACTTGCAC
21069157 TCAAACTCTCTTCATGACTGTTT
1 TCAAACTCTCTTCATGACTGTTT
21069180 TCAAACTCTCTTCATGACTGTTT
1 TCAAACTCTCTTCATGACTGTTT
21069203 TCAA
1 TCAA
21069207 CCTTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (23 bp):
TCAAACTCTCTTCATGACTGTTT
Found at i:21073172 original size:40 final size:40
Alignment explanation
Indices: 21073124--21073354 Score: 164
Period size: 40 Copynumber: 5.7 Consensus size: 40
21073114 ATTTTAGGGT
* *
21073124 AAAATCTTAAATTTTTGAAAGAATTCCAAGACCTTTAGGC
1 AAAATCTTAAATTTTTAAAAGATTTCCAAGACCTTTAGGC
* * * ** *
21073164 AAAATCTTAAATTTTTGAATGACTTT-CAAG-GCTTCCGAC
1 AAAATCTTAAATTTTTAAAAGA-TTTCCAAGACCTTTAGGC
* * ** * * *
21073203 GAAAACCTTAGATTTTTAACTGAATTCTAAGACTTTTAGGC
1 -AAAATCTTAAATTTTTAAAAGATTTCCAAGACCTTTAGGC
* * * * *
21073244 AATAT-TCTAAATTTTCAAAAGATTTCCAAAGACCTTAAAGA
1 AAAATCT-TAAATTTTTAAAAGATTTCC-AAGACCTTTAGGC
* * * *
21073285 AAAAT-TCTAAATTTTAAAAAGATTTTCAAATACCTCTAGGC
1 AAAATCT-TAAATTTTTAAAAGA-TTTCCAAGACCTTTAGGC
21073326 AAAATCTTAAATTTTTAAAAGATTTCCAA
1 AAAATCTTAAATTTTTAAAAGATTTCCAA
21073355 AGTCCTCCAG
Statistics
Matches: 144, Mismatches: 39, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
39 8 0.06
40 69 0.48
41 62 0.43
42 5 0.03
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.35
Consensus pattern (40 bp):
AAAATCTTAAATTTTTAAAAGATTTCCAAGACCTTTAGGC
Found at i:21073276 original size:41 final size:40
Alignment explanation
Indices: 21073231--21073356 Score: 135
Period size: 41 Copynumber: 3.1 Consensus size: 40
21073221 ACTGAATTCT
* *
21073231 AAGACTTTTAGGCAATATTCTAAATTTTCAAAAGATTTCCA
1 AAGACCTTTAGGCAA-ATTCTAAATTTTAAAAAGATTTCCA
* ** *
21073272 AAGACCTTAAAGAAAAATTCTAAATTTTAAAAAGATTTTCA
1 AAGACCTT-TAGGCAAATTCTAAATTTTAAAAAGATTTCCA
* * * *
21073313 AATACCTCTAGGCAAAATCTTAAATTTTTAAAAGATTTCCA
1 AAGACCTTTAGGCAAATTC-TAAATTTTAAAAAGATTTCCA
21073354 AAG
1 AAG
21073357 TCCTCCAGGC
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
40 7 0.10
41 57 0.84
42 4 0.06
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (40 bp):
AAGACCTTTAGGCAAATTCTAAATTTTAAAAAGATTTCCA
Found at i:21073380 original size:22 final size:22
Alignment explanation
Indices: 21073347--21073424 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
21073337 TTTTTAAAAG
21073347 ATTTCCAAAGTCCTCCAGGCATA
1 ATTT-CAAAGTCCTCCAGGCATA
* * *
21073370 ATATCAAAGTCCTCTAAGCATA
1 ATTTCAAAGTCCTCCAGGCATA
* *
21073392 ATTTCAAAGTCCTGCGGGCATA
1 ATTTCAAAGTCCTCCAGGCATA
21073414 ATTTCAAAGTC
1 ATTTCAAAGTC
21073425 TTTTAGGATC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 44 0.94
23 3 0.06
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (22 bp):
ATTTCAAAGTCCTCCAGGCATA
Found at i:21073598 original size:44 final size:44
Alignment explanation
Indices: 21073550--21073664 Score: 117
Period size: 44 Copynumber: 2.6 Consensus size: 44
21073540 GAGTACAAAT
*
21073550 TCAAAGTCCCTT-AGGCACAATCTCAAAGTTCATTAGGCACAATC
1 TCAAAGT-CCTTAAGGCACAATCTCAAAGTTCATTAGCCACAATC
* * * ** * *
21073594 TCAAAGTCTTTAAGGTACAATCCCAAAGTTTTTTTGCCACAATT
1 TCAAAGTCCTTAAGGCACAATCTCAAAGTTCATTAGCCACAATC
*
21073638 TCAAAGTCCTTCAA-GCACAATTTCAAA
1 TCAAAGTCCTT-AAGGCACAATCTCAAA
21073665 ATCCTCCAAG
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
43 3 0.05
44 52 0.91
45 2 0.04
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (44 bp):
TCAAAGTCCTTAAGGCACAATCTCAAAGTTCATTAGCCACAATC
Found at i:21073656 original size:22 final size:22
Alignment explanation
Indices: 21073347--21073674 Score: 89
Period size: 22 Copynumber: 14.8 Consensus size: 22
21073337 TTTTTAAAAG
* * *
21073347 ATTTCCAAAGTCCTCCAGGCATA
1 ATTT-CAAAGTCCTTCAAGCACA
* *
21073370 ATATCAAAGTCC-TCTAAGCATA
1 ATTTCAAAGTCCTTC-AAGCACA
* ** *
21073392 ATTTCAAAGTCCTGCGGGCATA
1 ATTTCAAAGTCCTTCAAGCACA
* * * *
21073414 ATTTCAAAGTCTTTTAGGATCATA
1 ATTTCAAAGTCCTTCA--AGCACA
* *
21073438 ATTTGAAAGTCCTTCGAA-CATA
1 ATTTCAAAGTCCTTC-AAGCACA
* *
21073460 ACCTT-AAAGGCCTTCGAA--ACA
1 A-TTTCAAAGTCCTTC-AAGCACA
* **
21073481 ATTTCAAAGTCCTCCGGGCACA
1 ATTTCAAAGTCCTTCAAGCACA
* ** *
21073503 ACTTCAAAGTATTTCAGGCACA
1 ATTTCAAAGTCCTTCAAGCACA
* * * * *
21073525 GTTCCAAAGTCTTTCGAGTACA
1 ATTTCAAAGTCCTTCAAGCACA
* *
21073547 AATTCAAAGTCCCTT-AGGCACA
1 ATTTCAAAGT-CCTTCAAGCACA
* * *
21073569 ATCTCAAAGTTCATT-AGGCACA
1 ATTTCAAAG-TCCTTCAAGCACA
* * *
21073591 ATCTCAAAGT-CTTTAAGGTACA
1 ATTTCAAAGTCCTTCAA-GCACA
** * ***
21073613 ATCCCAAAGT-TTTTTTGCCACA
1 ATTTCAAAGTCCTTCAAG-CACA
21073635 ATTTCAAAGTCCTTCAAGCACA
1 ATTTCAAAGTCCTTCAAGCACA
* *
21073657 ATTTCAAAATCCTCCAAG
1 ATTTCAAAGTCCTTCAAG
21073675 TATAATCCCT
Statistics
Matches: 228, Mismatches: 62, Indels: 31
0.71 0.19 0.10
Matches are distributed among these distances:
20 4 0.02
21 15 0.07
22 178 0.78
23 14 0.06
24 16 0.07
25 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (22 bp):
ATTTCAAAGTCCTTCAAGCACA
Found at i:21074176 original size:20 final size:21
Alignment explanation
Indices: 21074110--21074175 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
21074100 GCCCCAAAAT
* *
21074110 AAACTCTAGTCAAAATTGATC
1 AAACTATAGTCAAAATTAATC
* *
21074131 AAA-TAAAGTCAAAATTAGTC
1 AAACTATAGTCAAAATTAATC
*
21074151 AAACT-TAGTCAGAATTAATC
1 AAACTATAGTCAAAATTAATC
21074171 AAACT
1 AAACT
21074176 TGATAAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 33 0.89
21 4 0.11
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.27
Consensus pattern (21 bp):
AAACTATAGTCAAAATTAATC
Found at i:21074556 original size:18 final size:18
Alignment explanation
Indices: 21074522--21074555 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21074512 CTTTAGATCT
*
21074522 TAATTTTATAATATTTTA
1 TAATTTTAAAATATTTTA
21074540 TAATTTTAAAA-ATTTT
1 TAATTTTAAAATATTTT
21074556 TGAAAACCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TAATTTTAAAATATTTTA
Found at i:21077808 original size:152 final size:152
Alignment explanation
Indices: 21077631--21078085 Score: 819
Period size: 152 Copynumber: 3.0 Consensus size: 152
21077621 ACATATCTTT
21077631 TAGGTTGA-CTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
1 TAGGTTGAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
*
21077695 TCTAGCTAATGAAAATGACATAGTCCAATCTTTTTTGGAATATAAAGTTATAGTGGTAGTAAACT
66 TCTAGCCAATGAAAATGACATAGTCCAATCTTTTTTGGAATATAAAGTTATAGTGGTAGTAAACT
21077760 TGAGCTCTTATATATTCATCAA
131 TGAGCTCTTATATATTCATCAA
*
21077782 TAGGTTTAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
1 TAGGTTGAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
21077847 TCTAGCCAATGAAAATGACATAGTCCAATC-TTTTTGGAAATATAAAGTTATAGTGGTAGTAAAC
66 TCTAGCCAATGAAAATGACATAGTCCAATCTTTTTTGG-AATATAAAGTTATAGTGGTAGTAAAC
21077911 TTGAGCTCTTATATATTCATCAA
130 TTGAGCTCTTATATATTCATCAA
21077934 TAGGTTGAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
1 TAGGTTGAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
* * *
21077999 TCTAGCCCATGAAAATGACATAGTTCAATCTTTTTTGGAATATAAAATTATAGTGGTAGT-AA-T
66 TCTAGCCAATGAAAATGACATAGTCCAATCTTTTTTGGAATATAAAGTTATAGTGGTAGTAAACT
21078062 ATGAGCTCTTATATATTCATCAA
131 -TGAGCTCTTATATATTCATCAA
21078085 T
1 T
21078086 CAATGAAACA
Statistics
Matches: 294, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
150 1 0.00
151 39 0.13
152 247 0.84
153 7 0.02
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (152 bp):
TAGGTTGAGCTATTAATTACTATTATGTAATTTATTTTGAATAATAGATATCTTATAATTTTTAA
TCTAGCCAATGAAAATGACATAGTCCAATCTTTTTTGGAATATAAAGTTATAGTGGTAGTAAACT
TGAGCTCTTATATATTCATCAA
Found at i:21084992 original size:17 final size:17
Alignment explanation
Indices: 21084965--21084999 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21084955 AATAAGTTTA
21084965 ATTTTTAAAAATTCAAAT
1 ATTTTTAAAAATT-AAAT
21084983 ATTTTT-AAAATTAAAT
1 ATTTTTAAAAATTAAAT
21084999 A
1 A
21085000 ATTAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTTTTAAAAATTAAAT
Found at i:21088943 original size:25 final size:25
Alignment explanation
Indices: 21088915--21088963 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
21088905 AAACAAAAGC
21088915 GATTATGAATTATACAA-TATAGATG
1 GATTATGAATTATA-AATTATAGATG
21088940 GATTATGAATTATAAATTATAGAT
1 GATTATGAATTATAAATTATAGAT
21088964 ATAGATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (25 bp):
GATTATGAATTATAAATTATAGATG
Found at i:21103887 original size:3 final size:3
Alignment explanation
Indices: 21103879--21103914 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
21103869 TCCAACTCCC
21103879 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
21103915 GCTATCCTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:21103933 original size:9 final size:8
Alignment explanation
Indices: 21103878--21103934 Score: 53
Period size: 9 Copynumber: 6.6 Consensus size: 8
21103868 TTCCAACTCC
21103878 CTCTTCTT
1 CTCTTCTT
21103886 CTTCTTCTT
1 C-TCTTCTT
21103895 CTTCTTCTT
1 C-TCTTCTT
21103904 CTTCTTCTT
1 C-TCTTCTT
*
21103913 CTGCTATCCT
1 CT-CT-TCTT
21103923 CTCTTC-T
1 CTCTTCTT
21103930 CTCTT
1 CTCTT
21103935 TCGTTTCCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
7 6 0.13
8 4 0.09
9 30 0.67
10 5 0.11
ACGTcount: A:0.02, C:0.37, G:0.02, T:0.60
Consensus pattern (8 bp):
CTCTTCTT
Found at i:21105900 original size:48 final size:47
Alignment explanation
Indices: 21105820--21105915 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 47
21105810 TTGTATGATG
* * *
21105820 AAAATATCTTGGTAGTATCAGATGATACTCAATTACATACTTGCTTC
1 AAAATATCATGGTAGTATCAAATGAGACTCAATTACATACTTGCTTC
*
21105867 AAAACTATCATGGTAGTATCAAATGAGACTCAATTTCATACTTGCTTC
1 AAAA-TATCATGGTAGTATCAAATGAGACTCAATTACATACTTGCTTC
21105915 A
1 A
21105916 GGAATCTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 4 0.09
48 40 0.91
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (47 bp):
AAAATATCATGGTAGTATCAAATGAGACTCAATTACATACTTGCTTC
Found at i:21107201 original size:22 final size:22
Alignment explanation
Indices: 21107173--21107216 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21107163 CTAAATCTTC
*
21107173 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21107195 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21107217 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:21110684 original size:18 final size:18
Alignment explanation
Indices: 21110658--21110692 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21110648 TAATCCATGA
*
21110658 GAACCAGAAGCTTTACCT
1 GAACCAGAAACTTTACCT
*
21110676 GAACTAGAAACTTTACC
1 GAACCAGAAACTTTACC
21110693 CAAAGAACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (18 bp):
GAACCAGAAACTTTACCT
Found at i:21110922 original size:23 final size:23
Alignment explanation
Indices: 21110867--21110931 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 23
21110857 AAAGGGTTCG
* * *
21110867 GCAATGAAGGCCTAAACAGGATTCG
1 GCAATGAAGGCCTAAA-A-AAGTCA
21110892 GCAATGAAGGCCTAAAAAAGTCA
1 GCAATGAAGGCCTAAAAAAGTCA
21110915 GCAATGAAGG-CTAAAAA
1 GCAATGAAGGCCTAAAAA
21110932 TTTTGCTTCC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.19
23 13 0.35
24 1 0.03
25 16 0.43
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.14
Consensus pattern (23 bp):
GCAATGAAGGCCTAAAAAAGTCA
Found at i:21111100 original size:22 final size:22
Alignment explanation
Indices: 21111072--21111115 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21111062 CTAAATCTTC
*
21111072 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21111094 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21111116 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:21111245 original size:2 final size:2
Alignment explanation
Indices: 21111233--21111274 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
21111223 ATCAATTAAG
* * *
21111233 AT AT AT CT AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21111275 TGAAAGGAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:21116811 original size:16 final size:17
Alignment explanation
Indices: 21116782--21116814 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
21116772 AAAAAATTGA
21116782 TAATATTTTCAAAAAAT
1 TAATATTTTCAAAAAAT
*
21116799 TAAT-TTTTTAAAAAAT
1 TAATATTTTCAAAAAAT
21116815 AAAAAACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATTTTCAAAAAAT
Found at i:21120768 original size:2 final size:2
Alignment explanation
Indices: 21120761--21120788 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21120751 GGTAATTATT
21120761 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21120789 AAACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21123055 original size:18 final size:19
Alignment explanation
Indices: 21123032--21123077 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
21123022 AAAATTTTTT
21123032 TAATTTATTAATATA-ATA
1 TAATTTATTAATATACATA
21123050 TAATTTA-TAATATACATA
1 TAATTTATTAATATACATA
*
21123068 AAACTTTATT
1 TAA-TTTATT
21123078 TCAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 12 0.50
19 4 0.17
20 1 0.04
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATTTATTAATATACATA
Found at i:21124003 original size:33 final size:34
Alignment explanation
Indices: 21123947--21124018 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
21123937 CGGCTTTTAT
* *
21123947 TTTTCTAAAATCGAAAAAAATATATAATTGACAA
1 TTTTATAAAATCGAAAAAAATATATAATTGAAAA
*
21123981 TTTTATAAAATCG-AAAAAATATATAATTTAAAA
1 TTTTATAAAATCGAAAAAAATATATAATTGAAAA
21124014 TTTTA
1 TTTTA
21124019 AATAAACTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 23 0.66
34 12 0.34
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (34 bp):
TTTTATAAAATCGAAAAAAATATATAATTGAAAA
Found at i:21129598 original size:19 final size:19
Alignment explanation
Indices: 21129561--21129598 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21129551 CAACAAACAT
*
21129561 ATTTTATTATATATTTTAA
1 ATTTTATTATATATATTAA
21129580 ATTTTAATTA-ATATATTAA
1 ATTTT-ATTATATATATTAA
21129599 TTTAGTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTATTATATATATTAA
Found at i:21130243 original size:76 final size:75
Alignment explanation
Indices: 21130137--21130281 Score: 191
Period size: 76 Copynumber: 1.9 Consensus size: 75
21130127 ATTATACTAG
* * * * ** *
21130137 TATAAGAGTTACATTTTTTTGGACTTTTTGATCTGATTTAAATCTATAAAACTTATGCTTAGCCA
1 TATAAGAGTTACATCTTTTTGGACTCTTTGATCTAAATTAAATCTATAAAACTTACACTTAGACA
21130202 TTTATGTCAA
66 TTTATGTCAA
* * *
21130212 TATAAGAGTTATATACTTTTTGGACTCTTTGATCTAAATTAAATTTATAACACTTACACTTAGAC
1 TATAAGAGTTACAT-CTTTTTGGACTCTTTGATCTAAATTAAATCTATAAAACTTACACTTAGAC
21130277 ATTTA
65 ATTTA
21130282 GATTCAAAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
75 13 0.22
76 46 0.78
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (75 bp):
TATAAGAGTTACATCTTTTTGGACTCTTTGATCTAAATTAAATCTATAAAACTTACACTTAGACA
TTTATGTCAA
Found at i:21130524 original size:2 final size:2
Alignment explanation
Indices: 21130507--21130543 Score: 56
Period size: 2 Copynumber: 17.5 Consensus size: 2
21130497 ATCCATCATC
21130507 AT AT CAT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A
21130544 ATAAGATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 29 0.88
3 4 0.12
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:21132032 original size:3 final size:3
Alignment explanation
Indices: 21132024--21132059 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
21132014 TTGATTAAGG
* *
21132024 TAA TAA TAA TAA TAA TAA TAA AAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
21132060 AGTTTAGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:21132236 original size:8 final size:8
Alignment explanation
Indices: 21132223--21132247 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
21132213 CACAAACTAA
21132223 TATATATG
1 TATATATG
21132231 TATATATG
1 TATATATG
21132239 TATATATG
1 TATATATG
21132247 T
1 T
21132248 TTAGCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (8 bp):
TATATATG
Found at i:21140820 original size:26 final size:27
Alignment explanation
Indices: 21140746--21140826 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
21140736 TTTATCTAAT
* *
21140746 AAAAAG-AATAAATACAAAAAAATTAAA
1 AAAAAGTAAAAAATAC-AAAAAATGAAA
***
21140773 AAAAAGTAAAAAATAGGGAAAATGAAA
1 AAAAAGTAAAAAATACAAAAAATGAAA
* *
21140800 ACAAAG-GAAAAATACAAAAAATGAAA
1 AAAAAGTAAAAAATACAAAAAATGAAA
21140826 A
1 A
21140827 GTAAACTCAT
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 17 0.40
27 19 0.44
28 7 0.16
ACGTcount: A:0.74, C:0.04, G:0.11, T:0.11
Consensus pattern (27 bp):
AAAAAGTAAAAAATACAAAAAATGAAA
Found at i:21141039 original size:26 final size:26
Alignment explanation
Indices: 21140993--21141049 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21140983 TACCTTTGAC
* * *
21140993 TAATTATGGTAAAAGATATATTTTAG
1 TAATTATGGTAAAAGAGATATTATAA
* *
21141019 TAATTATGTTAAAAGGGATATTATAA
1 TAATTATGGTAAAAGAGATATTATAA
21141045 TAATT
1 TAATT
21141050 TTTAGTTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (26 bp):
TAATTATGGTAAAAGAGATATTATAA
Found at i:21141673 original size:385 final size:385
Alignment explanation
Indices: 21140916--21141651 Score: 824
Period size: 385 Copynumber: 1.9 Consensus size: 385
21140906 AGGCGATGCA
** * *
21140916 TTATAGTAATTTTGGTGAATGATGATAAAATGACATTTTTATAATTATGGTTGCATGAGCATTAT
1 TTATAGTAATTTTGGCAAATGATGATAAAATGACATTTCTATAATTATGGTTGCAGGAGCATTAT
* * * * * *
21140981 AATACCTTTGACTAATTATGGTAAAAGATATATTTTAGTAATTATGTTAAAAGGGATATTATAAT
66 AATAACTTTGACCAATTATGCTAAAAGAGATATTTTAGTAAATATGTTAAAAGGGACATTATAAT
* * ** ** * *
21141046 AATTTTTAGTTATTTATAGAATGAGGGGCATTATAGTTGATTTGGATATGTGTTATTCAATTATC
131 AATTTTTAGTTAATTATAAAAAAAGGGGCATTATAGTAAATTTGGATATGTGTAATTCAAATATC
* * * *
21141111 AAGCAATTAAAAGAGCATTATGATCATTTTCAAAGGGATCATTTTCATGTAATTGTATGGATGTT
196 AAGCAATTAAAAGAGCATTATGATCATTTTCAAAGGGATCAATTTCATATAATTATATGAATGTT
* **
21141176 AAAATGGAATACATAATTATGAAGCAAAAAAAAAGTGCATTTTCATAATTATGGTAGAAAGATAT
261 AAAATGGAATACATAATTATGAAACAAAAAAAAAGTGCATTTTCATAATTATACTAGAAAGATAT
* * *
21141241 TATAGTAATTTTTAAAATTATCATATAAAGGGTATTTTAGTAATTATGAAAATAGTAATG
326 TATAGTAATTTTGAAAATTATAATATAAAGGGTATTTCAGTAATTATGAAAATAGTAATG
* *
21141301 TTATAGTAATTTTGGCAAATGATGGTAGAAA-GACATTTCTATAATTATGGTTGCAGGGGCAATT
1 TTATAGTAATTTTGGCAAATGATGATA-AAATGACATTTCTATAATTATGGTTGCAGGAGC-ATT
* * * * * * *
21141365 ATATTAATTTTGGCCAATTATGCTAAGAGAGGTCTTTTAGTAAATATGTTAAGATGGG-CATTAT
64 ATAATAACTTTGACCAATTATGCTAAAAGAGATATTTTAGTAAATATGTTAA-AAGGGACATTAT
*
21141429 AATAA-TTTTAGTTAATTATAAAAAAATGGGCATTATAGTAAATTT-GA-ATGCATGTAATTCAA
128 AATAATTTTTAGTTAATTATAAAAAAAGGGGCATTATAGTAAATTTGGATATG--TGTAATTCAA
* * * * * * *
21141491 ATGTTAAGTAATTAAAA-AGACATTATGATTA-TTTCTAAGGGATTAATTTCATATTATTATATG
191 ATATCAAGCAATTAAAAGAG-CATTATGATCATTTTCAAAGGGATCAATTTCATATAATTATATG
* ** * * ** * * *
21141554 AATGTTAAATTTTAATGCGTAATTATGAAAC-AATTAAAAG-GATATTTTCGTAATTATACTTGA
255 AATGTTAAAATGGAATACATAATTATGAAACAAAAAAAAAGTG-CATTTTCATAATTATACTAG-
*
21141617 AAAGATATTATAGTAATTTTGATCAATTATAATAT
318 AAAGATATTATAGTAATTTTGA-AAATTATAATAT
21141652 GAGGAGTGTC
Statistics
Matches: 287, Mismatches: 55, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
382 1 0.00
383 25 0.09
384 75 0.26
385 125 0.44
386 57 0.20
387 4 0.01
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (385 bp):
TTATAGTAATTTTGGCAAATGATGATAAAATGACATTTCTATAATTATGGTTGCAGGAGCATTAT
AATAACTTTGACCAATTATGCTAAAAGAGATATTTTAGTAAATATGTTAAAAGGGACATTATAAT
AATTTTTAGTTAATTATAAAAAAAGGGGCATTATAGTAAATTTGGATATGTGTAATTCAAATATC
AAGCAATTAAAAGAGCATTATGATCATTTTCAAAGGGATCAATTTCATATAATTATATGAATGTT
AAAATGGAATACATAATTATGAAACAAAAAAAAAGTGCATTTTCATAATTATACTAGAAAGATAT
TATAGTAATTTTGAAAATTATAATATAAAGGGTATTTCAGTAATTATGAAAATAGTAATG
Found at i:21142934 original size:9 final size:9
Alignment explanation
Indices: 21142922--21142976 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
21142912 TTTTTTAAAG
*
21142922 AAAAAAGTA
1 AAAAAAGAA
21142931 AAAAAAGAA
1 AAAAAAGAA
*
21142940 AAAAAAGCA
1 AAAAAAGAA
*
21142949 AAAAAAG-G
1 AAAAAAGAA
**
21142957 GCAAAA-AA
1 AAAAAAGAA
21142965 AAAAAAGAA
1 AAAAAAGAA
21142974 AAA
1 AAA
21142977 TTGGTATATG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
8 8 0.22
9 28 0.78
ACGTcount: A:0.82, C:0.04, G:0.13, T:0.02
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:21154333 original size:23 final size:27
Alignment explanation
Indices: 21154304--21154358 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 27
21154294 GATTAAAATT
21154304 AATTTAA-TAA-TTAAT-AATTAA-TC
1 AATTTAATTAATTTAATAAATTAACTC
21154327 AATTTAATTTAATTTAATAAATTAACTC
1 AATTTAA-TTAATTTAATAAATTAACTC
21154355 AATT
1 AATT
21154359 AAAATCGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.26
25 3 0.11
26 5 0.19
27 6 0.22
28 6 0.22
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.45
Consensus pattern (27 bp):
AATTTAATTAATTTAATAAATTAACTC
Found at i:21154333 original size:28 final size:28
Alignment explanation
Indices: 21154302--21154358 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
21154292 CAGATTAAAA
21154302 TTAATTTAATAATTAAT-AATTAA-TCAAT
1 TTAATTTAAT--TTAATAAATTAACTCAAT
21154330 TTAATTTAATTTAATAAATTAACTCAAT
1 TTAATTTAATTTAATAAATTAACTCAAT
21154358 T
1 T
21154359 AAAATCGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 6 0.22
28 16 0.59
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (28 bp):
TTAATTTAATTTAATAAATTAACTCAAT
Found at i:21158807 original size:25 final size:25
Alignment explanation
Indices: 21158770--21158820 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
21158760 TTATTTTAAA
21158770 ATTAAATACGAGTAAAGCATATGAT
1 ATTAAATACGAGTAAAGCATATGAT
* * *
21158795 ATTAGATATGAGTAAAGTATATGAT
1 ATTAAATACGAGTAAAGCATATGAT
21158820 A
1 A
21158821 GGGTAGAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (25 bp):
ATTAAATACGAGTAAAGCATATGAT
Found at i:21161663 original size:63 final size:62
Alignment explanation
Indices: 21161581--21161708 Score: 238
Period size: 63 Copynumber: 2.0 Consensus size: 62
21161571 ATTTTTAAAA
21161581 AAATATAAATTTAAACAATTAAGAAGAAATATACAAAAGTACTATTTGATGTAAATATAAACC
1 AAATATAAATTTAAACAATTAAGAAGAAATATAC-AAAGTACTATTTGATGTAAATATAAACC
*
21161644 AAATCTAAATTTAAACAATTAAGAAGAAATATACAAAGTACTATTTGATGTAAATATAAACC
1 AAATATAAATTTAAACAATTAAGAAGAAATATACAAAGTACTATTTGATGTAAATATAAACC
21161706 AAA
1 AAA
21161709 AGTGTTGTAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 31 0.48
63 33 0.52
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (62 bp):
AAATATAAATTTAAACAATTAAGAAGAAATATACAAAGTACTATTTGATGTAAATATAAACC
Found at i:21161890 original size:3 final size:3
Alignment explanation
Indices: 21161882--21161916 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
21161872 CATAAACGTG
21161882 TAA TAA TAA TAA TAA -AA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
21161917 ACGTAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:21166448 original size:59 final size:58
Alignment explanation
Indices: 21166380--21166626 Score: 300
Period size: 60 Copynumber: 4.2 Consensus size: 58
21166370 TGCTTTTGTA
*
21166380 CAAGAAAAATTCATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGATAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGA-AATTTTATTT
* * *
21166439 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAACACT-TTTTTTTTTAAATTCTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAA-A-TATTTTTTTTGAAATT-TTATTT
* * *
21166499 CAAGAAAAATTGATATTTTCAATTTTTCTTCAAAAA-ACCTTTTTTTTGAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTTTGAAATTTT-ATTT
* * *
21166559 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTCTTAATAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGA-AATTTTATTT
* *
21166618 TAAGGAAAA
1 CAAGAAAAA
21166627 CTAGTACTTC
Statistics
Matches: 161, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
59 58 0.36
60 101 0.63
61 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.46
Consensus pattern (58 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTT
Found at i:21166531 original size:30 final size:30
Alignment explanation
Indices: 21166497--21166586 Score: 71
Period size: 30 Copynumber: 3.0 Consensus size: 30
21166487 AAATTCTAAT
21166497 TTCAAGAAAAATTGATATTTTCAATTTTTC
1 TTCAAGAAAAATTGATATTTTCAATTTTTC
* * *
21166527 TTCAA-AAAACCTT--TTTTTTGAAATTTTAAT-
1 TTCAAGAAAA-ATTGATATTTT-CAATTTT--TC
* *
21166557 TTCAAGAAAAATTGATACTTTCAACTTTTC
1 TTCAAGAAAAATTGATATTTTCAATTTTTC
21166587 CTTAAAAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
28 5 0.11
29 11 0.25
30 14 0.32
31 10 0.23
32 4 0.09
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (30 bp):
TTCAAGAAAAATTGATATTTTCAATTTTTC
Found at i:21166614 original size:60 final size:59
Alignment explanation
Indices: 21166380--21166601 Score: 306
Period size: 60 Copynumber: 3.7 Consensus size: 59
21166370 TGCTTTTGTA
*
21166380 CAAGAAAAATTCATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGATAATTTT-ATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGA-AATTTTAATTT
* * *
21166439 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAACACT-TTTTTTTTTAAATTCTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAA-A-TATTTTTTTTGAAATTTTAATTT
* * *
21166499 CAAGAAAAATTGATATTTTCAATTTTTCTTCAAAAA-ACCTTTTTTTTGAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTTTGAAATTTTAATTT
*
21166559 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT
21166602 CTTAATAATT
Statistics
Matches: 142, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
59 44 0.31
60 96 0.68
61 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.46
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTAATTT
Found at i:21166626 original size:60 final size:58
Alignment explanation
Indices: 21166380--21166659 Score: 284
Period size: 60 Copynumber: 4.7 Consensus size: 58
21166370 TGCTTTTGTA
* *
21166380 CAAGAAAAATTCATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGATAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGA-AATTTTATTT
* * * *
21166439 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAACACT-TTTTTTTTTAAATTCTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAA-A-TATTTTTTTTGAAATT-TTATTT
* *
21166499 CAAGAAAAATTGATATTTTCAA-TTTTTCTTCAAAAA-ACCTTTTTTTTGAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAAATA--TTTTTTTTGAAATTTT-ATTT
* *
21166559 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTCTTAATAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGA-AATTTTATTT
* * * * *
21166618 TAAGGAAAACT-AGTACTTCCAA-TTTGT-CTTAAAAATGTTTTT
1 CAAGAAAAATTGA-TACTTTCAACTTT-TCCTTAAAAATATTTTT
21166660 ATTTTTATAT
Statistics
Matches: 189, Mismatches: 19, Indels: 27
0.80 0.08 0.11
Matches are distributed among these distances:
58 18 0.10
59 74 0.39
60 88 0.47
61 9 0.05
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.46
Consensus pattern (58 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAATTTTATTT
Found at i:21166665 original size:120 final size:120
Alignment explanation
Indices: 21166380--21166652 Score: 294
Period size: 119 Copynumber: 2.3 Consensus size: 120
21166370 TGCTTTTGTA
** * * *
21166380 CAAGAAAAATTCATACTTTCAACTTT-TCCTCAAAAATA--TTTTTTTTGATAATTTTATTTTAA
1 CAAGAAAAATAGATACTTCCAA-TTTGTCTTCAAAAA-ACCTTTTTTTTGATAATTTTATTTCAA
* *
21166442 GAAAAATTGATACTTTCAACTTTTCCTCAAAACACTTTTTTTTTTAAATTCTAATTT
64 GAAAAATTGATACTTTCAACTTTTCCTCAAAACACTTTTTTCTTAAAATTCTAATTT
* * * *
21166499 CAAGAAAAATTGATATTTTCAATTTTTCTTCAAAAAACCTTTTTTTTGA-AATTTTAATTTCAAG
1 CAAGAAAAATAGATACTTCCAATTTGTCTTCAAAAAACCTTTTTTTTGATAATTTT-ATTTCAAG
* *
21166563 AAAAATTGATACTTTCAACTTTTCCTTAAAA-A-TATTTTTCTTAATAATT-TTATTT
65 AAAAATTGATACTTTCAACTTTTCCTCAAAACACT-TTTTTCTTAA-AATTCTAATTT
* *
21166618 TAAGGAAAACTAG-TACTTCCAATTTGTCTT-AAAAA
1 CAA-GAAAAATAGATACTTCCAATTTGTCTTCAAAAA
21166653 TGTTTTTATT
Statistics
Matches: 133, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
118 10 0.08
119 65 0.49
120 58 0.44
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45
Consensus pattern (120 bp):
CAAGAAAAATAGATACTTCCAATTTGTCTTCAAAAAACCTTTTTTTTGATAATTTTATTTCAAGA
AAAATTGATACTTTCAACTTTTCCTCAAAACACTTTTTTCTTAAAATTCTAATTT
Found at i:21166751 original size:35 final size:37
Alignment explanation
Indices: 21166700--21166779 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
21166690 AAATACTCTT
21166700 AAAAAAATAAACAAACACAT-AAAT-AAAAAATACCA
1 AAAAAAATAAACAAACACATAAAATAAAAAAATACCA
*
21166735 AAAAAAATAAATAAACACATAAAAAATAAAAAAATACCA
1 AAAAAAATAAACAAACACAT--AAAATAAAAAAATACCA
21166774 AAAAAA
1 AAAAAA
21166780 TACAAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.47
38 4 0.10
39 17 0.43
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (37 bp):
AAAAAAATAAACAAACACATAAAATAAAAAAATACCA
Found at i:21166780 original size:19 final size:19
Alignment explanation
Indices: 21166720--21166788 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
21166710 ACAAACACAT
21166720 AAAT-AAAAAATACCAAAAA
1 AAATAAAAAAATACC-AAAA
* *
21166739 AAATAAATAAACA-CATAAA
1 AAATAAAAAAATACCA-AAA
21166758 AAATAAAAAAATACCAAAA
1 AAATAAAAAAATACCAAAA
21166777 AAATACAAAAAA
1 AAATA-AAAAAA
21166789 ATTGAAAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
18 1 0.02
19 27 0.64
20 14 0.33
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (19 bp):
AAATAAAAAAATACCAAAA
Found at i:21166796 original size:10 final size:10
Alignment explanation
Indices: 21166724--21166790 Score: 59
Period size: 11 Copynumber: 6.7 Consensus size: 10
21166714 ACACATAAAT
21166724 AAAAAATACCA
1 AAAAAATA-CA
*
21166735 AAAAAA-ATA
1 AAAAAATACA
* *
21166744 AATAAACACA
1 AAAAAATACA
21166754 TAAAAAAT--A
1 -AAAAAATACA
21166763 AAAAAATACCA
1 AAAAAATA-CA
21166774 AAAAAATACA
1 AAAAAATACA
21166784 AAAAAAT
1 AAAAAAT
21166791 TGAAAATGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
8 7 0.15
9 7 0.15
10 12 0.26
11 20 0.43
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (10 bp):
AAAAAATACA
Found at i:21167760 original size:56 final size:56
Alignment explanation
Indices: 21167664--21167813 Score: 243
Period size: 54 Copynumber: 2.7 Consensus size: 56
21167654 TGCTGACACT
21167664 ACCCTTAAGCAGATGTTCACAACCTCTTTCTTTTTTTTTTTTTTAACACTTGAAAC
1 ACCCTTAAGCAGATGTTCACAACCTCTTTCTTTTTTTTTTTTTTAACACTTGAAAC
* *
21167720 ACCCATAAGTAGATGTTCACAACCTCTTTC--TTTTTTTTTTTTAACACTTGAAAC
1 ACCCTTAAGCAGATGTTCACAACCTCTTTCTTTTTTTTTTTTTTAACACTTGAAAC
* *
21167774 ACCCTTAAACAGATGCTCACAACCTCTTT-TTTTTTTTTTT
1 ACCCTTAAGCAGATGTTCACAACCTCTTTCTTTTTTTTTTT
21167814 GAGAGTGAAC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
54 49 0.57
55 9 0.10
56 28 0.33
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (56 bp):
ACCCTTAAGCAGATGTTCACAACCTCTTTCTTTTTTTTTTTTTTAACACTTGAAAC
Found at i:21167869 original size:43 final size:44
Alignment explanation
Indices: 21167821--21168001 Score: 115
Period size: 44 Copynumber: 4.1 Consensus size: 44
21167811 TTTGAGAGTG
* *
21167821 AACAAAACTC-TTCTAAACAG-GGCTCAATGA-TTTTGGAAAAATA
1 AACAAAACTCATT-TAAACAGAGACTCAACGACTTTT-GAAAAATA
* * *
21167864 AACAAAGCTCATTTAAATAGAGACTCAACGACTTTTGAAAAATG
1 AACAAAACTCATTTAAACAGAGACTCAACGACTTTTGAAAAATA
*** * * *
21167908 AACAAGGTTTC-TCTAATCAGAGGCTCAACGAC-TTTGAAAAATAA
1 AACAA-AACTCATTTAAACAGAGACTCAACGACTTTTGAAAAAT-A
** * * *
21167952 AACAAAGTTTC-TTTACACAAAGACTTAACGAC-TTTGAAAAAATA
1 AACAAA-ACTCATTTAAACAGAGACTCAACGACTTTTG-AAAAATA
21167996 AACAAA
1 AACAAA
21168002 GCACCTCTAA
Statistics
Matches: 111, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
43 25 0.23
44 74 0.67
45 12 0.11
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.25
Consensus pattern (44 bp):
AACAAAACTCATTTAAACAGAGACTCAACGACTTTTGAAAAATA
Found at i:21167904 original size:44 final size:43
Alignment explanation
Indices: 21167856--21168002 Score: 145
Period size: 44 Copynumber: 3.3 Consensus size: 43
21167846 AATGATTTTG
21167856 GAAAAATAAACAAAG-CTCATTTAAATAGAGACTCAACGACTTTT
1 GAAAAATAAACAAAGTCTC-TTTAAATAGAGACTCAACGAC-TTT
* * * * *
21167900 GAAAAATGAACAAGGTTTCTCT-AATCAGAGGCTCAACGACTTT
1 GAAAAATAAACAAAGTCTCTTTAAAT-AGAGACTCAACGACTTT
* * * * *
21167943 GAAAAATAAAACAAAGTTTCTTTACACAAAGACTTAACGACTTT
1 GAAAAAT-AAACAAAGTCTCTTTAAATAGAGACTCAACGACTTT
21167987 GAAAAAATAAACAAAG
1 G-AAAAATAAACAAAG
21168003 CACCTCTAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
43 13 0.15
44 63 0.74
45 9 0.11
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.24
Consensus pattern (43 bp):
GAAAAATAAACAAAGTCTCTTTAAATAGAGACTCAACGACTTT
Found at i:21167947 original size:87 final size:87
Alignment explanation
Indices: 21167832--21167992 Score: 202
Period size: 88 Copynumber: 1.9 Consensus size: 87
21167822 ACAAAACTCT
* * * *
21167832 TCTAAACAGGGCTCAATGATTTTGGAAAAAT-AAACAAAG-CTCATTTAAATAGAGACTCAACGA
1 TCTAAACAGGGCTCAACGACTTTGGAAAAATAAAACAAAGTCTC-TTTAAACAAAGACTCAACGA
21167895 CTTTTGAAAAATGAACAAGGTTTC
65 C-TTTGAAAAATGAACAAGGTTTC
* * * *
21167919 TCTAATCAGAGGCTCAACGACTTT-GAAAAATAAAACAAAGTTTCTTTACACAAAGACTTAACGA
1 TCTAAACAG-GGCTCAACGACTTTGGAAAAATAAAACAAAGTCTCTTTAAACAAAGACTCAACGA
21167983 CTTTGAAAAA
65 CTTTGAAAAA
21167993 ATAAACAAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
87 24 0.38
88 37 0.59
89 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.26
Consensus pattern (87 bp):
TCTAAACAGGGCTCAACGACTTTGGAAAAATAAAACAAAGTCTCTTTAAACAAAGACTCAACGAC
TTTGAAAAATGAACAAGGTTTC
Found at i:21168010 original size:88 final size:88
Alignment explanation
Indices: 21167832--21168016 Score: 198
Period size: 88 Copynumber: 2.1 Consensus size: 88
21167822 ACAAAACTCT
* * * *
21167832 TCTAAACAG-GGCTCAATGATTTTGGAAAAATAAACAAAGCTCATTTAAATAGAGACTCAACGAC
1 TCTAAACAGAGGCTCAACGACTTTGGAAAAATAAACAAAGCTCATTTAAACAAAGACTCAACGAC
* * ***
21167896 TTTTGAAAAATGAACAAGGTTTC
66 TTTTGAAAAATAAACAAAGCACC
* * * *
21167919 TCTAATCAGAGGCTCAACGACTTT-GAAAAATAAAACAAAGTTTC-TTTACACAAAGACTTAACG
1 TCTAAACAGAGGCTCAACGACTTTGGAAAAAT-AAACAAAG-CTCATTTAAACAAAGACTCAACG
21167982 AC-TTTGAAAAAATAAACAAAGCACC
64 ACTTTTG-AAAAATAAACAAAGCACC
21168007 TCTAAACAGA
1 TCTAAACAGA
21168017 CACCACAACT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
87 19 0.24
88 59 0.74
89 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (88 bp):
TCTAAACAGAGGCTCAACGACTTTGGAAAAATAAACAAAGCTCATTTAAACAAAGACTCAACGAC
TTTTGAAAAATAAACAAAGCACC
Found at i:21168146 original size:125 final size:122
Alignment explanation
Indices: 21167982--21168209 Score: 282
Period size: 125 Copynumber: 1.8 Consensus size: 122
21167972 AGACTTAACG
21167982 ACTTTGAAAAAATAAACAAAGCACCTCTAAACAGACACCACAACTTTG-AAAATAAAATAT-TCC
1 ACTTTGAAAAAATAAAC-AAGCACCTCTAAACAGACACCACAACTTTGAAAAAT-AAAT-TCTCC
* *
21168045 TCTAAATAGAGGTAATCACAACTTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCACCACA
63 TCTAAACAGAGG-AACCACAAC-TTTGAAAAATAAAATGCTCCTCTAAATAGAGGCACCACA
* * * * *
21168107 ACTTTTAAAAAATAAAC-TGCTCCTTTAAACAGAGGCACCATAACTTTGAAAAATAAATTCTCCT
1 ACTTTGAAAAAATAAACAAGCACCTCTAAACAGA--CACCACAACTTTGAAAAATAAATTCTCCT
* * *
21168171 TTAAACAGAGGCACCACAACTTTGAAAAATAAATTGCTC
64 CTAAACAGAGGAACCACAACTTTGAAAAATAAAATGCTC
21168210 ATTGACGATC
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
123 31 0.35
124 8 0.09
125 45 0.51
126 5 0.06
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.25
Consensus pattern (122 bp):
ACTTTGAAAAAATAAACAAGCACCTCTAAACAGACACCACAACTTTGAAAAATAAATTCTCCTCT
AAACAGAGGAACCACAACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCACCACA
Found at i:21168181 original size:40 final size:40
Alignment explanation
Indices: 21168005--21168205 Score: 221
Period size: 42 Copynumber: 5.0 Consensus size: 40
21167995 AAACAAAGCA
21168005 CCTCTAAACAGA--CACCACAACTTTG-AAAATAAAATAT-T
1 CCTCTAAACAGAGGCACCACAACTTTGAAAAAT-AAAT-TCT
* * * *
21168043 CCTCTAAATAGAGGTAATCACAACTTTTGAAAAATAAAATGCT
1 CCTCTAAACAGAGG-CACCACAAC-TTTGAAAAAT-AAATTCT
* * *
21168086 CCTCTAAATAGAGGCACCACAACTTTTAAAAAATAAACTGCT
1 CCTCTAAACAGAGGCACCACAAC-TTTGAAAAATAAA-TTCT
* *
21168128 CCTTTAAACAGAGGCACCATAACTTTGAAAAATAAATTCT
1 CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAATTCT
*
21168168 CCTTTAAACAGAGGCACCACAACTTTGAAAAATAAATT
1 CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAATT
21168206 GCTCATTGAC
Statistics
Matches: 143, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
38 11 0.08
40 40 0.28
41 22 0.15
42 45 0.31
43 25 0.17
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.25
Consensus pattern (40 bp):
CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAATTCT
Found at i:21168199 original size:82 final size:84
Alignment explanation
Indices: 21168005--21168209 Score: 242
Period size: 81 Copynumber: 2.5 Consensus size: 84
21167995 AAACAAAGCA
** * *
21168005 CCTCTAAACAGA--CACCACAACTTTG-AAAATAAAATATTCCTCTAAATAGAGGTAATCACAAC
1 CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGTAACCACAAC
21168067 TTTTGAAAAATAAAATGCT
66 TTTTGAAAAATAAAATGCT
* * * * * *
21168086 CCTCTAAATAGAGGCACCACAACTTTTAAAAAATAAACTGCTCCTTTAAACAGAGG-CACCATAA
1 CCTCTAAACAGAGGCACCACAAC-TTTGAAAAATAAAATGCTCCTCTAAACAGAGGTAACCACAA
*
21168150 C-TTTGAAAAAT-AAATTCT
65 CTTTTGAAAAATAAAATGCT
* *
21168168 CCTTTAAACAGAGGCACCACAACTTTGAAAAATAAATTGCTC
1 CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAAATGCTC
21168210 ATTGACGATC
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
81 28 0.27
82 27 0.26
83 19 0.18
84 9 0.09
85 22 0.21
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.25
Consensus pattern (84 bp):
CCTCTAAACAGAGGCACCACAACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGTAACCACAAC
TTTTGAAAAATAAAATGCT
Found at i:21168648 original size:21 final size:22
Alignment explanation
Indices: 21168622--21168669 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
21168612 GTTTCACACC
21168622 TCAAAGATTCTCATTTGA-AAT
1 TCAAAGATTCTCATTTGAGAAT
21168643 TCAAAGATTCTCATTTGAGAAT
1 TCAAAGATTCTCATTTGAGAAT
21168665 TCAAA
1 TCAAA
21168670 AATTTAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (22 bp):
TCAAAGATTCTCATTTGAGAAT
Found at i:21169813 original size:10 final size:10
Alignment explanation
Indices: 21169800--21169832 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
21169790 CATTTTCATC
21169800 TTTTTTTTCTT
1 TTTTTTTTC-T
21169811 TTTTTTTTCT
1 TTTTTTTTCT
21169821 TTTTTTTTCT
1 TTTTTTTTCT
21169831 TT
1 TT
21169833 CACCCATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:21169814 original size:11 final size:11
Alignment explanation
Indices: 21169800--21169832 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
21169790 CATTTTCATC
21169800 TTTTTTTTCTT
1 TTTTTTTTCTT
21169811 TTTTTTTTC-T
1 TTTTTTTTCTT
21169821 TTTTTTTTCTT
1 TTTTTTTTCTT
21169832 T
1 T
21169833 CACCCATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:21175995 original size:15 final size:15
Alignment explanation
Indices: 21175977--21176005 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21175967 TTTTTTTTAT
21175977 AATTTTATTTTAAGA
1 AATTTTATTTTAAGA
21175992 AATTTTATTTTAAG
1 AATTTTATTTTAAG
21176006 GAAAACTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
AATTTTATTTTAAGA
Found at i:21176049 original size:60 final size:58
Alignment explanation
Indices: 21175991--21176176 Score: 216
Period size: 60 Copynumber: 3.2 Consensus size: 58
21175981 TTATTTTAAG
* * * * *
21175991 AAATTTTATTTTAAGGAAAACTGATACTTTTAACTTTTCTTTAAAATACTTTTTTTT-
1 AAATTTTATTTCAAGAAAAATTGATACTTTTAACTTTTCCTCAAAATACTTTTTTTTA
* * *
21176048 -AATTCTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATCTTTTTTTTA
1 AAATT-TTATTTCAAGAAAAATTGATACTTTTAACTTTTCCTCAAAATA-CTTTTTTTTA
* *
21176107 AAATTTTAATTTCGAGAAAAATTGATAATTTTAACTTTTCCTCAAAATA-TATTTTTTTA
1 AAATTTT-ATTTCAAGAAAAATTGATACTTTTAACTTTTCCTCAAAATACT-TTTTTTTA
*
21176166 TAATTTTATTT
1 AAATTTTATTT
21176177 TTTTAAAAAT
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
56 4 0.04
57 35 0.32
58 14 0.13
59 15 0.14
60 41 0.38
ACGTcount: A:0.36, C:0.10, G:0.04, T:0.49
Consensus pattern (58 bp):
AAATTTTATTTCAAGAAAAATTGATACTTTTAACTTTTCCTCAAAATACTTTTTTTTA
Found at i:21176187 original size:58 final size:56
Alignment explanation
Indices: 21175991--21176235 Score: 179
Period size: 57 Copynumber: 4.2 Consensus size: 56
21175981 TTATTTTAAG
** * * * **
21175991 AAATTTTATTTTAAGGAAAACTGATACTTTTAACTTTT-CTTTAAAATACTTTTTTT
1 AAATTTTATTTTTTGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTT
* * *** *
21176047 TAATTCTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATCTTTTTTTT
1 AAATT-TTATTTTTTGAAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-ATTTTTTT
*** * *
21176106 AAAATTTTAATTTCGAGAAAAATTGATAATTTTAACTTTTCCTCAAAATATATTTTTTT
1 -AAATTTT-ATTTTTTGAAAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTT
* * * *
21176165 ATAATTTTATTTTTTTAAAAATT-AGTACTTCCAATTTTTTCTCAAAAATATTTTTTT
1 A-AATTTTATTTTTTGAAAAATTGA-TACTTTCAACTTTTCCTCAAAAATATTTTTTT
* *
21176222 AATTTTTATATTTT
1 AAATTTTATTTTTT
21176236 ATAATTTATA
Statistics
Matches: 154, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
56 15 0.10
57 40 0.26
58 31 0.20
59 30 0.19
60 38 0.25
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.51
Consensus pattern (56 bp):
AAATTTTATTTTTTGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
Found at i:21176329 original size:27 final size:25
Alignment explanation
Indices: 21176289--21176369 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 25
21176279 ACAAACACAT
* *
21176289 AAATGAAAAAAAACCAAAAAAAAAAA
1 AAAT-AAAAAAAACCAAAACATAAAA
21176315 AAATAATAAATAAA-CAAACACATAAAA
1 AAATAA-AAA-AAACCAAA-ACATAAAA
21176342 AAATAAAAAAATACCAAAACATAAAA
1 AAATAAAAAAA-ACCAAAACATAAAA
21176368 AA
1 AA
21176370 TGGCTTAGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
25 4 0.08
26 25 0.52
27 19 0.40
ACGTcount: A:0.79, C:0.10, G:0.01, T:0.10
Consensus pattern (25 bp):
AAATAAAAAAAACCAAAACATAAAA
Found at i:21178764 original size:37 final size:37
Alignment explanation
Indices: 21178723--21178809 Score: 99
Period size: 37 Copynumber: 2.4 Consensus size: 37
21178713 TTGGTGTGGG
*
21178723 AGAGAAGAAGAAA-AAAATGAAAGAAAAACAAAAAAAA
1 AGAGAAAAAGAAAGAAAA-GAAAGAAAAACAAAAAAAA
**
21178760 AGAGAAAAAGAAAGGAAAAGAAAG-AAAAGGAAAAAAA
1 AGAGAAAAAGAAA-GAAAAGAAAGAAAAACAAAAAAAA
*
21178797 AG-GAAAAAAAAAG
1 AGAGAAAAAGAAAG
21178810 GTTTGGTCGA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
35 1 0.02
36 9 0.20
37 25 0.57
38 5 0.11
39 4 0.09
ACGTcount: A:0.77, C:0.01, G:0.21, T:0.01
Consensus pattern (37 bp):
AGAGAAAAAGAAAGAAAAGAAAGAAAAACAAAAAAAA
Found at i:21178790 original size:15 final size:15
Alignment explanation
Indices: 21178764--21178803 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
21178754 AAAAAAAGAG
21178764 AAAAAG-AAAGGAAA
1 AAAAAGAAAAGGAAA
*
21178778 AGAAAGAAAAGGAAA
1 AAAAAGAAAAGGAAA
21178793 AAAAAGGAAAA
1 AAAAA-GAAAA
21178804 AAAAAGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGGAAA
Found at i:21178799 original size:10 final size:10
Alignment explanation
Indices: 21178733--21178807 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
21178723 AGAGAAGAAG
*
21178733 AAAAAAATGA
1 AAAAAAAGGA
**
21178743 AAGAAAAACAA
1 AA-AAAAAGGA
21178754 AAAAAAAGAGA
1 AAAAAAAG-GA
21178765 AAAAGAAAGG-
1 AAAA-AAAGGA
21178775 ---AAAA-GA
1 AAAAAAAGGA
*
21178781 AAGAAAAGGA
1 AAAAAAAGGA
21178791 AAAAAAAGGA
1 AAAAAAAGGA
21178801 AAAAAAA
1 AAAAAAA
21178808 AGGTTTGGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
5 1 0.02
6 3 0.06
7 1 0.02
9 4 0.08
10 25 0.48
11 14 0.27
12 4 0.08
ACGTcount: A:0.80, C:0.01, G:0.17, T:0.01
Consensus pattern (10 bp):
AAAAAAAGGA
Found at i:21178853 original size:16 final size:15
Alignment explanation
Indices: 21178830--21178866 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
21178820 CTTCTGAAAT
21178830 AAAAAAAAAGGGAAG
1 AAAAAAAAAGGGAAG
*
21178845 AAGAAAAAAGGGGAAG
1 AA-AAAAAAAGGGAAG
21178861 AAAAAA
1 AAAAAA
21178867 TTTAATAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGGGAAG
Found at i:21178860 original size:13 final size:14
Alignment explanation
Indices: 21178833--21178866 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
21178823 CTGAAATAAA
21178833 AAAAAAGGGAAGAAG
1 AAAAAAGGG-AGAAG
21178848 AAAAAAGGG-GAAG
1 AAAAAAGGGAGAAG
21178861 AAAAAA
1 AAAAAA
21178867 TTTAATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
15 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (14 bp):
AAAAAAGGGAGAAG
Found at i:21179804 original size:16 final size:14
Alignment explanation
Indices: 21179768--21179830 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 14
21179758 ACATGGCATC
*
21179768 TTTATCTTT-TTTT
1 TTTATTTTTCTTTT
* *
21179781 TTTCTTTTGCTTTT
1 TTTATTTTTCTTTT
21179795 TTGTATTTTTACTTTT
1 TT-TATTTTT-CTTTT
*
21179811 TTTACTTTTTCATTT
1 TTTA-TTTTTCTTTT
21179826 TTTAT
1 TTTAT
21179831 ATTTGTTGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 6 0.15
14 7 0.17
15 15 0.38
16 12 0.30
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.78
Consensus pattern (14 bp):
TTTATTTTTCTTTT
Found at i:21180918 original size:17 final size:18
Alignment explanation
Indices: 21180896--21180929 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21180886 TGATGTTCTA
21180896 CCTTTA-TTTATTTTTTT
1 CCTTTATTTTATTTTTTT
21180913 CCTTTATTTTATTTTTT
1 CCTTTATTTTATTTTTT
21180930 AATATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (18 bp):
CCTTTATTTTATTTTTTT
Found at i:21186641 original size:15 final size:15
Alignment explanation
Indices: 21186623--21186651 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21186613 ATTATTATTA
21186623 TTATTGTTATTGTTG
1 TTATTGTTATTGTTG
21186638 TTATTGTTATTGTT
1 TTATTGTTATTGTT
21186652 TCTTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (15 bp):
TTATTGTTATTGTTG
Found at i:21213547 original size:18 final size:18
Alignment explanation
Indices: 21213524--21213584 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
21213514 ACTTCTCTAC
21213524 TTTTTTTATCTTTTTTGT
1 TTTTTTTATCTTTTTTGT
**
21213542 TTTTTTTA-AGTTTTTGCT
1 TTTTTTTATCTTTTTTG-T
21213560 TTTTTTT-TCCTTTGTTT-T
1 TTTTTTTAT-CTTT-TTTGT
21213578 TTTTTTT
1 TTTTTTT
21213585 TTTTACTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 6 0.17
18 24 0.69
19 2 0.06
20 3 0.09
ACGTcount: A:0.05, C:0.07, G:0.07, T:0.82
Consensus pattern (18 bp):
TTTTTTTATCTTTTTTGT
Found at i:21213576 original size:22 final size:21
Alignment explanation
Indices: 21213551--21213593 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21213541 TTTTTTTTAA
*
21213551 GTTTTTGCTTTTTTTTTCCTTT
1 GTTTTT-CTTTTTTTTTACTTT
*
21213573 GTTTTTTTTTTTTTTTACTTT
1 GTTTTTCTTTTTTTTTACTTT
21213594 TTATTAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.02, C:0.09, G:0.07, T:0.81
Consensus pattern (21 bp):
GTTTTTCTTTTTTTTTACTTT
Found at i:21217401 original size:19 final size:19
Alignment explanation
Indices: 21217377--21217436 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
21217367 TATTACGAAT
21217377 AATTTTTAAATTATAATAA
1 AATTTTTAAATTATAATAA
* * *
21217396 AATTTTTAATATGATATTTA
1 AATTTTTAA-ATTATAATAA
21217416 AA-TTTTAAATTATAA-AA
1 AATTTTTAAATTATAATAA
21217433 AATT
1 AATT
21217437 ATTTGTTATC
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.09
18 6 0.18
19 15 0.45
20 9 0.27
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTTTAAATTATAATAA
Found at i:21226154 original size:59 final size:59
Alignment explanation
Indices: 21226000--21226160 Score: 187
Period size: 59 Copynumber: 2.7 Consensus size: 59
21225990 AATAAATATA
* * * * * *
21226000 TAACCAAAACCTGAACAAATTTCAACAAATATAAAACCAACAAAAGCTCAACAAATTGG
1 TAACCAAAACCTAAACAAATTTCAATAAATATATAACAAATAAAAACTCAACAAATTGG
* * * * *
21226059 TAACCAAAACCCAAATAAATTTCAATAAATAAATAACTAATAAAAACTCAACACATTGG
1 TAACCAAAACCTAAACAAATTTCAATAAATATATAACAAATAAAAACTCAACAAATTGG
* * * *
21226118 TAATCAAAACTTAAACAAAATTCAATAAATTTATAACAAATAA
1 TAACCAAAACCTAAACAAATTTCAATAAATATATAACAAATAA
21226161 TTAAACCTTA
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
59 84 1.00
ACGTcount: A:0.57, C:0.18, G:0.04, T:0.22
Consensus pattern (59 bp):
TAACCAAAACCTAAACAAATTTCAATAAATATATAACAAATAAAAACTCAACAAATTGG
Found at i:21232512 original size:22 final size:21
Alignment explanation
Indices: 21232471--21232512 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
21232461 TAAACATGAC
* *
21232471 ATATACAAAGAATAATATAAT
1 ATATACAAAAAATAACATAAT
21232492 ATATACAAAAAAATAACATAA
1 ATATAC-AAAAAATAACATAA
21232513 AGGGTTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (21 bp):
ATATACAAAAAATAACATAAT
Found at i:21234178 original size:36 final size:37
Alignment explanation
Indices: 21234133--21234224 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 37
21234123 TGACTATTGA
* * *
21234133 TTTCATCCTAGTC-TTTTTTACTTTCTAACTTACGAT
1 TTTCATCCTAATCATTTTTAAATTTCTAACTTACGAT
* * *
21234169 TTTCGTCCTAATCATTTTTAAATTTCTGACTTGCGA-
1 TTTCATCCTAATCATTTTTAAATTTCTAACTTACGAT
* *
21234205 TTTCATCCTGATCATATTTA
1 TTTCATCCTAATCATTTTTA
21234225 TTTCCTAACT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
36 28 0.61
37 18 0.39
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.50
Consensus pattern (37 bp):
TTTCATCCTAATCATTTTTAAATTTCTAACTTACGAT
Found at i:21236420 original size:31 final size:31
Alignment explanation
Indices: 21236382--21236440 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
21236372 TGTTTCTACA
21236382 TTGGCATAGACATATGGTTTAGTCATTTTGC
1 TTGGCATAGACATATGGTTTAGTCATTTTGC
*
21236413 TTGGCATAGGCATATGGTTTAGTCATTT
1 TTGGCATAGACATATGGTTTAGTCATTT
21236441 AGCTCAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.42
Consensus pattern (31 bp):
TTGGCATAGACATATGGTTTAGTCATTTTGC
Found at i:21236534 original size:3 final size:3
Alignment explanation
Indices: 21236528--21236567 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
21236518 ATCCTAAAAT
21236528 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
21236568 ATAAATAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:21236929 original size:26 final size:25
Alignment explanation
Indices: 21236900--21236979 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 25
21236890 AAATGAAATC
*
21236900 TTAAAACTTTAAGTGAAACCTTAAAA
1 TTAAAACCTTAA-TGAAACCTTAAAA
*
21236926 TTAAAACCCTAAATGAAACCTTAAAA
1 TTAAAA-CCTTAATGAAACCTTAAAA
21236952 TTAAAACCTTACATGAAA-CTCTAAAA
1 TTAAAACCTTA-ATGAAACCT-TAAAA
21236978 TT
1 TT
21236980 TTAAGTGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 6 0.12
26 38 0.79
27 4 0.08
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (25 bp):
TTAAAACCTTAATGAAACCTTAAAA
Found at i:21236938 original size:14 final size:14
Alignment explanation
Indices: 21236915--21236962 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
21236905 ACTTTAAGTG
21236915 AAACCTTAAAATTA
1 AAACCTTAAAATTA
* *
21236929 AAACCCT-AAA-TG
1 AAACCTTAAAATTA
21236941 AAACCTTAAAATTA
1 AAACCTTAAAATTA
21236955 AAACCTTA
1 AAACCTTA
21236963 CATGAAACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 7 0.25
13 6 0.21
14 15 0.54
ACGTcount: A:0.54, C:0.19, G:0.02, T:0.25
Consensus pattern (14 bp):
AAACCTTAAAATTA
Found at i:21239647 original size:34 final size:36
Alignment explanation
Indices: 21239599--21239671 Score: 105
Period size: 34 Copynumber: 2.1 Consensus size: 36
21239589 TTTATATAAA
* *
21239599 TTTTTAAAAGTAAATTTT-AGAAAGTCATA-AATTT
1 TTTTTAAAAATAAATTTTCAGAAAATCATATAATTT
*
21239633 TTTTTAAAAATAAATTTTCTGAAAATCATATAATTT
1 TTTTTAAAAATAAATTTTCAGAAAATCATATAATTT
21239669 TTT
1 TTT
21239672 GAGAATAGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 17 0.50
35 9 0.26
36 8 0.24
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.48
Consensus pattern (36 bp):
TTTTTAAAAATAAATTTTCAGAAAATCATATAATTT
Found at i:21240430 original size:29 final size:30
Alignment explanation
Indices: 21240379--21240436 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
21240369 CAAATACATT
21240379 ATAGAAACTAAAAAGAGAAAAAAACACTTA
1 ATAGAAACTAAAAAGAGAAAAAAACACTTA
* *
21240409 ATAGAAACT-GAAAGAGAGAAAAACACTT
1 ATAGAAACTAAAAAGAGAAAAAAACACTT
21240437 GATTCTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.62, C:0.10, G:0.14, T:0.14
Consensus pattern (30 bp):
ATAGAAACTAAAAAGAGAAAAAAACACTTA
Found at i:21240696 original size:16 final size:16
Alignment explanation
Indices: 21240660--21240690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21240650 AATTATAAAT
*
21240660 CTTTTCAAAAATTTAA
1 CTTTTCAAAAATTCAA
21240676 CTTTTCAAAAATTCA
1 CTTTTCAAAAATTCA
21240691 TTTTTTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (16 bp):
CTTTTCAAAAATTCAA
Found at i:21247168 original size:4 final size:4
Alignment explanation
Indices: 21247159--21247186 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
21247149 AGAATAGTGT
21247159 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
21247187 TTAGTATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:21255030 original size:10 final size:10
Alignment explanation
Indices: 21255001--21255030 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
21254991 ATATATATAT
*
21255001 AGAGAGAGAG
1 AGAGAGAGAA
21255011 AGAGAGAGAA
1 AGAGAGAGAA
21255021 AGAGAGAGAA
1 AGAGAGAGAA
21255031 TAAATAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (10 bp):
AGAGAGAGAA
Found at i:21257211 original size:3 final size:3
Alignment explanation
Indices: 21257203--21257250 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
21257193 ACAATGAAAC
*
21257203 ATG ATG ATG ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
21257251 GGAATAAGGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.33
Consensus pattern (3 bp):
ATG
Done.