Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 129 of 160
Found at i:24083998 original size:30 final size:30
Alignment explanation
Indices: 24083958--24084053 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
24083948 AAAATTAACG
*
24083958 CTTTTATTCAAGAAAAATTGATACTTTCAA
1 CTTTTTTTCAAGAAAAATTGATACTTTCAA
* ** *
24083988 CTTTTTTTCAA-AAAAAAT-ATTTTTTGAAA
1 CTTTTTTTCAAGAAAAATTGATACTTT-CAA
* * *
24084017 TTTTTATTTTCAAGACAAATTGATACTCTCAA
1 -CTTT-TTTTCAAGAAAAATTGATACTTTCAA
24084049 CTTTT
1 CTTTT
24084054 CCTCGAAAAT
Statistics
Matches: 48, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
28 5 0.10
29 8 0.17
30 14 0.29
31 10 0.21
32 7 0.15
33 4 0.08
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.46
Consensus pattern (30 bp):
CTTTTTTTCAAGAAAAATTGATACTTTCAA
Found at i:24084088 original size:58 final size:59
Alignment explanation
Indices: 24083965--24084176 Score: 221
Period size: 58 Copynumber: 3.5 Consensus size: 59
24083955 ACGCTTTTAT
** * * **
24083965 TCAAGAAAAATTGATACTTTCAACTTTTTTTCAAAAAAAATATTTTTTGAAATTTTTATTT
1 TCAAGAAAAATTGATACTTTCAACTTTTCCTC--AAAAAATATTTGTTGAAAATTTTATCC
* * *
24084026 TCAAGACAAATTGATACTCTCAACTTTTCCTC-GAAAATATTTGTTGAAAATTTTATCC
1 TCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTGTTGAAAATTTTATCC
* * * * * *
24084084 TCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAAAAAATTTTTTTGGAAAGTTTCAT-T
1 TCAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAAATA-TTTGTT-GAAAATTTTATCC
24084145 TACAAGAAAAATTGATACTTTCAACTTTTCCT
1 T-CAAGAAAAATTGATACTTTCAACTTTTCCT
24084177 TTAAAAATTT
Statistics
Matches: 127, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
58 50 0.39
60 5 0.04
61 34 0.27
62 38 0.30
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.42
Consensus pattern (59 bp):
TCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTGTTGAAAATTTTATCC
Found at i:24084095 original size:119 final size:119
Alignment explanation
Indices: 24083965--24084194 Score: 347
Period size: 120 Copynumber: 1.9 Consensus size: 119
24083955 ACGCTTTTAT
* * * *
24083965 TCAAGAAAAATTGATACTTTCAACTTTTTTTC-AAAAAAAATATTTTTT-GAAATTTTTATTTTC
1 TCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAAAAAAT-TTTTTTGGAAAGTTTCATTTAC
* *
24084028 AAGACAAATTGATACTCTCAACTTTTCCTCGAAAATATTTGTTGAAAATTTTATCC
65 AAGAAAAATTGATACTCTCAACTTTTCCTCGAAAA-ATTTCTTGAAAATTTTATCC
24084084 TCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAAAAAATTTTTTTGGAAAGTTTCATTTACA
1 TCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAAAAAATTTTTTTGGAAAGTTTCATTTACA
* **
24084149 AGAAAAATTGATACTTTCAACTTTTCCTTTAAAAATTTCTTGAAAA
66 AGAAAAATTGATACTCTCAACTTTTCCTCGAAAAATTTCTTGAAAA
24084195 GTATAATTTT
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
119 48 0.48
120 52 0.52
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (119 bp):
TCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAAAAAATTTTTTTGGAAAGTTTCATTTACA
AGAAAAATTGATACTCTCAACTTTTCCTCGAAAAATTTCTTGAAAATTTTATCC
Found at i:24085938 original size:26 final size:26
Alignment explanation
Indices: 24085902--24085953 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24085892 GGTGATGGCA
*
24085902 ATGTAGTTTAGCAATAGAGCTGTAGG
1 ATGTAGTTTAGCAATAAAGCTGTAGG
24085928 ATGTAGTTTAGCAATAAAGCTGTAGG
1 ATGTAGTTTAGCAATAAAGCTGTAGG
24085954 GTGATGGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (26 bp):
ATGTAGTTTAGCAATAAAGCTGTAGG
Found at i:24086801 original size:19 final size:18
Alignment explanation
Indices: 24086779--24086838 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
24086769 TTTTGAGAAT
24086779 TATATTACATTTTCGAAAA
1 TATATTAC-TTTTCGAAAA
24086798 TATA-T--TTTT-GAAAA
1 TATATTACTTTTCGAAAA
24086812 TTATATTACTTTTTCGAAAA
1 -TATATTAC-TTTTCGAAAA
*
24086832 TAGATTA
1 TATATTA
24086839 TCGAGAACAC
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
16 1 0.03
18 1 0.03
19 14 0.41
20 5 0.15
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (18 bp):
TATATTACTTTTCGAAAA
Found at i:24086805 original size:34 final size:34
Alignment explanation
Indices: 24086760--24086833 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
24086750 AGAATTCTTA
*
24086760 AAAATAAATTTTTGAGAATTATATTACATTTTCG
1 AAAATAAATTTTTGAAAATTATATTACATTTTCG
* *
24086794 AAAATATATTTTTGAAAATTATATTACTTTTTCG
1 AAAATAAATTTTTGAAAATTATATTACATTTTCG
24086828 AAAATA
1 AAAATA
24086834 GATTATCGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (34 bp):
AAAATAAATTTTTGAAAATTATATTACATTTTCG
Found at i:24087077 original size:1 final size:1
Alignment explanation
Indices: 24087073--24087102 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
24087063 AAAAATTGAT
*
24087073 AAAAAAAAAAAAAAAAAAGAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24087103 GAAGCGGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:24087103 original size:12 final size:12
Alignment explanation
Indices: 24087073--24087105 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
24087063 AAAAATTGAT
24087073 AAAAAAA-AAAA
1 AAAAAAAGAAAA
24087084 AAAAAAAGAAAA
1 AAAAAAAGAAAA
24087096 AAAAAAAGAA
1 AAAAAAAGAA
24087106 GCGGCAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:24087523 original size:9 final size:8
Alignment explanation
Indices: 24087511--24087557 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
24087501 TACATGCTAC
24087511 TTTTTTAA
1 TTTTTTAA
24087519 CTTTTTT-A
1 -TTTTTTAA
*
24087527 TTTTTTTA
1 TTTTTTAA
*
24087535 TTTTTTTA
1 TTTTTTAA
24087543 TTTTTTAA
1 TTTTTTAA
24087551 CTTTTTT
1 -TTTTTT
24087558 TGTTTTTCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
7 6 0.17
8 17 0.49
9 12 0.34
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTAA
Found at i:24087531 original size:8 final size:8
Alignment explanation
Indices: 24087520--24087564 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
24087510 CTTTTTTAAC
24087520 TTTTTTAT
1 TTTTTTAT
24087528 TTTTTTAT
1 TTTTTTAT
24087536 TTTTTTAT
1 TTTTTTAT
*
24087544 TTTTTAACT
1 TTTTTTA-T
*
24087553 TTTTTTGT
1 TTTTTTAT
24087561 TTTT
1 TTTT
24087565 CATTTCTTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
8 27 0.82
9 6 0.18
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTAT
Found at i:24087532 original size:16 final size:16
Alignment explanation
Indices: 24087511--24087557 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
24087501 TACATGCTAC
24087511 TTTTTTAACTTTTTTA
1 TTTTTTAACTTTTTTA
* *
24087527 TTTTTTTATTTTTTTA
1 TTTTTTAACTTTTTTA
24087543 TTTTTTAACTTTTTT
1 TTTTTTAACTTTTTT
24087558 TGTTTTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTAACTTTTTTA
Found at i:24087563 original size:16 final size:15
Alignment explanation
Indices: 24087511--24087564 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 15
24087501 TACATGCTAC
24087511 TTTTTTAACTTTTTT
1 TTTTTTAACTTTTTT
* *
24087526 ATTTTTTTATTTTTTT
1 -TTTTTTAACTTTTTT
24087542 ATTTTTTAACTTTTTT
1 -TTTTTTAACTTTTTT
24087558 TGTTTTT
1 T-TTTTT
24087565 CATTTCTTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 32 0.97
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTAACTTTTTT
Found at i:24088245 original size:8 final size:8
Alignment explanation
Indices: 24088232--24088269 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
24088222 TTGTGAAAAC
24088232 TTTTTTCA
1 TTTTTTCA
24088240 TTTTTT-A
1 TTTTTTCA
24088247 TTTTTTTCA
1 -TTTTTTCA
24088256 TTTTTTCTA
1 TTTTTTC-A
24088265 TTTTT
1 TTTTT
24088270 CTATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
7 1 0.04
8 19 0.70
9 7 0.26
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTCA
Found at i:24088253 original size:16 final size:16
Alignment explanation
Indices: 24088232--24088284 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
24088222 TTGTGAAAAC
24088232 TTTTTTCATTTTTTAT
1 TTTTTTCATTTTTTAT
*
24088248 TTTTTTCATTTTTTCT
1 TTTTTTCATTTTTTAT
* *
24088264 ATTTTTC-TATTTTAT
1 TTTTTTCATTTTTTAT
24088279 TTTTTT
1 TTTTTT
24088285 AGTATTTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 11 0.34
16 21 0.66
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTCATTTTTTAT
Found at i:24098434 original size:60 final size:60
Alignment explanation
Indices: 24098353--24098472 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 60
24098343 TTGATTATCG
* *
24098353 CGAAAACTTTCTTCTTCAATATCAAAAAAGATGATG-TCAATGGAATAAAACACTTACCAC
1 CGAAAACTTTCTTCTTCAATATCAAAAAAGATGA-GATCAATAGAATAAAACACCTACCAC
* * * *
24098413 CGAAAACTTTCTTTTTTAATATCAAGAAAGATGAGATCAATAGAATAAGACACCTACCAC
1 CGAAAACTTTCTTCTTCAATATCAAAAAAGATGAGATCAATAGAATAAAACACCTACCAC
24098473 TTCTTCCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 1 0.02
60 52 0.98
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (60 bp):
CGAAAACTTTCTTCTTCAATATCAAAAAAGATGAGATCAATAGAATAAAACACCTACCAC
Found at i:24099313 original size:78 final size:78
Alignment explanation
Indices: 24099165--24099315 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 78
24099155 TCTATTACCG
* * * * *
24099165 ATTGATTTTAGATTTTTATGTTTAACATAGTATTAGAGCCCATGTTTTGTTCAATTGTTATGCCA
1 ATTGATTTTAGATTTATATATTTAACATAGTATTAGAACCCATATTTTGTTCAATTGTTATCCCA
*
24099230 CGTGAGGTTGCCA
66 AGTGAGGTTGCCA
* * * *
24099243 ATTGATTTTAGCTTTATATATTTAACATGGTATTAGAACTCATATTTTGTTCAGTTGTTA-CCCA
1 ATTGATTTTAGATTTATATATTTAACATAGTATTAGAACCCATATTTTGTTCAATTGTTATCCC-
24099307 AAGTGAGGT
65 AAGTGAGGT
24099316 ACACATGTAG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
77 2 0.03
78 60 0.97
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (78 bp):
ATTGATTTTAGATTTATATATTTAACATAGTATTAGAACCCATATTTTGTTCAATTGTTATCCCA
AGTGAGGTTGCCA
Found at i:24101795 original size:21 final size:22
Alignment explanation
Indices: 24101771--24101811 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
24101761 TTTAATTAAT
24101771 TATTTAATTTT-TATTTATACA
1 TATTTAATTTTATATTTATACA
24101792 TATTTAATTTTATATTTATA
1 TATTTAATTTTATATTTATA
24101812 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTTAATTTTATATTTATACA
Found at i:24104753 original size:22 final size:22
Alignment explanation
Indices: 24104699--24104754 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
24104689 ATAATAATCC
*
24104699 AATCGAATTCAAGTTTTCTTCG
1 AATCGAATTCGAGTTTTCTTCG
24104721 AATCGAATTCGAGTTTTCTTCG
1 AATCGAATTCGAGTTTTCTTCG
24104743 AATCGAATTCGA
1 AATCGAATTCGA
24104755 ATAGTTTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (22 bp):
AATCGAATTCGAGTTTTCTTCG
Found at i:24107951 original size:21 final size:21
Alignment explanation
Indices: 24107914--24107966 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
24107904 GACTGTTTTC
24107914 AAAA-AAA-TAAA-ATAAAAG
1 AAAATAAATTAAATATAAAAG
* *
24107932 AAATTAAATTAAATATAAAAT
1 AAAATAAATTAAATATAAAAG
*
24107953 AAAATCAATTAAAT
1 AAAATAAATTAAAT
24107967 CCAACCGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.11
19 3 0.11
20 4 0.14
21 18 0.64
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAATAAATTAAATATAAAAG
Found at i:24109075 original size:16 final size:16
Alignment explanation
Indices: 24109050--24109107 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
24109040 TTTCGGGGGG
* *
24109050 TTTTGGATTTAATAGA
1 TTTTGAATTTAATGGA
* *
24109066 TTTTGAATTTTATGGG
1 TTTTGAATTTAATGGA
* * *
24109082 GTTTGGATTTAAGGGA
1 TTTTGAATTTAATGGA
24109098 TTTTGAATTT
1 TTTTGAATTT
24109108 TTAGGAGTTT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (16 bp):
TTTTGAATTTAATGGA
Found at i:24109092 original size:32 final size:33
Alignment explanation
Indices: 24109018--24109108 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
24109008 TTTTTAGTAC
* ***
24109018 TTTGGATTTCAAG-GATTTTGGATTTCGGGGGGT
1 TTTGGATTT-AAGAGATTTTGAATTTTATGGGGT
*
24109051 TTTGGATTTAATAGATTTTGAATTTTATGGGG-
1 TTTGGATTTAAGAGATTTTGAATTTTATGGGGT
*
24109083 TTTGGATTTAAGGGATTTTGAATTTT
1 TTTGGATTTAAGAGATTTTGAATTTT
24109109 TAGGAGTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 26 0.52
33 24 0.48
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.48
Consensus pattern (33 bp):
TTTGGATTTAAGAGATTTTGAATTTTATGGGGT
Found at i:24109515 original size:19 final size:19
Alignment explanation
Indices: 24109493--24109546 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
24109483 TATCATGCAT
24109493 AAATATAAAAAAAATAACA
1 AAATATAAAAAAAATAACA
* * *
24109512 AAATA-ATAAAAAATTAGA
1 AAATATAAAAAAAATAACA
24109530 AAAT-TCAAAAAAAATAA
1 AAATAT-AAAAAAAATAA
24109547 ATTTTTTTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.19
Consensus pattern (19 bp):
AAATATAAAAAAAATAACA
Found at i:24110456 original size:21 final size:21
Alignment explanation
Indices: 24110432--24110491 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
24110422 CTAAGAGAGC
24110432 TGGTCAAGGG-GTTGGTTGGGT
1 TGGTC-AGGGAGTTGGTTGGGT
*
24110453 TGGTCGGGGAGTTGGTTGGG-
1 TGGTCAGGGAGTTGGTTGGGT
24110473 TGGCTAACAGGGAGTTGGT
1 TGG-T--CAGGGAGTTGGT
24110492 CGGGGAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.18
21 16 0.48
23 11 0.33
ACGTcount: A:0.12, C:0.07, G:0.52, T:0.30
Consensus pattern (21 bp):
TGGTCAGGGAGTTGGTTGGGT
Found at i:24110499 original size:12 final size:12
Alignment explanation
Indices: 24110482--24110513 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
24110472 GTGGCTAACA
24110482 GGGAGTTGGTCG
1 GGGAGTTGGTCG
24110494 GGGAGTTGGTCG
1 GGGAGTTGGTCG
24110506 GGGCAGTT
1 GGG-AGTT
24110514 CGATGCTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.09, C:0.09, G:0.56, T:0.25
Consensus pattern (12 bp):
GGGAGTTGGTCG
Found at i:24110567 original size:12 final size:11
Alignment explanation
Indices: 24110553--24110595 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
24110543 CTGATTTTCG
24110553 TTTGTTTTTTT
1 TTTGTTTTTTT
24110564 GTTTGTTTTATTT
1 -TTTGTTTT-TTT
24110577 TTT-TTTCTTTT
1 TTTGTTT-TTTT
24110588 TTTGTTTT
1 TTTGTTTT
24110596 GTTAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 10 0.36
12 15 0.54
13 3 0.11
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.86
Consensus pattern (11 bp):
TTTGTTTTTTT
Found at i:24113743 original size:16 final size:16
Alignment explanation
Indices: 24113722--24113774 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 16
24113712 ATATTATATT
24113722 TTTAAATAATTTTTTA
1 TTTAAATAATTTTTTA
* *
24113738 TTTAAAT-A---CTAA
1 TTTAAATAATTTTTTA
*
24113750 TTTAAATGATTTTTTA
1 TTTAAATAATTTTTTA
24113766 TTTAAATAA
1 TTTAAATAA
24113775 ATGAATTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
12 9 0.32
13 1 0.04
15 1 0.04
16 17 0.61
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TTTAAATAATTTTTTA
Found at i:24119185 original size:21 final size:21
Alignment explanation
Indices: 24119161--24119227 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
24119151 GACCTTCCAC
* *
24119161 TCCACCTCCAAGAGGAGTCAG
1 TCCAACTCCAAGGGGAGTCAG
24119182 TCCAACTCCAAGGGGAGTCAG
1 TCCAACTCCAAGGGGAGTCAG
*
24119203 TCCAACTCCAAGGGGAGTTAG
1 TCCAACTCCAAGGGGAGTCAG
24119224 TCCA
1 TCCA
24119228 TCTCGGATGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.16
Consensus pattern (21 bp):
TCCAACTCCAAGGGGAGTCAG
Found at i:24135467 original size:27 final size:26
Alignment explanation
Indices: 24135404--24135468 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
24135394 ATTTTTTAAA
24135404 AAAATAAAAAAAATAAATTTAAATTT
1 AAAATAAAAAAAATAAATTTAAATTT
* * *
24135430 AAATATGAAAAAAAT-ATTTTTAATTAT
1 AAA-ATAAAAAAAATAAATTTAAATT-T
24135457 GAAAATAAAAAA
1 -AAAATAAAAAA
24135469 TGTTCATTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 11 0.34
27 18 0.56
28 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (26 bp):
AAAATAAAAAAAATAAATTTAAATTT
Found at i:24136769 original size:23 final size:23
Alignment explanation
Indices: 24136687--24136771 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 23
24136677 TACTACTTAG
* *
24136687 AAATAAAATTATTTAATATTTTATT
1 AAATATAA-TATTT-ATATTTTAAT
*
24136712 AAA-ATCATATTTTATATTTTAATAGTT
1 AAATATAATA-TTTATATTTT-A-A--T
*
24136739 AAAAATAATATTTATATTTTAAT
1 AAATATAATATTTATATTTTAAT
24136762 AAATATAATA
1 AAATATAATA
24136772 AATATTAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
23 19 0.39
24 6 0.12
25 4 0.08
26 1 0.02
27 14 0.29
28 5 0.10
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (23 bp):
AAATATAATATTTATATTTTAAT
Found at i:24136777 original size:27 final size:27
Alignment explanation
Indices: 24136712--24136766 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
24136702 ATATTTTATT
* **
24136712 AAAATCATATTTTATATTTTAATAGTTA
1 AAAATAATA-TTTATATTTTAATAAATA
24136740 AAAATAATATTTATATTTTAATAAATA
1 AAAATAATATTTATATTTTAATAAATA
24136767 TAATAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
AAAATAATATTTATATTTTAATAAATA
Found at i:24137039 original size:16 final size:16
Alignment explanation
Indices: 24137018--24137067 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
24137008 ATAATTAATC
*
24137018 ATTTTTTAATATTTTT
1 ATTTTTTAATAATTTT
*
24137034 ATTTTTTATTAATTTT
1 ATTTTTTAATAATTTT
* * *
24137050 ATATATTATTAATTTT
1 ATTTTTTAATAATTTT
24137066 AT
1 AT
24137068 AATTATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTAATAATTTT
Found at i:24137068 original size:16 final size:15
Alignment explanation
Indices: 24137039--24137074 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
24137029 TTTTTATTTT
24137039 TTATTAATTTTATATA
1 TTATTAATTTTATA-A
24137055 TTATTAATTTTATAA
1 TTATTAATTTTATAA
24137070 TTATT
1 TTATT
24137075 TTTTATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTAATTTTATAA
Found at i:24137984 original size:31 final size:31
Alignment explanation
Indices: 24137949--24138012 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
24137939 TCCTTCCCTC
*
24137949 TTCTGTTTTCCTGTCTTCACCGTTACTCCAT
1 TTCTGTTTTCCTGTCTTCACCATTACTCCAT
24137980 TTCTGTTTTCCTGTCTTCACCATTACTCCAT
1 TTCTGTTTTCCTGTCTTCACCATTACTCCAT
24138011 TT
1 TT
24138013 TCCTTCCTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.11, C:0.31, G:0.08, T:0.50
Consensus pattern (31 bp):
TTCTGTTTTCCTGTCTTCACCATTACTCCAT
Found at i:24140892 original size:30 final size:30
Alignment explanation
Indices: 24140858--24140922 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
24140848 TGAGTAATAG
* ** *
24140858 ATAAAGTACCACATTAAGTTATTAATTATC
1 ATAAAGAACCACATTAAAATATTAATTAGC
*
24140888 ATAAAGAACTACATTAAAATATTAATTAGC
1 ATAAAGAACCACATTAAAATATTAATTAGC
24140918 ATAAA
1 ATAAA
24140923 AATGTAGATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (30 bp):
ATAAAGAACCACATTAAAATATTAATTAGC
Found at i:24147308 original size:19 final size:20
Alignment explanation
Indices: 24147262--24147318 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 20
24147252 TAGATAATAT
24147262 TTTTAATTAAAATAATAAAA
1 TTTTAATTAAAATAATAAAA
* * *
24147282 ATAT-ATTAAAAT-TTAAAA
1 TTTTAATTAAAATAATAAAA
*
24147300 TTTTAATTAAATTAATAAA
1 TTTTAATTAAAATAATAAA
24147319 TTATTTAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
18 7 0.25
19 15 0.54
20 6 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTTAATTAAAATAATAAAA
Found at i:24150559 original size:26 final size:27
Alignment explanation
Indices: 24150520--24150577 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
24150510 TTGCATTATA
*
24150520 ATAAACTTACTAATGTTCCAATTACTC
1 ATAAACTTACTAATATTCCAATTACTC
* ** *
24150547 ATAAA-TTATTAATATTTGAATTATTC
1 ATAAACTTACTAATATTCCAATTACTC
24150573 ATAAA
1 ATAAA
24150578 AAATGAGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.41
Consensus pattern (27 bp):
ATAAACTTACTAATATTCCAATTACTC
Found at i:24150749 original size:67 final size:68
Alignment explanation
Indices: 24150616--24150750 Score: 236
Period size: 67 Copynumber: 2.0 Consensus size: 68
24150606 ATTGGTACTT
* * *
24150616 ATCAAAATATTTATATTCAATTACATACACAACAATAATATATATTTCTTTTCAAAGAATTCAAA
1 ATCAAAATATTCATATTCAATTAAATACACAACAATAATATATATTTCTTTGCAAAGAATTCAAA
24150681 AAA
66 AAA
24150684 ATCAAAATATTCATATTCAATTAAATACACAAC-ATAATATATATTTCTTTGCAAAGAATTCAAA
1 ATCAAAATATTCATATTCAATTAAATACACAACAATAATATATATTTCTTTGCAAAGAATTCAAA
24150748 AAA
66 AAA
24150751 TTAATTAATT
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 33 0.52
68 31 0.48
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.34
Consensus pattern (68 bp):
ATCAAAATATTCATATTCAATTAAATACACAACAATAATATATATTTCTTTGCAAAGAATTCAAA
AAA
Found at i:24151333 original size:13 final size:15
Alignment explanation
Indices: 24151317--24151349 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
24151307 TATTATTAAA
24151317 AATTTTTAA-TTC-T
1 AATTTTTAAGTTCTT
24151330 AATTTTTAAGTTCTT
1 AATTTTTAAGTTCTT
24151345 AATTT
1 AATTT
24151350 ATTTATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (15 bp):
AATTTTTAAGTTCTT
Found at i:24152811 original size:22 final size:21
Alignment explanation
Indices: 24152786--24152831 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
24152776 AAAGGAAAGG
24152786 CATCACCAACTAAAATAGGGAC
1 CATCACCAACTAAAATAGGG-C
*
24152808 CATCACCAACTGAAATAGGGC
1 CATCACCAACTAAAATAGGGC
24152829 CAT
1 CAT
24152832 TAATCAGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.41, C:0.28, G:0.15, T:0.15
Consensus pattern (21 bp):
CATCACCAACTAAAATAGGGC
Found at i:24155700 original size:29 final size:30
Alignment explanation
Indices: 24155668--24155739 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
24155658 CATCTTAATT
*
24155668 ATATATAAATATAAT-ATTTTCTTAA-ATAA
1 ATATATAAATATAATAATTTTATTAATAT-A
*
24155697 ATATATTAA-ATAATAATTTTATTAATATA
1 ATATATAAATATAATAATTTTATTAATATA
24155726 ATATATAAAT-TAAT
1 ATATATAAATATAAT
24155740 GCCTCAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 5 0.14
29 30 0.81
30 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
ATATATAAATATAATAATTTTATTAATATA
Found at i:24156303 original size:10 final size:11
Alignment explanation
Indices: 24156288--24156324 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
24156278 TTTGACCTGT
24156288 TATATA-AGTA
1 TATATATAGTA
24156298 TATATATA-TA
1 TATATATAGTA
24156308 TATATATATGTA
1 TATATATA-GTA
24156320 TATAT
1 TATAT
24156325 GTATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 16 0.67
11 1 0.04
12 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (11 bp):
TATATATAGTA
Found at i:24156329 original size:12 final size:12
Alignment explanation
Indices: 24156288--24156337 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
24156278 TTTGACCTGT
*
24156288 TATATAAGTATA
1 TATATATGTATA
24156300 TATATA--TATA
1 TATATATGTATA
24156310 TATATATGTATA
1 TATATATGTATA
* *
24156322 TATGTATGTATG
1 TATATATGTATA
24156334 TATA
1 TATA
24156338 ACTTGTATCC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 10 0.30
12 23 0.70
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
TATATATGTATA
Found at i:24156333 original size:8 final size:8
Alignment explanation
Indices: 24156288--24156337 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
24156278 TTTGACCTGT
*
24156288 TATATAAG
1 TATATATG
24156296 TATATA--
1 TATATATG
*
24156302 TATATATA
1 TATATATG
24156310 TATATATG
1 TATATATG
24156318 TATATATG
1 TATATATG
*
24156326 TATGTATG
1 TATATATG
24156334 TATA
1 TATA
24156338 ACTTGTATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 6 0.16
8 31 0.84
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (8 bp):
TATATATG
Found at i:24156866 original size:16 final size:16
Alignment explanation
Indices: 24156845--24156878 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
24156835 AATATATGCT
24156845 TAAAT-ATAAAATTAAA
1 TAAATAATAAAA-TAAA
24156861 TAAATAATAAAATAAA
1 TAAATAATAAAATAAA
24156877 TA
1 TA
24156879 TCCTATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAATAATAAAATAAA
Found at i:24157725 original size:30 final size:29
Alignment explanation
Indices: 24157649--24157728 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
24157639 ATAATTTAAT
* * *
24157649 AATTATTTAGATCTTTAATATTTTATCAC
1 AATTAATTAAATCTTTAATTTTTTATCAC
* **
24157678 AATTAATTAAATTTTTAATTTTTTATTTC
1 AATTAATTAAATCTTTAATTTTTTATCAC
*
24157707 AAGTTAATTGAATCTTTAATTT
1 AA-TTAATTAAATCTTTAATTT
24157729 GATAAAATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (29 bp):
AATTAATTAAATCTTTAATTTTTTATCAC
Found at i:24157939 original size:26 final size:26
Alignment explanation
Indices: 24157896--24157948 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24157886 ATATTTATTA
* *
24157896 ATTTTATTGATGTAAAATGAAATTTT
1 ATTTTATTGATGTAAAATAAAAATTT
*
24157922 ATTTTAATTGAT-TTAAATAAAAATTT
1 ATTTT-ATTGATGTAAAATAAAAATTT
24157948 A
1 A
24157949 ATTAGCTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
ATTTTATTGATGTAAAATAAAAATTT
Found at i:24158759 original size:32 final size:31
Alignment explanation
Indices: 24158722--24158801 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 31
24158712 TTATTAAATA
*
24158722 TTTAATTTAATATGATATTTAATTTTAAATTT
1 TTTAATTTAATAT-ATATTTAATTATAAATTT
*
24158754 TTTAATATAATATATA---AATTATAAATTT
1 TTTAATTTAATATATATTTAATTATAAATTT
*
24158782 ATTAA-TTAATATAATATTTA
1 TTTAATTTAATAT-ATATTTA
24158802 TAAAATTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 6 0.15
28 18 0.45
31 4 0.10
32 12 0.30
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
TTTAATTTAATATATATTTAATTATAAATTT
Found at i:24158802 original size:27 final size:28
Alignment explanation
Indices: 24158728--24158811 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 28
24158718 AATATTTAAT
* * *
24158728 TTAATATGATATTTAATTT-TAAATTTT
1 TTAATATAATATATAATTTATAAATTTA
*
24158755 TTAATATAATATATAAATTATAAATTTA
1 TTAATATAATATATAATTTATAAATTTA
*
24158783 TTAAT-TAATATA-ATATTTATAAAATTA
1 TTAATATAATATATA-ATTTATAAATTTA
24158810 TT
1 TT
24158812 TGTTTTTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.02
27 36 0.73
28 12 0.24
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (28 bp):
TTAATATAATATATAATTTATAAATTTA
Found at i:24158864 original size:18 final size:19
Alignment explanation
Indices: 24158841--24158877 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24158831 TTTGAAATTA
24158841 ATTATATT-ATAAATAAAT
1 ATTATATTAATAAATAAAT
*
24158859 ATTATATTAATTAATAAAT
1 ATTATATTAATAAATAAAT
24158878 TTTTAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTATATTAATAAATAAAT
Found at i:24160920 original size:63 final size:63
Alignment explanation
Indices: 24160822--24160970 Score: 156
Period size: 63 Copynumber: 2.3 Consensus size: 63
24160812 AAAAACTACA
* * * * * * *
24160822 TTAAATAATCCTTTTTCTGTTTTGATAAATTGATTATTTAAGGTATTTTTGTACAGAAAATA-CC
1 TTAAATAAT-CATTTTATATTTTGATAAATAGATTATTTAAGGCATTTATGTACA-AAAAAAGCC
* * * * *
24160886 TTAAATAATTATTTTATATTTTTATAAATAGATTATTTAATGCGTTTATGTACAAAAAAAGTC
1 TTAAATAATCATTTTATATTTTGATAAATAGATTATTTAAGGCATTTATGTACAAAAAAAGCC
*
24160949 TTGAATAATCATTTTATATTTT
1 TTAAATAATCATTTTATATTTT
24160971 AAGATTTAGG
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
62 5 0.07
63 56 0.80
64 9 0.13
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (63 bp):
TTAAATAATCATTTTATATTTTGATAAATAGATTATTTAAGGCATTTATGTACAAAAAAAGCC
Found at i:24162290 original size:9 final size:9
Alignment explanation
Indices: 24162274--24162303 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
24162264 TTATACGAGT
24162274 ACATGTTTA
1 ACATGTTTA
*
24162283 ATATGTTTA
1 ACATGTTTA
24162292 ACATGTTTA
1 ACATGTTTA
24162301 ACA
1 ACA
24162304 CTTTTTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (9 bp):
ACATGTTTA
Found at i:24164098 original size:54 final size:54
Alignment explanation
Indices: 24164034--24164140 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 54
24164024 CAGGCTTTGA
* *
24164034 TCCTTAGCCACTGGATGTGATATTATAATGTTATTTTTGAATTTCTAACATATG
1 TCCTTAGCCACTAGATGTGATATTATAATGTTATTGTTGAATTTCTAACATATG
*
24164088 TCCTTAGCCACTAGATGTGATATTATAATGTTATTGTTGATTTTCTAACATAT
1 TCCTTAGCCACTAGATGTGATATTATAATGTTATTGTTGAATTTCTAACATAT
24164141 ATGTTTGAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (54 bp):
TCCTTAGCCACTAGATGTGATATTATAATGTTATTGTTGAATTTCTAACATATG
Found at i:24166290 original size:13 final size:13
Alignment explanation
Indices: 24166272--24166298 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24166262 CTCTTACCCT
24166272 TTAGGTATTTATA
1 TTAGGTATTTATA
24166285 TTAGGTATTTATA
1 TTAGGTATTTATA
24166298 T
1 T
24166299 CAATCAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (13 bp):
TTAGGTATTTATA
Found at i:24171213 original size:17 final size:17
Alignment explanation
Indices: 24171191--24171224 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24171181 GCTTATACAA
*
24171191 TTTTTTTACTTCTTTTT
1 TTTTTTTACTTATTTTT
*
24171208 TTTTTTTGCTTATTTTT
1 TTTTTTTACTTATTTTT
24171225 CATTTGCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTTTACTTATTTTT
Found at i:24178453 original size:27 final size:27
Alignment explanation
Indices: 24178404--24178456 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
24178394 CCTGTTGAGT
* *
24178404 TTTAAAATATTAATTTATTAAATTAAG
1 TTTAAAATATTAATATATAAAATTAAG
24178431 TTTAAAATATATAA-ATATAAAATTAA
1 TTTAAAATAT-TAATATATAAAATTAA
24178457 ACTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTAAAATATTAATATATAAAATTAAG
Found at i:24179014 original size:2 final size:2
Alignment explanation
Indices: 24179009--24179051 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
24178999 ATATGTGTGG
24179009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24179051 A
1 A
24179052 ATAGGATGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24179532 original size:11 final size:12
Alignment explanation
Indices: 24179514--24179543 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
24179504 ACGTAAATAC
24179514 TTTAAAAATTTA
1 TTTAAAAATTTA
24179526 TTTAAAAATTTA
1 TTTAAAAATTTA
24179538 TTTAAA
1 TTTAAA
24179544 TTAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAAAAATTTA
Found at i:24199612 original size:28 final size:26
Alignment explanation
Indices: 24199560--24199614 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 26
24199550 TGGTACAAAT
*
24199560 AATAAAATAAAAAATTATTTGAATAA
1 AATAAAATAAAAAATTATTTAAATAA
*
24199586 AATAAAAGTATAAAATTTATTTAAATAA
1 AATAAAA-TA-AAAAATTATTTAAATAA
24199614 A
1 A
24199615 GTGATATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.28
27 2 0.08
28 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (26 bp):
AATAAAATAAAAAATTATTTAAATAA
Found at i:24200014 original size:23 final size:23
Alignment explanation
Indices: 24199988--24200044 Score: 55
Period size: 23 Copynumber: 2.4 Consensus size: 23
24199978 AGTTAATAAG
*
24199988 ATAACATATATTTT-TTAAAATAT
1 ATAA-ATATATTTTATTAAAAAAT
*
24200011 ATAAA-AAATTTTAATTAAAAAAT
1 ATAAATATATTTT-ATTAAAAAAT
24200034 ATAATATATAT
1 ATAA-ATATAT
24200045 CAATTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
21 6 0.22
22 1 0.04
23 16 0.59
24 1 0.04
25 3 0.11
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAAATATATTTTATTAAAAAAT
Found at i:24204501 original size:12 final size:12
Alignment explanation
Indices: 24204481--24204514 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24204471 GACTTGATTT
*
24204481 TATTAAAATTGA
1 TATTTAAATTGA
24204493 TATTTAAATTGA
1 TATTTAAATTGA
*
24204505 CATTTAAATT
1 TATTTAAATT
24204515 TAATTAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (12 bp):
TATTTAAATTGA
Found at i:24204815 original size:13 final size:13
Alignment explanation
Indices: 24204783--24204816 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
24204773 ATAATTAAGT
24204783 AATTAATTAAAATA
1 AATTAA-TAAAATA
24204797 AA-TAATAAAATA
1 AATTAATAAAATA
24204809 AATTAATA
1 AATTAATA
24204817 TTAGTGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.47
13 8 0.42
14 2 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATTAATAAAATA
Found at i:24205430 original size:21 final size:22
Alignment explanation
Indices: 24205404--24205451 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
24205394 TGTTAAAAAC
24205404 TTTTAAAAATCAT-AAAA-ATAA
1 TTTTAAAAAT-ATAAAAATATAA
24205425 TTTT-AAAATATAAAAATATAA
1 TTTTAAAAATATAAAAATATAA
24205446 TTTTAA
1 TTTTAA
24205452 GTATTCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 2 0.08
20 9 0.38
21 12 0.50
22 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTAAAAATATAAAAATATAA
Found at i:24206090 original size:12 final size:12
Alignment explanation
Indices: 24206028--24206095 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
24206018 TAATATTTTA
24206028 AAAATTTTTGAT
1 AAAATTTTTGAT
*
24206040 -AAA-CTTTGAT
1 AAAATTTTTGAT
* *
24206050 ACATTTTTTAGAT
1 AAAATTTTT-GAT
*
24206063 AAATACTTTT-ACT
1 AAA-ATTTTTGA-T
24206076 AAAATTTTTGAT
1 AAAATTTTTGAT
24206088 AAAATTTT
1 AAAATTTT
24206096 CACCATTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
10 6 0.14
11 4 0.10
12 18 0.43
13 10 0.24
14 4 0.10
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (12 bp):
AAAATTTTTGAT
Found at i:24208011 original size:16 final size:16
Alignment explanation
Indices: 24207992--24208036 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
24207982 ATTAATTATT
24207992 TATATATATATTTTTA
1 TATATATATATTTTTA
24208008 TATA-ATGATATTTTTA
1 TATATAT-ATATTTTTA
* *
24208024 AATATTTATATTT
1 TATATATATATTT
24208037 AAAAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 2 0.08
16 22 0.88
17 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATATATATATTTTTA
Found at i:24208062 original size:22 final size:21
Alignment explanation
Indices: 24208024--24208076 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
24208014 GATATTTTTA
*
24208024 AATA-TTTATATTTAAAAAAT
1 AATATTTTATATTTTAAAAAT
24208044 AATATTTTATATTTTAAAAAT
1 AATATTTTATATTTTAAAAAT
24208065 AATATTTT-TATT
1 AATATTTTATATT
24208077 AATTTCGGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 8 0.26
21 23 0.74
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
AATATTTTATATTTTAAAAAT
Found at i:24216948 original size:20 final size:21
Alignment explanation
Indices: 24216912--24216963 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
24216902 CCCGAAATTA
24216912 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
24216934 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
24216955 AT-AAATATT
1 ATAAAATATT
24216964 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:24216954 original size:21 final size:22
Alignment explanation
Indices: 24216912--24216963 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
24216902 CCCGAAATTA
24216912 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
24216934 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
24216955 AT-AAATATT
1 ATAAAATATT
24216964 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:24216972 original size:16 final size:16
Alignment explanation
Indices: 24216951--24216993 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
24216941 ATTATTTTTT
*
24216951 AAATATAAATATTTAA
1 AAATATAAATATATAA
* *
24216967 AAATATCATTATATAA
1 AAATATAAATATATAA
*
24216983 ATATATAAATA
1 AAATATAAATA
24216994 AAAAATTAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:24217513 original size:102 final size:102
Alignment explanation
Indices: 24217330--24217515 Score: 291
Period size: 102 Copynumber: 1.8 Consensus size: 102
24217320 CCATGACACT
*
24217330 CTTCACCATCCTTACAACTTCTACACAAGCGTTTAGCTTCAAAAAGTCATGCAAATTTGTGTCCT
1 CTTCACCATCCTTACAACTTCTACACAAGCGTTTAGCTTCAAAAAGTCATCCAAATTTGTGTCCT
* *
24217395 TTGATAAGCCCCATCTTGTCAAATATGCGATTGTACA
66 TTGATAAACCCAATCTTGTCAAATATGCGATTGTACA
* * * * * *
24217432 CTTCACCATCCTTGCATCTTCTGCACAAGGGTTTAGTTTCAAATAGTCATCCAAATTTGTGTCCT
1 CTTCACCATCCTTACAACTTCTACACAAGCGTTTAGCTTCAAAAAGTCATCCAAATTTGTGTCCT
24217497 TTGATAAACCCAATCTTGT
66 TTGATAAACCCAATCTTGT
24217516 AAAAAATAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 75 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34
Consensus pattern (102 bp):
CTTCACCATCCTTACAACTTCTACACAAGCGTTTAGCTTCAAAAAGTCATCCAAATTTGTGTCCT
TTGATAAACCCAATCTTGTCAAATATGCGATTGTACA
Found at i:24221799 original size:6 final size:6
Alignment explanation
Indices: 24221788--24221812 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24221778 TAGATACAGC
24221788 AAAGAG AAAGAG AAAGAG AAAGAG A
1 AAAGAG AAAGAG AAAGAG AAAGAG A
24221813 TTGAGGCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGAG
Found at i:24224871 original size:2 final size:2
Alignment explanation
Indices: 24224864--24224895 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24224854 CCTTTCAATA
24224864 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24224896 CCCCTAACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24230775 original size:20 final size:20
Alignment explanation
Indices: 24230750--24230789 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
24230740 TAAATGAACT
*
24230750 CAATTACGATGTTTATTGTA
1 CAATTACAATGTTTATTGTA
24230770 CAATTACAATGTTTATTGTA
1 CAATTACAATGTTTATTGTA
24230790 TATAAACGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
CAATTACAATGTTTATTGTA
Found at i:24231343 original size:13 final size:13
Alignment explanation
Indices: 24231325--24231350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24231315 TGTTCCCTAA
24231325 TTGCAACATGTAT
1 TTGCAACATGTAT
24231338 TTGCAACATGTAT
1 TTGCAACATGTAT
24231351 AATGGATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGCAACATGTAT
Found at i:24241570 original size:51 final size:50
Alignment explanation
Indices: 24241497--24241596 Score: 146
Period size: 51 Copynumber: 2.0 Consensus size: 50
24241487 AATTTTTTTA
24241497 TTTTACAAGTTTTATTTCTAAATTTTTCACAATTTGGGTCAATTTAGAAT
1 TTTTACAAGTTTTATTTCTAAATTTTTCACAATTTGGGTCAATTTAGAAT
* * * **
24241547 TTTTAACAAGTTTTATTTTTAAATTTTTTACTATTTGGGTCTCTTTAGAA
1 TTTT-ACAAGTTTTATTTCTAAATTTTTCACAATTTGGGTCAATTTAGAA
24241597 AAAAGCTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 4 0.09
51 40 0.91
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.53
Consensus pattern (50 bp):
TTTTACAAGTTTTATTTCTAAATTTTTCACAATTTGGGTCAATTTAGAAT
Found at i:24242205 original size:202 final size:202
Alignment explanation
Indices: 24241836--24242211 Score: 433
Period size: 202 Copynumber: 1.9 Consensus size: 202
24241826 ATAATTACTT
* * * *
24241836 TTATTAAAATTTTATCTAAATTATTTCACAATTTGGAGCAAATTTAGAGACATTTTTCACCTAGA
1 TTATTAAAATTTTATCTAAATTATTTCACAATTTGGAGCAAATTTAAAAAAATTTCTCACCTAGA
* * *
24241901 AATTTATTAAAAAATTTACCAATTAAAATTTCTAAGATTCTCATTATTGAGTAATTAGTATTTAA
66 AATTTATTAAAAAATTAACCAATTAAAATTTCTAAAATTCTCATTATTGAGTAAGTAGTATTTAA
*** * *
24241966 TTTCAAAATTTTTATTAAAATTTTGTTTTTTTATTTTTATTTTTTAAAATTGAAAATAAATATTA
131 TTTCAAAAAAATTATTAAAATTTTATTTTTTTATTTTTAATTTTTAAAATTGAAAATAAATATTA
24242031 ATTATCA
196 ATTATCA
*
24242038 TTATTGAAATTTTATCTAAATTATTTCACAATTT-GAGACAAATTTAAAAAAATTTCTCACCTAA
1 TTATTAAAATTTTATCTAAATTATTTCACAATTTGGAG-CAAATTTAAAAAAATTTCTCACCT-A
* * ** ** * *
24242102 GAATTTTA-T-AGAAATTAACCTTTTGTAATTTTTAAAAATT-TCATTATTG-GATAAGTATTAT
64 GAAATTTATTAAAAAATTAACCAATTAAAATTTCT-AAAATTCTCATTATTGAG-TAAGTAGTAT
**
24242163 TT-A-TTCTAAAAAAATTATTAATTTTTTATTTTGTTCTATTTTTAATTTT
127 TTAATTTC-AAAAAAATTATTAAAATTTTATTTT-TT-TATTTTTAATTTT
24242212 CTTCTCTAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
199 3 0.02
200 21 0.15
201 41 0.28
202 71 0.49
203 8 0.06
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.48
Consensus pattern (202 bp):
TTATTAAAATTTTATCTAAATTATTTCACAATTTGGAGCAAATTTAAAAAAATTTCTCACCTAGA
AATTTATTAAAAAATTAACCAATTAAAATTTCTAAAATTCTCATTATTGAGTAAGTAGTATTTAA
TTTCAAAAAAATTATTAAAATTTTATTTTTTTATTTTTAATTTTTAAAATTGAAAATAAATATTA
ATTATCA
Found at i:24242206 original size:16 final size:17
Alignment explanation
Indices: 24242183--24242216 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24242173 AAAATTATTA
* *
24242183 ATTTTTTATTTTGTTCT
1 ATTTTTAATTTTCTTCT
24242200 ATTTTTAATTTTCTTCT
1 ATTTTTAATTTTCTTCT
24242217 CTAATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTTCTTCT
Found at i:24242280 original size:14 final size:14
Alignment explanation
Indices: 24242261--24242291 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24242251 ATTTAAAGAT
24242261 AAATAAACAAAATA
1 AAATAAACAAAATA
*
24242275 AAATAAATAAAATA
1 AAATAAACAAAATA
24242289 AAA
1 AAA
24242292 ATACCAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (14 bp):
AAATAAACAAAATA
Found at i:24243428 original size:18 final size:18
Alignment explanation
Indices: 24243407--24243442 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24243397 TTTCACAAAG
*
24243407 TTTTTCAGCTTAGCAAGA
1 TTTTTCAACTTAGCAAGA
*
24243425 TTTTTCAACTTCGCAAGA
1 TTTTTCAACTTAGCAAGA
24243443 ATATAGATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (18 bp):
TTTTTCAACTTAGCAAGA
Found at i:24243492 original size:31 final size:32
Alignment explanation
Indices: 24243427--24243492 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
24243417 TAGCAAGATT
*
24243427 TTTCAACTTCGCAAGAATATAGATTTACAAAA
1 TTTCAAATTCGCAAGAATATAGATTTACAAAA
* *
24243459 TTTCAAATTTGCAAGAAT-TTGA-TTACCAAAA
1 TTTCAAATTCGCAAGAATATAGATTTA-CAAAA
24243490 TTT
1 TTT
24243493 TAGTTTCACA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 3 0.10
31 11 0.37
32 16 0.53
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (32 bp):
TTTCAAATTCGCAAGAATATAGATTTACAAAA
Found at i:24243893 original size:44 final size:45
Alignment explanation
Indices: 24243804--24243898 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 45
24243794 CTCAATCAAG
* *
24243804 TTCAAATATTCATATTCGATAAATTTTAGAGTTTCACATCTAAA-
1 TTCAAATATTCATATTCGATAAATTTTAGAGATTCACATCAAAAT
*
24243848 TTCAAATATTCTTATTC-A-AAATATTTA-AGGATTCACATCCAAAAT
1 TTCAAATATTCATATTCGATAAAT-TTTAGA-GATTCACAT-CAAAAT
24243893 TTCAAA
1 TTCAAA
24243899 GCTTTTCATT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
42 5 0.11
43 13 0.30
44 20 0.45
45 6 0.14
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (45 bp):
TTCAAATATTCATATTCGATAAATTTTAGAGATTCACATCAAAAT
Found at i:24244012 original size:14 final size:14
Alignment explanation
Indices: 24243993--24244030 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
24243983 CTCAATATTC
24243993 TCATTCAAAAATTT
1 TCATTCAAAAATTT
*
24244007 TCATTCAAAGATTT
1 TCATTCAAAAATTT
*
24244021 TCATTTAAAA
1 TCATTCAAAA
24244031 CTAAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (14 bp):
TCATTCAAAAATTT
Found at i:24244061 original size:43 final size:45
Alignment explanation
Indices: 24244004--24244088 Score: 122
Period size: 43 Copynumber: 1.9 Consensus size: 45
24243994 CATTCAAAAA
*
24244004 TTTTCATTCAAAGATT-TTCATTTAAAACTAAAATATTGTCATAAT
1 TTTTCATTCAAAGATTCTT-ATTTAAAACTAAAATATTCTCATAAT
*
24244049 TTTTC-TT-AAAGATTCTTATTTAAAACTCAAATATTCTCAT
1 TTTTCATTCAAAGATTCTTATTTAAAACTAAAATATTCTCAT
24244089 TCAAAACTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
43 28 0.76
44 4 0.11
45 5 0.14
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.46
Consensus pattern (45 bp):
TTTTCATTCAAAGATTCTTATTTAAAACTAAAATATTCTCATAAT
Found at i:24244084 original size:21 final size:21
Alignment explanation
Indices: 24244056--24244193 Score: 168
Period size: 21 Copynumber: 6.4 Consensus size: 21
24244046 AATTTTTCTT
* *
24244056 AAAGATTCTTATTTAAAACTC
1 AAAGATTCTCATTCAAAACTC
*
24244077 AAATATTCTCATTCAAAACTC
1 AAAGATTCTCATTCAAAACTC
*
24244098 AAATATTCTCATTCAAAACTTC
1 AAAGATTCTCATTCAAAAC-TC
* * *
24244120 TTAAAGATTTTCTTTTAAAACTC
1 --AAAGATTCTCATTCAAAACTC
*
24244143 AAAGATTCTCATTCAAAACTT
1 AAAGATTCTCATTCAAAACTC
*
24244164 AAAGATTCTCATTCAAAACTT
1 AAAGATTCTCATTCAAAACTC
24244185 AAAGATTCT
1 AAAGATTCT
24244194 TATCACTTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
21 84 0.82
22 2 0.02
23 2 0.02
24 15 0.15
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (21 bp):
AAAGATTCTCATTCAAAACTC
Found at i:24244143 original size:66 final size:66
Alignment explanation
Indices: 24244051--24244196 Score: 219
Period size: 66 Copynumber: 2.3 Consensus size: 66
24244041 GTCATAATTT
* *
24244051 TTCTTAAAGATTCTTATTTAAAACTCAAATATTCTCATTCAAAACTCAAATATTCTCATTCAAAA
1 TTCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTCAAAACTCAAAGATTCTCATTCAAAA
24244116 C
66 C
* *
24244117 TTCTTAAAGATT-TTCTTTTAAAACTCAAAGATTCTCATTCAAAACTTAAAGATTCTCATTCAAA
1 TTCTTAAAGATTCTT-ATTTAAAACTCAAAGATTCTCATTCAAAACTCAAAGATTCTCATTCAAA
24244181 A-
65 AC
24244182 --CTTAAAGATTCTTAT
1 TTCTTAAAGATTCTTAT
24244197 CACTTTTAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
63 11 0.15
64 2 0.03
65 2 0.03
66 58 0.79
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.39
Consensus pattern (66 bp):
TTCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTCAAAACTCAAAGATTCTCATTCAAAA
C
Found at i:24245354 original size:15 final size:15
Alignment explanation
Indices: 24245329--24245369 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
24245319 TATCCTTTTC
24245329 TTTTATTTTTCA-TT
1 TTTTATTTTTCACTT
24245343 TTTTACTTTTTCACTTT
1 TTTTA-TTTTTCAC-TT
24245360 TTTTATTTTT
1 TTTTATTTTT
24245370 TTTACTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.21
15 7 0.29
16 5 0.21
17 7 0.29
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTCACTT
Found at i:24249032 original size:51 final size:51
Alignment explanation
Indices: 24248936--24249035 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
24248926 TTTTTTTTTA
* * *
24248936 TTTTACAAGTTTTATTTCTGAATTTTCCACCATTTGAGTCAATTTAAAATT
1 TTTTACAAGTTTTATTTCTAAATTTTCCACAATTTGAGGCAATTTAAAATT
* *
24248987 TTTTACAAGTTTTATTTCTAAATTTTCCACAATTTGGGGCTATTTAAAA
1 TTTTACAAGTTTTATTTCTAAATTTTCCACAATTTGAGGCAATTTAAAA
24249036 AAAAACTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (51 bp):
TTTTACAAGTTTTATTTCTAAATTTTCCACAATTTGAGGCAATTTAAAATT
Found at i:24249719 original size:18 final size:18
Alignment explanation
Indices: 24249696--24249744 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
24249686 AAATACTTTA
24249696 AAAATAACCAAACAAAAT
1 AAAATAACCAAACAAAAT
** *
24249714 AAAATAAATAAATAAAAT
1 AAAATAACCAAACAAAAT
24249732 AAAATAAACCAAA
1 AAAAT-AACCAAA
24249745 ACAGGAACCA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAATAACCAAACAAAAT
Found at i:24250277 original size:12 final size:14
Alignment explanation
Indices: 24250249--24250280 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
24250239 GATATACAAC
24250249 AAATAAGTAAGATA
1 AAATAAGTAAGATA
24250263 AAATAAGT-A-ATA
1 AAATAAGTAAGATA
24250275 AAATAA
1 AAATAA
24250281 AATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 1 0.06
14 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (14 bp):
AAATAAGTAAGATA
Found at i:24250745 original size:9 final size:9
Alignment explanation
Indices: 24250731--24250762 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
24250721 ATAAGGAGGC
*
24250731 CATTCCATT
1 CATTCCCTT
24250740 CATTCCCTT
1 CATTCCCTT
24250749 CATTCCCTT
1 CATTCCCTT
24250758 CATTC
1 CATTC
24250763 TACTATCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.44
Consensus pattern (9 bp):
CATTCCCTT
Found at i:24250819 original size:16 final size:16
Alignment explanation
Indices: 24250800--24250830 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24250790 CTTTTTAAAT
24250800 TTTAGTTTTTTAGTTC
1 TTTAGTTTTTTAGTTC
*
24250816 TTTATTTTTTTAGTT
1 TTTAGTTTTTTAGTT
24250831 GAATTATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.10, T:0.74
Consensus pattern (16 bp):
TTTAGTTTTTTAGTTC
Found at i:24254775 original size:14 final size:16
Alignment explanation
Indices: 24254756--24254793 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
24254746 TTATATATGT
24254756 TTAAAAA-T-TAAATA
1 TTAAAAATTCTAAATA
24254770 TTAAAAATTTCTAAATA
1 TTAAAAA-TTCTAAATA
24254787 TTAAAAA
1 TTAAAAA
24254794 ATAATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
16 1 0.05
17 13 0.62
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAAAATTCTAAATA
Found at i:24254886 original size:19 final size:19
Alignment explanation
Indices: 24254846--24254900 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
24254836 TCTAAATTTA
24254846 AAAAAATAAAATATGATTTTTT
1 AAAAAATAAAAT-T--TTTTTT
* * *
24254868 TAGAAATATAATTTTTTTT
1 AAAAAATAAAATTTTTTTT
24254887 AAAAAATAAAATTT
1 AAAAAATAAAATTT
24254901 ATAAAAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 17 0.63
21 1 0.04
22 9 0.33
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AAAAAATAAAATTTTTTTT
Found at i:24254895 original size:17 final size:18
Alignment explanation
Indices: 24254862--24254895 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24254852 TAAAATATGA
*
24254862 TTTTTTTAGAAATATAAT
1 TTTTTTTAGAAAAATAAT
24254880 TTTTTTTA-AAAAATAA
1 TTTTTTTAGAAAAATAA
24254896 AATTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTTTTAGAAAAATAAT
Found at i:24254907 original size:17 final size:19
Alignment explanation
Indices: 24254886--24254928 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
24254876 TAATTTTTTT
24254886 TAAAAAATAAAATTTA-TA
1 TAAAAAATAAAATTTAGTA
**
24254904 -AAAATTTAAAATTTAGTA
1 TAAAAAATAAAATTTAGTA
24254922 TAAAAAA
1 TAAAAAA
24254929 AGGAAAAAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 3
0.73 0.15 0.12
Matches are distributed among these distances:
17 13 0.68
18 2 0.11
19 4 0.21
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAAAATAAAATTTAGTA
Found at i:24255880 original size:2 final size:2
Alignment explanation
Indices: 24255875--24255904 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24255865 CTTTTTTTTA
24255875 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
24255905 ATTTTTTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:24272010 original size:26 final size:26
Alignment explanation
Indices: 24271980--24272032 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
24271970 AACCCTCTTT
24271980 ATCAATCATCCTTGCTCTTATTTAAG
1 ATCAATCATCCTTGCTCTTATTTAAG
24272006 ATCAATCATCCTTGCTCTTATTTAAG
1 ATCAATCATCCTTGCTCTTATTTAAG
24272032 A
1 A
24272033 AATAAACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (26 bp):
ATCAATCATCCTTGCTCTTATTTAAG
Found at i:24273808 original size:36 final size:36
Alignment explanation
Indices: 24273759--24273877 Score: 163
Period size: 36 Copynumber: 3.4 Consensus size: 36
24273749 ACCAGAGCTC
* *
24273759 CTACTTATACTTCTCTGAGAAGATCTTACAGGACTT
1 CTACTAATGCTTCTCTGAGAAGATCTTACAGGACTT
24273795 CTACTAATGCTTCTCTGAGAAGATCTTACAGGACTT
1 CTACTAATGCTTCTCTGAGAAGATCTTACAGGACTT
* * *
24273831 CTGCTAATGCTTCTC--CG-AGATCTTGCAGGACTT
1 CTACTAATGCTTCTCTGAGAAGATCTTACAGGACTT
*
24273864 CTACTTATGCTTCT
1 CTACTAATGCTTCT
24273878 TTTTGAAAGT
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
33 27 0.36
34 1 0.01
36 48 0.63
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (36 bp):
CTACTAATGCTTCTCTGAGAAGATCTTACAGGACTT
Found at i:24273866 original size:69 final size:68
Alignment explanation
Indices: 24273779--24273907 Score: 179
Period size: 69 Copynumber: 1.9 Consensus size: 68
24273769 TTCTCTGAGA
*
24273779 AGATCTTACAGGACTTCTACTAATGCTTC-TCTGAGAAGATCTTACAGGACTTCTGCTAATGCTT
1 AGATCTTACAGGACTTCTACTAATGCTTCTTCTGA-AAG-TCTAACAGGACTTCTGCTAATGCTT
24273843 CTCCG
64 CTCCG
* * * *
24273848 AGATCTTGCAGGACTTCTACTTATGCTTCTTTTTGAAAGTCTAACAGGGCTTCTGCTAAT
1 AGATCTTACAGGACTTCTACTAATGCTTC-TTCTGAAAGTCTAACAGGACTTCTGCTAAT
24273908 TGATTTTCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
69 46 0.87
70 3 0.06
71 4 0.08
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (68 bp):
AGATCTTACAGGACTTCTACTAATGCTTCTTCTGAAAGTCTAACAGGACTTCTGCTAATGCTTCT
CCG
Found at i:24274089 original size:24 final size:23
Alignment explanation
Indices: 24274044--24274105 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
24274034 TCTCCCCCTC
* *
24274044 AAAGGGCTTCTGCTGATGCTTCT
1 AAAGGGCTTCTGCTCATACTTCT
*
24274067 AGAAGGGCTTCTGCTCCTACTTCT
1 A-AAGGGCTTCTGCTCATACTTCT
*
24274091 AACAGGGCTCCTGCT
1 AA-AGGGCTTCTGCT
24274106 TCCATTTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTCTGCTCATACTTCT
Found at i:24276044 original size:381 final size:376
Alignment explanation
Indices: 24275292--24276052 Score: 1170
Period size: 381 Copynumber: 2.0 Consensus size: 376
24275282 GAAAAAGGCA
* * * * *
24275292 TCAGAGAAAACCAAACGAGATGGATTAACAAAACTGATAGGTGTTGACTATTAGAAGGGGGAGAA
1 TCAGAGAAAACCAAACAAAATGGATTAACAAAACTAATAGGTGTAGACTATTAGAAGGGGGAAAA
* *
24275357 AACCATGATTCTTCCTCAACAAATCTTCACTAAGTACGTGGAGAAACACAAATGTAGCCACTTCA
66 AACCATGATACTTCCTCAACAAATCTTCACTAAGTACGTGGAGAAACACAAATGGAGCCACTTCA
* *
24275422 ACAAGGACATTGTGACCAACTGAATTTCAATGCATGTTAAGCATTCATTTACACATGCAACTCAT
131 ACAAGGACATTGTCACCAACTGAATTTCAA-GCATGTTAAGCATTCATTTACACACGCAACTCAT
* * *
24275487 ATTATGACTGAAGAAAATCCAATCCTAGACATTTATTTTAGTAATTTTCCAAAATGCAGGTTTTG
195 ATTATGACCGAAGAAAATCCAATCCCAGACAATTATTTTAGTAATTTTCCAAAATGCAGGTTTTG
* * *
24275552 TCAACAACCATTAGTATTCAGATAACAATAATAATTAATAAGAAAGGATAGAAATAAGAAAACAT
260 TCAACAACCATTAATATTCAAATAACAATAATAATTAATAAAAAAGGATAGAAATAAGAAAACAT
* *
24275617 TCTTATTTATTGCATGGGAGGCAAAGGAAACAGTATAAGGAGCAAACAAATT
325 TCTTATGTATTGCATGGGAGGCAAAGAAAACAGTATAAGGAGCAAACAAATT
24275669 TCAGAGAAAACCAAACAAAATGGATTAACAAAACTAATAGGTGTAGACTATTAGAA-GGGGAAAA
1 TCAGAGAAAACCAAACAAAATGGATTAACAAAACTAATAGGTGTAGACTATTAGAAGGGGGAAAA
*
24275733 AACCATGATACTTCCTCAACAAATCTTCACTAAGTACGTGGAGAAACACAAATGGAGCTACTTCA
66 AACCATGATACTTCCTCAACAAATCTTCACTAAGTACGTGGAGAAACACAAATGGAGCCACTTCA
* * **
24275798 ACGAGGACATTGTCACCAATTGAATTTC-A-CATGTTAAGCATTCATTTACATGCGCAACTCATA
131 ACAAGGACATTGTCACCAACTGAATTTCAAGCATGTTAAGCATTCATTTACACACGCAACTCATA
*
24275861 TTATGACCGAAGAAAATCCAATCCCAGACAATTATTTTAGTAATTTTCCAAGATGCAGGTTTTGT
196 TTATGACCGAAGAAAATCCAATCCCAGACAATTATTTTAGTAATTTTCCAAAATGCAGGTTTTG-
24275926 TTCTCAACAACCAACCATTAATATTCAAATAACAATAATAATTAA-AATAAAAGGATAGAAATAA
260 ---T---CAA-CAACCATTAATATTCAAATAACAATAATAATTAATAA-AAAAGGATAGAAATAA
* * *
24275990 GAAAACATTCTTATGTATTGTATGGGAGGCAAAGAAAACAGTATCAGGAGCAAACAAGTT
317 GAAAACATTCTTATGTATTGCATGGGAGGCAAAGAAAACAGTATAAGGAGCAAACAAATT
24276050 TCA
1 TCA
24276053 ACTTCATCTC
Statistics
Matches: 349, Mismatches: 26, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
373 91 0.26
375 1 0.00
376 94 0.27
377 53 0.15
380 5 0.01
381 105 0.30
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (376 bp):
TCAGAGAAAACCAAACAAAATGGATTAACAAAACTAATAGGTGTAGACTATTAGAAGGGGGAAAA
AACCATGATACTTCCTCAACAAATCTTCACTAAGTACGTGGAGAAACACAAATGGAGCCACTTCA
ACAAGGACATTGTCACCAACTGAATTTCAAGCATGTTAAGCATTCATTTACACACGCAACTCATA
TTATGACCGAAGAAAATCCAATCCCAGACAATTATTTTAGTAATTTTCCAAAATGCAGGTTTTGT
CAACAACCATTAATATTCAAATAACAATAATAATTAATAAAAAAGGATAGAAATAAGAAAACATT
CTTATGTATTGCATGGGAGGCAAAGAAAACAGTATAAGGAGCAAACAAATT
Found at i:24277834 original size:43 final size:43
Alignment explanation
Indices: 24277773--24277861 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
24277763 ATTTTGACTG
*
24277773 CTTATGGAGAGTACAAGGCTATATACATAAGCATGTCTGAGCA
1 CTTATGGAGAGTACAAGGCTACATACATAAGCATGTCTGAGCA
* *
24277816 CTTATGGAGTGTACAAGGCTACATGCATAAGCATGTCTGAGCA
1 CTTATGGAGAGTACAAGGCTACATACATAAGCATGTCTGAGCA
24277859 CTT
1 CTT
24277862 TCATCACATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
CTTATGGAGAGTACAAGGCTACATACATAAGCATGTCTGAGCA
Found at i:24285924 original size:63 final size:63
Alignment explanation
Indices: 24285857--24285991 Score: 175
Period size: 63 Copynumber: 2.1 Consensus size: 63
24285847 TAAAAATGTC
*
24285857 TTAAATAAT-CTCTTAAAATTTTTTGAAAAGCATTATTTAAGATTTTTTTTTA-TCAAAAACACT
1 TTAAATAATAC-CTTAAAATTTTTTGAAAAGCATTATTTAAGA-TTTTTTTTAGTAAAAAACACT
** ** * *
24285920 TTAAATAATACCTTTCAATTTTTTGAACCGTATTATTTAAGATTTTTTTTAGTAAAAAATACT
1 TTAAATAATACCTTAAAATTTTTTGAAAAGCATTATTTAAGATTTTTTTTAGTAAAAAACACT
24285983 TTAAATAAT
1 TTAAATAAT
24285992 TCATTTCATT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
62 9 0.14
63 53 0.84
64 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (63 bp):
TTAAATAATACCTTAAAATTTTTTGAAAAGCATTATTTAAGATTTTTTTTAGTAAAAAACACT
Found at i:24289506 original size:22 final size:22
Alignment explanation
Indices: 24289468--24289515 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
24289458 TTCATGTTTT
24289468 TAAATATTAAAAAATAAAAAAA
1 TAAATATTAAAAAATAAAAAAA
*
24289490 TAAAT-TTAAATATATAAAAAAA
1 TAAATATTAAA-AAATAAAAAAA
24289512 TAAA
1 TAAA
24289516 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAATATTAAAAAATAAAAAAA
Found at i:24293798 original size:84 final size:84
Alignment explanation
Indices: 24293686--24293840 Score: 274
Period size: 84 Copynumber: 1.8 Consensus size: 84
24293676 GAGATTTGTC
* *
24293686 GTAACGGTTTTGGGACCGTCAGATGTAAAACATGATGATGTGTTTTAAAATTAAAAAAAATAAAA
1 GTAACGGTTTTGGGACCGTCAGACGTAAAACATGATGATGTGTTTTAAAATCAAAAAAAATAAAA
24293751 AAGAGAAAGTCGTCAAGTT
66 AAGAGAAAGTCGTCAAGTT
* *
24293770 GTAACGGTTTTGGGACCGTCAGACGTAAAACATGATGATGTGTTTTAAAATCGAGAAAAATAAAA
1 GTAACGGTTTTGGGACCGTCAGACGTAAAACATGATGATGTGTTTTAAAATCAAAAAAAATAAAA
24293835 AAGAGA
66 AAGAGA
24293841 GTCGTTATCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.43, C:0.09, G:0.23, T:0.26
Consensus pattern (84 bp):
GTAACGGTTTTGGGACCGTCAGACGTAAAACATGATGATGTGTTTTAAAATCAAAAAAAATAAAA
AAGAGAAAGTCGTCAAGTT
Found at i:24295070 original size:16 final size:17
Alignment explanation
Indices: 24295040--24295071 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24295030 ATTTTAATAT
24295040 ATTTTTAATTATTATTC
1 ATTTTTAATTATTATTC
24295057 ATTTTTAATT-TTATT
1 ATTTTTAATTATTATT
24295072 ACTATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTAATTATTATTC
Found at i:24295151 original size:24 final size:25
Alignment explanation
Indices: 24295124--24295183 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 25
24295114 TTTATCATGC
*
24295124 ATAAATATAAAAAAT-ATATTTAAA
1 ATAAATATAAAAAATAATATATAAA
*
24295148 ATAACA-A-AAATAATAATATATAAA
1 ATAA-ATATAAAAAATAATATATAAA
24295172 A-AAAT-TAAAAAA
1 ATAAATATAAAAAA
24295184 AAAATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
22 1 0.03
23 13 0.45
24 14 0.48
25 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (25 bp):
ATAAATATAAAAAATAATATATAAA
Found at i:24295854 original size:13 final size:12
Alignment explanation
Indices: 24295832--24295865 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
24295822 AATGACTGTG
24295832 TTATTTTTTTGT
1 TTATTTTTTTGT
24295844 TTATGTTTTTTGT
1 TTAT-TTTTTTGT
24295857 TT-TTTTTTT
1 TTATTTTTTT
24295866 TTTCGGTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 5 0.24
13 10 0.48
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (12 bp):
TTATTTTTTTGT
Found at i:24296303 original size:14 final size:15
Alignment explanation
Indices: 24296284--24296315 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
24296274 AATATATATT
24296284 TTATTATTATT-GTA
1 TTATTATTATTAGTA
24296298 TTATTATTATTAGTA
1 TTATTATTATTAGTA
24296313 TTA
1 TTA
24296316 ATATACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TTATTATTATTAGTA
Found at i:24296455 original size:4 final size:4
Alignment explanation
Indices: 24296448--24296473 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
24296438 ATTATGATCT
24296448 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
24296474 GAAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:24296660 original size:109 final size:109
Alignment explanation
Indices: 24296512--24296721 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 109
24296502 ATGACGCCGC
* * **
24296512 AAGTCGAAAAATAATGAATCCAGTGAGATAACATCGCGAATCGATTTTATGCCCGGAGGTCTTAC
1 AAGTCGAAAAATAAAGAATCCAGTCAGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAC
*
24296577 AAATCATG-CCTGGAGGTCTTATAGAATTGATTGAGATAACACTAT
66 AAATCATGTCC-GGAGGTCTTACAGAATTGATT-AGATAACACTAT
* *
24296622 AAGTC-AAAAATAAAGAATCGA-TCAGGATAACA-CTGCGAATCGAAATTATGTCCGGAGGTCTT
1 AAGTCGAAAAATAAAGAATCCAGTCA-GATAACATC-GCGAATCGAAATTATGCCCGGAGGTCTT
*
24296684 AGAAATCATGTCCGGAGGTCTTACAGAATTGATTAGAT
64 ACAAATCATGTCCGGAGGTCTTACAGAATTGATTAGAT
24296722 GTCTTAAAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
108 7 0.08
109 75 0.84
110 7 0.08
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (109 bp):
AAGTCGAAAAATAAAGAATCCAGTCAGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAC
AAATCATGTCCGGAGGTCTTACAGAATTGATTAGATAACACTAT
Found at i:24296748 original size:22 final size:22
Alignment explanation
Indices: 24296664--24296749 Score: 88
Period size: 22 Copynumber: 4.0 Consensus size: 22
24296654 CTGCGAATCG
*
24296664 AAATTATGTCCGGAGGTCTTAG
1 AAATTATGTCCGGAGGTCTTAA
*
24296686 AAATCATGTCCGGAGGTCTTACA
1 AAATTATGTCCGGAGGTCTTA-A
* * *
24296709 GAATTGAT-T--AGATGTCTTAA
1 AAATT-ATGTCCGGAGGTCTTAA
24296729 AAATTATGTCCGGAGGTCTTA
1 AAATTATGTCCGGAGGTCTTA
24296750 CAGAATTGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
19 2 0.04
20 6 0.12
21 8 0.16
22 28 0.56
23 4 0.08
24 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (22 bp):
AAATTATGTCCGGAGGTCTTAA
Found at i:24296768 original size:152 final size:152
Alignment explanation
Indices: 24296570--24296869 Score: 444
Period size: 152 Copynumber: 2.0 Consensus size: 152
24296560 ATGCCCGGAG
* * * *
24296570 GTCTTACAAATCATGCCTGGAGGTCTTATAGAATTGATTGAGATAACACTATAAGTCAAAAATAA
1 GTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGAGATAACACCATAAGTCAAAAATAA
* *
24296635 AGAATCGATC-AGGATAACACTGCGAATCGAAA-TTATGTCCGGAGGTCTTAGAAATCATGTCCG
66 AGAATCGATCGA-GATAACACCGCGAATC-AAATTTATGCCCGGAGGTCTTAGAAATCATGTCCG
24296698 GAGGTCTTACAGAATTGATTAGAT
129 GAGGTCTTACAGAATTGATTAGAT
* * * *
24296722 GTCTTAAAAATTATGTCC-GGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAATTA
1 GTCTTAAAAATCATG-CCTGGAGGTCTTACAGAATTGACTGAGATAACACCATAAGTCAAAAATA
* *
24296786 TAGAATTGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATGTCCGG
65 AAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATGTCCGG
24296851 AGGTCTTACAGAATTGATT
130 AGGTCTTACAGAATTGATT
24296870 GGAATAACAC
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
151 3 0.02
152 127 0.95
153 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (152 bp):
GTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGAGATAACACCATAAGTCAAAAATAA
AGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATGTCCGGA
GGTCTTACAGAATTGATTAGAT
Found at i:24296858 original size:109 final size:110
Alignment explanation
Indices: 24296722--24296974 Score: 348
Period size: 110 Copynumber: 2.3 Consensus size: 110
24296712 TTGATTAGAT
* * * **
24296722 GTCTTAAAAATTATGTCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTC-AAA-ATT
1 GTCTTAGAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCACAAGTCGAAAGA-T
* *
24296785 ATAGAATTGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAG
65 AAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAG
* *
24296831 GTCTTAGAAATCATGTCCGGAGGTCTTACAGAATTGATTGGAATAACACTACAAGTCGAAAGATA
1 GTCTTAGAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCACAAGTCGAAAGATA
* ** *
24296896 AAGAATCGATCGGGATAACACCGCGAATTGAATTTATGTCCGGAG
66 AAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAG
* *
24296941 GTCTTAGAAATCATGCCCGGAGATCTTACAGAAT
1 GTCTTAGAAATCATGTCCGGAGGTCTTACAGAAT
24296975 CATGTTCGGA
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
109 50 0.39
110 76 0.60
111 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (110 bp):
GTCTTAGAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCACAAGTCGAAAGATA
AAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAG
Found at i:24296984 original size:23 final size:23
Alignment explanation
Indices: 24296931--24296997 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
24296921 AATTGAATTT
*
24296931 ATGTCCGGAGGTCTTAGA-AATC
1 ATGTCCGGAGGTCTTACAGAATC
* *
24296953 ATGCCCGGAGATCTTACAGAATC
1 ATGTCCGGAGGTCTTACAGAATC
*
24296976 ATGTTCGGAGGTCTTACAGAAT
1 ATGTCCGGAGGTCTTACAGAAT
24296998 TGACTGGGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 15 0.39
23 23 0.61
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (23 bp):
ATGTCCGGAGGTCTTACAGAATC
Found at i:24297046 original size:132 final size:131
Alignment explanation
Indices: 24296821--24297078 Score: 351
Period size: 132 Copynumber: 2.0 Consensus size: 131
24296811 AATCAAATTT
* * *
24296821 ATGCCCGGAGGTCTTAGAAATCATGTCCGGAGGTCTTACAGAATTGATTGGAATAACACTACAAG
1 ATGCCCGGAGATCTTACAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACTA-AAG
* ** *
24296886 TCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATTGAATTTATGTCCGGAGGTCTTAGAAA
65 TCGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAATTTATGCCCGGAGGTCTTAGAAA
24296951 TC
130 TC
* *
24296953 ATGCCCGGAGATCTTACAGAATCATGTTCGGAGGTCTTACAGAATTGACTGGGATAACATCGT-A
1 ATGCCCGGAGATCTTACA-AATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACA-C-TAA
* *
24297017 AGTC-AAA-ATTATAGAATTGATCGGGATAACACCACGAATCAAATTTATGCCCGGAGGTCTTA
63 AGTCGAAAGA-TAAAGAATCGATCGGGATAACACCACGAATCAAATTTATGCCCGGAGGTCTTA
24297079 CAGAATTGAT
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
131 1 0.01
132 66 0.59
133 42 0.38
134 1 0.01
135 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (131 bp):
ATGCCCGGAGATCTTACAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACTAAAGT
CGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAATTTATGCCCGGAGGTCTTAGAAAT
C
Found at i:24297160 original size:88 final size:86
Alignment explanation
Indices: 24296981--24297240 Score: 290
Period size: 88 Copynumber: 3.0 Consensus size: 86
24296971 GAATCATGTT
* * *
24296981 CGGAGGTCTTACAGAATTGACTGGGATAACATCGTAAGTCAAAATTATAGAATTGATCGGGATAA
1 CGGAGGTCTTACAGAATTGACTGGAATAACATCG-AAGTCAAAATTAAAGAATCGATCGGGATAA
*
24297046 CACCACGAATCAAATTTATGCC
65 CACCACAAATCAAATTTATGCC
* *
24297068 CGGAGGTCTTACAGAATTGATTGGAATAACACTAC-AAGTCGAAAGA-TAAAGAATCGATTGGGA
1 CGGAGGTCTTACAGAATTGACTGGAATAACA-T-CGAAGTC-AAA-ATTAAAGAATCGATCGGGA
** **
24297131 TAACACCGTAAATTGAATTTATGCC
62 TAACACCACAAATCAAATTTATGCC
* * * * *
24297156 CGGAGGTCTTACAGAATTGACTGGGACAACACCGTAAGTCAAAATTATAGAATTGATCGGGATAA
1 CGGAGGTCTTACAGAATTGACTGGAATAACATCG-AAGTCAAAATTAAAGAATCGATCGGGATAA
* * *
24297221 CATCGCGAATCAAATTTATG
65 CACCACAAATCAAATTTATG
24297241 TCCAAATGTC
Statistics
Matches: 144, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
86 2 0.01
87 69 0.48
88 71 0.49
89 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (86 bp):
CGGAGGTCTTACAGAATTGACTGGAATAACATCGAAGTCAAAATTAAAGAATCGATCGGGATAAC
ACCACAAATCAAATTTATGCC
Found at i:24297350 original size:110 final size:109
Alignment explanation
Indices: 24297151--24297391 Score: 304
Period size: 110 Copynumber: 2.2 Consensus size: 109
24297141 AATTGAATTT
* ** * * *
24297151 ATGCCCGGAGGTCTTACAGAATTGACTGGGACAACACCGTAAGTCAAAATTATAGAATTGATCGG
1 ATGCCCGGAGGTCTTACAGAATTGACTGGAACAACACCACAAGTCAAAATTAAAGAATCGATCGA
* * * *
24297216 GATAACATCGCGAATCAAATTTATGTCCAAATGTCTTAGAAATC
66 AATAACACCGCGAATCAAATTTATGTCCAAAGGTCTTAAAAATC
* * *
24297260 ATGTCCGGAGGTCTTACAGAATTGATTGGAATAACACCACAAGTCGAAAGA-TAAAGAATCGATC
1 ATGCCCGGAGGTCTTACAGAATTGACTGGAACAACACCACAAGTC-AAA-ATTAAAGAATCGATC
* **
24297324 GAAATAACACCGCGAATCGAATTTATGTCCGGAGGTCTTAAAAATC
64 GAAATAACACCGCGAATCAAATTTATGTCCAAAGGTCTTAAAAATC
*
24297370 ATGCCCGGAGATCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
24297392 AATGCTCGGA
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
109 39 0.35
110 72 0.64
111 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (109 bp):
ATGCCCGGAGGTCTTACAGAATTGACTGGAACAACACCACAAGTCAAAATTAAAGAATCGATCGA
AATAACACCGCGAATCAAATTTATGTCCAAAGGTCTTAAAAATC
Found at i:24297401 original size:23 final size:23
Alignment explanation
Indices: 24297352--24297414 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
24297342 GAATTTATGT
* *
24297352 CCGGAGGTCTTA-AAAATCATGC
1 CCGGAGGTCTTACAGAATAATGC
*
24297374 CCGGAGATCTTACAGAATAATGC
1 CCGGAGGTCTTACAGAATAATGC
*
24297397 TCGGAGGTCTTACAGAAT
1 CCGGAGGTCTTACAGAAT
24297415 TGATTAGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 11 0.31
23 24 0.69
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (23 bp):
CCGGAGGTCTTACAGAATAATGC
Found at i:24297935 original size:43 final size:41
Alignment explanation
Indices: 24297853--24297935 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 41
24297843 ATGCAAATGC
* * * *
24297853 AAGTGATGCAAATGCGAATGTCTTTCTTGTAGTACAGATAT
1 AAGTGATGCAAATGCAAATATCTTTCATGTAGCACAGATAT
24297894 AAGTGATGCAAATGCAAATATCCCTTTCATG-ATGCACAGATA
1 AAGTGATGCAAATGCAAATAT--CTTTCATGTA-GCACAGATA
24297936 AGCGATGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
41 19 0.54
42 1 0.03
43 15 0.43
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (41 bp):
AAGTGATGCAAATGCAAATATCTTTCATGTAGCACAGATAT
Found at i:24298188 original size:33 final size:33
Alignment explanation
Indices: 24298122--24298696 Score: 592
Period size: 33 Copynumber: 17.5 Consensus size: 33
24298112 AAATGTCAGC
* * *
24298122 TAAACTGGACTTAAAT-ATCATTGATGGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* ** *
24298154 TAACCTGGGCTTAAATCTTCATTGTTGGCTAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* * ** *
24298187 TAAACTGGGTTTAAAACTTCATTGTTGGTCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* * * *
24298220 TAAATTGGGCTTAAAACCTCATTGATGGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* * * *
24298253 TAAGCTAGGCTTAAAGCTTCATTAATGGTCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* *
24298286 TAAACTGGGCTTAAAGCTTCATTAATAGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* *
24298319 TAAACTGGGTTTAAATCTTCATTAATAGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* * *
24298352 TAAACTGAGTTTAAAAT-TTCATTAATGGTCAGA
1 TAAACTGGGCTT-AAATCTTCATTAATGGCCAGA
** *
24298385 TAAACTGGGCTTAAATCTTCATTTAA-GGTTAAA
1 TAAACTGGGCTTAAATCTTCA-TTAATGGCCAGA
* *
24298418 TAAACTGGGCTTAAAGCTTCATTGATGGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* * * *
24298451 TAAGCTGGGCTTAAAGCTTCATTAATGGTCAAA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
*
24298484 TAAACTGGGCTTAAAGT-TTCATTGA-GAGCCAGA
1 TAAACTGGGCTTAAA-TCTTCATTAATG-GCCAGA
* *
24298517 TAAATTGGGCTTAAATCTTCATTTGA-GGCCAGA
1 TAAACTGGGCTTAAATCTTCA-TTAATGGCCAGA
* *
24298550 TAAACTGGGCTTAAAGCCTCATTAATGGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* *
24298583 TAAGCTGGGCTTAAAGCTTCATTAATGGCCAGA
1 TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
* *
24298616 TAAACTGGGCTTAAAGT-TTCATTGA-GAGCCAAA
1 TAAACTGGGCTTAAA-TCTTCATTAATG-GCCAGA
* *
24298649 TAAATTGGGCTTAAATCTTCATTTGA-GGCCAGA
1 TAAACTGGGCTTAAATCTTCA-TTAATGGCCAGA
24298682 TAAACTGGGCTTAAA
1 TAAACTGGGCTTAAA
24298697 GCTTTTTTTT
Statistics
Matches: 466, Mismatches: 63, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
32 28 0.06
33 420 0.90
34 18 0.04
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (33 bp):
TAAACTGGGCTTAAATCTTCATTAATGGCCAGA
Done.