Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 139 of 160
Found at i:26083379 original size:2 final size:2
Alignment explanation
Indices: 26083372--26083409 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
26083362 GAAAGCTGGC
26083372 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26083410 AAGACACGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26083638 original size:3 final size:3
Alignment explanation
Indices: 26083630--26083658 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26083620 ACATTTTCAA
26083630 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26083659 GTTGTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:26086621 original size:2 final size:2
Alignment explanation
Indices: 26086614--26086650 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
26086604 AACATATTTC
*
26086614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26086651 GTGAGGGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:26090624 original size:15 final size:15
Alignment explanation
Indices: 26090606--26090645 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
26090596 GTTTTTAGAA
*
26090606 TTTTTGATTTTAAGG
1 TTTTGGATTTTAAGG
*
26090621 TTTTGGATTTTAGGG
1 TTTTGGATTTTAAGG
*
26090636 TTTAGGATTT
1 TTTTGGATTT
26090646 AGGATTTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.57
Consensus pattern (15 bp):
TTTTGGATTTTAAGG
Found at i:26090716 original size:28 final size:28
Alignment explanation
Indices: 26090685--26090779 Score: 84
Period size: 28 Copynumber: 3.4 Consensus size: 28
26090675 AAATTTTGGG
* * * *
26090685 GTTTAGGTTTTTGATTTTAGTGTTTAGA
1 GTTTAGGGTTTTGATTTCAGGGTTTAAA
*
26090713 GTTTGGGGTTTTGATTTCAGGGTTTAAA
1 GTTTAGGGTTTTGATTTCAGGGTTTAAA
* * *
26090741 GTTT-GGAGTTTTGGTTTTAGGGTTTCAA
1 GTTTAGG-GTTTTGATTTCAGGGTTTAAA
* *
26090769 TTTTAGAGTTT
1 GTTTAGGGTTT
26090780 GAATGTTTAG
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.04
28 52 0.95
29 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.53
Consensus pattern (28 bp):
GTTTAGGGTTTTGATTTCAGGGTTTAAA
Found at i:26090765 original size:14 final size:14
Alignment explanation
Indices: 26090607--26090765 Score: 56
Period size: 14 Copynumber: 11.2 Consensus size: 14
26090597 TTTTTAGAAT
* *
26090607 TTTTGATTTTAAGG
1 TTTTGGTTTTAGGG
26090621 TTTTGGATTTTAGGG
1 TTTTGG-TTTTAGGG
* * *
26090636 TTTAGGATTTAGGA
1 TTTTGGTTTTAGGG
**
26090650 TTTTGGGATTAGGG
1 TTTTGGTTTTAGGG
* **
26090664 TTTTGAGTTTCA-AA
1 TTTTG-GTTTTAGGG
* *
26090678 TTTTGGGGTTTAGGT
1 TTTT-GGTTTTAGGG
* *
26090693 TTTTGATTTTAGTG
1 TTTTGGTTTTAGGG
* *
26090707 TTTAGAG-TTTGGGG
1 TTTTG-GTTTTAGGG
* *
26090721 TTTTGATTTCAGGG
1 TTTTGGTTTTAGGG
**
26090735 TTTAAAG-TTT-GGAG
1 TTT-TGGTTTTAGG-G
26090749 TTTTGGTTTTAGGG
1 TTTTGGTTTTAGGG
26090763 TTT
1 TTT
26090766 CAATTTTAGA
Statistics
Matches: 99, Mismatches: 36, Indels: 20
0.64 0.23 0.13
Matches are distributed among these distances:
13 3 0.03
14 74 0.75
15 22 0.22
ACGTcount: A:0.17, C:0.01, G:0.30, T:0.52
Consensus pattern (14 bp):
TTTTGGTTTTAGGG
Found at i:26090790 original size:15 final size:14
Alignment explanation
Indices: 26090755--26090794 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
26090745 GGAGTTTTGG
*
26090755 TTTTAGGGTTTCAA
1 TTTTAGAGTTTCAA
*
26090769 TTTTAGAGTTTGAA
1 TTTTAGAGTTTCAA
26090783 TGTTTAGAGTTT
1 T-TTTAGAGTTT
26090795 TGATTTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.53
Consensus pattern (14 bp):
TTTTAGAGTTTCAA
Found at i:26090848 original size:29 final size:29
Alignment explanation
Indices: 26090815--26090904 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
26090805 ACTTGGACGA
* *
26090815 TTTAGGGTTTAGAGGGTTTGGGGATTTGT
1 TTTAGGGTTTGGAGGGTTTAGGGATTTGT
* * **
26090844 TTTAGGATTTGGAAGGTTTAGAAATTTGT
1 TTTAGGGTTTGGAGGGTTTAGGGATTTGT
*
26090873 TTTAAGGTTTGGAGGGTTTAGGG-TTTAGT
1 TTTAGGGTTTGGAGGGTTTAGGGATTT-GT
26090902 TTT
1 TTT
26090905 GAAATTTTGA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 3 0.06
29 46 0.94
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (29 bp):
TTTAGGGTTTGGAGGGTTTAGGGATTTGT
Found at i:26090925 original size:43 final size:41
Alignment explanation
Indices: 26090859--26091027 Score: 128
Period size: 43 Copynumber: 4.3 Consensus size: 41
26090849 GATTTGGAAG
* * *
26090859 GTTTAGAAATTTGTTTTAAGGTTTGGAGGGTTTAGGGTTTA
1 GTTTTGAAATTTGTTTTAAGGTTTGGAGGATTTAAGGTTTA
*
26090900 GTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTAAGGTTTA
1 GTTTTGAAA-TTTG-TTTTAAGGTTTGGAGGATTTAAGGTTTA
* * *
26090943 G---T----TTTG-----AGGTTTGAAGGGTTTAGGGTTTA
1 GTTTTGAAATTTGTTTTAAGGTTTGGAGGATTTAAGGTTTA
* *
26090972 GTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTATGGTTTA
1 GTTTTGAAA-TTTG-TTTTAAGGTTTGGAGGATTTAAGGTTTA
*
26091015 GTTTTGAGATTTG
1 GTTTTGAAATTTG
26091028 GAGGGTTTAG
Statistics
Matches: 99, Mismatches: 13, Indels: 31
0.69 0.09 0.22
Matches are distributed among these distances:
29 20 0.20
32 1 0.01
35 4 0.04
37 4 0.04
40 1 0.01
41 8 0.08
42 8 0.08
43 53 0.54
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.49
Consensus pattern (41 bp):
GTTTTGAAATTTGTTTTAAGGTTTGGAGGATTTAAGGTTTA
Found at i:26090946 original size:21 final size:22
Alignment explanation
Indices: 26090922--26090965 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
26090912 TGATTTTAGG
26090922 GTTTGGAGGATTT-AA-GGTTTA
1 GTTTGGAGG-TTTGAAGGGTTTA
*
26090943 GTTTTGAGGTTTGAAGGGTTTA
1 GTTTGGAGGTTTGAAGGGTTTA
26090965 G
1 G
26090966 GGTTTAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 10 0.50
22 7 0.35
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (22 bp):
GTTTGGAGGTTTGAAGGGTTTA
Found at i:26090953 original size:72 final size:72
Alignment explanation
Indices: 26090871--26091042 Score: 308
Period size: 72 Copynumber: 2.4 Consensus size: 72
26090861 TTAGAAATTT
*
26090871 GTTTTAAGGTTTGGAGGGTTTAGGGTTTAGTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTA
1 GTTTTGAGGTTTGGAGGGTTTAGGGTTTAGTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTA
26090936 AGGTTTA
66 AGGTTTA
*
26090943 GTTTTGAGGTTTGAAGGGTTTAGGGTTTAGTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTA
1 GTTTTGAGGTTTGGAGGGTTTAGGGTTTAGTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTA
*
26091008 TGGTTTA
66 AGGTTTA
*
26091015 GTTTTGAGATTTGGAGGGTTTAGGGTTT
1 GTTTTGAGGTTTGGAGGGTTTAGGGTTT
26091043 TAGGGTTTAG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 95 1.00
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (72 bp):
GTTTTGAGGTTTGGAGGGTTTAGGGTTTAGTTTTGAAATTTTGATTTTAGGGTTTGGAGGATTTA
AGGTTTA
Found at i:26090964 original size:29 final size:29
Alignment explanation
Indices: 26090921--26090978 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
26090911 TTGATTTTAG
*
26090921 GGTTTGGAGGATTTAAGGTTTAGTTTTGA
1 GGTTTGAAGGATTTAAGGTTTAGTTTTGA
* *
26090950 GGTTTGAAGGGTTTAGGGTTTAGTTTTGA
1 GGTTTGAAGGATTTAAGGTTTAGTTTTGA
26090979 AATTTTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (29 bp):
GGTTTGAAGGATTTAAGGTTTAGTTTTGA
Found at i:26092366 original size:34 final size:34
Alignment explanation
Indices: 26092327--26092400 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
26092317 TTTTAGGTTC
* *
26092327 TCTGGTTTAGGAGAGTAGGGTG-CTATGTGGGATT
1 TCTGGTTTAGGAGAGCAGGGTGTCTATGTGGG-GT
* *
26092361 TCTGGTTTGGGAGAGCAGGGTGTCTGTGTGGGGT
1 TCTGGTTTAGGAGAGCAGGGTGTCTATGTGGGGT
26092395 TCTGGT
1 TCTGGT
26092401 GTGTTCTAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 27 0.77
35 8 0.23
ACGTcount: A:0.12, C:0.08, G:0.45, T:0.35
Consensus pattern (34 bp):
TCTGGTTTAGGAGAGCAGGGTGTCTATGTGGGGT
Found at i:26092638 original size:19 final size:18
Alignment explanation
Indices: 26092611--26092657 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
26092601 TACCCCTGTC
26092611 TTTTTTTATTCATTTTTA
1 TTTTTTTATTCATTTTTA
**
26092629 TTTTTATTATTTGTTTTTA
1 TTTTT-TTATTCATTTTTA
26092648 TTTTTTTATT
1 TTTTTTTATT
26092658 GATTATGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTATTCATTTTTA
Found at i:26092648 original size:10 final size:9
Alignment explanation
Indices: 26092611--26092654 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
26092601 TACCCCTGTC
26092611 TTTTTTTAT
1 TTTTTTTAT
*
26092620 TCATTTTTAT
1 T-TTTTTTAT
*
26092630 TTTTATTAT
1 TTTTTTTAT
26092639 TTGTTTTTAT
1 TT-TTTTTAT
26092649 TTTTTT
1 TTTTTT
26092655 ATTGATTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:26094870 original size:18 final size:18
Alignment explanation
Indices: 26094837--26094891 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
26094827 ATTTTTTACA
*
26094837 TAATTTATATAATAATAT
1 TAATTTATATATTAATAT
*
26094855 TAATTTATCTATTAATA-
1 TAATTTATATATTAATAT
* *
26094872 -AATATATTTATTAAT-T
1 TAATTTATATATTAATAT
26094888 TAAT
1 TAAT
26094892 AATTTACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 13 0.42
17 3 0.10
18 15 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTTATATATTAATAT
Found at i:26098201 original size:14 final size:15
Alignment explanation
Indices: 26098174--26098202 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26098164 TATTTGTTTA
26098174 AATTTGTTTGATTAT
1 AATTTGTTTGATTAT
26098189 AATTTGTTT-ATTAT
1 AATTTGTTTGATTAT
26098203 TCATGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (15 bp):
AATTTGTTTGATTAT
Found at i:26099589 original size:13 final size:12
Alignment explanation
Indices: 26099554--26099590 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
26099544 ATTTATTGAT
26099554 TTAAATTTTTTA
1 TTAAATTTTTTA
*
26099566 TTAAAGTTTTTA
1 TTAAATTTTTTA
26099578 TTAAATTATTTTA
1 TTAAATT-TTTTA
26099591 AACAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTAAATTTTTTA
Found at i:26100398 original size:21 final size:21
Alignment explanation
Indices: 26100372--26100420 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
26100362 TCCTTTTGGG
26100372 CAACTCCAGAAGCATCAGCTT
1 CAACTCCAGAAGCATCAGCTT
26100393 CAACTCCAGAAGCATCAGCTT
1 CAACTCCAGAAGCATCAGCTT
26100414 CAACTCC
1 CAACTCC
26100421 GTCCTGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.37, G:0.12, T:0.18
Consensus pattern (21 bp):
CAACTCCAGAAGCATCAGCTT
Found at i:26104165 original size:22 final size:22
Alignment explanation
Indices: 26104140--26104200 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
26104130 AAATTTGATT
26104140 ATTTATTATCAATTAATACTAA
1 ATTTATTATCAATTAATACTAA
* *
26104162 ATTT-TTATCACATTTATATTAA
1 ATTTATTATCA-ATTAATACTAA
* *
26104184 ATATATTCATAAATTAA
1 ATTTATT-ATCAATTAA
26104201 AGAAGATCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 6 0.19
22 16 0.52
23 6 0.19
24 3 0.10
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATTATCAATTAATACTAA
Found at i:26104348 original size:18 final size:17
Alignment explanation
Indices: 26104316--26104351 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
26104306 AAAATTAATA
26104316 TTTTAATATTCTAAAAT
1 TTTTAATATTCTAAAAT
*
26104333 TTTTATATATTTTAAAAT
1 TTTTA-ATATTCTAAAAT
26104351 T
1 T
26104352 AAAATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAATATTCTAAAAT
Found at i:26107051 original size:12 final size:12
Alignment explanation
Indices: 26107015--26107052 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26107005 TTAAAATTCT
*
26107015 AATATTTATTAA
1 AATATTTATAAA
*
26107027 AATATTTTTAAA
1 AATATTTATAAA
26107039 AATATTTA-AAA
1 AATATTTATAAA
26107050 AAT
1 AAT
26107053 CAAACATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AATATTTATAAA
Found at i:26109017 original size:2 final size:2
Alignment explanation
Indices: 26109012--26109037 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26109002 GGAAAGTGGA
26109012 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26109038 CTGAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26117039 original size:2 final size:2
Alignment explanation
Indices: 26117032--26117070 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
26117022 AAATCTAGAA
26117032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26117071 CTCTTAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26117869 original size:20 final size:20
Alignment explanation
Indices: 26117842--26117889 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
26117832 AAATCAAAAA
26117842 TCGGTTTGAAATTTTAGTGT
1 TCGGTTTGAAATTTTAGTGT
*
26117862 TTGGTTTGAAATTTTAGTGT
1 TCGGTTTGAAATTTTAGTGT
26117882 TCGGTTTG
1 TCGGTTTG
26117890 GATCAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.04, G:0.27, T:0.52
Consensus pattern (20 bp):
TCGGTTTGAAATTTTAGTGT
Found at i:26118029 original size:16 final size:18
Alignment explanation
Indices: 26117998--26118031 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
26117988 TATCGAACTA
26117998 AATTGAATTATATATATT
1 AATTGAATTATATATATT
26118016 AATT-AATT-TATATATT
1 AATTGAATTATATATATT
26118032 TTTTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
AATTGAATTATATATATT
Found at i:26123349 original size:2 final size:2
Alignment explanation
Indices: 26123342--26123366 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26123332 GGAATATTAC
26123342 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26123367 TTGAAATTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26127064 original size:2 final size:2
Alignment explanation
Indices: 26127057--26127088 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26127047 TATTGACCAA
26127057 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26127089 GTTAACTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26131695 original size:2 final size:2
Alignment explanation
Indices: 26131688--26131713 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26131678 CACATTCGTG
26131688 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
26131714 TATATATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:26133592 original size:34 final size:35
Alignment explanation
Indices: 26133544--26133617 Score: 123
Period size: 34 Copynumber: 2.1 Consensus size: 35
26133534 TAAAAGTTTT
* *
26133544 TCCATACATTTGGAGGGTCGGGTCACCATACCATG
1 TCCATACATTTGGAGGGTAGGGCCACCATACCATG
26133579 TCCA-ACATTTGGAGGGTAGGGCCACCATACCATG
1 TCCATACATTTGGAGGGTAGGGCCACCATACCATG
26133613 TCCAT
1 TCCAT
26133618 GGGATGTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 32 0.89
35 4 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (35 bp):
TCCATACATTTGGAGGGTAGGGCCACCATACCATG
Found at i:26135458 original size:22 final size:23
Alignment explanation
Indices: 26135412--26135455 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
26135402 TTTTAGTTGA
26135412 ATGATGTAATTTATAAAAAAAAT
1 ATGATGTAATTTATAAAAAAAAT
26135435 ATGATGTAATTTATAAAAAAA
1 ATGATGTAATTTATAAAAAAA
26135456 TATTTACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (23 bp):
ATGATGTAATTTATAAAAAAAAT
Found at i:26135996 original size:294 final size:293
Alignment explanation
Indices: 26135466--26135997 Score: 771
Period size: 294 Copynumber: 1.8 Consensus size: 293
26135456 TATTTACTTA
* *
26135466 GATTTATTTAAACAAATTCGATTACAAATACTTGATGGAATGCTATTTTAAAAATTTTGGTAATT
1 GATTTATTTAAACAAATTCGATTACAAATACTTGAAGGAATGCTATTTTAAAAATTTTGGAAATT
* * *
26135531 GAATTTTATTCATCCATTTTTAATCTTTTATGGGTATAATTAAAATAAAATAAAAATTTATAATC
66 GAATTTTATTCATACATTTTTAATATTTTATGGGTATAATTAAAAGAAAATAAAAATTTATAATC
* ** * *
26135596 TTAATTTCATATAATAAAATTTGAGGGTTTGTTTGTATTTTTAAGTAAACTTCTAAGATTTATTT
131 TTAATTTCATACAATAAAATTTGAGAATTTGTTTATATTTTTAAGTAAACTTCTAAGATTCATTT
* **
26135661 AGATATTGTTCTAAAAAAAAGAAAGAGAATGAATTTTTTTTAAATATTTACTTTTTTAAAAAATT
196 AGATATTATTCT-AAAAAAAGAAAGAGAATGAAAATTTTTTAAATATTTACTTTTTTAAAAAATT
26135726 TTAATTGAATGATATAATTAATAAAAAATATTTT
260 TTAATTGAATGATATAATTAATAAAAAATATTTT
** * * * * *
26135760 GATTTATTTAAATGAGTTTGATTACAACTATTTGAAGGAATGTTATTTTAAAAATTTTGGAAATT
1 GATTTATTTAAACAAATTCGATTACAAATACTTGAAGGAATGCTATTTTAAAAATTTTGGAAATT
* ** * * *
26135825 GTATTTTATTTGTATATTTTTAATATTTTATGTGTATAATTGAAAGAAAATAAAAATTTATAATC
66 GAATTTTATTCATACATTTTTAATATTTTATGGGTATAATTAAAAGAAAATAAAAATTTATAATC
*
26135890 TTAATTTCATACAATAAAAATTTGAGAATTTGTTTATATTTTTAAGTAAACTT-TCAGGATTCAT
131 TTAATTTCATACAAT-AAAATTTGAGAATTTGTTTATATTTTTAAGTAAACTTCT-AAGATTCAT
26135954 TTAGATATTATTCT-AAAAAAGAAAGAGAATGAAAAATTTTTTAA
194 TTAGATATTATTCTAAAAAAAGAAAGAGAATG-AAAATTTTTTAA
26135998 TTACTAGCAT
Statistics
Matches: 208, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
293 17 0.08
294 137 0.66
295 54 0.26
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (293 bp):
GATTTATTTAAACAAATTCGATTACAAATACTTGAAGGAATGCTATTTTAAAAATTTTGGAAATT
GAATTTTATTCATACATTTTTAATATTTTATGGGTATAATTAAAAGAAAATAAAAATTTATAATC
TTAATTTCATACAATAAAATTTGAGAATTTGTTTATATTTTTAAGTAAACTTCTAAGATTCATTT
AGATATTATTCTAAAAAAAGAAAGAGAATGAAAATTTTTTAAATATTTACTTTTTTAAAAAATTT
TAATTGAATGATATAATTAATAAAAAATATTTT
Found at i:26137165 original size:33 final size:33
Alignment explanation
Indices: 26137095--26137178 Score: 79
Period size: 33 Copynumber: 2.6 Consensus size: 33
26137085 CAAAAGTAAA
* *
26137095 AAAAATAATAAAAAATAAGAGTTTTAAATAGTT
1 AAAAATAATAAAAAATAAGAGTTTTAAACAGTG
26137128 AAAAATAATAATAAAATATA-A-TTTTGAAACA-TG
1 AAAAATAATAA-AAAATA-AGAGTTTT-AAACAGTG
*
26137161 AAAAA-AA-AAAAAAAAAGA
1 AAAAATAATAAAAAATAAGA
26137179 CAGATGGAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
29 1 0.02
30 6 0.14
31 2 0.05
32 2 0.05
33 21 0.48
34 11 0.25
35 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.24
Consensus pattern (33 bp):
AAAAATAATAAAAAATAAGAGTTTTAAACAGTG
Found at i:26144360 original size:15 final size:16
Alignment explanation
Indices: 26144337--26144369 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26144327 TTTTAATTTC
*
26144337 AATTATTAAAATTTAA
1 AATTATTAAAATATAA
26144353 AATT-TTAAAATATAA
1 AATTATTAAAATATAA
26144368 AA
1 AA
26144370 AAAATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTATTAAAATATAA
Found at i:26145368 original size:19 final size:20
Alignment explanation
Indices: 26145330--26145369 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26145320 TTAAAAATAA
* *
26145330 ATTTTTGAATATTATATTAT
1 ATTTTTAAAAATTATATTAT
26145350 ATTTTTAAAAATTAT-TTAT
1 ATTTTTAAAAATTATATTAT
26145369 A
1 A
26145370 AAAAAACATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTTTTAAAAATTATATTAT
Found at i:26147546 original size:3 final size:3
Alignment explanation
Indices: 26147538--26147566 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26147528 TCAATTTTCT
26147538 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
26147567 TTCCTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:26147935 original size:22 final size:22
Alignment explanation
Indices: 26147907--26147955 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
26147897 CCATTTTATT
26147907 AATAAACAAAACAAAA-AAACAA
1 AATAAAC-AAACAAAAGAAACAA
*
26147929 AATAAACAAACAAAAGAAACAG
1 AATAAACAAACAAAAGAAACAA
26147951 AATAA
1 AATAA
26147956 GATAGAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.78, C:0.12, G:0.04, T:0.06
Consensus pattern (22 bp):
AATAAACAAACAAAAGAAACAA
Found at i:26147948 original size:13 final size:13
Alignment explanation
Indices: 26147910--26147949 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26147900 TTTTATTAAT
*
26147910 AAACAAAACAAAA
1 AAACAAAACAAAC
*
26147923 AAACAAAATAAAC
1 AAACAAAACAAAC
*
26147936 AAACAAAAGAAAC
1 AAACAAAACAAAC
26147949 A
1 A
26147950 GAATAAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.80, C:0.15, G:0.03, T:0.03
Consensus pattern (13 bp):
AAACAAAACAAAC
Found at i:26148189 original size:23 final size:23
Alignment explanation
Indices: 26148159--26148221 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
26148149 AAAGAGCTGG
26148159 CTGAAATCCCCTTCAATCTCCCT
1 CTGAAATCCCCTTCAATCTCCCT
26148182 CTGAAATCCCCTTCAATCTCCCT
1 CTGAAATCCCCTTCAATCTCCCT
*
26148205 CTGGAATCCCCATTCAA
1 CTGAAATCCCC-TTCAA
26148222 CCCCAGACAG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 33 0.87
24 5 0.13
ACGTcount: A:0.24, C:0.41, G:0.06, T:0.29
Consensus pattern (23 bp):
CTGAAATCCCCTTCAATCTCCCT
Found at i:26148885 original size:14 final size:15
Alignment explanation
Indices: 26148861--26148918 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
26148851 TCTGACTGGA
26148861 CCAGAACCGAACCGC
1 CCAGAACCGAACCGC
*
26148876 CCAG-ACCGAACCGAA
1 CCAGAACCGAACCG-C
*
26148891 CCGGAACCGAACCGC
1 CCAGAACCGAACCGC
26148906 CCAG-ACCGAACCG
1 CCAGAACCGAACCG
26148919 AACCGGTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 18 0.49
15 10 0.27
16 9 0.24
ACGTcount: A:0.33, C:0.45, G:0.22, T:0.00
Consensus pattern (15 bp):
CCAGAACCGAACCGC
Found at i:26148888 original size:19 final size:19
Alignment explanation
Indices: 26148859--26148923 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
26148849 GGTCTGACTG
26148859 GACCAGAACCGAACCGCCCA
1 GACC-GAACCGAACCGCCCA
26148879 GACCGAACCGAA----CC-
1 GACCGAACCGAACCGCCCA
26148893 G---GAACCGAACCGCCCA
1 GACCGAACCGAACCGCCCA
26148909 GACCGAACCGAACCG
1 GACCGAACCGAACCG
26148924 GTACTGGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 17
0.69 0.00 0.31
Matches are distributed among these distances:
11 8 0.22
14 1 0.03
15 4 0.11
16 1 0.03
19 19 0.51
20 4 0.11
ACGTcount: A:0.34, C:0.43, G:0.23, T:0.00
Consensus pattern (19 bp):
GACCGAACCGAACCGCCCA
Found at i:26148900 original size:30 final size:30
Alignment explanation
Indices: 26148864--26148953 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 30
26148854 GACTGGACCA
26148864 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
26148894 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
* * * *
26148924 GTACTGGACCGTCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
26148954 TCGAACCAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.31, C:0.41, G:0.24, T:0.03
Consensus pattern (30 bp):
GAACCGAACCGCCCAGACCGAACCGAACCG
Found at i:26149882 original size:193 final size:192
Alignment explanation
Indices: 26149636--26150017 Score: 660
Period size: 193 Copynumber: 2.0 Consensus size: 192
26149626 GCATGGCATG
* *
26149636 CATGACATAATTTCTTACGAAAAGTAAATTTAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACAT-ATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
26149701 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGAA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGAA
*
26149766 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAAATTTTTTTAA
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTA-TTTTCTCAAGAAT-AATTTTTTTAA
26149831 CATGACAT-TTTCTTACGAAAAATAAATTCGAG-CCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACATATTTCTTACGAAAAATAAATT-GAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
* *
26149894 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGAA
*
26149959 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTGATTTATTTTCTCAAGAATAATTTTT
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCAAGAATAATTTTT
26150018 AATAAATAAA
Statistics
Matches: 180, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
191 7 0.04
192 12 0.07
193 151 0.84
194 2 0.01
195 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (192 bp):
CATGACATATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCGA
GTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGAAA
CATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCAAGAATAATTTTTTTAA
Found at i:26155840 original size:49 final size:49
Alignment explanation
Indices: 26155713--26156103 Score: 477
Period size: 49 Copynumber: 7.8 Consensus size: 49
26155703 AAATTTGAAA
* * * * *
26155713 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGTAACTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
*
26155762 AAGAAGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
*
26155810 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
26155859 AAGATGAGAATTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
26155908 AAGATGAGATTTTTTAAAGTTG-TGAAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGA-ATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTTCC
*
26155957 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTG-TGGAAAACAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCT-G-----AGAGGAGCTTTTCC
* *
26156011 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTGAAAATAGAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTG-----AGAGGAGCTTTTCC
* *
26156065 AAGATGAGAATTTTAAAGTTGTTGAGCTTTTGCTGAGAG
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAG
26156104 CAGAGGAGCT
Statistics
Matches: 306, Mismatches: 23, Indels: 26
0.86 0.06 0.07
Matches are distributed among these distances:
47 1 0.00
48 62 0.20
49 114 0.37
50 35 0.11
53 12 0.04
54 81 0.26
55 1 0.00
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (49 bp):
AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
Found at i:26155922 original size:99 final size:98
Alignment explanation
Indices: 26155713--26156103 Score: 486
Period size: 97 Copynumber: 3.9 Consensus size: 98
26155703 AAATTTGAAA
* * * * *
26155713 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGTAACTTTTTCAAGAAGA-AATTTTAA
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAA
*
26155777 AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
66 AGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
26155810 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAATTTTTA
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA-TTTTA
*
26155875 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
65 AAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
26155908 AAGATGAGATTTTTTAAAGTTG-TGAAACCTCTGCTGAGAGGAGC-TTTTCAAGATGAGAATTTT
1 AAGATGAGA-ATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTT
26155971 AAAGTTGTGGAGCCTCTG-TGGAAAACAGAGGAGCTTTTCC
64 AAAGTTGTGGAGCCTCTGCT-G-----AGAGGAGCTTTTCC
*
26156011 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTGAAAATAGAGGAGCTTTTTCAAGATGAGAAT
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTG-----AGAGGAGCTTTTTCAAGATGAGAAT
* * *
26156076 TTTAAAGTTGTTGAGCTTTTGCTGAGAG
61 TTTAAAGTTGTGGAGCCTCTGCTGAGAG
26156104 CAGAGGAGCT
Statistics
Matches: 257, Mismatches: 18, Indels: 32
0.84 0.06 0.10
Matches are distributed among these distances:
96 1 0.00
97 71 0.28
98 28 0.11
99 65 0.25
102 32 0.12
103 16 0.06
107 8 0.03
108 35 0.14
109 1 0.00
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (98 bp):
AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAA
AGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
Found at i:26156141 original size:13 final size:12
Alignment explanation
Indices: 26156119--26156150 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26156109 GAGCTTTTCC
*
26156119 AAAAACAAAAAT
1 AAAAAAAAAAAT
26156131 AAAAAAAAAAAT
1 AAAAAAAAAAAT
26156143 AAAAAAAA
1 AAAAAAAA
26156151 TTCACGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.91, C:0.03, G:0.00, T:0.06
Consensus pattern (12 bp):
AAAAAAAAAAAT
Found at i:26156298 original size:22 final size:22
Alignment explanation
Indices: 26156270--26156318 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
26156260 CCATTTTATT
26156270 AATAAACAAAACAAAA-AAACAA
1 AATAAAC-AAACAAAAGAAACAA
*
26156292 AATAAACAAACAAAAGAAACAG
1 AATAAACAAACAAAAGAAACAA
26156314 AATAA
1 AATAA
26156319 GATAGAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.78, C:0.12, G:0.04, T:0.06
Consensus pattern (22 bp):
AATAAACAAACAAAAGAAACAA
Found at i:26156311 original size:13 final size:13
Alignment explanation
Indices: 26156273--26156312 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26156263 TTTTATTAAT
*
26156273 AAACAAAACAAAA
1 AAACAAAACAAAC
*
26156286 AAACAAAATAAAC
1 AAACAAAACAAAC
*
26156299 AAACAAAAGAAAC
1 AAACAAAACAAAC
26156312 A
1 A
26156313 GAATAAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.80, C:0.15, G:0.03, T:0.03
Consensus pattern (13 bp):
AAACAAAACAAAC
Found at i:26156392 original size:12 final size:12
Alignment explanation
Indices: 26156355--26156405 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
26156345 GCCGCTGTCG
26156355 CCAG-CCCCCGA
1 CCAGCCCCCCGA
* ** *
26156366 CCAACTACCCTA
1 CCAGCCCCCCGA
26156378 CCAGCCCCCCGA
1 CCAGCCCCCCGA
*
26156390 CCAGCCTCCCGA
1 CCAGCCCCCCGA
26156402 CCAG
1 CCAG
26156406 TCACCCTACA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
11 3 0.10
12 27 0.90
ACGTcount: A:0.22, C:0.59, G:0.14, T:0.06
Consensus pattern (12 bp):
CCAGCCCCCCGA
Found at i:26156404 original size:24 final size:23
Alignment explanation
Indices: 26156355--26156405 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
26156345 GCCGCTGTCG
*
26156355 CCAGCCCCCGACCAACTACCCTA
1 CCAGCCCCCGACCAACTACCCGA
*
26156378 CCAGCCCCCCGACCAGCCT-CCCGA
1 CCAG-CCCCCGACCA-ACTACCCGA
26156402 CCAG
1 CCAG
26156406 TCACCCTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.17
24 18 0.75
25 2 0.08
ACGTcount: A:0.22, C:0.59, G:0.14, T:0.06
Consensus pattern (23 bp):
CCAGCCCCCGACCAACTACCCGA
Found at i:26156551 original size:23 final size:23
Alignment explanation
Indices: 26156521--26156583 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
26156511 AAAGAGCTGG
26156521 CTGAAATCCCCTTCAATCTCCCT
1 CTGAAATCCCCTTCAATCTCCCT
26156544 CTGAAATCCCCTTCAATCTCCCT
1 CTGAAATCCCCTTCAATCTCCCT
*
26156567 CTGGAATCCCCATTCAA
1 CTGAAATCCCC-TTCAA
26156584 CCCCAGACAG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 33 0.87
24 5 0.13
ACGTcount: A:0.24, C:0.41, G:0.06, T:0.29
Consensus pattern (23 bp):
CTGAAATCCCCTTCAATCTCCCT
Found at i:26157250 original size:14 final size:15
Alignment explanation
Indices: 26157226--26157283 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
26157216 TCTGACTGGA
26157226 CCAGAACCGAACCGC
1 CCAGAACCGAACCGC
*
26157241 CCAG-ACCGAACCGAA
1 CCAGAACCGAACCG-C
*
26157256 CCGGAACCGAACCGC
1 CCAGAACCGAACCGC
26157271 CCAG-ACCGAACCG
1 CCAGAACCGAACCG
26157284 AACCGGTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 18 0.49
15 10 0.27
16 9 0.24
ACGTcount: A:0.33, C:0.45, G:0.22, T:0.00
Consensus pattern (15 bp):
CCAGAACCGAACCGC
Found at i:26157253 original size:19 final size:19
Alignment explanation
Indices: 26157224--26157288 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
26157214 GGTCTGACTG
26157224 GACCAGAACCGAACCGCCCA
1 GACC-GAACCGAACCGCCCA
26157244 GACCGAACCGAA----CC-
1 GACCGAACCGAACCGCCCA
26157258 G---GAACCGAACCGCCCA
1 GACCGAACCGAACCGCCCA
26157274 GACCGAACCGAACCG
1 GACCGAACCGAACCG
26157289 GTACTGGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 17
0.69 0.00 0.31
Matches are distributed among these distances:
11 8 0.22
14 1 0.03
15 4 0.11
16 1 0.03
19 19 0.51
20 4 0.11
ACGTcount: A:0.34, C:0.43, G:0.23, T:0.00
Consensus pattern (19 bp):
GACCGAACCGAACCGCCCA
Found at i:26157265 original size:30 final size:30
Alignment explanation
Indices: 26157229--26157318 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 30
26157219 GACTGGACCA
26157229 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
26157259 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
* * * *
26157289 GTACTGGACCGTCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
26157319 TCGAACCAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.31, C:0.41, G:0.24, T:0.03
Consensus pattern (30 bp):
GAACCGAACCGCCCAGACCGAACCGAACCG
Found at i:26158247 original size:193 final size:192
Alignment explanation
Indices: 26158001--26158382 Score: 678
Period size: 193 Copynumber: 2.0 Consensus size: 192
26157991 GCATGGCATG
* *
26158001 CATGACATAATTTCTTACGAAAAGTAAATTTAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACAT-ATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
26158066 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
26158131 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAAATTTTTTTAA
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTA-TTTTCTCGAGAAT-AATTTTTTTAA
26158196 CATGACAT-TTTCTTACGAAAAATAAATTCGAG-CCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACATATTTCTTACGAAAAATAAATT-GAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
*
26158259 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
*
26158324 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTGATTTATTTTCTCGAGAATAATTTTT
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCGAGAATAATTTTT
26158383 AATAAATAAA
Statistics
Matches: 182, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
191 7 0.04
192 13 0.07
193 152 0.84
194 2 0.01
195 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (192 bp):
CATGACATATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCGA
GTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGAA
CATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCGAGAATAATTTTTTTAA
Found at i:26159555 original size:11 final size:11
Alignment explanation
Indices: 26159539--26159568 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26159529 TGAAGGTCAT
26159539 TTCCTCATTTC
1 TTCCTCATTTC
26159550 TTCCTCATTTC
1 TTCCTCATTTC
*
26159561 TTCATCAT
1 TTCCTCAT
26159569 AGGCCAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.33, G:0.00, T:0.53
Consensus pattern (11 bp):
TTCCTCATTTC
Found at i:26159612 original size:16 final size:16
Alignment explanation
Indices: 26159591--26159625 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26159581 AAAGCCCATT
26159591 AAGAAAAAAAAAAAAA
1 AAGAAAAAAAAAAAAA
* *
26159607 AAGAAAAAGAAAAAGA
1 AAGAAAAAAAAAAAAA
26159623 AAG
1 AAG
26159626 CGTATGTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAAAAAAA
Found at i:26159621 original size:6 final size:6
Alignment explanation
Indices: 26159591--26159624 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
26159581 AAAGCCCATT
26159591 AAGAAA AA-AAA AA-AAA AAGAAA AAGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
26159625 GCGTATGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.37
6 17 0.63
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:26160328 original size:7 final size:7
Alignment explanation
Indices: 26160316--26160344 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
26160306 ACAAGAGAAA
26160316 CCTGCAG
1 CCTGCAG
26160323 CCTGCAG
1 CCTGCAG
26160330 CCTGCAG
1 CCTGCAG
26160337 CCTGCAG
1 CCTGCAG
26160344 C
1 C
26160345 ACACCGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.45, G:0.28, T:0.14
Consensus pattern (7 bp):
CCTGCAG
Found at i:26166079 original size:14 final size:14
Alignment explanation
Indices: 26166060--26166109 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
26166050 CCGGTATATA
26166060 TTATTTTTTATTAT
1 TTATTTTTTATTAT
26166074 TTATTTAATTT-TATAT
1 TTATTT--TTTAT-TAT
*
26166090 TTATATTTTATTAT
1 TTATTTTTTATTAT
26166104 TTATTT
1 TTATTT
26166110 AATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 17 0.57
15 2 0.07
16 11 0.37
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTTTATTAT
Found at i:26166100 original size:30 final size:30
Alignment explanation
Indices: 26166054--26166121 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
26166044 ATCTGTCCGG
*
26166054 TATATATTATTTTTTATTATTTATTTAATTT
1 TATAT-TTATATTTTATTATTTATTTAATTT
26166085 TATATTTATATTTTATTATTTATTTAATTT
1 TATATTTATATTTTATTATTTATTTAATTT
*
26166115 TTTATTT
1 TATATTT
26166122 TAAATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 30 0.86
31 5 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (30 bp):
TATATTTATATTTTATTATTTATTTAATTT
Found at i:26166116 original size:18 final size:17
Alignment explanation
Indices: 26166065--26166121 Score: 79
Period size: 16 Copynumber: 3.6 Consensus size: 17
26166055 ATATATTATT
26166065 TTTTATTATTTATTTAA
1 TTTTATTATTTATTTAA
26166082 TTTTA-TATTTA--T-A
1 TTTTATTATTTATTTAA
26166095 TTTTATTATTTATTTAA
1 TTTTATTATTTATTTAA
26166112 TTTT-TTATTT
1 TTTTATTATTT
26166122 TAAATTAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 6 0.17
14 7 0.19
16 13 0.36
17 10 0.28
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTATTTATTTAA
Found at i:26166167 original size:19 final size:19
Alignment explanation
Indices: 26166117--26166167 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
26166107 TTTAATTTTT
*
26166117 TATTTTAAATTAAAAATAA
1 TATTTTATATTAAAAATAA
*
26166136 TATTTTATTTTAAAAATTAA
1 TATTTTATATTAAAAA-TAA
26166156 TATTTT-TATTAA
1 TATTTTATATTAA
26166168 TTTTAAGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTATATTAAAAATAA
Found at i:26166243 original size:20 final size:19
Alignment explanation
Indices: 26166213--26166271 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 19
26166203 TATACATATT
26166213 AAATCAAATTTAAATATTAA
1 AAAT-AAATTTAAATATTAA
*
26166233 AAATAATATTTTAATATT-A
1 AAATAA-ATTTAAATATTAA
* *
26166252 AATTAAATTCAAATATTAA
1 AAATAAATTTAAATATTAA
26166271 A
1 A
26166272 TTTATAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 9 0.27
19 10 0.30
20 14 0.42
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATAAATTTAAATATTAA
Found at i:26166273 original size:18 final size:18
Alignment explanation
Indices: 26166208--26166273 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
26166198 TAGCATATAC
*
26166208 ATATTAAATCAAATTTAA
1 ATATTAAATTAAATTTAA
* *
26166226 ATATTAAAAATAATATTTTA
1 ATATT-AAATTAA-ATTTAA
*
26166246 ATATTAAATTAAATTCAA
1 ATATTAAATTAAATTTAA
26166264 ATATTAAATT
1 ATATTAAATT
26166274 TATAAAATCA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 19 0.47
19 11 0.28
20 10 0.25
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATTAAATTAAATTTAA
Found at i:26175979 original size:15 final size:15
Alignment explanation
Indices: 26175959--26175988 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26175949 AGTGTTGTGT
*
26175959 AAAGAAAAATAATAA
1 AAAGAAAAACAATAA
26175974 AAAGAAAAACAATAA
1 AAAGAAAAACAATAA
26175989 TTTCTTTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAGAAAAACAATAA
Found at i:26179973 original size:32 final size:31
Alignment explanation
Indices: 26179910--26179978 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
26179900 NNAAATTATC
* *
26179910 TAGCACCAATAAAGTTTAAGCTCAATTTAAT
1 TAGCACCAATAAAGTTTAAGCCCAATATAAT
26179941 TAGCACCAATAAAAAG-TTAAGCCCAATATAAT
1 TAGCACCAAT--AAAGTTTAAGCCCAATATAAT
*
26179973 TGGCAC
1 TAGCAC
26179979 GTAAACCCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 10 0.30
32 19 0.58
33 4 0.12
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (31 bp):
TAGCACCAATAAAGTTTAAGCCCAATATAAT
Found at i:26180215 original size:33 final size:32
Alignment explanation
Indices: 26180178--26180503 Score: 125
Period size: 33 Copynumber: 10.1 Consensus size: 32
26180168 CTACATAAAA
26180178 TTTAAGCCCAATTTATCTGGCTATCAATAAAGT
1 TTTAAGCCCAATTTATCTGGCT-TCAATAAAGT
* * * * *
26180211 TTTAAACCCAATTTAGCTGGCCCTCAAGAAAAT
1 TTTAAGCCCAATTTATCTGG-CTTCAATAAAGT
* *
26180244 TTTAAGCCC--TTTATTTGGCCTTCAAT----C
1 TTTAAGCCCAATTTATCTGG-CTTCAATAAAGT
* * * * *
26180271 TTTAAGCTCAGTTTATCTGGCCTTTGAAGAAA-A
1 TTTAAGCCCAATTTATCTGG-C-TTCAATAAAGT
* * * *
26180304 TTTAAGCCCAGTTTATCTAGTCATCAATGAAGT
1 TTTAAGCCCAATTTATCT-GGCTTCAATAAAGT
* * * * * *
26180337 TTTAAGCCTAGTTTAGCTAGCCCTT-AAGAAAAT
1 TTTAAGCCCAATTTATCT-G-GCTTCAATAAAGT
*
26180370 TTTAAGCCCAATTTATCTGGCCATT-AATGAAGT
1 TTTAAGCCCAATTTATCTGG-C-TTCAATAAAGT
* ** * * ** *
26180403 TTTAAACTTAGTTTATCTAGCCCCAAATGAAGT
1 TTTAAGCCCAATTTATCTGGCTTC-AATAAAGT
* *
26180436 TTTAAGCCCAATTTAACTGACCTTCAATGAAA--
1 TTTAAGCCCAATTTATCTG-GCTTCAAT-AAAGT
* * * *
26180468 TTTAAACCCAATTTATTTGGCTCCAAAAAAGT
1 TTTAAGCCCAATTTATCTGGCTTCAATAAAGT
26180500 TTTA
1 TTTA
26180504 GAGTTTCAAG
Statistics
Matches: 215, Mismatches: 60, Indels: 37
0.69 0.19 0.12
Matches are distributed among these distances:
27 8 0.04
29 10 0.05
30 7 0.03
31 18 0.08
32 28 0.13
33 136 0.63
34 8 0.04
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (32 bp):
TTTAAGCCCAATTTATCTGGCTTCAATAAAGT
Found at i:26180350 original size:66 final size:66
Alignment explanation
Indices: 26180174--26180450 Score: 232
Period size: 66 Copynumber: 4.3 Consensus size: 66
26180164 AAATCTACAT
* * * * * * * * *
26180174 AAAA-TTTAAGCCCAATTTATCTGGCTATCAATAAAGTTTTAAACCCAATTTAGCTGGCCCTCAA
1 AAAATTTTAAGCCCAATTTATCTAGCCATCAATGAAGTTTTAAGCCTAGTTTATCTAGCCCTTAA
26180238 G
66 G
* * * * * *
26180239 AAAATTTTAAGCCC--TTTATTTGGCCTTCAAT----CTTTAAG-CTCAGTTTATCTGGCCTTTG
1 AAAATTTTAAGCCCAATTTATCTAGCCATCAATGAAGTTTTAAGCCT-AGTTTATCTAGCCCTT-
26180297 AAG
64 AAG
* * *
26180300 AAAA-TTTAAGCCCAGTTTATCTAGTCATCAATGAAGTTTTAAGCCTAGTTTAGCTAGCCCTTAA
1 AAAATTTTAAGCCCAATTTATCTAGCCATCAATGAAGTTTTAAGCCTAGTTTATCTAGCCCTTAA
26180364 G
66 G
* * * * **
26180365 AAAATTTTAAGCCCAATTTATCTGGCCATTAATGAAGTTTTAAACTTAGTTTATCTAGCCCCAAA
1 AAAATTTTAAGCCCAATTTATCTAGCCATCAATGAAGTTTTAAGCCTAGTTTATCTAGCCCTTAA
26180430 TG
66 -G
*
26180432 -AAGTTTTAAGCCCAATTTA
1 AAAATTTTAAGCCCAATTTA
26180451 ACTGACCTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
59 1 0.01
60 26 0.15
61 7 0.04
62 13 0.08
64 14 0.08
65 11 0.06
66 97 0.56
67 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (66 bp):
AAAATTTTAAGCCCAATTTATCTAGCCATCAATGAAGTTTTAAGCCTAGTTTATCTAGCCCTTAA
G
Found at i:26180465 original size:66 final size:67
Alignment explanation
Indices: 26180297--26180475 Score: 183
Period size: 66 Copynumber: 2.7 Consensus size: 67
26180287 CTGGCCTTTG
* * * *
26180297 AAGAAAA-TTTAAGCCCAGTTTATCT-AGTCA-TCAATGAAGTTTTAAGCCTAGTTTAGCTAGCC
1 AAGAAAATTTTAAGCCCAATTTAACTGA-CCATTCAATGAAGTTTTAAACCTAGTTTAGCTAGCC
**
26180359 CTT
65 CCA
* * * *
26180362 AAGAAAATTTTAAGCCCAATTTATCTGGCCATT-AATGAAGTTTTAAACTTAGTTTATCTAGCCC
1 AAGAAAATTTTAAGCCCAATTTAACTGACCATTCAATGAAGTTTTAAACCTAGTTTAGCTAGCCC
26180426 CA
66 CA
* *
26180428 AATG-AAGTTTTAAGCCCAATTTAACTGACC-TTCAATGAA-ATTTAAACC
1 AA-GAAAATTTTAAGCCCAATTTAACTGACCATTCAATGAAGTTTTAAACC
26180476 CAATTTATTT
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
65 16 0.17
66 78 0.81
67 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (67 bp):
AAGAAAATTTTAAGCCCAATTTAACTGACCATTCAATGAAGTTTTAAACCTAGTTTAGCTAGCCC
CA
Found at i:26181104 original size:22 final size:22
Alignment explanation
Indices: 26181074--26181145 Score: 90
Period size: 22 Copynumber: 3.3 Consensus size: 22
26181064 AAAATTTTAA
26181074 AATTTTTAAGACCTCTAGGCAT
1 AATTTTTAAGACCTCTAGGCAT
** * *
26181096 GCTTTTTAAAACCTCTTGGCAT
1 AATTTTTAAGACCTCTAGGCAT
* *
26181118 AATTTTTAAGACCTCCAGGTAT
1 AATTTTTAAGACCTCTAGGCAT
26181140 AATTTT
1 AATTTT
26181146 GATTTGTGAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (22 bp):
AATTTTTAAGACCTCTAGGCAT
Found at i:26181220 original size:35 final size:35
Alignment explanation
Indices: 26181139--26181257 Score: 141
Period size: 36 Copynumber: 3.3 Consensus size: 35
26181129 CCTCCAGGTA
* *
26181139 TAATTTTGATTTG-TGATGTTATCCCGATCGATTCTT
1 TAATTTTGACTTGTTG-TGTTATCTCGATCGATTC-T
*
26181175 TAATTTTGACTTGTTGTGTTATCTCGATCAATTCT
1 TAATTTTGACTTGTTGTGTTATCTCGATCGATTCT
* * * *
26181210 TAATTTTGACTTATGGTATTATCTCGATCGATTCCA
1 TAATTTTGACTTGTTGTGTTATCTCGATCGATT-CT
26181246 TAATTTTGACTT
1 TAATTTTGACTT
26181258 ACGGTGTTCT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
35 30 0.41
36 41 0.56
37 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.50
Consensus pattern (35 bp):
TAATTTTGACTTGTTGTGTTATCTCGATCGATTCT
Found at i:26181402 original size:36 final size:36
Alignment explanation
Indices: 26181325--26181490 Score: 109
Period size: 36 Copynumber: 4.6 Consensus size: 36
26181315 TTTTTTACTT
* * ** * * *
26181325 TTTGAATTACGGTGTTATCTTGGTC-AATTCTTAAT
1 TTTGACTTACGGTGTTGTCCCGGTCGATTTCATAAA
* * *
26181360 TTTGACTTGCGGTGTTGTCCCGGTTGATTTCATAAC
1 TTTGACTTACGGTGTTGTCCCGGTCGATTTCATAAA
** * * * * **
26181396 TTTGACTTACAATGTTGTTCCAGTCGTTTTCTTTATTT
1 TTTGACTTACGGTGTTGTCCCGGTCGATTTC-ATA-AA
* * *
26181434 TTTGACTCATGGTGTTGTCCCGATCGATTTCATAAA
1 TTTGACTTACGGTGTTGTCCCGGTCGATTTCATAAA
*
26181470 TTTGACTTGCGGTGTTGTCCC
1 TTTGACTTACGGTGTTGTCCC
26181491 AATCATTTTT
Statistics
Matches: 95, Mismatches: 33, Indels: 5
0.71 0.25 0.04
Matches are distributed among these distances:
35 19 0.20
36 49 0.52
37 4 0.04
38 23 0.24
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (36 bp):
TTTGACTTACGGTGTTGTCCCGGTCGATTTCATAAA
Found at i:26181448 original size:146 final size:146
Alignment explanation
Indices: 26181155--26181463 Score: 352
Period size: 146 Copynumber: 2.1 Consensus size: 146
26181145 TGATTTGTGA
* * * * ***
26181155 TGTTATCCCGATCGATTCTTTA-ATTTTGACTTGTTGTGTTATCTCGATCAATTCTTAATTTTGA
1 TGTTGTCCCGATCGATTTTTTACTTTTTGAATTACGGTGTTATCTCGATCAATTCTTAATTTTGA
* * * ** *
26181219 CTTATGGTATTATCTCGATCGATTCCATAATTTTGACTTACGGTGTTCTCACAATCTTTTTCTTT
66 CTTACGGTATTATCCCGATCGATTCCATAACTTTGACTTACAATGTTCTCACAATCGTTTTCTTT
*
26181284 ATTTTTTAACTCGCGG
131 ATTTTTTAACTCACGG
* * *
26181300 TGTTGTCCTGATCGATTTTTTACTTTTTGAATTACGGTGTTATCTTGGTCAATTCTTAATTTTGA
1 TGTTGTCCCGATCGATTTTTTACTTTTTGAATTACGGTGTTATCTCGATCAATTCTTAATTTTGA
* * * * * * * *
26181365 CTTGCGGTGTTGTCCCGGTTGATTTCATAACTTTGACTTACAATGTTGTTC-CAGTCGTTTTCTT
66 CTTACGGTATTATCCCGATCGATTCCATAACTTTGACTTACAATGTT-CTCACAATCGTTTTCTT
* *
26181429 TATTTTTTGACTCATGG
130 TATTTTTTAACTCACGG
26181446 TGTTGTCCCGATCGATTT
1 TGTTGTCCCGATCGATTT
26181464 CATAAATTTG
Statistics
Matches: 134, Mismatches: 28, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
145 19 0.14
146 113 0.84
147 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.49
Consensus pattern (146 bp):
TGTTGTCCCGATCGATTTTTTACTTTTTGAATTACGGTGTTATCTCGATCAATTCTTAATTTTGA
CTTACGGTATTATCCCGATCGATTCCATAACTTTGACTTACAATGTTCTCACAATCGTTTTCTTT
ATTTTTTAACTCACGG
Found at i:26181573 original size:36 final size:36
Alignment explanation
Indices: 26181533--26181602 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
26181523 ATCCTGGTTA
*
26181533 ATTCCATAATTTCGATTTACGGTGTTATCCTGATCG
1 ATTCCATAATTTCGACTTACGGTGTTATCCTGATCG
*
26181569 ATTCCATAATTTTGACTTACGGTGTTATCCTGAT
1 ATTCCATAATTTCGACTTACGGTGTTATCCTGAT
26181603 TGTTTTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.43
Consensus pattern (36 bp):
ATTCCATAATTTCGACTTACGGTGTTATCCTGATCG
Found at i:26182119 original size:21 final size:23
Alignment explanation
Indices: 26182093--26182148 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
26182083 TTTCCCTTTT
* *
26182093 ATTTATTAGATATTAA-TAA-TA
1 ATTTATTAAAAATTAACTAATTA
26182114 ATTTATTAAAAATTAACTAATTA
1 ATTTATTAAAAATTAACTAATTA
*
26182137 ATTTTTTAAAAA
1 ATTTATTAAAAA
26182149 ATACAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 14 0.47
22 3 0.10
23 13 0.43
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTATTAAAAATTAACTAATTA
Found at i:26188809 original size:21 final size:21
Alignment explanation
Indices: 26188776--26188817 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26188766 TATTAAAAAC
*
26188776 TTTTAATTTATCGATTTTAAT
1 TTTTAATTAATCGATTTTAAT
* *
26188797 TTTTACTTAATCGTTTTTAAT
1 TTTTAATTAATCGATTTTAAT
26188818 AAAAAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTAATTAATCGATTTTAAT
Found at i:26194220 original size:14 final size:14
Alignment explanation
Indices: 26194203--26194233 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26194193 AAGAAAACCC
26194203 AAAAACTCATCCAA
1 AAAAACTCATCCAA
*
26194217 AAAAACTTATCCAA
1 AAAAACTCATCCAA
26194231 AAA
1 AAA
26194234 GAAACAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAACTCATCCAA
Found at i:26199248 original size:16 final size:16
Alignment explanation
Indices: 26199218--26199259 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
26199208 CATTTAAATT
26199218 AATAAAAATAT-AATCA
1 AATAAAAA-ATCAATCA
*
26199234 AATAATAAATCAATCA
1 AATAAAAAATCAATCA
*
26199250 TATAAAAAAT
1 AATAAAAAAT
26199260 AATAATTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAAAAATCAATCA
Found at i:26199337 original size:22 final size:22
Alignment explanation
Indices: 26199288--26199337 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
26199278 AATTAGATCA
26199288 AATTAT-ATTAAATTATTATTT
1 AATTATAATTAAATTATTATTT
*
26199309 -TTATATAATT-AATTAATTATTT
1 AAT-TATAATTAAATT-ATTATTT
26199331 AATTATA
1 AATTATA
26199338 TTTTCGTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
20 1 0.04
21 7 0.30
22 14 0.61
23 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
AATTATAATTAAATTATTATTT
Found at i:26200589 original size:1 final size:1
Alignment explanation
Indices: 26200583--26200611 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
26200573 GGACCACTTC
26200583 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26200612 CAAATGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26201669 original size:21 final size:22
Alignment explanation
Indices: 26201630--26201682 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
26201620 ACCGAAATTA
*
26201630 ATAAAATATTATTTTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
26201652 ATAAAATATTA-ATTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
26201673 ATAAAATATT
1 ATAAAATATT
26201683 TAAAAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAATATTATATTTTTAAAT
Found at i:26201841 original size:11 final size:11
Alignment explanation
Indices: 26201825--26201849 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26201815 CTTCATCCTA
26201825 CCCGACCCGAC
1 CCCGACCCGAC
26201836 CCCGACCCGAC
1 CCCGACCCGAC
26201847 CCC
1 CCC
26201850 CGATTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00
Consensus pattern (11 bp):
CCCGACCCGAC
Found at i:26207122 original size:12 final size:12
Alignment explanation
Indices: 26207102--26207194 Score: 59
Period size: 12 Copynumber: 7.7 Consensus size: 12
26207092 TTAAATATTA
26207102 TAAAAATAAATT
1 TAAAAATAAATT
*
26207114 TAAAGATAAATT
1 TAAAAATAAATT
26207126 T-AAAAT--ATT
1 TAAAAATAAATT
*
26207135 TATCAAATATAAATA
1 TA--AAA-ATAAATT
* *
26207150 CAAAAATAAATA
1 TAAAAATAAATT
26207162 TAATATAA-AAATT
1 TAA-A-AATAAATT
*
26207175 TAAAAATAAAAT
1 TAAAAATAAATT
*
26207187 AAAAAATA
1 TAAAAATA
26207195 TTTTACTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
9 4 0.06
11 6 0.09
12 36 0.56
13 13 0.20
14 2 0.03
15 3 0.05
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (12 bp):
TAAAAATAAATT
Found at i:26207159 original size:36 final size:34
Alignment explanation
Indices: 26207094--26207194 Score: 80
Period size: 36 Copynumber: 2.8 Consensus size: 34
26207084 CATGCCCATT
** *
26207094 AAATATTATAAAAATAAATTTAAAGATAAATTTA
1 AAATATTATAAAAATAAATACAAAAATAAATTTA
*
26207128 AAATATTTATCAAATATAAATACAAAAATAAATATAATA
1 AAATA-TTAT-AAAAATAAATACAAAAATAAAT-T--TA
*
26207167 TAAAAATT-TAAAAATAAAATA-AAAAATA
1 -AAATATTATAAAAAT-AAATACAAAAATA
26207195 TTTTACTCAC
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
34 5 0.09
35 4 0.07
36 18 0.33
37 13 0.24
38 6 0.11
39 4 0.07
40 4 0.07
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (34 bp):
AAATATTATAAAAATAAATACAAAAATAAATTTA
Found at i:26207160 original size:18 final size:17
Alignment explanation
Indices: 26207139--26207173 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26207129 AATATTTATC
26207139 AAATATAAATACAAAAAT
1 AAATAT-AATACAAAAAT
*
26207157 AAATATAATATAAAAAT
1 AAATATAATACAAAAAT
26207174 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATATAATACAAAAAT
Found at i:26208954 original size:24 final size:23
Alignment explanation
Indices: 26208909--26208954 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26208899 TGGTAAGAAG
* * *
26208909 TTTTTAATTTTATTTGAAATATT
1 TTTTTAAATTGATTTAAAATATT
26208932 TTTTTAAATTGATTTAAACATAT
1 TTTTTAAATTGATTTAAA-ATAT
26208955 ATATTTACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTTTAAATTGATTTAAAATATT
Found at i:26211247 original size:17 final size:18
Alignment explanation
Indices: 26211220--26211254 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26211210 AATATTTATC
*
26211220 AAATATGAATATGAAAAT
1 AAATATGAATATAAAAAT
26211238 AAATAT-AATATAAAAAT
1 AAATATGAATATAAAAAT
26211255 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
AAATATGAATATAAAAAT
Found at i:26211556 original size:15 final size:15
Alignment explanation
Indices: 26211536--26211566 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26211526 CGCCATTGCC
26211536 AAAGTTAGACAAATT
1 AAAGTTAGACAAATT
*
26211551 AAAGTTAGGCAAATT
1 AAAGTTAGACAAATT
26211566 A
1 A
26211567 CTAAAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (15 bp):
AAAGTTAGACAAATT
Found at i:26213229 original size:33 final size:32
Alignment explanation
Indices: 26213150--26213245 Score: 88
Period size: 33 Copynumber: 2.9 Consensus size: 32
26213140 AATTGAAATG
* *
26213150 AATTTTTACTTAT-TTTGAATTCGATTTAATTTT
1 AATTTTT--TTATATTTAAATTCGATTTGATTTT
* *
26213183 -ATATTTATAATATTTAAATTCGATTTGATTTAT
1 AAT-TTTTTTATATTTAAATTCGATTTGATTT-T
* *
26213216 AATTTTTTTATATTTAAATTTGATCTGATT
1 AATTTTTTTATATTTAAATTCGATTTGATT
26213246 CAATATTATA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
31 3 0.06
32 19 0.37
33 27 0.53
34 2 0.04
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.58
Consensus pattern (32 bp):
AATTTTTTTATATTTAAATTCGATTTGATTTT
Found at i:26213957 original size:32 final size:32
Alignment explanation
Indices: 26213914--26213995 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
26213904 TATAAATTAT
**
26213914 AATATAT-AATTTTTGTATAAAATATAATACA
1 AATATATAAATTTTAATATAAAATATAATACA
*** *
26213945 AATATATAAATTTTAATATTTTATATAATATA
1 AATATATAAATTTTAATATAAAATATAATACA
26213977 AATATATAAATTATTAATA
1 AATATATAAATT-TTAATA
26213996 GGGGCAGGGG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 7 0.16
32 30 0.70
33 6 0.14
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
AATATATAAATTTTAATATAAAATATAATACA
Found at i:26217609 original size:21 final size:22
Alignment explanation
Indices: 26217583--26217623 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26217573 TTGAGAAACA
* *
26217583 TTTTTATTAA-AATTTTTTAAT
1 TTTTTAATAAGAAATTTTTAAT
26217604 TTTTTAATAAGAAATTTTTA
1 TTTTTAATAAGAAATTTTTA
26217624 TAAAAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTTAATAAGAAATTTTTAAT
Found at i:26218045 original size:20 final size:20
Alignment explanation
Indices: 26218022--26218099 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
26218012 AAAAATAAAA
*
26218022 AATTGTCAAAATTATATAAG
1 AATTATCAAAATTATATAAG
* * *
26218042 AATTATCAATATTGTATAAAA
1 AATTATCAAAATTATAT-AAG
* *
26218063 AATTATTAAAATTGTATCTAAG
1 AATTATCAAAA-T-TATATAAG
26218085 -ATTATC-AAATTATAT
1 AATTATCAAAATTATAT
26218100 TAAAAGTTAT
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
18 4 0.09
19 1 0.02
20 17 0.39
21 16 0.36
22 3 0.07
23 3 0.07
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (20 bp):
AATTATCAAAATTATATAAG
Found at i:26218076 original size:21 final size:21
Alignment explanation
Indices: 26218016--26218093 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 21
26218006 AAGAAAAAAA
* *
26218016 ATAAAAAATTGTCAAAATTAT
1 ATAAAAAATTATCAAAATTGT
* *
26218037 AT-AAGAATTATCAATATTGT
1 ATAAAAAATTATCAAAATTGT
*
26218057 ATAAAAAATTATTAAAATTGT
1 ATAAAAAATTATCAAAATTGT
** *
26218078 ATCTAAGATTATCAAA
1 ATAAAAAATTATCAAA
26218094 TTATATTAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.36
Consensus pattern (21 bp):
ATAAAAAATTATCAAAATTGT
Found at i:26218109 original size:20 final size:19
Alignment explanation
Indices: 26218020--26218109 Score: 56
Period size: 20 Copynumber: 4.4 Consensus size: 19
26218010 AAAAAAATAA
*
26218020 AAAATTGTCAAAATTATA-T
1 AAAATTATC-AAATTATATT
* *
26218039 AAGAATTATCAATATTGTATAA
1 AA-AATTATCAA-ATTATAT-T
* *
26218061 AAAATTATTAAAATTGTATCT
1 AAAATTA-TCAAATTATAT-T
*
26218082 AAGATTATCAAATTATATT
1 AAAATTATCAAATTATATT
26218101 AAAAGTTAT
1 AAAA-TTAT
26218110 TTGGCGTTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
19 8 0.15
20 24 0.44
21 18 0.33
22 5 0.09
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.39
Consensus pattern (19 bp):
AAAATTATCAAATTATATT
Found at i:26218171 original size:21 final size:21
Alignment explanation
Indices: 26218145--26218193 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
26218135 ACTTAACAAT
26218145 ATTATATTATAA-GTT-ATCAAA
1 ATTATATTA-AAGGTTAAT-AAA
26218166 ATTATATTAAAGGTTAATAAA
1 ATTATATTAAAGGTTAATAAA
26218187 ATTATAT
1 ATTATAT
26218194 CGAATTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
ATTATATTAAAGGTTAATAAA
Found at i:26218415 original size:20 final size:20
Alignment explanation
Indices: 26218350--26218415 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
26218340 ATCAAAATAA
*
26218350 AAAATTATATTAAAGATTATC
1 AAAATTATATCAAAG-TTATC
** * * *
26218371 AAAATTGCATCTAGATTTAAC
1 AAAATTATATC-AAAGTTATC
26218392 -AAATTATATCAAAGTTATC
1 AAAATTATATCAAAGTTATC
26218411 AAAAT
1 AAAAT
26218416 CAAAATTATA
Statistics
Matches: 32, Mismatches: 11, Indels: 5
0.67 0.23 0.10
Matches are distributed among these distances:
19 6 0.19
20 12 0.38
21 12 0.38
22 2 0.06
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (20 bp):
AAAATTATATCAAAGTTATC
Found at i:26218616 original size:21 final size:20
Alignment explanation
Indices: 26218558--26218617 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
26218548 AATTTTTGAT
*
26218558 AAATATATCAATAGTTT-CCA
1 AAATATATCAA-AGTTTACAA
*
26218578 AAATCATACCATAA-TTTACAA
1 AAAT-ATATCA-AAGTTTACAA
26218599 AAATAATATCAAAGTTTAC
1 AAAT-ATATCAAAGTTTAC
26218618 TAAATTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 9 0.28
21 22 0.69
22 1 0.03
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (20 bp):
AAATATATCAAAGTTTACAA
Found at i:26218932 original size:10 final size:10
Alignment explanation
Indices: 26218919--26218950 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
26218909 ATTTCCTAAT
26218919 ATTTTATCAA
1 ATTTTATCAA
26218929 ATTTTATCAAA
1 ATTTTATC-AA
26218940 ATTTTATCAA
1 ATTTTATCAA
26218950 A
1 A
26218951 AAATATATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTTTATCAA
Found at i:26218943 original size:11 final size:11
Alignment explanation
Indices: 26218919--26218951 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
26218909 ATTTCCTAAT
26218919 ATTTTATC-AA
1 ATTTTATCAAA
26218929 ATTTTATCAAA
1 ATTTTATCAAA
26218940 ATTTTATCAAA
1 ATTTTATCAAA
26218951 A
1 A
26218952 AATATATAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (11 bp):
ATTTTATCAAA
Found at i:26228228 original size:2 final size:2
Alignment explanation
Indices: 26228221--26228255 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26228211 ATTTTCATTC
26228221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26228256 GAGAGAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26228260 original size:2 final size:2
Alignment explanation
Indices: 26228255--26228287 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26228245 ATATATATAT
26228255 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26228288 ATATTGGAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26233473 original size:23 final size:24
Alignment explanation
Indices: 26233447--26233495 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
26233437 CTAACCCGAT
26233447 ATTATATTAAAAATTATTT-TTTA
1 ATTATATTAAAAATTATTTATTTA
* * *
26233470 ATTATTTTTAAAATTTTTTATTTA
1 ATTATATTAAAAATTATTTATTTA
26233494 AT
1 AT
26233496 ATAATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
ATTATATTAAAAATTATTTATTTA
Found at i:26233531 original size:21 final size:21
Alignment explanation
Indices: 26233482--26233554 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 21
26233472 TATTTTTAAA
* * *
26233482 ATTTTTTATTTAATATAATTAT
1 ATTTTATATTTAA-AAAATAAT
26233504 ATATTTATATTTAAAAAATAAT
1 AT-TTTATATTTAAAAAATAAT
26233526 ATTTTATATTTTAAAAAATAAT
1 ATTTTATA-TTTAAAAAATAAT
26233548 ATTTTAT
1 ATTTTAT
26233555 TAATTTCATA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
21 6 0.13
22 30 0.65
23 10 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTTATATTTAAAAAATAAT
Found at i:26234031 original size:15 final size:15
Alignment explanation
Indices: 26234013--26234045 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26234003 TTGTTTATAT
*
26234013 TTCTCTACAGTTTCA
1 TTCTCTAAAGTTTCA
26234028 TTCTCTAAAGTTTCA
1 TTCTCTAAAGTTTCA
26234043 TTC
1 TTC
26234046 CCATGTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.48
Consensus pattern (15 bp):
TTCTCTAAAGTTTCA
Found at i:26239811 original size:2 final size:2
Alignment explanation
Indices: 26239806--26239848 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
26239796 TACTCTCTTC
* *
26239806 AT AT AT AA AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26239848 A
1 A
26239849 GTGTATATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:26239823 original size:12 final size:12
Alignment explanation
Indices: 26239806--26239848 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
26239796 TACTCTCTTC
26239806 ATATATAAATAT
1 ATATATAAATAT
26239818 ATATATAAATAT
1 ATATATAAATAT
*
26239830 ATATATATATAT
1 ATATATAAATAT
26239842 ATATATA
1 ATATATA
26239849 GTGTATATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:26242073 original size:14 final size:15
Alignment explanation
Indices: 26242056--26242095 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
26242046 ATATCTAATA
26242056 AATTTAAT-ATTTAT
1 AATTTAATAATTTAT
26242070 AATTT-ATAATTTAT
1 AATTTAATAATTTAT
26242084 AATTT-ATAATTT
1 AATTTAATAATTT
26242096 TTTTTCTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 2 0.08
14 23 0.92
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTTAATAATTTAT
Found at i:26242074 original size:7 final size:7
Alignment explanation
Indices: 26242064--26242095 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
26242054 TAAATTTAAT
26242064 ATTTATA
1 ATTTATA
26242071 ATTTATA
1 ATTTATA
26242078 ATTTATA
1 ATTTATA
26242085 ATTTATA
1 ATTTATA
26242092 ATTT
1 ATTT
26242096 TTTTTCTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTATA
Found at i:26242082 original size:21 final size:21
Alignment explanation
Indices: 26242056--26242095 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
26242046 ATATCTAATA
26242056 AATTTA-ATATTTATAATTTAT
1 AATTTATA-ATTTATAATTTAT
26242077 AATTTATAATTTATAATTT
1 AATTTATAATTTATAATTT
26242096 TTTTTCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATTTATAATTTATAATTTAT
Found at i:26244798 original size:3 final size:3
Alignment explanation
Indices: 26244790--26244831 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
26244780 AAATTAATCG
26244790 TTA TTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26244832 GCACACATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26245491 original size:19 final size:19
Alignment explanation
Indices: 26245460--26245503 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26245450 TTAATTAGGG
* *
26245460 TTAATATTATAAATAATTT
1 TTAATATTATAAAAAATAT
26245479 TTAA-ATTATTAAAAAATAT
1 TTAATATTA-TAAAAAATAT
26245498 TTAATA
1 TTAATA
26245504 AAGAAAGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 16 0.76
20 1 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAATATTATAAAAAATAT
Found at i:26245649 original size:15 final size:17
Alignment explanation
Indices: 26245627--26245701 Score: 69
Period size: 16 Copynumber: 4.9 Consensus size: 17
26245617 ATAAATAATT
26245627 TTTAAATATTATATTAA
1 TTTAAATATTATATTAA
26245644 -TTAATATATT-TA-TAA
1 TTTAA-ATATTATATTAA
26245659 TTTAAATATTATATTAA
1 TTTAAATATTATATTAA
*
26245676 ---AAAT-TT-TA-AAA
1 TTTAAATATTATATTAA
26245687 TTTAAATATTATATT
1 TTTAAATATTATATT
26245702 CAATATTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 20
0.68 0.03 0.29
Matches are distributed among these distances:
11 2 0.04
12 2 0.04
13 2 0.04
14 8 0.17
15 10 0.22
16 14 0.30
17 8 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAATATTATATTAA
Found at i:26245683 original size:28 final size:28
Alignment explanation
Indices: 26245627--26245712 Score: 109
Period size: 28 Copynumber: 2.9 Consensus size: 28
26245617 ATAAATAATT
26245627 TTTAAATATTATATTAATTAATATATTTATAA
1 TTTAAATATTATATTAA--AA-AT-TTTATAA
*
26245659 TTTAAATATTATATTAAAAATTTTAAAA
1 TTTAAATATTATATTAAAAATTTTATAA
* *
26245687 TTTAAATATTATATTCAATATTTTAT
1 TTTAAATATTATATTAAAAATTTTAT
26245713 TATAATTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 29 0.58
29 2 0.04
30 2 0.04
32 17 0.34
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (28 bp):
TTTAAATATTATATTAAAAATTTTATAA
Found at i:26247053 original size:265 final size:267
Alignment explanation
Indices: 26246704--26247310 Score: 1073
Period size: 265 Copynumber: 2.3 Consensus size: 267
26246694 ATACAATTGA
* * **
26246704 ATTATTTAAAATATTTT-TGGACCAAAAA-TACTTTAAATAAACC-TCTTCAA-TTTTTTTAAAA
1 ATTATTTAAGATATTTTCT-GA-CAAAAATTAC-TTAAATAATCCATCGACAATTTTTTTTAAAA
26246765 GATTATTTAAGGCATTCTCTAGTCAAAACCACATTAAATAATCTTTTTCAATATTTTTAGAGGAT
63 GATTATTTAAGGCATTCTCTAGTCAAAACCACATTAAATAATCTTTTTCAATATTTTTAGAGGAT
26246830 ATTTAAGGTTTTTTTAGT-AAAAAAAAGTATTGAACAATCTCATTTAATTTTAATCCCATTAAAA
128 ATTTAAGGTTTTTTTAGTAAAAAAAAAGTATTGAACAATCTCATTTAATTTTAATCCCATTAAAA
*
26246894 AATTGAATGTGATTATTCAATACGTTTTCTGAC-AAAAAAAAACTTTAAAAAATCCTAAAAAAAA
193 AATTAAATGTGATTATTCAATACGTTTTCTGACAAAAAAAAAACTTTAAAAAATCCTAAAAAAAA
26246958 ATTAAATGAG
258 ATTAAATGAG
26246968 ATTATTTAAGATATTTTCTGACAAAAATTACTTAAATAATCCATCGACAATTTTTTTTAAAAGAT
1 ATTATTTAAGATATTTTCTGACAAAAATTACTTAAATAATCCATCGACAATTTTTTTTAAAAGAT
*
26247033 TATTTAAGGTATTCTCTAGTCAAAACCACATTAAATAATCTTTTTCAATATTTTTAGAGGATATT
66 TATTTAAGGCATTCTCTAGTCAAAACCACATTAAATAATCTTTTTCAATATTTTTAGAGGATATT
26247098 TAAGGTTTTTTTAGTAAAAAAAAAGTATTGAACAATCTCATTTAATTTTAATCCCATTAAAAAAT
131 TAAGGTTTTTTTAGTAAAAAAAAAGTATTGAACAATCTCATTTAATTTTAATCCCATTAAAAAAT
*
26247163 TAAATGTGATTATTCAATACGTTTTCTGACAAAAAAAAAACTTTAAACAATCCTAAAAAAAAATT
196 TAAATGTGATTATTCAATACGTTTTCTGACAAAAAAAAAACTTTAAAAAATCCTAAAAAAAAATT
26247228 AAATGAG
261 AAATGAG
26247235 ATTATTTAAGATATTTTCTGACAAAAATTACTTAAATAATCCATCGACAATTTTTTTTTAAAAGA
1 ATTATTTAAGATATTTTCTGACAAAAATTACTTAAATAATCCATCGACAA-TTTTTTTTAAAAGA
26247300 TTATTTAAGGC
65 TTATTTAAGGC
26247311 GTTTTTTGAT
Statistics
Matches: 328, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
263 16 0.05
264 26 0.08
265 94 0.29
266 78 0.24
267 90 0.27
268 24 0.07
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (267 bp):
ATTATTTAAGATATTTTCTGACAAAAATTACTTAAATAATCCATCGACAATTTTTTTTAAAAGAT
TATTTAAGGCATTCTCTAGTCAAAACCACATTAAATAATCTTTTTCAATATTTTTAGAGGATATT
TAAGGTTTTTTTAGTAAAAAAAAAGTATTGAACAATCTCATTTAATTTTAATCCCATTAAAAAAT
TAAATGTGATTATTCAATACGTTTTCTGACAAAAAAAAAACTTTAAAAAATCCTAAAAAAAAATT
AAATGAG
Found at i:26247370 original size:126 final size:128
Alignment explanation
Indices: 26247219--26247565 Score: 390
Period size: 128 Copynumber: 2.7 Consensus size: 128
26247209 ACAATCCTAA
**
26247219 AAAAAAATTAAATGAGATTATTTAAGATATTTTCTGA-CAAAAATTA-CTTAAATAA-T-CCATC
1 AAAAAAATTAAATGAGATTATTTAAGATATTTTCTGATCAAAAAACACCTTAAATAATTCCCAT-
* * * *
26247280 GACAATTTTTTTTTAAAAGATTATTTAAGGCGTTTTTTG-ATAGAAAA-TAGCTTAAATAATCCC
65 -ACAAATTTTTTGTAAAAGATTATTTAAGGCATTTTTTGTA-AGAAAACT-CCTTAAATAATCCC
*
26247343 TT
127 CT
* * *
26247345 AAAAAAATTAAATGAGATTATTTAAGGTATTTTTTGATAAAAAAACACCTTAAATAATTCCCATA
1 AAAAAAATTAAATGAGATTATTTAAGATATTTTCTGATCAAAAAACACCTTAAATAATTCCCATA
* * *
26247410 TAAATTTTTTGTAAATGATTATTTAAGGTATTTTTTGTAAGAAAACTCCTTAAATAATCCCCT
66 CAAATTTTTTGTAAAAGATTATTTAAGGCATTTTTTGTAAGAAAACTCCTTAAATAATCCCCT
* * * * **
26247473 AAAAAAATTGAATGAGATTATTCAAGACATTTTCTGATC-AAAAACACCATAAATAA-TCTCTGT
1 AAAAAAATTAAATGAGATTATTTAAGATATTTTCTGATCAAAAAACACCTTAAATAATTC-CCAT
*
26247536 ACAAA-ATTTT-TAAAAGGATTATTTAAGGCA
65 ACAAATTTTTTGTAAAA-GATTATTTAAGGCA
26247566 CCTTAAAAAA
Statistics
Matches: 187, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
125 4 0.02
126 54 0.29
127 28 0.15
128 94 0.50
129 3 0.02
130 4 0.02
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (128 bp):
AAAAAAATTAAATGAGATTATTTAAGATATTTTCTGATCAAAAAACACCTTAAATAATTCCCATA
CAAATTTTTTGTAAAAGATTATTTAAGGCATTTTTTGTAAGAAAACTCCTTAAATAATCCCCT
Found at i:26247378 original size:62 final size:63
Alignment explanation
Indices: 26247297--26247530 Score: 210
Period size: 62 Copynumber: 3.7 Consensus size: 63
26247287 TTTTTTTAAA
** *
26247297 AGATTATTTAAGGCGTTTTTTGAT-AGAAAATAGCTTAAATAATCCCTTAAAAAAATTAAATG
1 AGATTATTTAAGGTATTTTTTGATAAGAAAATACCTTAAATAATCCCTTAAAAAAATTAAATG
* * ****
26247359 AGATTATTTAAGGTATTTTTTGATAAAAAAACACCTTAAATAATTCCCATATAAATTTTTTGTAA
1 AGATTATTTAAGGTATTTTTTGATAAGAAAATACCTTAAATAA-TCCC-T-TAAA-AAAAT-TAA
26247424 AT-
61 ATG
* *
26247426 -GATTATTTAAGGTATTTTTTG-TAAGAAAACT-CCTTAAATAATCCCCTAAAAAAATTGAATG
1 AGATTATTTAAGGTATTTTTTGATAAGAAAA-TACCTTAAATAATCCCTTAAAAAAATTAAATG
* ** * * * *
26247487 AGATTATTCAAGACATTTTCTGATCA-AAAACACCATAAATAATC
1 AGATTATTTAAGGTATTTTTTGATAAGAAAATACCTTAAATAATC
26247531 TCTGTACAAA
Statistics
Matches: 137, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
60 4 0.03
61 1 0.01
62 58 0.42
63 17 0.12
64 8 0.06
65 18 0.13
66 25 0.18
67 1 0.01
68 5 0.04
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (63 bp):
AGATTATTTAAGGTATTTTTTGATAAGAAAATACCTTAAATAATCCCTTAAAAAAATTAAATG
Found at i:26247852 original size:62 final size:63
Alignment explanation
Indices: 26247608--26247878 Score: 186
Period size: 62 Copynumber: 4.3 Consensus size: 63
26247598 CTTTTATAGC
* * * * * ** *
26247608 AAAAAATACCTTAAATAATTCTCCTT-AATATTTTTAGTGAATTATTTAAGGGATTTTTAGG-T
1 AAAAAATATCTTAAATAATCCTCATTCAA-ATTTTTAGGGTATTATTTAAGACATTTTTTGGCT
* * ** * *
26247670 AAAAGATGTCTTAAATAATCCTCA-TCTAGTTTTTTACGGGGATTATTTAAGACATTTTTT-ACT
1 AAAAAATATCTTAAATAATCCTCATTC-AAATTTTTA-GGGTATTATTTAAGACATTTTTTGGCT
* * * * **
26247733 CAAAAATGTCTTAAATAATCAT--TTAAAATTTTTTTA-CATGATTATTTAA-AGCA-TTTTTGG
1 AAAAAATATCTTAAATAATCCTCATTCAAA--TTTTTAGGGT-ATTATTTAAGA-CATTTTTTGG
26247793 CT
62 CT
*
26247795 AAAAAATATCTTAAATAATCCT-ATTCAAATTTTTAGGGTATTATTTAAGATATTTTTTTGGC-
1 AAAAAATATCTTAAATAATCCTCATTCAAATTTTTAGGGTATTATTTAAGACA-TTTTTTGGCT
**
26247857 AAAAAATCCCTTAAATAATCCT
1 AAAAAATATCTTAAATAATCCT
26247879 GTATAAAAAT
Statistics
Matches: 162, Mismatches: 32, Indels: 30
0.72 0.14 0.13
Matches are distributed among these distances:
61 24 0.15
62 80 0.49
63 58 0.36
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (63 bp):
AAAAAATATCTTAAATAATCCTCATTCAAATTTTTAGGGTATTATTTAAGACATTTTTTGGCT
Found at i:26248027 original size:72 final size:72
Alignment explanation
Indices: 26247910--26248054 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 72
26247900 TAATTTAAGG
* * *
26247910 CATTTTTATATAGAAAATGCCTTAAATAATATCCTTTAATTTTTTTAAGGAGATTATTTAAGGCG
1 CATTTTTATACAGAAAATACCTTAAATAATATCCTTTAATTTTTTTAAGAAGATTATTTAAGGCG
26247975 TTTTTGA
66 TTTTTGA
* * * * *
26247982 CATTTTTATCCAGAAAATATCTTAAATAATCTCTTTTAATTTTTTTAAGAAGATTATTTAAGGTG
1 CATTTTTATACAGAAAATACCTTAAATAATATCCTTTAATTTTTTTAAGAAGATTATTTAAGGCG
26248047 TTTTTGA
66 TTTTTGA
26248054 C
1 C
26248055 TAAAAAATGC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (72 bp):
CATTTTTATACAGAAAATACCTTAAATAATATCCTTTAATTTTTTTAAGAAGATTATTTAAGGCG
TTTTTGA
Found at i:26279788 original size:30 final size:31
Alignment explanation
Indices: 26279732--26279793 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
26279722 ACAAAGTTAG
* *
26279732 TTTCTAAAATTCTTTTCTTCAATACAATTAT
1 TTTCTAAAATTCTTTCCTTCAATACAAGTAT
* *
26279763 TTTCTTAAATTC-TTCCTTTAATACAAGTAT
1 TTTCTAAAATTCTTTCCTTCAATACAAGTAT
26279793 T
1 T
26279794 CTTTCTATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTCTAAAATTCTTTCCTTCAATACAAGTAT
Done.