Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 140 of 160
Found at i:26314313 original size:19 final size:19
Alignment explanation
Indices: 26314289--26314328 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26314279 TTCAATGTAC
26314289 AAATGACACACAGAAGAAT
1 AAATGACACACAGAAGAAT
26314308 AAATGACACACAGAAGAAT
1 AAATGACACACAGAAGAAT
26314327 AA
1 AA
26314329 GGATTTATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.10
Consensus pattern (19 bp):
AAATGACACACAGAAGAAT
Found at i:26334911 original size:29 final size:28
Alignment explanation
Indices: 26334856--26334930 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
26334846 TCATTCAATC
* *
26334856 AAAAATTTAATTTAATGAAAATAAATATTT
1 AAAAATTTAA-TTAAT-TAAATAAATATAT
* *
26334886 AAATATTTAATTGAATTAAATTAATATAT
1 AAAAATTTAATT-AATTAAATAAATATAT
*
26334915 AAAAACTTAATTAATT
1 AAAAATTTAATTAATT
26334931 GTAATAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
28 4 0.11
29 22 0.58
30 12 0.32
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
AAAAATTTAATTAATTAAATAAATATAT
Found at i:26344720 original size:17 final size:17
Alignment explanation
Indices: 26344698--26344733 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26344688 ATCAACTTTT
26344698 TTTTCTTTGAAATCAAG
1 TTTTCTTTGAAATCAAG
26344715 TTTTCTTTGAAATCAAG
1 TTTTCTTTGAAATCAAG
26344732 TT
1 TT
26344734 GACTCTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (17 bp):
TTTTCTTTGAAATCAAG
Found at i:26345435 original size:2 final size:2
Alignment explanation
Indices: 26345428--26345455 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26345418 AACTTCTTTC
26345428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26345456 TCTGAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26346123 original size:31 final size:31
Alignment explanation
Indices: 26346081--26346139 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
26346071 AAATTTATTC
* * * *
26346081 ATTAATTAAATAATATCATCTTATTCACATA
1 ATTAATAAAATAACATAATCATATTCACATA
26346112 ATTAATAAAATAACATAATCATATTCAC
1 ATTAATAAAATAACATAATCATATTCAC
26346140 TTTATCAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (31 bp):
ATTAATAAAATAACATAATCATATTCACATA
Found at i:26346899 original size:15 final size:15
Alignment explanation
Indices: 26346879--26346908 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26346869 TTCTTGTGAG
26346879 TTGTGTTACTCGAAA
1 TTGTGTTACTCGAAA
26346894 TTGTGTTACTCGAAA
1 TTGTGTTACTCGAAA
26346909 GAAGTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
TTGTGTTACTCGAAA
Found at i:26354200 original size:18 final size:18
Alignment explanation
Indices: 26354177--26354214 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26354167 TTCATCGTGG
*
26354177 TTTTTT-ATTTTTATATTA
1 TTTTTTAATTTAT-TATTA
26354195 TTTTTTAATTTATTATTA
1 TTTTTTAATTTATTATTA
26354213 TT
1 TT
26354215 GTTATGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTAATTTATTATTA
Found at i:26357435 original size:24 final size:25
Alignment explanation
Indices: 26357408--26357469 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
26357398 TTATTATTGT
*
26357408 TATTATTTTATTTTATTTTCTA-TA
1 TATTATTTTATTTTATTTTCAACTA
* *
26357432 TATTA-TTTATGTTATTTTCAACTT
1 TATTATTTTATTTTATTTTCAACTA
26357456 TATTATTGTTATTT
1 TATTATT-TTATTT
26357470 ACACATGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 14 0.45
24 11 0.35
25 1 0.03
26 5 0.16
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (25 bp):
TATTATTTTATTTTATTTTCAACTA
Found at i:26358052 original size:84 final size:83
Alignment explanation
Indices: 26357890--26358070 Score: 231
Period size: 84 Copynumber: 2.2 Consensus size: 83
26357880 AAAACCCTTT
*
26357890 CAAACCTTAAAATAAAAAACCTAACCCCCAAACTCAAAATCCAAACCTCAAACCTCTGAACCTTA
1 CAAACCTTAAAATAAAAAACCTAACCCCCAAACTCAAAATCCAAACCTCAAACCTCTGAACATTA
* *
26357955 AGATGAAACCCTAAAATC
66 AAACGAAACCCTAAAATC
* *
26357973 CAAATCCTTAAAATCAAAAACCTAACCCCCAAACTCAAAATCCAAACC-CTAAA-CTTTCGAACA
1 CAAA-CCTTAAAATAAAAAACCTAACCCCCAAACTCAAAATCCAAACCTC-AAACCTCT-GAACA
* **
26358036 TTAAAACGAAATCCTAACTTTC
63 TTAAAACGAAACCCTAA-AATC
*
26358058 CAAACCCTAAAAT
1 CAAACCTTAAAAT
26358071 TCAAGCCCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
83 8 0.09
84 71 0.84
85 6 0.07
ACGTcount: A:0.48, C:0.31, G:0.03, T:0.19
Consensus pattern (83 bp):
CAAACCTTAAAATAAAAAACCTAACCCCCAAACTCAAAATCCAAACCTCAAACCTCTGAACATTA
AAACGAAACCCTAAAATC
Found at i:26358151 original size:15 final size:15
Alignment explanation
Indices: 26358131--26358164 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26358121 ACTCAAACCA
26358131 AAACTCCAAAATCCC
1 AAACTCCAAAATCCC
* *
26358146 AAACTCTAAAATCCT
1 AAACTCCAAAATCCC
26358161 AAAC
1 AAAC
26358165 CTTAAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (15 bp):
AAACTCCAAAATCCC
Found at i:26358170 original size:15 final size:15
Alignment explanation
Indices: 26358138--26358193 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
26358128 CCAAAACTCC
*
26358138 AAAATCCCAAA-CTCT
1 AAAATCCAAAACCT-T
*
26358153 AAAATCCTAAACCTT
1 AAAATCCAAAACCTT
26358168 AAAATCCAAAAACCTT
1 AAAATCC-AAAACCTT
26358184 -AAATCCAAAA
1 AAAATCCAAAA
26358194 TTTTAAAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.11
15 24 0.65
16 9 0.24
ACGTcount: A:0.54, C:0.27, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAATCCAAAACCTT
Found at i:26365774 original size:21 final size:20
Alignment explanation
Indices: 26365727--26365774 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
26365717 GTTTATTAGA
26365727 TGATTATTTAATAATATAAT
1 TGATTATTTAATAATATAAT
* *
26365747 AGTTTA-TTATATAAATATAAT
1 TGATTATTTA-AT-AATATAAT
26365768 TGATTAT
1 TGATTAT
26365775 GAGTAGGGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
19 3 0.14
20 6 0.29
21 12 0.57
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (20 bp):
TGATTATTTAATAATATAAT
Found at i:26366204 original size:17 final size:17
Alignment explanation
Indices: 26366168--26366247 Score: 83
Period size: 17 Copynumber: 4.7 Consensus size: 17
26366158 AAACCCCTCC
*
26366168 CATGGTTTGC-A-AGCA
1 CATGGTTTGCAACAGAA
26366183 CATGGTTTGCAACAGAA
1 CATGGTTTGCAACAGAA
* *
26366200 CATGGTTTCGAAAACAGCA
1 CATGGTTT-G-CAACAGAA
* *
26366219 CATGGTTTGTAACAAAA
1 CATGGTTTGCAACAGAA
26366236 CATGGTTTGCAA
1 CATGGTTTGCAA
26366248 GTTGCAACAG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
15 10 0.19
16 1 0.02
17 27 0.50
18 2 0.04
19 14 0.26
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (17 bp):
CATGGTTTGCAACAGAA
Found at i:26370906 original size:14 final size:15
Alignment explanation
Indices: 26370887--26370915 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26370877 TATGCTACGG
26370887 TACAAA-TTTCCTAA
1 TACAAACTTTCCTAA
26370901 TACAAACTTTCCTAA
1 TACAAACTTTCCTAA
26370916 AACGATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (15 bp):
TACAAACTTTCCTAA
Found at i:26372242 original size:17 final size:17
Alignment explanation
Indices: 26372222--26372255 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26372212 GTATATTTTT
*
26372222 TAAAATTTTTATAAATA
1 TAAAATTTTAATAAATA
26372239 TAAAATTTTAATAAATA
1 TAAAATTTTAATAAATA
26372256 ATATAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTTAATAAATA
Found at i:26372334 original size:33 final size:33
Alignment explanation
Indices: 26372257--26372367 Score: 113
Period size: 32 Copynumber: 3.4 Consensus size: 33
26372247 TAATAAATAA
* * *
26372257 TATAAAATGATTTGAAAA-TTCTTACTTAATATT
1 TATAAAATGATATGAAAATTTTTTATTTAAT-TT
**
26372290 TGA-AAAA-GATATGAAGTTTTTTTATTTAATTT
1 T-ATAAAATGATATGAAAATTTTTTATTTAATTT
*
26372322 TATAAATTGATAT-AAAATTTTTTATTTAATTT
1 TATAAAATGATATGAAAATTTTTTATTTAATTT
*
26372354 TTTAAAATGATATG
1 TATAAAATGATATG
26372368 GGATTTTTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
31 1 0.02
32 41 0.65
33 20 0.32
34 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.50
Consensus pattern (33 bp):
TATAAAATGATATGAAAATTTTTTATTTAATTT
Found at i:26376273 original size:11 final size:11
Alignment explanation
Indices: 26376257--26376281 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26376247 CTAAAATTTT
26376257 TATATTTTATA
1 TATATTTTATA
26376268 TATATTTTATA
1 TATATTTTATA
26376279 TAT
1 TAT
26376282 TTTGATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTTTATA
Found at i:26383441 original size:229 final size:230
Alignment explanation
Indices: 26383021--26383480 Score: 841
Period size: 229 Copynumber: 2.0 Consensus size: 230
26383011 TAGCGGAAGA
*
26383021 CAAATTAGAATGAGTGAAGAACAAGGAGATCTTCTGAAGAGTTGATTTCTACCATTTTTATGAAT
1 CAAATTAGAATGAGTGAAGAACAAGGAGATCTTCTGAAGAGTTGATTTCTACCACTTTTATGAAT
26383086 TTTATTTTAATTTTTTTACTTTCACAATTTGTGCCTAATTTGAATTTTTTTTTCTAATGGTAAAC
66 TTTATTTTAATTTTTTTACTTTCACAATTTGTGCCTAATTTGAATTTTTTTTTCTAATGGTAAAC
* * *
26383151 TGTTTTCTTTTTATTAGAAATGACAATGAAATTTATATGCGGTGAATTTTGATCCGATTTGATTT
131 TGTTTTCTTTTTATTAGAAATGACAACGAAATTTATATGCGATAAATTTTGATCCGATTTGATTT
26383216 TATAAAATTA-TTTTTAAAAAATTTAATTTCGAGT
196 TATAAAATTATTTTTTAAAAAATTTAATTTCGAGT
* *
26383250 CAAATTAGAATGAGTGAAGAACGATGAGATCTTCTGAAGAGTTGATTTCTACCACTTTTATGAAT
1 CAAATTAGAATGAGTGAAGAACAAGGAGATCTTCTGAAGAGTTGATTTCTACCACTTTTATGAAT
26383315 TTTATTTTAATTTTTTTACTTTCACAATTTGTGCCTAATTTGAATTTTTTTTTCTAATGGTAAAC
66 TTTATTTTAATTTTTTTACTTTCACAATTTGTGCCTAATTTGAATTTTTTTTTCTAATGGTAAAC
* *
26383380 TGTTTTCTTTTTATTAGAAATGACAACGAAATTTATATGCGATAAATTTTTATCTGATTTGATTT
131 TGTTTTCTTTTTATTAGAAATGACAACGAAATTTATATGCGATAAATTTTGATCCGATTTGATTT
26383445 TATAAAATTATTTTTTAAAAAATTTAATTTCGAGT
196 TATAAAATTATTTTTTAAAAAATTTAATTTCGAGT
26383480 C
1 C
26383481 GGATAATAAT
Statistics
Matches: 222, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
229 197 0.89
230 25 0.11
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (230 bp):
CAAATTAGAATGAGTGAAGAACAAGGAGATCTTCTGAAGAGTTGATTTCTACCACTTTTATGAAT
TTTATTTTAATTTTTTTACTTTCACAATTTGTGCCTAATTTGAATTTTTTTTTCTAATGGTAAAC
TGTTTTCTTTTTATTAGAAATGACAACGAAATTTATATGCGATAAATTTTGATCCGATTTGATTT
TATAAAATTATTTTTTAAAAAATTTAATTTCGAGT
Found at i:26389193 original size:22 final size:22
Alignment explanation
Indices: 26389165--26389207 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26389155 TTATAATAAA
26389165 TAAATAAATATAAATTTTTATT
1 TAAATAAATATAAATTTTTATT
* * *
26389187 TAAATAATTATGATTTTTTAT
1 TAAATAAATATAAATTTTTAT
26389208 ATAATTATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TAAATAAATATAAATTTTTATT
Found at i:26389206 original size:18 final size:19
Alignment explanation
Indices: 26389185--26389229 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
26389175 TAAATTTTTA
26389185 TTTAAATAATTATGA-TTT
1 TTTAAATAATTATGACTTT
*
26389203 TTTATATAATTATGACTTT
1 TTTAAATAATTATGACTTT
26389222 TATTAAAT
1 T-TTAAAT
26389230 CTATTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 14 0.61
19 4 0.17
20 5 0.22
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (19 bp):
TTTAAATAATTATGACTTT
Found at i:26411303 original size:4 final size:4
Alignment explanation
Indices: 26411294--26411319 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
26411284 TCAAGGGAGT
26411294 GAAA GAAA GAAA GAAA GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GA
26411320 GAAGGAACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:26411867 original size:40 final size:40
Alignment explanation
Indices: 26411801--26411898 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
26411791 AAAAAATTAT
* * * *
26411801 TTATAATAAATT-AATAATTAATAATTTTTATTTAAATAG
1 TTATAATAATTTGAATAATAAAAAATTTTTATTTAAATAA
* *
26411840 TTATGATAATTTGTATAATAAAAAATTTTTATTTAAATAA
1 TTATAATAATTTGAATAATAAAAAATTTTTATTTAAATAA
*
26411880 TTATAATTATTTGAATAAT
1 TTATAATAATTTGAATAAT
26411899 TATAAAAACT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.20
40 39 0.80
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (40 bp):
TTATAATAATTTGAATAATAAAAAATTTTTATTTAAATAA
Found at i:26411891 original size:18 final size:18
Alignment explanation
Indices: 26411868--26411903 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26411858 TAAAAAATTT
26411868 TTATTTAAATAATTATAA
1 TTATTTAAATAATTATAA
*
26411886 TTATTTGAATAATTATAA
1 TTATTTAAATAATTATAA
26411904 AAACTTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TTATTTAAATAATTATAA
Found at i:26411995 original size:18 final size:19
Alignment explanation
Indices: 26411963--26412012 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
26411953 AAATTTTTTC
*
26411963 AAAATAAAT-AATATTT-A
1 AAAATTAATAAATATTTAA
* *
26411980 ATAATTTATAAATATTTAA
1 AAAATTAATAAATATTTAA
26411999 AAAATTAATAAATA
1 AAAATTAATAAATA
26412013 AAAAATTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 6 0.23
18 7 0.27
19 13 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTAATAAATATTTAA
Found at i:26414290 original size:20 final size:18
Alignment explanation
Indices: 26414254--26414297 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
26414244 ATTATTCATA
26414254 AAGGTCATGATTATATAT
1 AAGGTCATGATTATATAT
26414272 AAGGTCATGATTATATAT
1 AAGGTCATGATTATATAT
26414290 AAGGTCAT
1 AAGGTCAT
26414298 AATCATTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (18 bp):
AAGGTCATGATTATATAT
Found at i:26420457 original size:333 final size:332
Alignment explanation
Indices: 26419839--26421784 Score: 2444
Period size: 333 Copynumber: 5.9 Consensus size: 332
26419829 ATAAATTATT
* ** * ** * * * * *
26419839 GAAGGCGGCTTATAATAAAAGGCGCCTTTAATAGTCCAAAAAAATTTTGTT-GAAAAAATATTAA
1 GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATTAGGAAAATTATTGA
* *
26419903 AGGCTTTGTTATCTGAAACTGCA--TTCAGTAATTATATACAAACTATGATAGAAATTATTAAAG
66 AGGCGTTGTTATCTGAAA-T-CACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAG
* * * *
26419966 GCATCTATCTTAAATATATGCCTTCAATAACAGTGTTACAATATATGCAGTGATATATAGAAGGT
129 GCATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGT
* * * *
26420031 ATTTTACAGTAGAAGACGCCTTTAATAATTCTCAAAATATTTAGTGAAAAAATTTTGGAGGCGTC
194 ATTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAGCGTC
* * *
26420096 TGTTATTAACAAACGCCTTCAATAATTGAAGGCGTCTTTTCTAATACTCGTCTTCGATTACCATC
259 TGTTATTAACAAACGCCTTCAGTAATTGAAGGTGACTTTTCTAATACTCG-CTTCGATTACCATC
26420161 GTGGTATATC
323 GTGGTATATC
* * *** * *
26420171 GAATGTGGCTTATAATAAAAGATGTCTTTAATAATCCTGAAAATTTTTATTAGGAAAATTAATGA
1 GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATTAGGAAAATTATTGA
* * * *
26420236 AGGCGTTGTTATATGAAATCACCTTTAGTAATTATATACAAACTGTGATTGAAATTATTAAAGGT
66 AGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAGGC
* * * *
26420301 GTCTATCTTAAATATACGCCTTCAATAACAATGTTACAATATGTATAGCG-TATATAAAAGGTAT
131 ATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGTAT
*
26420365 TTTACAGTAGAAGATGCCTTTAATAATTTTTAAAATATTTAGTGAGAAAAATTTTGAAAGCGTCT
196 TTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGA-AAAAATTTTGAAAGCGTCT
* *
26420430 GTTATTAACAAACGCCTTCAGTAATTGAAGG-CACTTTTTCTAATACTCACCTTCGATTACCATC
260 GTTATTAACAAACGCCTTCAGTAATTGAAGGTGAC-TTTTCTAATACTC-GCTTCGATTACCATC
*
26420494 GTGGTATATT
323 GTGGTATATC
* * ** *
26420504 GAAGGCGGCTTATAAGAAAATATGACTTTAATAATCCTGAAAACTTTTATTCA-AAAAATTATTG
1 GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATT-AGGAAAATTATTG
* ** *
26420568 AAGGC---GTTATCTGAAATAATTTTTAGTAATTATATACAAACTGTGATAGAAATTATTAAAGG
65 AAGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAGG
* * * * *
26420630 CATCTATCTTAAATATACACATTCAATAACAGTGTTACAATATGTGTAGTGGTATATAGAAGATA
130 CATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGTA
* ** * *
26420695 TTTTACAGTAGAAGATGCCTTTAATAATTCCTAAAATATTTAATGAAAAATTTTTGAAAGCGTCT
195 TTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAGCGTCT
* * *
26420760 GTTATTAACAAATGCCTTCAGTAATTGAATGTGCCTTTTCTAATACTCGCATTCGATTACCATCG
260 GTTATTAACAAACGCCTTCAGTAATTGAAGGTGACTTTTCTAATACTCGC-TTCGATTACCATCG
26420825 TGGTATATC
324 TGGTATATC
* *
26420834 AAAGGCGGCTTATAATAAAAAAC-ACATTTAATAATCCTTGAAAACTTTTATTAGGAAAATTATT
1 GAAGGCGGCTTATAATAAAAGACAAC-TTTAATAATCC-TGAAAACTTTTATTAGGAAAATTATT
* * * * * * *
26420898 GAAGGCATTGTTATTTGAAACCGCATTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAG
64 GAAGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAG
* ** * * *
26420963 GCATTTATCTTAAATATACGTATTTAATAACAATATTACAATATGTGTAGCGATATATAGAAGGT
129 GCATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGT
*** * * *
26421028 ATTTTACAGTAGAAGACGCCTTTAATAATTACCAAAATATTTAGTGAGAAAATTTTGAAGGCGTT
194 ATTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAGCGTC
* ** * * *
26421093 TATTATTAACAAATACTTTCAGTAATTGAAGGT-ACCTTTTCTAATACTTGCCTTTGATTACCAT
259 TGTTATTAACAAACGCCTTCAGTAATTGAAGGTGA-CTTTTCTAATACTCG-CTTCGATTACCAT
*
26421157 CGTGGTATATT
322 CGTGGTATATC
* * * * * ** *
26421168 AAAGGCAGCTTATAATAAAAGACACCCTTAATAATCCTAAAAACTTTTATTAAAAAAATTATTAA
1 GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATTAGGAAAATTATTGA
** * *
26421233 AGGCGTTGTTATCTGAAATCGGCTTTAGTAATTATATACAAATTATGTTA-AGAATTATTAAAGG
66 AGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGA-AATTATTAAAGG
* *
26421297 CATCTATCTTAAACATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGCA
130 CATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGTA
* * * * * **
26421362 TTTTACAATAGAAGACGTCTTAAATAATTTTTAAAATATTTAGTGAAAAATTTTTGAAGGTATCT
195 TTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAGCGTCT
* *
26421427 GTTATTAACAAATGCCTTTAGTAATTGAAGGTGACTTTTCTAATACTCGCATTCGATTACCATCG
260 GTTATTAACAAACGCCTTCAGTAATTGAAGGTGACTTTTCTAATACTCGC-TTCGATTACCATCG
26421492 TGGTATATC
324 TGGTATATC
* * * *
26421501 GAAGGTGGCTTATAATAAAAAACATCTTTAATAATCCTAAAAACTTTTATTAGGAAAATTATTGA
1 GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATTAGGAAAATTATTGA
* * *
26421566 AGGCGTTGTTATCTGAAATTACCTTCAGTAATTATATACAAACTATGATAGAAATTATTAAAGGT
66 AGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAGGC
* * * *
26421631 GTCTATCTTAAATATACGCTTTCAATAATAGTGTTATAATATGTGTAGCGATATATAGAAGGTAT
131 ATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGTAT
* ** * * *
26421696 TTTACAGTAGAAAATACCTTTAATAATTTTTAAAATATTTAGTGAGAAAATTTTG-AAGTCATTT
196 TTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAG-CGTCT
*
26421760 GTT-TCTAACAAACGCCTTCTGTAAT
260 GTTAT-TAACAAACGCCTTCAGTAAT
26421785 GGATTACTAA
Statistics
Matches: 1403, Mismatches: 186, Indels: 49
0.86 0.11 0.03
Matches are distributed among these distances:
329 3 0.00
330 209 0.15
331 86 0.06
332 103 0.07
333 740 0.53
334 260 0.19
335 2 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (332 bp):
GAAGGCGGCTTATAATAAAAGACAACTTTAATAATCCTGAAAACTTTTATTAGGAAAATTATTGA
AGGCGTTGTTATCTGAAATCACCTTTAGTAATTATATACAAACTATGATAGAAATTATTAAAGGC
ATCTATCTTAAATATACGCCTTCAATAACAGTGTTACAATATGTGTAGCGATATATAGAAGGTAT
TTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATATTTAGTGAAAAAATTTTGAAAGCGTCTG
TTATTAACAAACGCCTTCAGTAATTGAAGGTGACTTTTCTAATACTCGCTTCGATTACCATCGTG
GTATATC
Found at i:26427671 original size:20 final size:20
Alignment explanation
Indices: 26427646--26427685 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26427636 AAATATAGTC
26427646 ACACAAGTGGATCAAAAAGT
1 ACACAAGTGGATCAAAAAGT
26427666 ACACAAGTGGATCAAAAAGT
1 ACACAAGTGGATCAAAAAGT
26427686 TTTGTAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.20, T:0.15
Consensus pattern (20 bp):
ACACAAGTGGATCAAAAAGT
Found at i:26435702 original size:14 final size:14
Alignment explanation
Indices: 26435683--26435712 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26435673 CTTGGACCCA
26435683 CGAACCTAGAACCT
1 CGAACCTAGAACCT
*
26435697 CGAACCTGGAACCT
1 CGAACCTAGAACCT
26435711 CG
1 CG
26435713 CTCTGATACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.20, T:0.13
Consensus pattern (14 bp):
CGAACCTAGAACCT
Found at i:26438290 original size:3 final size:3
Alignment explanation
Indices: 26438282--26438309 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26438272 AAGGAGTTGA
26438282 AGG AGG AGG AGG AGG AGG AGG AGG AGG A
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG A
26438310 AAGGTTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:26440663 original size:17 final size:18
Alignment explanation
Indices: 26440631--26440668 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26440621 TTTTCATTTA
26440631 AAAAATTTATAAATT-AT
1 AAAAATTTATAAATTAAT
**
26440648 AAAAATTTATTTATTAAT
1 AAAAATTTATAAATTAAT
26440666 AAA
1 AAA
26440669 TTAGATTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAAATTTATAAATTAAT
Found at i:26441338 original size:20 final size:20
Alignment explanation
Indices: 26441310--26441348 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26441300 GCACTTATGA
*
26441310 TATAATATAATTGAATTTAT
1 TATAATATAATTAAATTTAT
*
26441330 TATATTATAATTAAATTTA
1 TATAATATAATTAAATTTA
26441349 AATATTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TATAATATAATTAAATTTAT
Found at i:26441355 original size:19 final size:20
Alignment explanation
Indices: 26441315--26441355 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26441305 TATGATATAA
* *
26441315 TATAATTGAATTTATTATAT
1 TATAATTAAATTTATAATAT
26441335 TATAATTAAATTTA-AATAT
1 TATAATTAAATTTATAATAT
26441354 TA
1 TA
26441356 ATTTTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATAATTAAATTTATAATAT
Found at i:26441377 original size:14 final size:13
Alignment explanation
Indices: 26441357--26441402 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
26441347 TAAATATTAA
26441357 TTTTAATAAATTT
1 TTTTAATAAATTT
*
26441370 TATTTAATATAAATT
1 T-TTTAATA-AATTT
26441385 TTTT-AT-AATTT
1 TTTTAATAAATTT
26441396 TTTTAAT
1 TTTTAAT
26441403 CATAATTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
11 8 0.29
12 2 0.07
13 3 0.11
14 10 0.36
15 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTAATAAATTT
Found at i:26441378 original size:26 final size:26
Alignment explanation
Indices: 26441335--26441407 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
26441325 TTTATTATAT
** *
26441335 TATAATTAAATTTAAATATTAATTTTA
1 TATAATTTTATTT-AATATAAATTTTA
*
26441362 -ATAAATTTTATTTAATATAAATTTTT
1 TAT-AATTTTATTTAATATAAATTTTA
26441388 TATAATTTT-TTTAATCATAA
1 TATAATTTTATTTAAT-ATAA
26441408 TTATGATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 6 0.15
26 23 0.59
27 10 0.26
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAATTTTATTTAATATAAATTTTA
Found at i:26441424 original size:23 final size:23
Alignment explanation
Indices: 26441389--26441441 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
26441379 TAAATTTTTT
* *
26441389 ATAATTTTTTTAATCATAATTATG
1 ATAA-TTTTTTAATCATAATAATA
*
26441413 ATAATTTTTTAATTATAATAATA
1 ATAATTTTTTAATCATAATAATA
26441436 ATAATT
1 ATAATT
26441442 ATTATTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
ATAATTTTTTAATCATAATAATA
Found at i:26444856 original size:13 final size:13
Alignment explanation
Indices: 26444838--26444862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26444828 AATTGGTATT
26444838 TTTATTTATTTTA
1 TTTATTTATTTTA
26444851 TTTATTTATTTT
1 TTTATTTATTTT
26444863 TAATTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:26444878 original size:23 final size:23
Alignment explanation
Indices: 26444834--26444880 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26444824 AAAAAATTGG
* *
26444834 TATTTTTATTTATTTTATTTATT
1 TATTTTTATTTATTTGAGTTATT
26444857 TATTTTTAATTT-TTTGAGTTATT
1 TATTTTT-ATTTATTTGAGTTATT
26444880 T
1 T
26444881 TTAGTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.74
Consensus pattern (23 bp):
TATTTTTATTTATTTGAGTTATT
Found at i:26444944 original size:7 final size:7
Alignment explanation
Indices: 26444917--26444954 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
26444907 TTGTTAAAAT
26444917 AAATATA
1 AAATATA
*
26444924 ATAT-TA
1 AAATATA
*
26444930 AAAAATA
1 AAATATA
26444937 AAATATA
1 AAATATA
26444944 AAATATA
1 AAATATA
26444951 AAAT
1 AAAT
26444955 TTAGAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
6 4 0.15
7 22 0.85
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATATA
Found at i:26444953 original size:20 final size:19
Alignment explanation
Indices: 26444912--26444953 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
26444902 AGGATTTGTT
*
26444912 AAAATAAATATAATATTAA
1 AAAATAAATATAAAATTAA
26444931 AAAATAAAATATAAAATATAA
1 AAAAT-AAATATAAAAT-TAA
26444952 AA
1 AA
26444954 TTTAGAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATAAATATAAAATTAA
Found at i:26445139 original size:126 final size:125
Alignment explanation
Indices: 26445031--26445485 Score: 478
Period size: 127 Copynumber: 3.6 Consensus size: 125
26445021 ATCATAAGTT
**
26445031 GTGATTTTATTAAAAATATTTGCACAGAGAAATTTTTTAAAATATTTTAAAAGTGTTAGAAATAT
1 GTGATTTTAAAAAAAATATTTGCACA-A-AAATTTTTTAAAATATTTTAAAAGTGTTAGAAATAT
* *
26445096 TTCAAAAATTTTCAAGCATAAAAAAAAGCAAACATCATTAATAAAAAATAAAGTCACCAATG
64 TTTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCATTAATAAAAAATAAAATCACCAATG
* ** *
26445158 GTGATTTAAAAAAAATATATTTATAC-AAAGTTTTTTAAAAAATATTTTAAAAGTGTTAGAAATA
1 GTGATTTTAAAAAAA-ATATTTGCACAAAAATTTTTT--AAAATATTTTAAAAGTGTTAGAAATA
* * *
26445222 TTTTAGAAATTTTCAAGCATAAAAAAAGGCAAACATCATTAATAAAAAATAAAGTCACCAATG
63 TTTTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCATTAATAAAAAATAAAATCACCAATG
* * ** ** * *
26445285 GTGATTTAAAAAAAAAGATTTATACAAATTTTTTTTTTAAATATTTAAAAAGTGTTAGAAATATT
1 GTGATTTTAAAAAAAATATTTGCACAAA-AATTTTTTAAAATATTTTAAAAGTGTTAGAAATATT
* * * * *
26445350 TTAAAAATTTT-AA--A-ACATAAAAGCAAA-AT-ATTATTAATAATTATAAAATCA-CAAGTA
65 TTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCATTAATAA-AA-AATAAAATCACCAA-TG
** * * *
26445407 GTGATTTTATTAAAAATATTTGCACAAGGAAATTTTTTAAAATATTCTAAAGGTGTTAGAAAT-G
1 GTGATTTTAAAAAAAATATTTGCACAA--AAATTTTTTAAAATATTTTAAAAGTGTTAGAAATAT
*
26445471 TTTAGAAATTTTCAA
64 TTTAAAAATTTTCAA
26445486 ATAAAATAAA
Statistics
Matches: 281, Mismatches: 36, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
120 7 0.02
121 7 0.02
122 51 0.18
123 30 0.11
124 1 0.00
125 10 0.04
126 46 0.16
127 115 0.41
128 14 0.05
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.35
Consensus pattern (125 bp):
GTGATTTTAAAAAAAATATTTGCACAAAAATTTTTTAAAATATTTTAAAAGTGTTAGAAATATTT
TAAAAATTTTCAAGCATAAAAAAAAGCAAACATCATTAATAAAAAATAAAATCACCAATG
Found at i:26445207 original size:127 final size:126
Alignment explanation
Indices: 26445069--26445371 Score: 498
Period size: 127 Copynumber: 2.4 Consensus size: 126
26445059 GAAATTTTTT
*
26445069 AAAATATTTTAAAAGTGTTAGAAATATTTCAAAAATTTTCAAGCATAAAAAAAAGCAAACATCAT
1 AAAATATTTTAAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCAT
*
26445134 TAATAAAAAATAAAGTCACCAATGGTGATTTAAAAAAAATATATTTATACAAAGTTTTTTAA
66 TAATAAAAAATAAAGTCACCAATGGTGATTTAAAAAAAA-AGATTTATACAAAGTTTTTTAA
* *
26445196 AAAATATTTTAAAAGTGTTAGAAATATTTTAGAAATTTTCAAGCATAAAAAAAGGCAAACATCAT
1 AAAATATTTTAAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCAT
* **
26445261 TAATAAAAAATAAAGTCACCAATGGTGATTTAAAAAAAAAGATTTATACAAATTTTTTTTT
66 TAATAAAAAATAAAGTCACCAATGGTGATTTAAAAAAAAAGATTTATACAAAGTTTTTTAA
* * * *
26445322 TAAATATTTAAAAAGTGTTAGAAATATTTTAAAAATTTTAAAACATAAAA
1 AAAATATTTTAAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAAAA
26445372 GCAAAATATT
Statistics
Matches: 164, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
126 63 0.38
127 101 0.62
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.33
Consensus pattern (126 bp):
AAAATATTTTAAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAAAAAAAAGCAAACATCAT
TAATAAAAAATAAAGTCACCAATGGTGATTTAAAAAAAAAGATTTATACAAAGTTTTTTAA
Found at i:26446018 original size:16 final size:16
Alignment explanation
Indices: 26445997--26446058 Score: 60
Period size: 16 Copynumber: 4.0 Consensus size: 16
26445987 TCGAAATTTT
*
26445997 AATATTCAAATAGTAA
1 AATATTCAAATAATAA
26446013 AATATTCAAATAATAA
1 AATATTCAAATAATAA
*
26446029 AA-A-T-AAAAAATAAA
1 AATATTCAAATAAT-AA
26446043 AATAATT-AAATAATAA
1 AAT-ATTCAAATAATAA
26446059 GTAAAAGACT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 6 0.15
14 5 0.13
15 1 0.03
16 20 0.51
17 7 0.18
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (16 bp):
AATATTCAAATAATAA
Found at i:26457633 original size:42 final size:42
Alignment explanation
Indices: 26457587--26457693 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
26457577 AAAGTTGCCA
26457587 AGCCTTTACTTAGAGAAGTCTTTTAAATTTTTAAAACTATTG
1 AGCCTTTACTTAGAGAAGTCTTTTAAATTTTTAAAACTATTG
* * * * ** *
26457629 AGCCTCTACCTAAAGGAGTCTTTTAAATTTTTAAAGTTGTTG
1 AGCCTTTACTTAGAGAAGTCTTTTAAATTTTTAAAACTATTG
*
26457671 AG-CTTCTGCTTAGAGAAGT-TTTT
1 AGCCTT-TACTTAGAGAAGTCTTTT
26457694 CAAGTTGTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 6 0.12
42 46 0.88
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (42 bp):
AGCCTTTACTTAGAGAAGTCTTTTAAATTTTTAAAACTATTG
Found at i:26457716 original size:160 final size:162
Alignment explanation
Indices: 26457487--26457843 Score: 400
Period size: 160 Copynumber: 2.2 Consensus size: 162
26457477 GAGTATAATA
* * * * *
26457487 TTTTAAATCTTTCAAAGTTATGGAGCCTT-TGCTTAGAGGAGTTTTTTAAAGTTGTTGAATCTCT
1 TTTTAAATCTTTTAAAGTTGTTGAG-CTTCTGCTTAGAGAAGTTTTTTAAAGTTGTTGAACCTCT
* * *
26457551 GCTTAGAGGAACATTTTAAATCTTTTAAAGTTGCCAAGCCTTTACTTAGAGAAGTCTTTT-AAAT
65 GCTTAGAGGAACATTTTAAATATTTTAAAGTCGCCAAGCCTCTACTTAGAGAAGT-TTTTAAAAT
* *
26457615 TTTTAAAACTATTGAGCCTCTACCTA-AAGGAGTC
129 TTTCAAAACTATTGAGCCTCTACCTAGAA-AAGTC
* * *
26457649 TTTTAAAT-TTTTAAAGTTGTTGAGCTTCTGCTTAGAGAAG-TTTTTCAAGTTGTTGAGCCTTTG
1 TTTTAAATCTTTTAAAGTTGTTGAGCTTCTGCTTAGAGAAGTTTTTTAAAGTTGTTGAACCTCTG
* * * * * **
26457712 CTTAGATGAGCCTTTTAAATATTTTAAAGTCGTCGAGCCTCTACTTAGAGGTGTTTTTAAAATTT
66 CTTAGAGGAACATTTTAAATATTTTAAAGTCGCCAAGCCTCTACTTAGAGAAGTTTTTAAAATTT
** * * *
26457777 TCAAAGTTGTTGAGTCTCTACTTAGAAAAGTC
131 TCAAAACTATTGAGCCTCTACCTAGAAAAGTC
* * *
26457809 TTTAAAATCTTTTAAAGTTGTTGAGCCTCTACTTA
1 TTTTAAATCTTTTAAAGTTGTTGAGCTTCTGCTTA
26457844 TAGGAGCTTT
Statistics
Matches: 163, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
159 4 0.02
160 101 0.62
161 50 0.31
162 8 0.05
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.41
Consensus pattern (162 bp):
TTTTAAATCTTTTAAAGTTGTTGAGCTTCTGCTTAGAGAAGTTTTTTAAAGTTGTTGAACCTCTG
CTTAGAGGAACATTTTAAATATTTTAAAGTCGCCAAGCCTCTACTTAGAGAAGTTTTTAAAATTT
TCAAAACTATTGAGCCTCTACCTAGAAAAGTC
Found at i:26457840 original size:43 final size:42
Alignment explanation
Indices: 26457689--26457843 Score: 166
Period size: 43 Copynumber: 3.6 Consensus size: 42
26457679 CTTAGAGAAG
* * * * * *
26457689 TTTTTCAAGTTGTTGAGCCTTTGCTTAGATGAGCCTTTTAAA
1 TTTTTAAAGTTGTTGAGCCTCTACTTAGAAGAGTCTTTAAAA
* * * * *
26457731 TATTTTAAAGTCGTCGAGCCTCTACTTAGAGGTGTTTTTAAAA
1 T-TTTTAAAGTTGTTGAGCCTCTACTTAGAAGAGTCTTTAAAA
* * *
26457774 TTTTCAAAGTTGTTGAGTCTCTACTTAGAAAAGTCTTTAAAA
1 TTTTTAAAGTTGTTGAGCCTCTACTTAGAAGAGTCTTTAAAA
26457816 TCTTTTAAAGTTGTTGAGCCTCTACTTA
1 T-TTTTAAAGTTGTTGAGCCTCTACTTA
26457844 TAGGAGCTTT
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
42 35 0.38
43 56 0.62
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (42 bp):
TTTTTAAAGTTGTTGAGCCTCTACTTAGAAGAGTCTTTAAAA
Found at i:26458689 original size:19 final size:20
Alignment explanation
Indices: 26458665--26458702 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26458655 GAAAAATAGG
*
26458665 TATTTTTTATTTTT-TATTC
1 TATTTTTAATTTTTGTATTC
26458684 TATTTTTAATTTTTGTATT
1 TATTTTTAATTTTTGTATT
26458703 ATTTTAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
TATTTTTAATTTTTGTATTC
Found at i:26458767 original size:15 final size:15
Alignment explanation
Indices: 26458743--26458772 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26458733 ACGTTAAAAT
*
26458743 AAATATAATAATAAA
1 AAATAAAATAATAAA
26458758 AAATAAAATAATAAA
1 AAATAAAATAATAAA
26458773 TATGAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATAAAATAATAAA
Found at i:26459248 original size:122 final size:121
Alignment explanation
Indices: 26458828--26459343 Score: 408
Period size: 122 Copynumber: 4.2 Consensus size: 121
26458818 TAAAATAACT
* * * ** * *
26458828 ATAAAATCACAAGTGATGATTTTATTAAAAATACTTGCA-TGAGAAAATTTTCTAAAATATTTTA
1 ATAAAATCACAAGTGGTGATTTTATT-AAAATATTTACACAAAG-AAATTTTTTAAAATATTCTA
* * * * *
26458892 AGAGTCTTAGAAATA-TTTAAAAAATTTTCAAGCATAAAAAAAAAAACAAACATCATTAATAAAA
64 AAAGTATTAGAAATATTTTAGAAAA-TTT-AAACAT----AAAAAAA-AAACATTATTAATAAAA
* * *
26458956 ATAAAGTCATAAGTGGTGATTTTATTAAAAAAATATTTACACAAAGAAATTTTTTAAAATATTTT
1 ATAAAATCACAAGTGGTGATTTTATT---AAAATATTTACACAAAGAAATTTTTTAAAATATTCT
* * * **
26459021 AAAAGTGTTAGAAATATTTTAGAAAATTTCAAACATAAAAACAAAATATTATTAATAACT
63 AAAAGTATTAGAAATATTTTAGAAAATTT-AAACATAAAAAAAAAACATTATTAATAAAA
* * * *
26459081 ATAAAATCACAAGTGGTGGTTTTATTTAAAATATTTACATAAAGAAGTTTTCTAAAATATTCTAA
1 ATAAAATCACAAGTGGTGATTTTA-TTAAAATATTTACACAAAGAAATTTTTTAAAATATTCTAA
* * * **** *
26459146 AAGTATTAGAAGTGTTTTAGAATATTT-TTTTTAAAAAAAAAACATTATTACTAAAAA
65 AAGTATTAGAAATATTTTAGAAAATTTAAACATAAAAAAAAAACATTATTAAT-AAAA
* *
26459203 ATAAAATCACCAA-TGGTGATTTTATTACAAATATTTCCACAAAGAAATTTTTTAAAATATTCCA
1 ATAAAATCA-CAAGTGGTGATTTTATTA-AAATATTTACACAAAGAAATTTTTTAAAATATTCTA
* * ** *
26459267 AAA-AAGTTAGAAATATTTT--ATAATTT-----TTCAAGAAAAACATTATTAATAAAAA
64 AAAGTA-TTAGAAATATTTTAGAAAATTTAAACATAAAAAAAAAACATTATTAAT-AAAA
* *
26459319 ATAAAGTCACAAGTAGTGATTTTAT
1 ATAAAATCACAAGTGGTGATTTTAT
26459344 CGAAATTTCT
Statistics
Matches: 324, Mismatches: 54, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
115 3 0.01
116 41 0.13
120 5 0.02
121 22 0.07
122 66 0.20
123 60 0.19
125 34 0.10
126 8 0.02
128 23 0.07
130 52 0.16
131 10 0.03
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.35
Consensus pattern (121 bp):
ATAAAATCACAAGTGGTGATTTTATTAAAATATTTACACAAAGAAATTTTTTAAAATATTCTAAA
AGTATTAGAAATATTTTAGAAAATTTAAACATAAAAAAAAAACATTATTAATAAAA
Found at i:26465433 original size:134 final size:130
Alignment explanation
Indices: 26465197--26465436 Score: 329
Period size: 134 Copynumber: 1.8 Consensus size: 130
26465187 TTGAAAAAAA
* *
26465197 ATGTTATAATATTAAGTAAAAATATTTTAGATTTTTTGTATATATAATGTATTTTAAATTTTTAG
1 ATGTTATAATATTAAGTAAAAATATTTTAGATTTTTTATATATATAATGTATTTTAAATTTTCAG
* * * *
26465262 GTGAAGGCAGCTGAATGTTTGATATATGGTAACCAAATGTCCTAAATTTATAATGTTAAGATGAT
66 GTGAAGGCAGATGAATGTTTGATAAATAGCAACCAAATGTCCTAAATTTATAATGTTAAGATGAT
*
26465327 ATGTTATAATATTAAGTAAAAATATTTTAGATTATATATATATATATATGATGTATTTTAAATTT
1 ATGTTATAATATTAAGTAAAAATATTTTAGATT-T-T-T-TATATATATAATGTATTTTAAATTT
* * **
26465392 TCGGGTGAAGGCA-ATGAAATGTTTGGTAAATAGCAGTCAAATGTC
62 TCAGGTGAAGGCAGATG-AATGTTTGATAAATAGCAACCAAATGTC
26465437 TTAACTACAC
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
130 33 0.35
131 1 0.01
132 1 0.01
133 3 0.03
134 56 0.60
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.42
Consensus pattern (130 bp):
ATGTTATAATATTAAGTAAAAATATTTTAGATTTTTTATATATATAATGTATTTTAAATTTTCAG
GTGAAGGCAGATGAATGTTTGATAAATAGCAACCAAATGTCCTAAATTTATAATGTTAAGATGAT
Found at i:26470640 original size:27 final size:28
Alignment explanation
Indices: 26470609--26470673 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 28
26470599 CCACCAATTA
26470609 AAAAACACATACAAAATGCAAATATAAG
1 AAAAACACATACAAAATGCAAATATAAG
26470637 AAAACTCACACACATACAAAATGCAAATATAAG
1 -AAA---A-ACACATACAAAATGCAAATATAAG
26470670 AAAA
1 AAAA
26470674 CCCATTACAG
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
29 4 0.12
32 4 0.12
33 24 0.75
ACGTcount: A:0.63, C:0.17, G:0.06, T:0.14
Consensus pattern (28 bp):
AAAAACACATACAAAATGCAAATATAAG
Found at i:26471235 original size:2 final size:2
Alignment explanation
Indices: 26471228--26471260 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26471218 CTCGAACCAA
26471228 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26471261 ATGGACATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26482798 original size:6 final size:6
Alignment explanation
Indices: 26482787--26482814 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26482777 GTATGTGCAA
26482787 GCACCT GCACCT GCACCT GCACCT GCAC
1 GCACCT GCACCT GCACCT GCACCT GCAC
26482815 ACATATGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.50, G:0.18, T:0.14
Consensus pattern (6 bp):
GCACCT
Found at i:26501072 original size:23 final size:24
Alignment explanation
Indices: 26501043--26501093 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
26501033 TTGTATTGAG
* *
26501043 TTAAAA-AAATTATTTATATGTAGT
1 TTAAAAGAGATTACTTATAT-TAGT
26501067 TTAAAAGAGATTACTTATATTA-T
1 TTAAAAGAGATTACTTATATTAGT
26501090 TTAA
1 TTAA
26501094 GTAATTGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.21
24 8 0.33
25 11 0.46
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (24 bp):
TTAAAAGAGATTACTTATATTAGT
Found at i:26503033 original size:22 final size:21
Alignment explanation
Indices: 26502980--26503029 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
26502970 AAGTTTAATA
*
26502980 TTTTGGGATTTTAGGTTTGAG
1 TTTTGGGATTTTAGATTTGAG
* *
26503001 TTTCTGAGATTTTAGATTTTAG
1 TTT-TGGGATTTTAGATTTGAG
26503023 TTTTGGG
1 TTTTGGG
26503030 GATTCTATGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.54
Consensus pattern (21 bp):
TTTTGGGATTTTAGATTTGAG
Found at i:26510881 original size:25 final size:25
Alignment explanation
Indices: 26510853--26510901 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26510843 TTAATTATCC
26510853 AATGATGAAATTTATA-AAAATTTCA
1 AATGAT-AAATTTATATAAAATTTCA
* *
26510878 AATGGTAAATTTTTATAAAATTTC
1 AATGATAAATTTATATAAAATTTC
26510902 TAGGTGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (25 bp):
AATGATAAATTTATATAAAATTTCA
Found at i:26512593 original size:15 final size:16
Alignment explanation
Indices: 26512573--26512607 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
26512563 AAGGTATATT
*
26512573 TCATACATCAA-CATA
1 TCATACATAAAGCATA
26512588 TCATACATAAAGCATA
1 TCATACATAAAGCATA
26512604 TCAT
1 TCAT
26512608 TTCTAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.29
Consensus pattern (16 bp):
TCATACATAAAGCATA
Found at i:26515534 original size:82 final size:83
Alignment explanation
Indices: 26515442--26515595 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 83
26515432 TAAAAGAATG
*
26515442 AGAGAAAAAATTAAA-AA-AATGAAAAAAAATAAAAATG-AGAGAAAAAGAAAACTCAAAATGAA
1 AGAGAAAAAATGAAATAATAA--AAAAAAAATAAAAA-GAAGAGAAAAAGAAAACTCAAAATGAA
26515504 AA-CTTGAAAGAGAAGAAAAAA
63 AATC-TGAAAGAGAAGAAAAAA
* * *
26515525 AGAG-AAAAATGAAATAATAAAAAAAAAATGAAAAGAAGAGAAAAAGAAGACTCAAATTGAAAAT
1 AGAGAAAAAATGAAATAATAAAAAAAAAATAAAAAGAAGAGAAAAAGAAAACTCAAAATGAAAAT
26515589 CTGAAAG
66 CTGAAAG
26515596 GGCGATTTGG
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
81 1 0.02
82 53 0.84
83 7 0.11
84 2 0.03
ACGTcount: A:0.69, C:0.04, G:0.16, T:0.12
Consensus pattern (83 bp):
AGAGAAAAAATGAAATAATAAAAAAAAAATAAAAAGAAGAGAAAAAGAAAACTCAAAATGAAAAT
CTGAAAGAGAAGAAAAAA
Found at i:26516897 original size:21 final size:21
Alignment explanation
Indices: 26516863--26516931 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
26516853 TTTTTAAATT
* *
26516863 TTTGAGTTCTCAAATGAGAATC
1 TTTGAATT-TCAAATGAGAATA
* *
26516885 TTTGAATTTCAAATGAGAGTT
1 TTTGAATTTCAAATGAGAATA
* *
26516906 TTTGAATGTCAAATAAGAATA
1 TTTGAATTTCAAATGAGAATA
26516927 TTTGA
1 TTTGA
26516932 TATGTGAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 33 0.82
22 7 0.17
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (21 bp):
TTTGAATTTCAAATGAGAATA
Found at i:26516988 original size:20 final size:20
Alignment explanation
Indices: 26516955--26516992 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26516945 AAGATTTATC
*
26516955 AAATGTGAACCTTTGAACTT
1 AAATGAGAACCTTTGAACTT
*
26516975 AAATGAGAAGCTTTGAAC
1 AAATGAGAACCTTTGAAC
26516993 CTTTAGATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (20 bp):
AAATGAGAACCTTTGAACTT
Found at i:26517444 original size:84 final size:83
Alignment explanation
Indices: 26517321--26517780 Score: 395
Period size: 84 Copynumber: 5.5 Consensus size: 83
26517311 ATCGATAAGC
* * * * *
26517321 TTTATTTTTCAAAGTTG-AGAGCCT-ATATTTAGAGGAGCATTTTTTTTTTCAAAATTGTAGAGC
1 TTTATTTTTCAAAGTTGTTGAGCCTCTTA-TTAGAGGAGC-TTTTATTTTTCAAAGTTGTTGAGC
26517384 CTCTGATTAGAGGAGCATTA
64 CTCTGATTAGAGGAGCATTA
* * *
26517404 TTTATTTTTCAAAGTTGTGGAGCCTCTTATTAGATGAGCATTATTTATTTTTCAAAGTTGTTGAA
1 TTTATTTTTCAAAGTTGTTGAGCCTCTTATTAGAGGAGC--T-TTTATTTTTCAAAGTTGTTGAG
** *
26517469 CCTCT-ATTTAGAAAAACATT-
63 CCTCTGA-TTAGAGGAGCATTA
* * * *
26517489 TATT-TTTTT-GAAGTTGTTGAGCTTCTGATTAGAGGAGCTTTTATTTTTCAAAGTCGTTGAGCC
1 T-TTATTTTTCAAAGTTGTTGAGCCTCTTATTAGAGGAGCTTTTATTTTTCAAAGTTGTTGAGCC
* * * *
26517552 TCTGTTTAAATGAGCCTTA
65 TCTGATTAGAGGAGCATTA
* * *
26517571 TTTTATTTTTCAAAGTTGTTGAGCCTC-TACTTAGAGGAGCCTTTATTTTTCGAAGTCGTTGAGC
1 -TTTATTTTTCAAAGTTGTTGAGCCTCTTA-TTAGAGGAGCTTTTATTTTTCAAAGTTGTTGAGC
* *
26517635 CTCTGTTTAGAGGAGCCTTA
64 CTCTGATTAGAGGAGCATTA
* * * ** * *
26517655 TTTTATTTTTCAAAGTTATTAAGCATCTGCTTAGAGGAGCCTTTATTTTGCAAAGTTGTTGAG-C
1 -TTTATTTTTCAAAGTTGTTGAGCCTCTTATTAGAGGAGCTTTTATTTTTCAAAGTTGTTGAGCC
* *
26517719 TTTTATTTAGAGGAGC---A
65 TCTGA-TTAGAGGAGCATTA
* * *
26517736 TTTATTTTTCAAAAGTTGTGGAGCCTC-TATTTAGAAGAGTTTTTA
1 TTTATTTTTC-AAAGTTGTTGAGCCTCTTA-TTAGAGGAGCTTTTA
26517781 GTAAGTATGA
Statistics
Matches: 310, Mismatches: 51, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
80 10 0.03
81 58 0.19
82 3 0.01
83 27 0.09
84 167 0.54
85 10 0.03
86 35 0.11
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.43
Consensus pattern (83 bp):
TTTATTTTTCAAAGTTGTTGAGCCTCTTATTAGAGGAGCTTTTATTTTTCAAAGTTGTTGAGCCT
CTGATTAGAGGAGCATTA
Found at i:26517548 original size:40 final size:41
Alignment explanation
Indices: 26517321--26517780 Score: 363
Period size: 40 Copynumber: 11.1 Consensus size: 41
26517311 ATCGATAAGC
* *
26517321 TTTATTTTTCAAAGTTG-AGAGCCTAT-ATTTAGAGGAGCATT
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGC-TT
* *
26517362 TTT-TTTTTCAAAATTGTAGAGCCTCTGATTAGAGGAGCATT
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGC-TT
* * *
26517403 ATTTATTTTTCAAAGTTGTGGAGCCTCTTATTAGATGAGCATT
1 -TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGC-TT
* ** *
26517446 ATTTATTTTTCAAAGTTGTTGAACCTCT-ATTTAGAAAAACATT
1 -TTTATTTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGC-TT
* *
26517489 TATT-TTTTT-GAAGTTGTTGAGCTTCTGATTAGAGGAGC-T
1 T-TTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCTT
* * * *
26517528 TTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAATGAGCCTTAT
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAG-C-T-T
*
26517572 TTTATTTTTCAAAGTTGTTGAGCCTCT-ACTTAGAGGAGC-C
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGCTT
* * *
26517612 TTTATTTTTCGAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTAT
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAG-C-T-T
* * * * *
26517656 TTTATTTTTCAAAGTTATTAAGCATCTGCTTAGAGGAGC-C
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCTT
* * * *
26517696 TTTATTTTGCAAAGTTGTTGAG-CTTTTATTTAGAGGAGC-A
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGCTT
* *
26517736 TTTATTTTTCAAAAGTTGTGGAGCCTCT-ATTTAGAAGAG-TT
1 TTTATTTTTC-AAAGTTGTTGAGCCTCTGA-TTAGAGGAGCTT
26517777 TTTA
1 TTTA
26517781 GTAAGTATGA
Statistics
Matches: 344, Mismatches: 52, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.01
39 9 0.03
40 106 0.31
41 72 0.21
42 15 0.04
43 74 0.22
44 66 0.19
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.43
Consensus pattern (41 bp):
TTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCTT
Found at i:26517689 original size:44 final size:44
Alignment explanation
Indices: 26517321--26517703 Score: 269
Period size: 43 Copynumber: 9.1 Consensus size: 44
26517311 ATCGATAAGC
* * * **
26517321 TTTATTTTTCAAAGTTG-AGAGCCTATATTTAGAGGAG-C--AT
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* * * * * *
26517361 TTTTTTTTTCAAAATTGTAGAGCCTCTGATTAGAGGAGCATTA-
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* * ** * *
26517404 TTTATTTTTCAAAGTTGTGGAGCCTCTTATTAGATGAGCATTA-
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* * ** ** * *
26517447 TTTATTTTTCAAAGTTGTTGAACCTCTATTTAGAAAAACATT-T
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* * * * *
26517490 ATT-TTTTT-GAAGTTGTTGAGCTTCTGATTAGAGGAG-C---T
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* * *
26517528 TTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAATGAGCCTTAT
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* *
26517572 TTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCC----
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
* *
26517612 TTTATTTTTCGAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTAT
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
** * *
26517656 TTTATTTTTCAAAGTTATTAAGCATCTGCTTAGAGGAGCCTTTAT
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCC-TTAT
26517701 TTT
1 TTT
26517704 GCAAAGTTGT
Statistics
Matches: 277, Mismatches: 50, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.01
39 5 0.02
40 73 0.26
41 38 0.14
42 5 0.02
43 75 0.27
44 71 0.26
45 7 0.03
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (44 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCCTTAT
Found at i:26517745 original size:124 final size:124
Alignment explanation
Indices: 26517320--26517763 Score: 459
Period size: 124 Copynumber: 3.5 Consensus size: 124
26517310 TATCGATAAG
* * * * *
26517320 CTTTATTTTTCAAAGTTG-AGAGCCTATATTTAGAGGAGCATTTTTTTTTTCAAAATTGTAGAGC
1 CTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCA-TTTATTTTTCAAAGTTGTTGAGC
* * *
26517384 CTCTGATTAGAGGAGCATTA-TTTATTTTTCAAAGTTGTGGAGCCTCTTATTAGATGAGC
65 CTCTGATTAGAGGAGCCTTATTTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGATGAGC
* * ** * **
26517443 ATTATTTATTTTTCAAAGTTGTTGAACCTCTATTTAGAAAAACATTTATTTTTTTGAAGTTGTTG
1 ---CTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCATTTA-TTTTTCAAAGTTGTTG
* * * *
26517508 AGCTTCTGATTAGAGGAG-C---TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAATGAGC
62 AGCCTCTGATTAGAGGAGCCTTATTTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGATGAGC
* * * *
26517567 CTTATTTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCCTTTATTTTTCGAAGTCGTTG
1 C----TTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCATTTATTTTTCAAAGTTGTTG
* * * * * *
26517632 AGCCTCTGTTTAGAGGAGCCTTATTTTATTTTTCAAAGTTATTAAGCATCTGCTTAGAGGAGC
62 AGCCTCTGATTAGAGGAGCCTTATTTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGATGAGC
* * * *
26517695 CTTTATTTTGCAAAGTTGTTGAGCTTTTATTTAGAGGAGCATTTATTTTTCAAAAGTTGTGGAGC
1 CTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCATTTATTTTTC-AAAGTTGTTGAGC
26517760 CTCT
65 CTCT
26517764 ATTTAGAAGA
Statistics
Matches: 261, Mismatches: 45, Indels: 25
0.79 0.14 0.08
Matches are distributed among these distances:
124 109 0.42
125 53 0.20
126 20 0.08
127 45 0.17
128 34 0.13
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (124 bp):
CTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCATTTATTTTTCAAAGTTGTTGAGCC
TCTGATTAGAGGAGCCTTATTTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGATGAGC
Found at i:26518789 original size:25 final size:22
Alignment explanation
Indices: 26518747--26518798 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 22
26518737 AGCCAAGCCG
26518747 TTTATTTTTTTTTTGTATTTTA
1 TTTATTTTTTTTTTGTATTTTA
26518769 TTTATTTATTTTATTTAGTATTTTA
1 TTTATTT-TTTT-TTT-GTATTTTA
26518794 TTTAT
1 TTTAT
26518799 GTGTTTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 7 0.26
23 4 0.15
24 3 0.11
25 13 0.48
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTATTTTTTTTTTGTATTTTA
Found at i:26525238 original size:19 final size:19
Alignment explanation
Indices: 26525214--26525265 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
26525204 CTTTTATGCT
26525214 CTCGATTTGATCTCGATCA
1 CTCGATTTGATCTCGATCA
26525233 CTCGATTTGATCTCGATCA
1 CTCGATTTGATCTCGATCA
26525252 CTC-ATTTTGATCTC
1 CTCGA-TTTGATCTC
26525266 AGCTCTATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 1 0.03
19 31 0.97
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.40
Consensus pattern (19 bp):
CTCGATTTGATCTCGATCA
Found at i:26525436 original size:55 final size:53
Alignment explanation
Indices: 26525394--26525589 Score: 178
Period size: 55 Copynumber: 3.6 Consensus size: 53
26525384 TTGCTTTGGA
* * *
26525394 CCAAATCATTTTTTTGACTTGCAGTTCAATGTCGATCGTTTGATTTTGGCTCGAT
1 CCAAATCATTTTTTT-ACTTGCAGTTCAATCTCGATCGTTCGATCTT-GCTCGAT
* * * *
26525449 CCATATCAATTTTTTTACTTGCGGTTCAATCTCGATCATTCGATCTCGACTCGAT
1 CCAAATC-ATTTTTTTACTTGCAGTTCAATCTCGATCGTTCGATCTTG-CTCGAT
* * * * * * *
26525504 CTAGATCATTTTTTTGATTTAC-GATTCAATTTCGATCGTTCGATCTCAGCTTGAT
1 CCAAATCATTTTTTT-ACTTGCAG-TTCAATCTCGATCGTTCGATCT-TGCTCGAT
*
26525559 CCTAATCATTTTTCTTACTTGCAGTTCAATC
1 CCAAATCATTTTT-TTACTTGCAGTTCAATC
26525590 CTAATCATTT
Statistics
Matches: 113, Mismatches: 21, Indels: 14
0.76 0.14 0.09
Matches are distributed among these distances:
54 10 0.09
55 91 0.81
56 12 0.11
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (53 bp):
CCAAATCATTTTTTTACTTGCAGTTCAATCTCGATCGTTCGATCTTGCTCGAT
Found at i:26525597 original size:110 final size:110
Alignment explanation
Indices: 26525398--26525598 Score: 248
Period size: 110 Copynumber: 1.8 Consensus size: 110
26525388 TTTGGACCAA
* * * **
26525398 ATCATTTTTTTGACTTGCAGTTCAATGTCGATCGTTTGATTTTGGCTCGATCCATATCAATTTTT
1 ATCATTTTTTTGACTTACAGTTCAATGTCGATCGTTCGATCTCAGCTCGATCCATATCAATTTTT
* *
26525463 TTACTTGCGGTTCAATCTCGATCATTCGATCTCGACTCGATCTAG
66 TTACTTGCAGTTCAATCTCAATCATTCGATCTCGACTCGATCTAG
* * *
26525508 ATCATTTTTTTGATTTAC-GATTCAATTTCGATCGTTCGATCTCAGCTTGATCC-TAATC-ATTT
1 ATCATTTTTTTGACTTACAG-TTCAATGTCGATCGTTCGATCTCAGCTCGATCCAT-ATCAATTT
26525570 TTCTTACTTGCAGTTCAATC-CTAATCATT
64 TT-TTACTTGCAGTTCAATCTC-AATCATT
26525599 TAATCCCAGC
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
109 9 0.12
110 68 0.88
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (110 bp):
ATCATTTTTTTGACTTACAGTTCAATGTCGATCGTTCGATCTCAGCTCGATCCATATCAATTTTT
TTACTTGCAGTTCAATCTCAATCATTCGATCTCGACTCGATCTAG
Found at i:26525829 original size:3 final size:3
Alignment explanation
Indices: 26525816--26525943 Score: 204
Period size: 3 Copynumber: 42.7 Consensus size: 3
26525806 TTTTTTTTTG
*
26525816 TTA TTA GTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
* * *
26525861 TTA TTG TTA TTA TTA CTA GTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26525909 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26525944 GTTCTTTCCA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.02
3 112 0.97
4 2 0.02
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:26526274 original size:22 final size:23
Alignment explanation
Indices: 26526241--26526291 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
26526231 CTGGATAAAA
26526241 GATTTT-GAGTTTAAAATTT-TGG
1 GATTTTAGAGTTT-AAATTTCTGG
* *
26526263 GATTTTAG-GTTTGAGTTTCTGG
1 GATTTTAGAGTTTAAATTTCTGG
26526285 GATTTTA
1 GATTTTA
26526292 TATTTGAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 20 0.80
23 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.25, T:0.51
Consensus pattern (23 bp):
GATTTTAGAGTTTAAATTTCTGG
Found at i:26526297 original size:22 final size:21
Alignment explanation
Indices: 26526257--26526319 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
26526247 GAGTTTAAAA
*
26526257 TTTTGGGATTTTAGGTTTGAG
1 TTTTGGGATTTTAGATTTGAG
*
26526278 TTTCTGGGATTTTATATTTGAG
1 TTT-TGGGATTTTAGATTTGAG
**
26526300 TTTTAGGGATTCCAGATTTG
1 TTTT-GGGATTTTAGATTTG
26526320 GATTTTCAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 4 0.11
22 31 0.89
ACGTcount: A:0.17, C:0.05, G:0.27, T:0.51
Consensus pattern (21 bp):
TTTTGGGATTTTAGATTTGAG
Found at i:26526777 original size:14 final size:14
Alignment explanation
Indices: 26526741--26526801 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
26526731 AATCATAGAT
*
26526741 TTTTTTGCTTTTT-
1 TTTTTTGATTTTTA
*
26526754 TATTTT-ATTTTTA
1 TTTTTTGATTTTTA
26526767 TTTTTTGATTTTTA
1 TTTTTTGATTTTTA
*
26526781 TTTTTTAAGTTTTTTA
1 TTTTTT--GATTTTTA
26526797 TTTTT
1 TTTTT
26526802 AGTTTTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
12 5 0.12
13 10 0.25
14 13 0.32
16 12 0.30
ACGTcount: A:0.13, C:0.02, G:0.05, T:0.80
Consensus pattern (14 bp):
TTTTTTGATTTTTA
Found at i:26526802 original size:6 final size:7
Alignment explanation
Indices: 26526756--26526801 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
26526746 TGCTTTTTTA
26526756 TTTTA-T
1 TTTTATT
26526762 TTTTATT
1 TTTTATT
26526769 TTTTGA-T
1 TTTT-ATT
26526776 TTTTATT
1 TTTTATT
26526783 TTTTAAGTT
1 TTTT-A-TT
26526792 TTTTATT
1 TTTTATT
26526799 TTT
1 TTT
26526802 AGTTTTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
6 6 0.17
7 20 0.57
8 3 0.09
9 6 0.17
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.80
Consensus pattern (7 bp):
TTTTATT
Found at i:26526805 original size:14 final size:14
Alignment explanation
Indices: 26526749--26526809 Score: 65
Period size: 14 Copynumber: 4.4 Consensus size: 14
26526739 ATTTTTTTGC
26526749 TTTTTTA-TTTTA-
1 TTTTTTATTTTTAG
*
26526761 -TTTTTATTTTTTG
1 TTTTTTATTTTTAG
*
26526774 ATTTTTATTTTTTAAG
1 TTTTTTA-TTTTT-AG
26526790 TTTTTTATTTTTAG
1 TTTTTTATTTTTAG
26526804 TTTTTT
1 TTTTTT
26526810 TATCATTTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.15
12 4 0.10
14 14 0.34
15 10 0.24
16 7 0.17
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.80
Consensus pattern (14 bp):
TTTTTTATTTTTAG
Found at i:26532955 original size:49 final size:50
Alignment explanation
Indices: 26532863--26532963 Score: 132
Period size: 49 Copynumber: 2.0 Consensus size: 50
26532853 GGTGTGATCC
* * *
26532863 TATAGATCTAATATCAATATAGATTACCTATTTCAATTGTTGTGC-TTCT
1 TATAAATCTAATACCAATATAGACTACCTATTTCAATTGTTGTGCTTTCT
* * * *
26532912 TATAAATCTGATACCAATATAGGCTACCTATTTTAATTTTTGTGCTTTCT
1 TATAAATCTAATACCAATATAGACTACCTATTTCAATTGTTGTGCTTTCT
26532962 TA
1 TA
26532964 AATTACATAC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
49 38 0.86
50 6 0.14
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.46
Consensus pattern (50 bp):
TATAAATCTAATACCAATATAGACTACCTATTTCAATTGTTGTGCTTTCT
Found at i:26550687 original size:2 final size:2
Alignment explanation
Indices: 26550680--26550710 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26550670 TATTAATCTG
26550680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26550711 GTACTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26552760 original size:2 final size:2
Alignment explanation
Indices: 26552753--26552795 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
26552743 TATTAAATAC
* *
26552753 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TC TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26552795 T
1 T
26552796 TTGAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26566036 original size:16 final size:17
Alignment explanation
Indices: 26566014--26566054 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
26566004 CGTGTCCTTA
26566014 GGATTTT-TAAGATTTT
1 GGATTTTATAAGATTTT
* *
26566030 TGATTTTATGAGATTTT
1 GGATTTTATAAGATTTT
26566047 GGATTTTA
1 GGATTTTA
26566055 GGGGTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (17 bp):
GGATTTTATAAGATTTT
Found at i:26567158 original size:14 final size:14
Alignment explanation
Indices: 26567135--26567166 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26567125 TGTTTGTCTC
*
26567135 TTTTTTTGTTTCTG
1 TTTTTGTGTTTCTG
26567149 TTTTTGTGTTTCTG
1 TTTTTGTGTTTCTG
26567163 TTTT
1 TTTT
26567167 CGTAGTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.06, G:0.16, T:0.78
Consensus pattern (14 bp):
TTTTTGTGTTTCTG
Found at i:26567506 original size:23 final size:22
Alignment explanation
Indices: 26567480--26567542 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 22
26567470 TTTTGTTTTT
*
26567480 TTATTTTTTATAATAATTAATAA
1 TTATTTTTTAAAATAATT-ATAA
* *
26567503 TTATTTTTTAAAATTATTATTA
1 TTATTTTTTAAAATAATTATAA
* *
26567525 TTA-TTATTAAAATTATTA
1 TTATTTTTTAAAATAATTA
26567543 ATATTATACT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.39
22 6 0.17
23 16 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATTTTTTAAAATAATTATAA
Found at i:26575383 original size:19 final size:19
Alignment explanation
Indices: 26575359--26575401 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
26575349 ATTAATTTAA
* * *
26575359 AAATAAAATTTTATTTATT
1 AAATAAAAATTTAGTTACT
26575378 AAATAAAAATTTAGTTACT
1 AAATAAAAATTTAGTTACT
26575397 AAATA
1 AAATA
26575402 TATATAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
AAATAAAAATTTAGTTACT
Found at i:26580594 original size:2 final size:2
Alignment explanation
Indices: 26580587--26580619 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26580577 ACCTCTTAAG
26580587 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26580620 GATAATAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26581663 original size:20 final size:21
Alignment explanation
Indices: 26581638--26581686 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
26581628 ATATTTTTAG
26581638 CCAAAAA-CATCTTGAATAAT
1 CCAAAAATCATCTTGAATAAT
*
26581658 CCAAAAAATGATCTTGAATAAT
1 CC-AAAAATCATCTTGAATAAT
26581680 CCAAAAA
1 CCAAAAA
26581687 ATGGCAGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 10 0.38
22 14 0.54
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.22
Consensus pattern (21 bp):
CCAAAAATCATCTTGAATAAT
Found at i:26581671 original size:22 final size:22
Alignment explanation
Indices: 26581646--26581689 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26581636 AGCCAAAAAC
26581646 ATCTTGAATAATCCAAAAAATG
1 ATCTTGAATAATCCAAAAAATG
26581668 ATCTTGAATAATCCAAAAAATG
1 ATCTTGAATAATCCAAAAAATG
26581690 GCAGGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (22 bp):
ATCTTGAATAATCCAAAAAATG
Found at i:26581700 original size:22 final size:22
Alignment explanation
Indices: 26581651--26581701 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
26581641 AAAACATCTT
* **
26581651 GAATAATCCAAAAAATGATCTT
1 GAATAATCCAAAAAATGAGCAG
26581673 GAATAATCCAAAAAATG-GCAG
1 GAATAATCCAAAAAATGAGCAG
26581694 GAGATAAT
1 GA-ATAAT
26581702 TCAATGCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.22
Consensus pattern (22 bp):
GAATAATCCAAAAAATGAGCAG
Found at i:26582476 original size:28 final size:28
Alignment explanation
Indices: 26582426--26582491 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
26582416 ATTTTGTTGC
*
26582426 AATTATAAAATTATAATAAAATTTTAAA
1 AATTATAAAATTATAATAAAATTATAAA
* *
26582454 AATTATAAAATT-TCACTATAATTATAAA
1 AATTATAAAATTAT-AATAAAATTATAAA
**
26582482 TTTTATAAAA
1 AATTATAAAA
26582492 AAAAGTTACA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
AATTATAAAATTATAATAAAATTATAAA
Found at i:26583074 original size:23 final size:23
Alignment explanation
Indices: 26583043--26583091 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
26583033 ATCAGTTTAA
**
26583043 AATTGATTTATTTAAATTAAATG
1 AATTGATTTATAGAAATTAAATG
* *
26583066 AATTTATTTATAGACATTAAATG
1 AATTGATTTATAGAAATTAAATG
26583089 AAT
1 AAT
26583092 ATATAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (23 bp):
AATTGATTTATAGAAATTAAATG
Found at i:26583454 original size:23 final size:23
Alignment explanation
Indices: 26583424--26583485 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
26583414 TAAAATATAA
* * *
26583424 ATAAATATTTATTAAATTTATTT
1 ATAAATATTAAATAAATTTATTC
26583447 ATAAATATTAAATAAATTTATTC
1 ATAAATATTAAATAAATTTATTC
*
26583470 ATAAACA-TAAATAAAT
1 ATAAATATTAAATAAAT
26583486 AAAACAAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 9 0.26
23 26 0.74
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAATATTAAATAAATTTATTC
Found at i:26592651 original size:16 final size:16
Alignment explanation
Indices: 26592627--26592696 Score: 58
Period size: 16 Copynumber: 4.6 Consensus size: 16
26592617 TTTTAATTAA
*
26592627 TTATTTAATTATATAT
1 TTATATAATTATATAT
*
26592643 TTATATAATTATATTT
1 TTATATAATTATATAT
*
26592659 TTAAAT-ATT-TATAT
1 TTATATAATTATATAT
* * *
26592673 TTAAAAAATAATAT-T
1 TTATATAATTATATAT
26592688 TTAT-TAATT
1 TTATATAATT
26592697 TCGGATCGGA
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
14 12 0.28
15 9 0.21
16 22 0.51
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATATAATTATATAT
Found at i:26592651 original size:24 final size:24
Alignment explanation
Indices: 26592624--26592672 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
26592614 ATTTTTTAAT
*
26592624 TAATTAT-TTAATTATATATTTATA
1 TAATTATATT-ATTAAATATTTATA
*
26592648 TAATTATATTTTTAAATATTTATA
1 TAATTATATTATTAAATATTTATA
26592672 T
1 T
26592673 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TAATTATATTATTAAATATTTATA
Found at i:26592675 original size:14 final size:16
Alignment explanation
Indices: 26592632--26592690 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 16
26592622 ATTAATTATT
*
26592632 TAATTATATATTTATA
1 TAATTATATATTTAAA
*
26592648 TAATTATATTTTTAAA
1 TAATTATATATTTAAA
26592664 T-ATT-TATATTTAAA
1 TAATTATATATTTAAA
* *
26592678 AAATAATAT-TTTA
1 TAATTATATATTTA
26592691 TTAATTTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 9 0.25
15 9 0.25
16 18 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATTATATATTTAAA
Found at i:26594221 original size:44 final size:44
Alignment explanation
Indices: 26594154--26594251 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 44
26594144 TATACATAAC
*
26594154 TAAATATATAACTATTGACAATATATTCTAATAGCACTAACCAA
1 TAAAAATATAACTATTGACAATATATTCTAATAGCACTAACCAA
* * * *
26594198 TAAAAATATAACTATTGATAATATATTCTAATAGTATTAATCAA
1 TAAAAATATAACTATTGACAATATATTCTAATAGCACTAACCAA
26594242 TAAAAA-ATAA
1 TAAAAATATAA
26594252 TTTACACAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 4 0.08
44 45 0.92
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.34
Consensus pattern (44 bp):
TAAAAATATAACTATTGACAATATATTCTAATAGCACTAACCAA
Found at i:26597606 original size:22 final size:22
Alignment explanation
Indices: 26597580--26597623 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26597570 CGTATATTTA
* *
26597580 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
26597602 TATTTGTATCCCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
26597624 AAAGATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:26598026 original size:18 final size:18
Alignment explanation
Indices: 26598003--26598037 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26597993 ATGTTCTTTG
*
26598003 GGTAAAGTTTCTAGTTCA
1 GGTAAAGCTTCTAGTTCA
*
26598021 GGTAAAGCTTCTGGTTC
1 GGTAAAGCTTCTAGTTC
26598038 TCATGGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
GGTAAAGCTTCTAGTTCA
Found at i:26598415 original size:22 final size:22
Alignment explanation
Indices: 26598387--26598430 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26598377 ACTTGCTAAG
26598387 GAGAAGGATGGACTATACTATC
1 GAGAAGGATGGACTATACTATC
26598409 GAGAAGGATGGACTATACTATC
1 GAGAAGGATGGACTATACTATC
26598431 TTGAGATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (22 bp):
GAGAAGGATGGACTATACTATC
Found at i:26612727 original size:8 final size:8
Alignment explanation
Indices: 26612714--26612738 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26612704 ACAAATAAAT
26612714 GATGAAGG
1 GATGAAGG
26612722 GATGAAGG
1 GATGAAGG
26612730 GATGAAGG
1 GATGAAGG
26612738 G
1 G
26612739 CCACAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.52, T:0.12
Consensus pattern (8 bp):
GATGAAGG
Found at i:26613050 original size:25 final size:25
Alignment explanation
Indices: 26613016--26613066 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26613006 TTTTAGGCAT
*
26613016 TTTACCTATTCCACTGATTCGTGAC
1 TTTACCTATTCCACTGATACGTGAC
26613041 TTTACCTATTCCACTGATACGTGAC
1 TTTACCTATTCCACTGATACGTGAC
26613066 T
1 T
26613067 GGATGTGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (25 bp):
TTTACCTATTCCACTGATACGTGAC
Found at i:26614472 original size:15 final size:14
Alignment explanation
Indices: 26614454--26614502 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
26614444 TGATAGATTT
26614454 TAATTTGAATTTAAA
1 TAATTT-AATTTAAA
26614469 TAA-TT-ATTTAAA
1 TAATTTAATTTAAA
26614481 -AATATTAAATTTAAA
1 TAAT-TT-AATTTAAA
26614496 TAATTTA
1 TAATTTA
26614503 TTAAATAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
11 2 0.07
12 7 0.24
13 2 0.07
14 3 0.10
15 12 0.41
16 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
TAATTTAATTTAAA
Found at i:26614676 original size:26 final size:28
Alignment explanation
Indices: 26614646--26614698 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
26614636 TATTGATTTT
*
26614646 AATTTAAATAA-TTATT-TAAAATATTC
1 AATTTAAATAATTTATTAAAAAATATTC
26614672 AATTTAAATAATTTATTAAAAAATATT
1 AATTTAAATAATTTATTAAAAAATATT
26614699 ATTTGATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 11 0.46
27 5 0.21
28 8 0.33
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (28 bp):
AATTTAAATAATTTATTAAAAAATATTC
Found at i:26614816 original size:2 final size:2
Alignment explanation
Indices: 26614806--26614836 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26614796 ATATATTGTA
26614806 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26614837 TAGATTGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26615083 original size:101 final size:101
Alignment explanation
Indices: 26614908--26615110 Score: 406
Period size: 101 Copynumber: 2.0 Consensus size: 101
26614898 GTAAAATGTT
26614908 GGACCACACAGCGACAAGACCATTCAAACCACACATGGTCATTATTATAACTTAAAAACTGATGA
1 GGACCACACAGCGACAAGACCATTCAAACCACACATGGTCATTATTATAACTTAAAAACTGATGA
26614973 AAGGGCAGGAAAGAAATTGTGCCATTAATTGGATCG
66 AAGGGCAGGAAAGAAATTGTGCCATTAATTGGATCG
26615009 GGACCACACAGCGACAAGACCATTCAAACCACACATGGTCATTATTATAACTTAAAAACTGATGA
1 GGACCACACAGCGACAAGACCATTCAAACCACACATGGTCATTATTATAACTTAAAAACTGATGA
26615074 AAGGGCAGGAAAGAAATTGTGCCATTAATTGGATCG
66 AAGGGCAGGAAAGAAATTGTGCCATTAATTGGATCG
26615110 G
1 G
26615111 ATAGCTGTTT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (101 bp):
GGACCACACAGCGACAAGACCATTCAAACCACACATGGTCATTATTATAACTTAAAAACTGATGA
AAGGGCAGGAAAGAAATTGTGCCATTAATTGGATCG
Found at i:26627817 original size:75 final size:77
Alignment explanation
Indices: 26627722--26627875 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 77
26627712 GACTACTTCA
* *
26627722 TATGTTTTTAAAAAAATGGTTATAATCTTTCTAATTTTTTATAATAGTTTTGTTATAAGCTGTAA
1 TATGTTTTTAAAAAAATGGTTATAATCTTTCTAATATTTGATAATAGTTTTGTTATAAGCTGTAA
26627787 AAAGTAATTTAT
66 AAAGTAATTTAT
*
26627799 TATG-TTTT-AAAAATTGGTTATAATCTTTCTAATATTTGATAATAGTTTTGTTATAAGCTGTAA
1 TATGTTTTTAAAAAAATGGTTATAATCTTTCTAATATTTGATAATAGTTTTGTTATAAGCTGTAA
*
26627862 AAAGTTATTTAT
66 AAAGTAATTTAT
26627874 TA
1 TA
26627876 AAAAAAATTA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
75 65 0.89
76 4 0.05
77 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (77 bp):
TATGTTTTTAAAAAAATGGTTATAATCTTTCTAATATTTGATAATAGTTTTGTTATAAGCTGTAA
AAAGTAATTTAT
Found at i:26628291 original size:19 final size:19
Alignment explanation
Indices: 26628260--26628305 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
26628250 ATAAATAAAT
* *
26628260 AAAT-AATTTAAAATTTAA
1 AAATAAATTAAAAACTTAA
26628278 AAATAAATTAAAAACTTAA
1 AAATAAATTAAAAACTTAA
*
26628297 AAAGAAATT
1 AAATAAATT
26628306 CAATTTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AAATAAATTAAAAACTTAA
Found at i:26630126 original size:3 final size:3
Alignment explanation
Indices: 26630118--26630155 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
26630108 ATTTTTTCAT
26630118 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26630156 TTGTGAATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26639369 original size:2 final size:2
Alignment explanation
Indices: 26639362--26639389 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26639352 CATTAAAGTA
26639362 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26639390 TATGTGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26645372 original size:12 final size:12
Alignment explanation
Indices: 26645357--26645390 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
26645347 ATTGTTGTTG
26645357 TTATTATTATTA-
1 TTATTATT-TTAC
26645369 TTATTATTTTAC
1 TTATTATTTTAC
26645381 TTATTATTTT
1 TTATTATTTT
26645391 TAATTAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 3 0.14
12 18 0.86
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTATTTTAC
Found at i:26657254 original size:32 final size:32
Alignment explanation
Indices: 26657200--26657261 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
26657190 GACTTGTAGT
* *
26657200 TCAATCTTGATAACTTTATTTTTTATCTTGGC
1 TCAATCTAGATAACTTTATTTTTTAACTTGGC
*
26657232 TCAATCTAGATCA-TTTATTTTTTTAACTTG
1 TCAATCTAGATAACTTTA-TTTTTTAACTTG
26657262 TAGCTTAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.24, C:0.15, G:0.08, T:0.53
Consensus pattern (32 bp):
TCAATCTAGATAACTTTATTTTTTAACTTGGC
Found at i:26658909 original size:24 final size:23
Alignment explanation
Indices: 26658876--26658936 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 23
26658866 CATGTATTTG
*
26658876 TTTTTCATTTTATGTTTATTTT-T
1 TTTTTTATTTTATGTTT-TTTTAT
26658899 TATTTTTATTTTATGTTTTTTTAT
1 T-TTTTTATTTTATGTTTTTTTAT
26658923 TTTTTTATTATTAT
1 TTTTTTATT-TTAT
26658937 TTAATTGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 13 0.38
24 21 0.62
ACGTcount: A:0.16, C:0.02, G:0.03, T:0.79
Consensus pattern (23 bp):
TTTTTTATTTTATGTTTTTTTAT
Found at i:26658917 original size:13 final size:13
Alignment explanation
Indices: 26658874--26658918 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
26658864 CACATGTATT
26658874 TGTTTTTCATTTTA
1 TGTTTTT-ATTTTA
26658888 TGTTTATT-TTTTA
1 TGTTT-TTATTTTA
26658901 --TTTTTATTTTA
1 TGTTTTTATTTTA
26658912 TGTTTTT
1 TGTTTTT
26658919 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
10 2 0.07
11 8 0.30
13 10 0.37
14 5 0.19
15 2 0.07
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (13 bp):
TGTTTTTATTTTA
Found at i:26658928 original size:11 final size:11
Alignment explanation
Indices: 26658883--26658934 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
26658873 TTGTTTTTCA
26658883 TTTTATGTTTATT
1 TTTTAT-TTT-TT
*
26658896 TTTTATTTTTA
1 TTTTATTTTTT
*
26658907 TTTTA-TGTTT
1 TTTTATTTTTT
26658917 TTTTATTTTTT
1 TTTTATTTTTT
*
26658928 TATTATT
1 TTTTATT
26658935 ATTTAATTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 8 0.24
11 16 0.48
12 3 0.09
13 6 0.18
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:26658928 original size:18 final size:18
Alignment explanation
Indices: 26658883--26658931 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
26658873 TTGTTTTTCA
26658883 TTTTATGTTTATTTTTTAT
1 TTTTAT-TTTATTTTTTAT
26658902 TTTTATTTTATGTTTTT-T
1 TTTTATTTTAT-TTTTTAT
26658920 TATTT-TTTTATT
1 T-TTTATTTTATT
26658932 ATTATTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.04
18 13 0.46
19 14 0.50
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (18 bp):
TTTTATTTTATTTTTTAT
Found at i:26658933 original size:21 final size:21
Alignment explanation
Indices: 26658876--26658926 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 21
26658866 CATGTATTTG
26658876 TTTTTCATTTTATGTTTATTTTTTA
1 TTTTT-ATTTTATG--T-TTTTTTA
26658901 TTTTTATTTTATGTTTTTTTA
1 TTTTTATTTTATGTTTTTTTA
26658922 TTTTT
1 TTTTT
26658927 TTATTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.46
22 1 0.04
24 8 0.31
25 5 0.19
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTTTATTTTATGTTTTTTTA
Found at i:26664028 original size:4 final size:4
Alignment explanation
Indices: 26664021--26664062 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
26664011 ATATATATAA
26664021 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
26664063 CAGTATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:26668239 original size:17 final size:17
Alignment explanation
Indices: 26668212--26668251 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
26668202 GAAATTCATG
* *
26668212 AAGAAACAAAAGCAAAA
1 AAGAAAAAAAAGAAAAA
*
26668229 AGGAAAAAAAAGAAAAA
1 AAGAAAAAAAAGAAAAA
26668246 AAGAAA
1 AAGAAA
26668252 GAGAAGGTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAGAAAAA
Found at i:26671332 original size:20 final size:20
Alignment explanation
Indices: 26671296--26671335 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26671286 TTTTCTGATG
*
26671296 AAATTTTCTTTTCTTTTTTT
1 AAATTTTCTATTCTTTTTTT
*
26671316 AAATTTTCTAAT-TTTTTTT
1 AAATTTTCTATTCTTTTTTT
26671335 A
1 A
26671336 GAAAGATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (20 bp):
AAATTTTCTATTCTTTTTTT
Found at i:26671809 original size:17 final size:17
Alignment explanation
Indices: 26671787--26671821 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26671777 TTTAAGACGG
26671787 TTTCTTTTAATTTCTTT
1 TTTCTTTTAATTTCTTT
**
26671804 TTTCTTTTTTTTTCTTT
1 TTTCTTTTAATTTCTTT
26671821 T
1 T
26671822 AATAATAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTCTTTTAATTTCTTT
Found at i:26675837 original size:13 final size:12
Alignment explanation
Indices: 26675820--26675856 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
26675810 CTTTCAAACC
*
26675820 CTTTTTCTTTTT
1 CTTTTTTTTTTT
26675832 CTTTTTTTTTTCT
1 CTTTTTTTTTT-T
26675845 CTTTTTTTTTTT
1 CTTTTTTTTTTT
26675857 TTAAACAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
CTTTTTTTTTTT
Found at i:26675843 original size:17 final size:17
Alignment explanation
Indices: 26675821--26675858 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
26675811 TTTCAAACCC
26675821 TTTTTCT-TTTTCTTTTT
1 TTTTTCTCTTTT-TTTTT
26675838 TTTTTCTCTTTTTTTTT
1 TTTTTCTCTTTTTTTTT
26675855 TTTT
1 TTTT
26675859 AAACAGCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTT
Found at i:26675849 original size:19 final size:17
Alignment explanation
Indices: 26675821--26675858 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 17
26675811 TTTCAAACCC
26675821 TTTTTCTTTTTCTTTTTT
1 TTTTTCTTTTT-TTTTTT
26675839 TTTTCTCTTTTTTTTTTT
1 TTTT-TCTTTTTTTTTTT
26675857 TT
1 TT
26675859 AAACAGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTT
Found at i:26679920 original size:15 final size:16
Alignment explanation
Indices: 26679887--26679920 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26679877 TTTTAATTTT
26679887 AATAATTAAAATACAA
1 AATAATTAAAATACAA
*
26679903 AATAATTAACAT-CAA
1 AATAATTAAAATACAA
26679918 AAT
1 AAT
26679921 TGAAATTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAATTAAAATACAA
Found at i:26690628 original size:108 final size:108
Alignment explanation
Indices: 26690494--26690710 Score: 328
Period size: 108 Copynumber: 2.0 Consensus size: 108
26690484 TTAAAATACA
* * *
26690494 TTGGTTTCTCAAATGTTTTAAACTGAAAACCTTGT-TGCAAAATCCAGTTCTTTGCTCTGATTGC
1 TTGGTTTCTCAAATGTTTAAAACTGAAAACCTT-TCTGCAAAATCCAGATCTTTGCTCGGATTGC
* * * *
26690558 TTTAATTTTATTCCATCCATCTTTTTCTATTGTTAATTTGCCAT
65 TATAAGTTTATTCCATCCATCATTTTCTATTGTTAATGTGCCAT
*
26690602 TTGGTTTCTCAAATGTTTAAAACTGAAAACCTTTCTGCAAAATTCAGATCTTTGCTCGGATTGCT
1 TTGGTTTCTCAAATGTTTAAAACTGAAAACCTTTCTGCAAAATCCAGATCTTTGCTCGGATTGCT
**
26690667 ATAAGTTTATTTGATCCATCATTTTCTATTGTTAATGTGCCAT
66 ATAAGTTTATTCCATCCATCATTTTCTATTGTTAATGTGCCAT
26690710 T
1 T
26690711 ACTCTTTGGG
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 1 0.01
108 97 0.99
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.45
Consensus pattern (108 bp):
TTGGTTTCTCAAATGTTTAAAACTGAAAACCTTTCTGCAAAATCCAGATCTTTGCTCGGATTGCT
ATAAGTTTATTCCATCCATCATTTTCTATTGTTAATGTGCCAT
Done.