Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 141 of 160
Found at i:26691024 original size:12 final size:11
Alignment explanation
Indices: 26691009--26691056 Score: 53
Period size: 10 Copynumber: 4.2 Consensus size: 11
26690999 AGAGAGAGAG
*
26691009 AGAAAATAGACA
1 AGAAAA-AGAAA
26691021 AGAAAAAAGAAAA
1 AG-AAAAAG-AAA
26691034 AGAAAAAGAAA
1 AGAAAAAGAAA
26691045 AG-AAAAGAAA
1 AGAAAAAGAAA
26691055 AG
1 AG
26691057 TTTATTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 10 0.30
11 5 0.15
12 10 0.30
13 8 0.24
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:26691035 original size:6 final size:6
Alignment explanation
Indices: 26691024--26691055 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
26691014 ATAGACAAGA
26691024 AAAAAG AAAAAG AAAAAG -AAAAG -AAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
26691056 GTTTATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26691447 original size:35 final size:35
Alignment explanation
Indices: 26691401--26691472 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
26691391 CAGCAAAATC
*
26691401 ATGCTTTATAATCTAATAGATGACAATTGATTTCT
1 ATGCTTTATAATCAAATAGATGACAATTGATTTCT
**
26691436 ATGCTTTATAATCAAATAGATGATGATTGATTTCT
1 ATGCTTTATAATCAAATAGATGACAATTGATTTCT
26691471 AT
1 AT
26691473 CTCATGAGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (35 bp):
ATGCTTTATAATCAAATAGATGACAATTGATTTCT
Found at i:26692415 original size:59 final size:59
Alignment explanation
Indices: 26692342--26692463 Score: 226
Period size: 59 Copynumber: 2.1 Consensus size: 59
26692332 TGTACTGGTA
26692342 ATTGGGCACACACATATGATGCGAACGATAAGTAAATGTTGAATACAAATTTGCGACTC
1 ATTGGGCACACACATATGATGCGAACGATAAGTAAATGTTGAATACAAATTTGCGACTC
* *
26692401 ATTGGGCACGCACATATGATGTGAACGATAAGTAAATGTTGAATACAAATTTGCGACTC
1 ATTGGGCACACACATATGATGCGAACGATAAGTAAATGTTGAATACAAATTTGCGACTC
26692460 ATTG
1 ATTG
26692464 TTTGCATCCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (59 bp):
ATTGGGCACACACATATGATGCGAACGATAAGTAAATGTTGAATACAAATTTGCGACTC
Found at i:26695650 original size:27 final size:25
Alignment explanation
Indices: 26695608--26695674 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 25
26695598 TTTTAAATTA
*
26695608 AAATAT-TAAATAATAATTTGATTAAT
1 AAATATATAAAT-ATAATTT-AATAAT
*
26695634 ATAATATATAAATATAAATTTAATAGT
1 A-AATATATAAATAT-AATTTAATAAT
26695661 AAATA-ATAAATATA
1 AAATATATAAATATA
26695675 TTTTTTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
24 1 0.03
25 8 0.22
26 5 0.14
27 12 0.33
28 10 0.28
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (25 bp):
AAATATATAAATATAATTTAATAAT
Found at i:26696592 original size:22 final size:22
Alignment explanation
Indices: 26696564--26696606 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26696554 AAAATTTCAC
*
26696564 TTAATTAGTTTATACAATCATA
1 TTAATTAATTTATACAATCATA
26696586 TTAATTAATTTATACAATCAT
1 TTAATTAATTTATACAATCAT
26696607 GTTATATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (22 bp):
TTAATTAATTTATACAATCATA
Found at i:26696918 original size:42 final size:42
Alignment explanation
Indices: 26696871--26696951 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
26696861 ACCACAAATA
26696871 CTTAACTATAATATTTTTCCTTTTTGGTTCTTGAATTTTGTT
1 CTTAACTATAATATTTTTCCTTTTTGGTTCTTGAATTTTGTT
26696913 CTTAACTATAATATTTTTCCTTTTTGGTTCTTGAATTTT
1 CTTAACTATAATATTTTTCCTTTTTGGTTCTTGAATTTT
26696952 TTTTTTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.20, C:0.12, G:0.09, T:0.59
Consensus pattern (42 bp):
CTTAACTATAATATTTTTCCTTTTTGGTTCTTGAATTTTGTT
Found at i:26699183 original size:13 final size:12
Alignment explanation
Indices: 26699165--26699212 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
26699155 TTAATTTTTG
26699165 TATTTATTTTATT
1 TATTTATTTTA-T
**
26699178 TATTTATTTGGT
1 TATTTATTTTAT
*
26699190 TATCTTATTTGAT
1 TAT-TTATTTTAT
26699203 TATTTATTTT
1 TATTTATTTT
26699213 TAAAGTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.71
Consensus pattern (12 bp):
TATTTATTTTAT
Found at i:26699192 original size:21 final size:21
Alignment explanation
Indices: 26699168--26699207 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26699158 ATTTTTGTAT
*
26699168 TTATTTTATTT-ATTTATTTGG
1 TTATCTTATTTGA-TTATTTGG
26699189 TTATCTTATTTGATTATTT
1 TTATCTTATTTGATTATTT
26699208 ATTTTTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (21 bp):
TTATCTTATTTGATTATTTGG
Found at i:26699875 original size:43 final size:44
Alignment explanation
Indices: 26699803--26699888 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 44
26699793 CTTTTTTTCA
* * *
26699803 AAAAATAAAAAATTTTTAAATTGATCCAAATGGTGAA-AATTTT
1 AAAAATAAAAAATTTTTAAATAGACCCAAAAGGTGAAGAATTTT
*
26699846 AAAAATAAAAAATTTTTAAATAGGCCCAAAAGGTGAAGAATTT
1 AAAAATAAAAAATTTTTAAATAGACCCAAAAGGTGAAGAATTT
26699889 AGAAATTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
43 33 0.87
44 5 0.13
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (44 bp):
AAAAATAAAAAATTTTTAAATAGACCCAAAAGGTGAAGAATTTT
Found at i:26702474 original size:62 final size:61
Alignment explanation
Indices: 26702300--26702472 Score: 215
Period size: 62 Copynumber: 2.8 Consensus size: 61
26702290 TGCCTTTATA
* *
26702300 TAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATACC-TTCTTTTAAAA-TTTCATTTT
1 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACCATT-TTTAAAAATTTTCATTTT
* * * * ** * *
26702360 CAAGGAAAATTGATACTTTCAATTTTTCCTCAAAAAAAATACTTTTTGAAAATTTTTATTTT
1 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACCA-TTTTTAAAAATTTTCATTTT
*
26702422 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACCATTTTCAAAAA
1 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACCATTTTTAAAAA
26702473 ATATTGATAC
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
60 33 0.35
61 15 0.16
62 45 0.48
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (61 bp):
TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACCATTTTTAAAAATTTTCATTTT
Found at i:26702503 original size:45 final size:43
Alignment explanation
Indices: 26702417--26702515 Score: 105
Period size: 45 Copynumber: 2.2 Consensus size: 43
26702407 GAAAATTTTT
*
26702417 ATTTTTAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACC
1 ATTTTCAA-AAAAATTGATACTTTCAATTTTTTCTCAAAAATA-C
26702462 ATTTTCAAAAAATATTGATACCTTT-AACTTTTCTTC-C-AAAATAC
1 ATTTTCAAAAAA-ATTGATA-CTTTCAA-TTTT-TTCTCAAAAATAC
*
26702506 TTTTTCAAAA
1 ATTTTCAAAA
26702516 TTGTTATTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
44 14 0.29
45 22 0.46
46 9 0.19
47 3 0.06
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (43 bp):
ATTTTCAAAAAAATTGATACTTTCAATTTTTTCTCAAAAATAC
Found at i:26702512 original size:44 final size:44
Alignment explanation
Indices: 26702418--26702515 Score: 107
Period size: 44 Copynumber: 2.2 Consensus size: 44
26702408 AAAATTTTTA
26702418 TTTTT-AAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATACC
1 TTTTTCAA-AAAAATTGATACTTTCAATTTTTTCTCAAAAATACC
*
26702462 ATTTTCAAAAAATATTGATACCTTT-AACTTTTCTTC-C-AAAATA-C
1 TTTTTCAAAAAA-ATTGATA-CTTTCAA-TTTT-TTCTCAAAAATACC
26702506 TTTTTCAAAA
1 TTTTTCAAAA
26702516 TTGTTATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
44 18 0.38
45 17 0.36
46 9 0.19
47 3 0.06
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.43
Consensus pattern (44 bp):
TTTTTCAAAAAAATTGATACTTTCAATTTTTTCTCAAAAATACC
Found at i:26702582 original size:59 final size:58
Alignment explanation
Indices: 26702462--26702613 Score: 150
Period size: 59 Copynumber: 2.6 Consensus size: 58
26702452 CAAAAATACC
*
26702462 ATTTTCAAA-AAATATTGATACCTTTAACTTTTCTTCCAAAATACTTTTTCAAAATTGTT
1 ATTTTCAAAGAAA-ATTGATA-CTTTAACTTTTCTTCAAAAATACTTTTTCAAAATTGTT
** * *
26702521 ATTTTCAAAGAAAATTGATACTTTCAACTTTTACTT-AAAAGATA-TTTTTTGAAGTTTTT
1 ATTTTCAAAGAAAATTGATACTTT-AACTTTT-CTTCAAAA-ATACTTTTTCAAAATTGTT
* * *
26702580 ATTTT-TAAGAAAAATTAATTCTTTAACTTTTCTT
1 ATTTTCAAAG-AAAATTGATACTTTAACTTTTCTT
26702614 GAAATTTTGA
Statistics
Matches: 80, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
57 3 0.04
58 14 0.17
59 54 0.68
60 9 0.11
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (58 bp):
ATTTTCAAAGAAAATTGATACTTTAACTTTTCTTCAAAAATACTTTTTCAAAATTGTT
Found at i:26704558 original size:85 final size:83
Alignment explanation
Indices: 26704246--26704615 Score: 316
Period size: 85 Copynumber: 4.4 Consensus size: 83
26704236 CCTAAAGATG
* * * * * *
26704246 GATCTGGCATAGGTCAAAATCC-AAA-ATAATGACTTGGATGAAATCAAAGTCTAAGATAAATAA
1 GATCTGGCATAGGTCAAAATCCAAAACAAAATGACCTAGATG-AACCAAAGTCTAAAATAATTAA
*
26704309 CTTGGACTGAACCAAAGAA
65 CTTGGACTGAACCAAAAAA
* * ** * *
26704328 GAATCTGACATAGATCAAAATTTAAAATAAAATGACCTAAATGAAACCAAAGTCTAAAATAATTA
1 G-ATCTGGCATAGGTCAAAATCCAAAACAAAATGACCTAGATG-AACCAAAGTCTAAAATAATTA
*
26704393 ACTTGTACTGAACCAAAGAAA
64 ACTTGGACTGAACCAAA-AAA
* * ** * * *
26704414 GATCTGGCATAAG-CCAAATCTGAAACAAAATAACTTAGATAGAACCAAAGTTTAAAATAATTAA
1 GATCTGGCATAGGTCAAAATCCAAAACAAAATGACCTAGAT-GAACCAAAGTCTAAAATAATTAA
*
26704478 CTTGGACTAAACCAAAAAA
65 CTTGGACTGAACCAAAAAA
* * * * * * *
26704497 TGATCTAGCATAGGTCAAAATCCAAAACAAAATGACCTGGATAGAACTAGAGTTTGAAATAAGTA
1 -GATCTGGCATAGGTCAAAATCCAAAACAAAATGACCTAGAT-GAACCAAAGTCTAAAATAATTA
* * * * *
26704562 ACTTAGATTTAATCAAAGAA
64 ACTTGGACTGAACCAAAAAA
* * *
26704582 GATATGGCATAAGCCAAAAT-CAAAACAAAATGAC
1 GATCTGGCATAGGTCAAAATCCAAAACAAAATGAC
26704616 TTGAATCGAA
Statistics
Matches: 234, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
82 1 0.00
83 34 0.15
84 85 0.36
85 111 0.47
86 3 0.01
ACGTcount: A:0.49, C:0.15, G:0.14, T:0.22
Consensus pattern (83 bp):
GATCTGGCATAGGTCAAAATCCAAAACAAAATGACCTAGATGAACCAAAGTCTAAAATAATTAAC
TTGGACTGAACCAAAAAA
Found at i:26704910 original size:17 final size:16
Alignment explanation
Indices: 26704890--26704952 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
26704880 TGAAAATTGG
*
26704890 AGATTCGTAAGATTTTC
1 AGATTCATAAGA-TTTC
* **
26704907 AGATTCACAAGCATTGA
1 AGATTCATAAG-ATTTC
26704924 AGATTCATAAGACTTTC
1 AGATTCATAAGA-TTTC
*
26704941 AGATTCGTAAGA
1 AGATTCATAAGA
26704953 ATGAATCAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
16 1 0.03
17 34 0.94
18 1 0.03
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (16 bp):
AGATTCATAAGATTTC
Found at i:26705266 original size:21 final size:21
Alignment explanation
Indices: 26705240--26705284 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
26705230 TTTTCACTAA
26705240 AAACTCAAAAATCCTCATTTG
1 AAACTCAAAAATCCTCATTTG
* *
26705261 AAACTCAAAGATTCTCATTTG
1 AAACTCAAAAATCCTCATTTG
26705282 AAA
1 AAA
26705285 ATTCTTAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (21 bp):
AAACTCAAAAATCCTCATTTG
Found at i:26706412 original size:24 final size:25
Alignment explanation
Indices: 26706385--26706439 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
26706375 CAATTTGAGT
*
26706385 TTTTTTTCTCTTGTTTT-TTTTTCA
1 TTTTTTTCACTTGTTTTATTTTTCA
* *
26706409 TTTTTTTCACTTTTTTTATTTTTTA
1 TTTTTTTCACTTGTTTTATTTTTCA
26706434 TTTTTT
1 TTTTTT
26706440 ATTTTTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.82
Consensus pattern (25 bp):
TTTTTTTCACTTGTTTTATTTTTCA
Found at i:26706414 original size:8 final size:8
Alignment explanation
Indices: 26706401--26706472 Score: 62
Period size: 9 Copynumber: 9.0 Consensus size: 8
26706391 TCTCTTGTTT
26706401 TTTTTTCA
1 TTTTTTCA
26706409 TTTTTTTCA
1 -TTTTTTCA
*
26706418 CTTTTTTTA
1 -TTTTTTCA
26706427 TTTTTT-A
1 TTTTTTCA
26706434 TTTTTT-A
1 TTTTTTCA
26706441 -TTTTTCAA
1 TTTTTTC-A
26706449 TTTTTTGC-
1 TTTTTT-CA
*
26706457 TTATTTCA
1 TTTTTTCA
26706465 TTTTTTCA
1 TTTTTTCA
26706473 CTTCATCCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
6 5 0.09
7 9 0.17
8 19 0.35
9 20 0.37
10 1 0.02
ACGTcount: A:0.14, C:0.10, G:0.01, T:0.75
Consensus pattern (8 bp):
TTTTTTCA
Found at i:26706430 original size:7 final size:7
Alignment explanation
Indices: 26706420--26706445 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26706410 TTTTTTCACT
26706420 TTTTTTA
1 TTTTTTA
26706427 TTTTTTA
1 TTTTTTA
26706434 TTTTTTA
1 TTTTTTA
26706441 TTTTT
1 TTTTT
26706446 CAATTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:26706451 original size:15 final size:14
Alignment explanation
Indices: 26706420--26706454 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
26706410 TTTTTTCACT
*
26706420 TTTTTTATTTTTTA
1 TTTTTTATTTTTAA
26706434 TTTTTTATTTTTCAA
1 TTTTTTATTTTT-AA
26706449 TTTTTT
1 TTTTTT
26706455 GCTTATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTATTTTTAA
Found at i:26710573 original size:34 final size:31
Alignment explanation
Indices: 26710535--26710635 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 31
26710525 ACTTTTCCTA
26710535 AAAAATACCTTCTTTTAAAATTTTCATTTTCAAG
1 AAAAATA-CTTCTTTT-AAATTTT-ATTTTCAAG
* * *
26710569 AAAAATTGA-TAC-TTTCAATTTT-TTCTCAA-
1 AAAAA-T-ACTTCTTTTAAATTTTATTTTCAAG
26710598 AAAAATACTT-TTTTGAAATTTTTATTTTCAAG
1 AAAAATACTTCTTTT-AAA-TTTTATTTTCAAG
26710630 AAAAAT
1 AAAAAT
26710636 TGATACTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
27 1 0.02
28 5 0.09
29 7 0.13
30 10 0.19
31 6 0.11
32 12 0.23
33 3 0.06
34 7 0.13
35 1 0.02
36 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.45
Consensus pattern (31 bp):
AAAAATACTTCTTTTAAATTTTATTTTCAAG
Found at i:26710579 original size:117 final size:117
Alignment explanation
Indices: 26710449--26710888 Score: 482
Period size: 117 Copynumber: 3.7 Consensus size: 117
26710439 GCCTTTATAC
*** * *
26710449 AAAAAAAATTGATACTTTCAACTTTTCT-TTTAA-GCATTTTAAAATTTTTATTTTCAAGAAAAA
1 AAAAAAAATTGATACTTTCAACTTTTCTAAAAAATACTTTTTAAAATTTTTATTTTCAAG-AAAA
* * *
26710512 ATTAATATTTTTAACTTTTCCTAAAAAATACCTTCTTTTAAAATTTTCATTTTC
65 ATTGATACTTTTAACTTTTCCTAAAAAATACCTT-TTTTAAAATTTTCATTTTT
* * *
26710566 AAGAAAAATTGATACTTTCAATTTTTTCTCAAAAAAATACTTTTTTGAAATTTTTATTTTCAAGA
1 AAAAAAAATTGATACTTTCAA-CTTTTCT--AAAAAATAC-TTTTTAAAATTTTTATTTTCAAGA
* *
26710631 AAAATTGATACTTTTAACTTTTCTTCAAAAATAACC-TTTTTAAAATTTTCATTTTT
62 AAAATTGATACTTTTAACTTTTCCTAAAAAAT-ACCTTTTTTAAAATTTTCATTTTT
*** * *
26710687 AAAAAAAATTGATAC--TCAACTTTTCCTCCGAAATACTTTTTCAAAATTGTTGTTTTCAAGAAA
1 AAAAAAAATTGATACTTTCAACTTTT-CTAAAAAATACTTTTT-AAAATTTTTATTTTCAAGAAA
* * * *
26710750 AATTGATACTTTCAACTTTTCCTTAAAAATACCTTTTTTGAAATTTTTATTTTT
64 AATTGATACTTTTAACTTTTCCTAAAAAATACCTTTTTTAAAATTTTCATTTTT
*
26710804 AAAAAAAATTGATACTTTCAACTTTTTCTCAAAAAATA-TTTTTAAAGTTTTTACTTTT--AGAA
1 AAAAAAAATTGATACTTTCAAC-TTTTCT-AAAAAATACTTTTTAAAATTTTTA-TTTTCAAG-A
* *
26710866 AAAATTAATACTTTCAACTTTTC
62 AAAATTGATACTTTTAACTTTTC
26710889 TTTAAAAGTT
Statistics
Matches: 274, Mismatches: 33, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
116 8 0.03
117 106 0.39
118 40 0.15
119 22 0.08
120 9 0.03
121 34 0.12
122 31 0.11
123 24 0.09
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (117 bp):
AAAAAAAATTGATACTTTCAACTTTTCTAAAAAATACTTTTTAAAATTTTTATTTTCAAGAAAAA
TTGATACTTTTAACTTTTCCTAAAAAATACCTTTTTTAAAATTTTCATTTTT
Found at i:26710685 original size:60 final size:59
Alignment explanation
Indices: 26710452--26710930 Score: 430
Period size: 60 Copynumber: 8.1 Consensus size: 59
26710442 TTTATACAAA
** * *
26710452 AAAAATTGATACTTTCAACTTTTCTT---TTA-AGCATTTTAAAATTTTTATTTTCAAG
1 AAAAATTGATACTTTCAACTTTTCTTCAAAAATACCTTTTTAAAATTTTTATTTTCAAG
* * * * * *
26710507 AAAAAATTAATATTTTTAACTTTTCCTAAAAAATACCTTCTTTTAAAATTTTCATTTTCAAG
1 -AAAAATTGATACTTTCAACTTTTCTTCAAAAATACC-T-TTTTAAAATTTTTATTTTCAAG
* * *
26710569 AAAAATTGATACTTTCAA-TTTTTTCTCAAAAAAATACTTTTTTGAAATTTTTATTTTCAAG
1 AAAAATTGATACTTTCAACTTTTCT-TC--AAAAATACCTTTTTAAAATTTTTATTTTCAAG
* * * *
26710630 AAAAATTGATACTTTTAACTTTTCTTCAAAAATAACCTTTTTAAAATTTTCATTTTTAAA
1 AAAAATTGATACTTTCAACTTTTCTTCAAAAAT-ACCTTTTTAAAATTTTTATTTTCAAG
* ** * *
26710690 AAAAATTGATAC--TCAACTTTTCCTCCGAAATA-CTTTTTCAAAATTGTTGTTTTCAAG
1 AAAAATTGATACTTTCAACTTTTCTTCAAAAATACCTTTTT-AAAATTTTTATTTTCAAG
* * *
26710747 AAAAATTGATACTTTCAACTTTTCCTT-AAAAATACCTTTTTTGAAATTTTTATTTTTAAA
1 AAAAATTGATACTTTCAACTTTT-CTTCAAAAATACC-TTTTTAAAATTTTTATTTTCAAG
*
26710807 AAAAATTGATACTTTCAACTTTT-TCTCAAAAAATA--TTTTTAAAGTTTTTACTTTT--AG
1 AAAAATTGATACTTTCAACTTTTCT-TC-AAAAATACCTTTTTAAAATTTTTA-TTTTCAAG
* * * * *
26710864 AAAAAATTAATACTTTCAACTTTTCTTTAAAAGTTA-TTTTTTAAAGTTTTTATTTTCAAG
1 -AAAAATTGATACTTTCAACTTTTCTTCAAAA-ATACCTTTTTAAAATTTTTATTTTCAAG
*
26710924 GAAAATT
1 AAAAATT
26710931 AATTTTTTAG
Statistics
Matches: 347, Mismatches: 49, Indels: 51
0.78 0.11 0.11
Matches are distributed among these distances:
56 28 0.08
57 31 0.09
58 58 0.17
59 48 0.14
60 80 0.23
61 67 0.19
62 27 0.08
63 8 0.02
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (59 bp):
AAAAATTGATACTTTCAACTTTTCTTCAAAAATACCTTTTTAAAATTTTTATTTTCAAG
Found at i:26710902 original size:58 final size:57
Alignment explanation
Indices: 26710449--26710919 Score: 364
Period size: 61 Copynumber: 8.0 Consensus size: 57
26710439 GCCTTTATAC
* * * *
26710449 AAAAAAAATTGATACTTTCAACTTTTCTTT--TAA-GCATTTTAAAATTTTTATTTT
1 AAAAAAAATTGATACTTTCAACTTTTCTTTAAAAATACTTTTTAAAGTTTTTATTTT
* * * * * * *
26710503 CAAGAAAAAATTAATATTTTTAACTTTTCCTAAAAAATACCTTCTTTTAAAATTTTCATTTT
1 -AA-AAAAAATTGATACTTTCAACTTTTCTTTAAAAATA-C-T-TTTTAAAGTTTTTATTTT
* * **
26710565 CAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAAAATACTTTTTTGAAA-TTTTTATTTT
1 -AAAAAAAATTGATACTTTCAA-CTTTTCT-TTAAAAATAC-TTTTT-AAAGTTTTTATTTT
* * * * *
26710626 CAAGAAAAATTGATACTTTTAACTTTTCTTCAAAAATAACCTTTTTAAAATTTTCATTTTT
1 -AAAAAAAATTGATACTTTCAACTTTTCTTTAAAAAT-A-CTTTTTAAAGTTTTTA-TTTT
* *** * * *
26710687 AAAAAAAATTGATAC--TCAACTTTTCCTCCGAAATACTTTTTCAAAATTGTTGTTTT
1 AAAAAAAATTGATACTTTCAACTTTTCTTTAAAAATACTTTTT-AAAGTTTTTATTTT
* *
26710743 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATACCTTTTTTGAAA-TTTTTATTTTT
1 -AAAAAAAATTGATACTTTCAACTTTTCTTTAAAAATA-C-TTTTT-AAAGTTTTTA-TTTT
**
26710804 AAAAAAAATTGATACTTTCAACTTTTTCTCAAAAAATA-TTTTTAAAGTTTTTACTTTT
1 AAAAAAAATTGATACTTTCAAC-TTTTCTTTAAAAATACTTTTTAAAGTTTTTA-TTTT
* * * *
26710862 AGAAAAAATTAATACTTTCAACTTTTCTTTAAAAGTTATTTTTTAAAGTTTTTATTTT
1 AAAAAAAATTGATACTTTCAACTTTTCTTTAAAA-ATACTTTTTAAAGTTTTTATTTT
26710920 CAAGGAAAAT
Statistics
Matches: 344, Mismatches: 47, Indels: 47
0.79 0.11 0.11
Matches are distributed among these distances:
55 2 0.01
56 33 0.10
57 35 0.10
58 58 0.17
59 41 0.12
60 58 0.17
61 78 0.23
62 31 0.09
63 8 0.02
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.47
Consensus pattern (57 bp):
AAAAAAAATTGATACTTTCAACTTTTCTTTAAAAATACTTTTTAAAGTTTTTATTTT
Found at i:26711730 original size:18 final size:18
Alignment explanation
Indices: 26711691--26711732 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26711681 TTCTTTCACT
*
26711691 TTTTTGTGTCTGACTTTT
1 TTTTTGTGTCTGACTTTC
*
26711709 TTTTTGTTTCTGA-TTCTC
1 TTTTTGTGTCTGACTT-TC
26711727 TTTTTG
1 TTTTTG
26711733 ATAGGAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.05, C:0.12, G:0.14, T:0.69
Consensus pattern (18 bp):
TTTTTGTGTCTGACTTTC
Found at i:26714237 original size:14 final size:15
Alignment explanation
Indices: 26714220--26714258 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
26714210 GATAAAAAGT
26714220 AGAGAAAAAAA-AAA
1 AGAGAAAAAAACAAA
26714234 AGAGAAAAAAAGCAAA
1 AGAGAAAAAAA-CAAA
*
26714250 AAAGAAAAA
1 AGAGAAAAA
26714259 TGAATGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
16 11 0.50
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAAACAAA
Found at i:26714638 original size:14 final size:14
Alignment explanation
Indices: 26714617--26714653 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26714607 ACTAATAGAT
26714617 GAAAAAAAGAGAAAG
1 GAAAAAAA-AGAAAG
*
26714632 GAAAAAAAAGAATG
1 GAAAAAAAAGAAAG
26714646 GAAAAAAA
1 GAAAAAAA
26714654 TAAATAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (14 bp):
GAAAAAAAAGAAAG
Found at i:26715455 original size:63 final size:63
Alignment explanation
Indices: 26715374--26715555 Score: 238
Period size: 63 Copynumber: 2.9 Consensus size: 63
26715364 ATTAGTAGGC
* * *
26715374 GAAATTTGTTTTGAAATGGTTAGTGCCGAGAAACCTATGATTGGTGGCCAAGTGATGGAGGAT
1 GAAATTTGTTCTGAAATGGTTAGTGCCGAGAAACCTATGAGTGGTGACCAAGTGATGGAGGAT
* *
26715437 GAAATTTGTTCTAAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATGGAGGAT
1 GAAATTTGTTCTGAAATGGTTAGTGCCGAGAAACCTATGAGTGGTGACCAAGTGATGGAGGAT
* * * ** * * * *
26715500 AAAATTTATTCTGAAATGGCTAGTGTTGAGAAGCCTATAAATAGTGACCAAGTGAT
1 GAAATTTGTTCTGAAATGGTTAGTGCCGAGAAACCTATGAGTGGTGACCAAGTGAT
26715556 AAAAGATATA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 105 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (63 bp):
GAAATTTGTTCTGAAATGGTTAGTGCCGAGAAACCTATGAGTGGTGACCAAGTGATGGAGGAT
Found at i:26715574 original size:63 final size:63
Alignment explanation
Indices: 26715385--26715589 Score: 194
Period size: 63 Copynumber: 3.3 Consensus size: 63
26715375 AAATTTGTTT
* * * * * * ** * * **
26715385 TGAAATGGTTAGTGCCGAGAAACCTATGATTGGTGGCCAAGTGATGGAGGATGAAATTTGTTC
1 TGAAATGGCTAGTGCTGAGAAACCTATAAATAGTGACCAAGTGATAAAAGATAAAATTCATTC
* * * * * ** * *
26715448 TAAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATGGAGGATAAAATTTATTC
1 TGAAATGGCTAGTGCTGAGAAACCTATAAATAGTGACCAAGTGATAAAAGATAAAATTCATTC
* * *
26715511 TGAAATGGCTAGTGTTGAGAAGCCTATAAATAGTGACCAAGTGATAAAAGATATAATTCATTC
1 TGAAATGGCTAGTGCTGAGAAACCTATAAATAGTGACCAAGTGATAAAAGATAAAATTCATTC
26715574 TGAAATGGCTAGTGCT
1 TGAAATGGCTAGTGCT
26715590 AAAAAGCTCA
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 123 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (63 bp):
TGAAATGGCTAGTGCTGAGAAACCTATAAATAGTGACCAAGTGATAAAAGATAAAATTCATTC
Found at i:26716042 original size:22 final size:22
Alignment explanation
Indices: 26715986--26716042 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
26715976 AAAAATCCTC
*
26715986 AAATGAGAATCTTTGAGTTTTT
1 AAATGAGAATTTTTGAGTTTTT
* * *
26716008 AGATGAAAATTTTCGAG-TTTT
1 AAATGAGAATTTTTGAGTTTTT
26716029 AAATGAGAATTTTT
1 AAATGAGAATTTTT
26716043 TAGATGTGAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.44
Consensus pattern (22 bp):
AAATGAGAATTTTTGAGTTTTT
Found at i:26716200 original size:20 final size:20
Alignment explanation
Indices: 26716175--26716216 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
26716165 CCCAAATTTA
*
26716175 TTAAATGTGAACCTTTGAAC
1 TTAAATGAGAACCTTTGAAC
*
26716195 TTAAATGAGAAGCTTTGAAC
1 TTAAATGAGAACCTTTGAAC
26716215 TT
1 TT
26716217 TTGGATGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (20 bp):
TTAAATGAGAACCTTTGAAC
Found at i:26716559 original size:41 final size:40
Alignment explanation
Indices: 26716527--26716745 Score: 234
Period size: 41 Copynumber: 5.4 Consensus size: 40
26716517 AGAGAAACTT
26716527 TTTA-TTTTTCAAAGTTGTGATGTCTCTATTTAGAGGAGCA
1 TTTATTTTTTCAAAGTTGT-ATGTCTCTATTTAGAGGAGCA
*
26716567 TTTATTTTTTCAAAGTTATA-GTGCTTCTATTTAGAGGAGCA
1 TTTATTTTTTCAAAGTTGTATGT-C-TCTATTTAGAGGAGCA
*
26716608 TTTATTTTTTCAAAGTTGTAGTGCCTCTATTTAGAGGAGCA
1 TTTATTTTTTCAAAGTTGTA-TGTCTCTATTTAGAGGAGCA
* ** * *
26716649 TTTATTTTTT-AAAGTTGAGATACCTCTGTTTTGAGGAGCA
1 TTTATTTTTTCAAAGTTG-TATGTCTCTATTTAGAGGAGCA
* *
26716689 TTTA-TTTTTCAAAGTTACG-ATG-CTTCTGTTTAGAAGAGCA
1 TTTATTTTTTCAAAGTT--GTATGTC-TCTATTTAGAGGAGCA
*
26716729 TTTATTTTTTAAAAGTT
1 TTTATTTTTTCAAAGTT
26716746 ATTATGCCTC
Statistics
Matches: 157, Mismatches: 11, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
39 8 0.05
40 60 0.38
41 86 0.55
42 2 0.01
43 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (40 bp):
TTTATTTTTTCAAAGTTGTATGTCTCTATTTAGAGGAGCA
Found at i:26716626 original size:82 final size:81
Alignment explanation
Indices: 26716491--26716756 Score: 292
Period size: 82 Copynumber: 3.3 Consensus size: 81
26716481 AGTTTTTCAC
* * * * *
26716491 TTTTCAAAGTCATTGTGCCTCTGTTTAGAGAAAC-TTTTTATTTTTCAAAGTTGTGATGTCTCTA
1 TTTTCAAAGTTATAGTGCCTCTGTTTAGAGGAGCATTTAT-TTTTTCAAAGTTGTGATG-CTCTA
26716555 TTTAGAGGAGCATTTATT
64 TTTAGAGGAGCATTTATT
* *
26716573 TTTTCAAAGTTATAGTGCTTCTATTTAGAGGAGCATTTATTTTTTCAAAGTTGT-AGTGCCTCTA
1 TTTTCAAAGTTATAGTGCCTCTGTTTAGAGGAGCATTTATTTTTTCAAAGTTGTGA-TG-CTCTA
26716637 TTTAGAGGAGCATTTATT
64 TTTAGAGGAGCATTTATT
* * * ** *
26716655 TTTT-AAAGTT-GAGATACCTCTGTTTTGAGGAGCATTTA-TTTTTCAAAGTTACGATGCTTCTG
1 TTTTCAAAGTTATAG-TGCCTCTGTTTAGAGGAGCATTTATTTTTTCAAAGTTGTGATGC-TCTA
*
26716717 TTTAGAAGAGCATTTATT
64 TTTAGAGGAGCATTTATT
*
26716735 TTTTAAAAGTTATTA-TGCCTCT
1 TTTTCAAAGTTA-TAGTGCCTCT
26716757 TATTAGATTA
Statistics
Matches: 157, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
79 1 0.01
80 40 0.25
81 40 0.25
82 71 0.45
83 5 0.03
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (81 bp):
TTTTCAAAGTTATAGTGCCTCTGTTTAGAGGAGCATTTATTTTTTCAAAGTTGTGATGCTCTATT
TAGAGGAGCATTTATT
Found at i:26716675 original size:40 final size:40
Alignment explanation
Indices: 26716527--26716741 Score: 256
Period size: 40 Copynumber: 5.3 Consensus size: 40
26716517 AGAGAAACTT
* * *
26716527 TTTATTTTTCAAAGTTGTGATGTCTCTATTTAGAGGAGCA
1 TTTATTTTTTAAAGTTGAGATGCCTCTATTTAGAGGAGCA
* *
26716567 TTTATTTTTTCAAAGTT-ATAGTGCTTCTATTTAGAGGAGCA
1 TTTATTTTTT-AAAGTTGAGA-TGCCTCTATTTAGAGGAGCA
26716608 TTTATTTTTTCAAAGTTGTAG-TGCCTCTATTTAGAGGAGCA
1 TTTATTTTTT-AAAGTTG-AGATGCCTCTATTTAGAGGAGCA
* * *
26716649 TTTATTTTTTAAAGTTGAGATACCTCTGTTTTGAGGAGCA
1 TTTATTTTTTAAAGTTGAGATGCCTCTATTTAGAGGAGCA
* * * *
26716689 TTTATTTTTCAAAGTT-ACGATGCTTCTGTTTAGAAGAGCA
1 TTTATTTTTTAAAGTTGA-GATGCCTCTATTTAGAGGAGCA
26716729 TTTATTTTTTAAA
1 TTTATTTTTTAAA
26716742 AGTTATTATG
Statistics
Matches: 153, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 79 0.52
41 70 0.46
43 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (40 bp):
TTTATTTTTTAAAGTTGAGATGCCTCTATTTAGAGGAGCA
Found at i:26716763 original size:121 final size:122
Alignment explanation
Indices: 26716527--26716745 Score: 325
Period size: 121 Copynumber: 1.8 Consensus size: 122
26716517 AGAGAAACTT
* ** *
26716527 TTTATTTTTCAAAGTTGTGATGTCTCTATTTAGAGGAGCATTTATTTTTTCAAAGTTATAGTGCT
1 TTTATTTTTCAAAGTTGAGATACCTCTATTTAGAGGAGCATTTATTTTTTCAAAGTTAGAGTGCT
* *
26716592 TCTATTTAGAGGAGCATTTATTTTTTCAAAGTTGTAGTGCCTCTATTTAGAGGAGCA
66 TCTATTTAGAAGAGCATTTATTTTTTAAAAGTTGTAGTGCCTCTATTTAGAGGAGCA
* * *
26716649 TTTATTTTTTAAAGTTGAGATACCTCTGTTTTGAGGAGCATTTA-TTTTTCAAAGTTACGA-TGC
1 TTTATTTTTCAAAGTTGAGATACCTCTATTTAGAGGAGCATTTATTTTTTCAAAGTTA-GAGTGC
*
26716712 TTCTGTTTAGAAGAGCATTTATTTTTTAAAAGTT
65 TTCTATTTAGAAGAGCATTTATTTTTTAAAAGTT
26716746 ATTATGCCTC
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
121 47 0.55
122 39 0.45
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (122 bp):
TTTATTTTTCAAAGTTGAGATACCTCTATTTAGAGGAGCATTTATTTTTTCAAAGTTAGAGTGCT
TCTATTTAGAAGAGCATTTATTTTTTAAAAGTTGTAGTGCCTCTATTTAGAGGAGCA
Found at i:26719800 original size:3 final size:3
Alignment explanation
Indices: 26719786--26719826 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
26719776 AGCAGCCACC
*
26719786 AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26719827 TGATTTAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:26722274 original size:2 final size:2
Alignment explanation
Indices: 26722267--26722299 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26722257 GAGCTTTTAC
26722267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26722300 AGGAATCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26725885 original size:144 final size:144
Alignment explanation
Indices: 26725704--26725969 Score: 401
Period size: 144 Copynumber: 1.8 Consensus size: 144
26725694 ATCAATTTTA
* ** **
26725704 TAATTAAATTATTTTAAATTATTGTGAGTTGATAATTTACATAATAAATTAATAAATT-GAATGA
1 TAATTAAATCATTTTAAATTATTGCAAGCCGATAATTTACATAATAAATTAATAAATTAG-ATGA
* * *
26725768 TTTTTTTAA-TTAGATTAGTTTAATATCAATTAATAAATTTAGATAAAATATAAAAAAATTTTCA
65 TTTTTTTAACTGA-ATTAGTTCAATACCAATTAATAAATTTAGATAAAATATAAAAAAATTTTCA
26725832 AGTATTTAAAATAATC
129 AGTATTTAAAATAATC
* *
26725848 TAATTAAATCATTTTAAATTGTTGCAAGCCGATAATTTACATAATAAATTAGTAAATTAGATGAT
1 TAATTAAATCATTTTAAATTATTGCAAGCCGATAATTTACATAATAAATTAATAAATTAGATGAT
*
26725913 TTTTTTAACTGAATTAGTTCAATACCAATTAATAAATTTAGGTAAAATATAAAAAAA
66 TTTTTTAACTGAATTAGTTCAATACCAATTAATAAATTTAGATAAAATATAAAAAAA
26725970 AAACCCTTTA
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
144 106 0.97
145 3 0.03
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (144 bp):
TAATTAAATCATTTTAAATTATTGCAAGCCGATAATTTACATAATAAATTAATAAATTAGATGAT
TTTTTTAACTGAATTAGTTCAATACCAATTAATAAATTTAGATAAAATATAAAAAAATTTTCAAG
TATTTAAAATAATC
Found at i:26726225 original size:18 final size:16
Alignment explanation
Indices: 26726202--26726250 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
26726192 TTGATATCAT
26726202 AATTAAAAATAATTATAA
1 AATTAAAAAT-A-TATAA
*
26726220 AATTAATAATATATAA
1 AATTAAAAATATATAA
*
26726236 AATTAAATATATATA
1 AATTAAAAATATATA
26726251 TATATTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTAAAAATATATAA
Found at i:26726244 original size:14 final size:16
Alignment explanation
Indices: 26726209--26726261 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
26726199 CATAATTAAA
26726209 AATAAT-TATAAAATT
1 AATAATATATAAAATT
26726224 AATAATATATAAAATT
1 AATAATATATAAAATT
*
26726240 AA-ATATATATATATATT
1 AATA-ATATATA-AAATT
26726257 AATAA
1 AATAA
26726262 AAATGATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 7 0.21
16 18 0.55
17 7 0.21
18 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAATATATAAAATT
Found at i:26726251 original size:18 final size:18
Alignment explanation
Indices: 26726202--26726252 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
26726192 TTGATATCAT
*
26726202 AATTAAAAATA-ATTATAA
1 AATTAAATATATA-TATAA
26726220 AATT-AATA-ATATATAA
1 AATTAAATATATATATAA
26726236 AATTAAATATATATATA
1 AATTAAATATATATATA
26726253 TATTAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
16 10 0.34
17 8 0.28
18 11 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTAAATATATATATAA
Found at i:26726606 original size:27 final size:27
Alignment explanation
Indices: 26726550--26726606 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
26726540 TATTATATTT
*
26726550 ATTAAAATATAAATATTATTTATAACA
1 ATTAAAATATAAATATTATTTATAAAA
26726577 ATTAAAATATAAA-ATTAATTT-TAATAA
1 ATTAAAATATAAATATT-ATTTATAA-AA
26726604 ATT
1 ATT
26726607 GTTCTATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
ATTAAAATATAAATATTATTTATAAAA
Found at i:26726724 original size:18 final size:18
Alignment explanation
Indices: 26726703--26726742 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26726693 AAAAGTTTGA
26726703 ATTTAAAATTTTTTA-AAT
1 ATTT-AAATTTTTTATAAT
*
26726721 ATTTATATTTTTTATAAT
1 ATTTAAATTTTTTATAAT
26726739 ATTT
1 ATTT
26726743 TTTATTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTAAATTTTTTATAAT
Found at i:26729444 original size:16 final size:16
Alignment explanation
Indices: 26729423--26729477 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26729413 ATTAATATTA
26729423 TATTTGCATGATAATT
1 TATTTGCATGATAATT
* * *
26729439 TATTTGCCTAATATTT
1 TATTTGCATGATAATT
* *
26729455 TATTTACATGATTAATA
1 TATTTGCATGA-TAATT
26729472 TATTTG
1 TATTTG
26729478 TGTGATTTAT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
16 21 0.72
17 8 0.28
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (16 bp):
TATTTGCATGATAATT
Found at i:26729453 original size:32 final size:33
Alignment explanation
Indices: 26729415--26729477 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
26729405 TTTGCATTAT
* *
26729415 TAATATTATATTTGCATGA-TAATTTATTTGCC
1 TAATATTATATTTACATGATTAATATATTTGCC
*
26729447 TAATATTTTATTTACATGATTAATATATTTG
1 TAATATTATATTTACATGATTAATATATTTG
26729478 TGTGATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.52
Consensus pattern (33 bp):
TAATATTATATTTACATGATTAATATATTTGCC
Found at i:26729510 original size:20 final size:20
Alignment explanation
Indices: 26729465--26729557 Score: 114
Period size: 20 Copynumber: 4.6 Consensus size: 20
26729455 TATTTACATG
**
26729465 ATTAATATATTTGTGTGATTT
1 ATTAATATATTTGCATGA-TT
*
26729486 ATTAATATATTTGCATGACT
1 ATTAATATATTTGCATGATT
*
26729506 ATTAATATGTTTGCATGATT
1 ATTAATATATTTGCATGATT
*
26729526 ATTAATTTATTTGCATGATT
1 ATTAATATATTTGCATGATT
* *
26729546 ATCAATTTATTT
1 ATTAATATATTT
26729558 ATTTGTGTGA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
20 48 0.75
21 16 0.25
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.53
Consensus pattern (20 bp):
ATTAATATATTTGCATGATT
Found at i:26729662 original size:41 final size:41
Alignment explanation
Indices: 26729632--26729891 Score: 275
Period size: 41 Copynumber: 6.4 Consensus size: 41
26729622 ATTATTTTAT
26729632 TATTATATAT-TTAATTGCATGATAACATATTTATTTGCATG
1 TATTATAT-TGTTAATTGCATGATAACATATTTATTTGCATG
* * * *
26729673 TTTTATATTGTTAATTGCATGATAATATGTTTAATTGCATG
1 TATTATATTGTTAATTGCATGATAACATATTTATTTGCATG
* * *
26729714 TTTTATATTGTTAATTGCATGATAATATGTTTATTTGCATG
1 TATTATATTGTTAATTGCATGATAACATATTTATTTGCATG
* * *
26729755 -ATTTATGTTGTTAATTGCATGATTATATATTTATTTGCATG
1 TA-TTATATTGTTAATTGCATGATAACATATTTATTTGCATG
* * *
26729796 -ATTTATATTGTTAATTGCATGATTATATGTTTATTTGCATG
1 TA-TTATATTGTTAATTGCATGATAACATATTTATTTGCATG
* *
26729837 -ATT-TATAT-TTAATTGTATGACT-ATATATTTATTTGCATG
1 TATTATAT-TGTTAATTGCATGA-TAACATATTTATTTGCATG
26729876 -ATTTATATTGTTAATT
1 TA-TTATATTGTTAATT
26729892 ATACAACTAA
Statistics
Matches: 199, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 31 0.16
40 8 0.04
41 160 0.80
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (41 bp):
TATTATATTGTTAATTGCATGATAACATATTTATTTGCATG
Found at i:26729721 original size:82 final size:81
Alignment explanation
Indices: 26729634--26729891 Score: 378
Period size: 82 Copynumber: 3.2 Consensus size: 81
26729624 TATTTTATTA
* * *
26729634 TTATATAT-TTAATTGCATGATAACATATTTATTTGCATGTTTTATATTGTTAATTGCATGATAA
1 TTATAT-TGTTAATTGCATGATAATATGTTTATTTGCATGATTTATATTGTTAATTGCATGAT-A
* * *
26729698 TATGTTTAATTGCATGTT
64 TATATTTATTTGCATGAT
*
26729716 TTATATTGTTAATTGCATGATAATATGTTTATTTGCATGATTTATGTTGTTAATTGCATGATTAT
1 TTATATTGTTAATTGCATGATAATATGTTTATTTGCATGATTTATATTGTTAATTGCATGA-TAT
26729781 ATATTTATTTGCATGAT
65 ATATTTATTTGCATGAT
* *
26729798 TTATATTGTTAATTGCATGATTATATGTTTATTTGCATGATTTATA-T-TTAATTGTATGACTAT
1 TTATATTGTTAATTGCATGATAATATGTTTATTTGCATGATTTATATTGTTAATTGCATGA-TAT
26729861 ATATTTATTTGCATGAT
65 ATATTTATTTGCATGAT
26729878 TTATATTGTTAATT
1 TTATATTGTTAATT
26729892 ATACAACTAA
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
80 45 0.28
81 2 0.01
82 115 0.71
83 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (81 bp):
TTATATTGTTAATTGCATGATAATATGTTTATTTGCATGATTTATATTGTTAATTGCATGATATA
TATTTATTTGCATGAT
Found at i:26729785 original size:123 final size:121
Alignment explanation
Indices: 26729634--26729891 Score: 385
Period size: 123 Copynumber: 2.1 Consensus size: 121
26729624 TATTTTATTA
*
26729634 TTATATAT-TTAATTGCATGATAACATATTTATTTGCATGTTTTATATTGTTAATTGCATGATAA
1 TTATAT-TGTTAATTGCATGATAACATATTTATTTGCATGATTTATATTGTTAATTGCATGATAA
* *
26729698 TATGTTTAATTGCATGTTTTATATTGTTAATTGCATGA-TAATATGTTTATTTGCATGAT
65 TATGTTTAATTGCATGATTTATA-T-TTAATTGCATGACT-ATATATTTATTTGCATGAT
* * * *
26729757 TTATGTTGTTAATTGCATGATTATATATTTATTTGCATGATTTATATTGTTAATTGCATGATTAT
1 TTATATTGTTAATTGCATGATAACATATTTATTTGCATGATTTATATTGTTAATTGCATGATAAT
* *
26729822 ATGTTTATTTGCATGATTTATATTTAATTGTATGACTATATATTTATTTGCATGAT
66 ATGTTTAATTGCATGATTTATATTTAATTGCATGACTATATATTTATTTGCATGAT
26729878 TTATATTGTTAATT
1 TTATATTGTTAATT
26729892 ATACAACTAA
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
121 42 0.34
122 3 0.02
123 78 0.63
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (121 bp):
TTATATTGTTAATTGCATGATAACATATTTATTTGCATGATTTATATTGTTAATTGCATGATAAT
ATGTTTAATTGCATGATTTATATTTAATTGCATGACTATATATTTATTTGCATGAT
Found at i:26739803 original size:21 final size:18
Alignment explanation
Indices: 26739786--26739821 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26739776 AAATAAATTA
26739786 TTAAACATATTTTTTAAAT
1 TTAAA-ATATTTTTTAAAT
*
26739805 TTCAAATATTTTTTAAA
1 TTAAAATATTTTTTAAA
26739822 AAATAAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAAATATTTTTTAAAT
Found at i:26740945 original size:20 final size:23
Alignment explanation
Indices: 26740922--26740972 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 23
26740912 AAATATATTC
26740922 TTTAAAAAAAT-TTTA-TAAT-T
1 TTTAAAAAAATATTTATTAATAT
26740942 TTT-AAAAAATATTTATTAATAT
1 TTTAAAAAAATATTTATTAATAT
26740964 TTTAAAAAA
1 TTTAAAAAA
26740973 TAAAAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.26
20 7 0.26
21 4 0.15
22 4 0.15
23 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTAAAAAAATATTTATTAATAT
Found at i:26740955 original size:21 final size:22
Alignment explanation
Indices: 26740926--26740974 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
26740916 ATATTCTTTA
26740926 AAAAAAT-TTTA-TAAT-TTTT
1 AAAAAATATTTATTAATATTTT
26740945 AAAAAATATTTATTAATATTTT
1 AAAAAATATTTATTAATATTTT
26740967 AAAAAATA
1 AAAAAATA
26740975 AAAGGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.26
20 4 0.15
21 4 0.15
22 12 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAAAATATTTATTAATATTTT
Found at i:26741402 original size:20 final size:20
Alignment explanation
Indices: 26741379--26741427 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
26741369 TTAGTTTTTA
26741379 TTTTGTATTATTTTTTTTCC
1 TTTTGTATTATTTTTTTTCC
26741399 TTTTGTATTATTTTTTTTCC
1 TTTTGTATTATTTTTTTTCC
26741419 TTTTGTATT
1 TTTTGTATT
26741428 TTATGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.10, C:0.08, G:0.06, T:0.76
Consensus pattern (20 bp):
TTTTGTATTATTTTTTTTCC
Found at i:26741551 original size:19 final size:19
Alignment explanation
Indices: 26741520--26741581 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
26741510 ATGCATTTTA
26741520 TTTA-TATAGTTATATATTT
1 TTTATTATA-TTATATATTT
26741539 TTTATTATATTATA-ATTT
1 TTTATTATATTATATATTT
*
26741557 ATTTATCATTATTAT-TATTT
1 -TTTATTA-TATTATATATTT
26741577 TTTAT
1 TTTAT
26741582 CTTGTAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
18 4 0.11
19 20 0.53
20 14 0.37
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATTATATTATATATTT
Found at i:26741611 original size:19 final size:19
Alignment explanation
Indices: 26741589--26741657 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
26741579 TATCTTGTAA
*
26741589 TATTTTTTTGGATTTATCT
1 TATTTTTTTGCATTTATCT
** *
26741608 TATTTTATTTTTAATTATCT
1 TATTTT-TTTGCATTTATCT
* *
26741628 GTTTTTTTTTTCATTTATCT
1 -TATTTTTTTGCATTTATCT
*
26741648 AATTTTTTTG
1 TATTTTTTTG
26741658 TTTATCTGAT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 13 0.33
20 21 0.54
21 5 0.13
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (19 bp):
TATTTTTTTGCATTTATCT
Found at i:26741627 original size:20 final size:20
Alignment explanation
Indices: 26741602--26741656 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
26741592 TTTTTTGGAT
26741602 TTATCTTATTTTATTTTT-AA
1 TTATCTTATTTT-TTTTTCAA
*
26741622 TTATCTGT-TTTTTTTTTCAT
1 TTATCT-TATTTTTTTTTCAA
*
26741642 TTATCTAATTTTTTT
1 TTATCTTATTTTTTT
26741657 GTTTATCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 5 0.17
20 24 0.80
21 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (20 bp):
TTATCTTATTTTTTTTTCAA
Found at i:26742532 original size:10 final size:10
Alignment explanation
Indices: 26742517--26742566 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
26742507 CGTTCTAGGT
*
26742517 TTTTTTTTTC
1 TTTTTTTTTA
*
26742527 TTTTTTTTAA
1 TTTTTTTTTA
26742537 TTTTTTTTTA
1 TTTTTTTTTA
*
26742547 --TTTATTTA
1 TTTTTTTTTA
*
26742555 TTTTTATTTA
1 TTTTTTTTTA
26742565 TT
1 TT
26742567 AGATTAAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 7 0.21
10 27 0.79
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:26742540 original size:15 final size:15
Alignment explanation
Indices: 26742521--26742564 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
26742511 CTAGGTTTTT
*
26742521 TTTTTCTTTTTTTTAA
1 TTTTT-TTTTATTTAA
26742537 TTTTTTTTTATTT-A
1 TTTTTTTTTATTTAA
*
26742551 TTTATTTTTATTTA
1 TTTTTTTTTATTTA
26742565 TTAGATTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 13 0.52
15 7 0.28
16 5 0.20
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTATTTAA
Found at i:26742565 original size:14 final size:14
Alignment explanation
Indices: 26742527--26742566 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
26742517 TTTTTTTTTC
*
26742527 TTTTT-TTTAATTTT
1 TTTTTATTT-ATTTA
26742541 TTTTTATTTATTTA
1 TTTTTATTTATTTA
26742555 TTTTTATTTATT
1 TTTTTATTTATT
26742567 AGATTAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTATTTATTTA
Found at i:26742608 original size:21 final size:19
Alignment explanation
Indices: 26742584--26742691 Score: 69
Period size: 20 Copynumber: 5.4 Consensus size: 19
26742574 GCTTATTTAG
26742584 TATTCTTTTTACCTTTTTTTT
1 TATTCTTTTTA--TTTTTTTT
*
26742605 TATTTTTTTTATTTTTTTT
1 TATTCTTTTTATTTTTTTT
26742624 TACTT-TTCTTTATTTTATTTT
1 TA-TTCTT-TTTATTTT-TTTT
* * *
26742645 T-TTATTTTCACTTTTATTT
1 TATTCTTTTTA-TTTTTTTT
* *
26742664 TATTTTGTTTTATTATTTTAT
1 TATTCT-TTTTATT-TTTTTT
26742685 T-TTCTTT
1 TATTCTTT
26742692 AAATAAAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
19 23 0.32
20 24 0.34
21 24 0.34
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (19 bp):
TATTCTTTTTATTTTTTTT
Found at i:26742610 original size:5 final size:5
Alignment explanation
Indices: 26742597--26742687 Score: 77
Period size: 5 Copynumber: 18.8 Consensus size: 5
26742587 TCTTTTTACC
* * *
26742597 TTTTT TTTTA TTTT- TTTTA TTTTT TTTTA CTTTT- CTTTA TTTTA -TTT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
*
26742644 TTTTA TTTTCA CTTTTA TTTTA TTTTG TTTTA --TTA TTTTA TTTT
1 TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
26742688 CTTTAAATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.04
4 13 0.19
5 44 0.63
6 6 0.09
7 4 0.06
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:26742630 original size:30 final size:31
Alignment explanation
Indices: 26742589--26742691 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 31
26742579 TTTAGTATTC
26742589 TTTTTACCTTTTTTTTTATTTT-TTTTATTTT
1 TTTTTA-CTTTTTTTTTATTTTATTTTATTTT
* *
26742620 TTTTTAC-TTTTCTTTATTTTATTTT-TTTA
1 TTTTTACTTTTTTTTTATTTTATTTTATTTT
* * *
26742649 TTTTCACTTTTATTTTATTTTGTTTTATTATT
1 TTTTTACTTTTTTTTTATTTTATTTTATT-TT
*
26742681 TTATTTTCTTT
1 TT-TTTACTTT
26742692 AAATAAAAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
29 21 0.36
30 20 0.34
31 8 0.14
32 3 0.05
33 6 0.10
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.80
Consensus pattern (31 bp):
TTTTTACTTTTTTTTTATTTTATTTTATTTT
Found at i:26742639 original size:25 final size:24
Alignment explanation
Indices: 26742597--26742687 Score: 82
Period size: 23 Copynumber: 3.8 Consensus size: 24
26742587 TCTTTTTACC
* *
26742597 TTTTT-TTTTATTTTTTTTATTTT
1 TTTTTATTTTCTTTATTTTATTTT
26742620 TTTTTACTTTTCTTTATTTTA--TT
1 TTTTTA-TTTTCTTTATTTTATTTT
26742643 TTTTTATTTTCACTTTTATTTTATTTT
1 TTTTTATTTT--C-TTTATTTTATTTT
* *
26742670 GTTTTATTAT-TTTATTTT
1 TTTTTATTTTCTTTATTTT
26742688 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
22 4 0.07
23 21 0.37
24 1 0.02
25 21 0.37
27 10 0.18
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.81
Consensus pattern (24 bp):
TTTTTATTTTCTTTATTTTATTTT
Found at i:26742660 original size:35 final size:34
Alignment explanation
Indices: 26742602--26742688 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 34
26742592 TTACCTTTTT
*
26742602 TTTTATTTTTTTTATTTT-TTTTTACTTTT-CTTTA
1 TTTTA-TTTTTTTATTTTCCTTTTA-TTTTACTTTA
* *
26742636 TTTTATTTTTTTATTTTCACTTTTATTTTATTTTG
1 TTTTATTTTTTTATTTTC-CTTTTATTTTACTTTA
*
26742671 TTTTATTATTTTATTTTC
1 TTTTATTTTTTTATTTTC
26742689 TTTAAATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
33 12 0.26
34 9 0.20
35 25 0.54
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.79
Consensus pattern (34 bp):
TTTTATTTTTTTATTTTCCTTTTATTTTACTTTA
Found at i:26742784 original size:58 final size:58
Alignment explanation
Indices: 26742722--26743000 Score: 296
Period size: 58 Copynumber: 4.8 Consensus size: 58
26742712 ATTTTTGGGG
*
26742722 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTTTTAAGT
1 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTTTTAAGA
* * * *
26742780 AAAAGTTAAAAATATCAATTTTTCTTGAAAATCAAAGTTTCAAAAAAAAAATTTTGAA-A
1 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTC--CAAAAATATTTTTAAGA
* * * * ** * *
26742839 AAAAATTAAAAGTATCAATTTTCCTTAAAAAT-AAAATTTGAAAAAAGGATTTTTTAGA
1 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA-TATTTTTAAGA
* * * * ** *
26742897 AAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTCCAAAAAATATTTTTGGGG
1 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC-AAAAATATTTTTAAGA
* *
26742956 AAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAA-TTTCCAAAAA
1 AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA
26743001 AAATATTTTT
Statistics
Matches: 185, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
56 11 0.06
57 11 0.06
58 77 0.42
59 69 0.37
60 17 0.09
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (58 bp):
AAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTTTTAAGA
Found at i:26742817 original size:32 final size:32
Alignment explanation
Indices: 26742723--26742818 Score: 87
Period size: 32 Copynumber: 3.2 Consensus size: 32
26742713 TTTTTGGGGA
*
26742723 AAAGTTAAAAATATCAATTTTCCTTGAAAATC
1 AAAGTTAAAAATATCAATTTTTCTTGAAAATC
*** * * *
26742755 AAAGTTTCCAA-A--AATATTT-TT--AAGTA
1 AAAGTTAAAAATATCAATTTTTCTTGAAAATC
26742781 AAAGTTAAAAATATCAATTTTTCTTGAAAATC
1 AAAGTTAAAAATATCAATTTTTCTTGAAAATC
26742813 AAAGTT
1 AAAGTT
26742819 TCAAAAAAAA
Statistics
Matches: 45, Mismatches: 13, Indels: 12
0.64 0.19 0.17
Matches are distributed among these distances:
26 11 0.24
27 1 0.02
28 2 0.04
29 11 0.24
30 2 0.04
31 1 0.02
32 17 0.38
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.36
Consensus pattern (32 bp):
AAAGTTAAAAATATCAATTTTTCTTGAAAATC
Found at i:26743001 original size:117 final size:116
Alignment explanation
Indices: 26742703--26743035 Score: 393
Period size: 117 Copynumber: 2.8 Consensus size: 116
26742693 AATAAAAATA
* *
26742703 AAAAAATATATTTTTGGGGAAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC-AAA
1 AAAAAA-ATATTTTTGGGGAAAAGTT-AAAATATCAATTTTCCTTAAAAAT-AAAATTTCCAAAA
* * * * * *
26742767 AATATTTTTAAGTAAAAGTTAAAAATATCAATTTTTCTTGAAAATCAAAGTTTC
63 AAAATTTTTTAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTC
* * *** * *
26742821 AAAAAAAAAATTTTGAAAAAAAATTAAAAGTATCAATTTTCCTTAAAAATAAAATTT-GAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTAAAA-TATCAATTTTCCTTAAAAATAAAATTTCCAAAAAA
*
26742885 GGATTTTTTAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTC
65 -AATTTTTTAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTC
*
26742938 CAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAATTTCCAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTT-AAAATATCAATTTTCCTTAAAAATAAAATTTCCAAAAAA
* * *
26743002 AATATTTTTGGGGAAAAGTTGAAAGTATAAATTT
65 AAT-TTTTT-AGAAAAAGTTGAAAGTATCAATTT
26743036 CCAAAAAAAT
Statistics
Matches: 181, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
116 23 0.13
117 127 0.70
118 31 0.17
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (116 bp):
AAAAAAATATTTTTGGGGAAAAGTTAAAATATCAATTTTCCTTAAAAATAAAATTTCCAAAAAAA
ATTTTTTAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTC
Found at i:26743010 original size:59 final size:61
Alignment explanation
Indices: 26742702--26743035 Score: 336
Period size: 59 Copynumber: 5.7 Consensus size: 61
26742692 AAATAAAAAT
* *
26742702 AAAAAAATATATTTTTGGGGAAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAA-ATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
* * * *
26742764 ---AAAAATATTTTTAAGTAAAAGTTAAAAATATCAATTTTTCTTGAAAATCAAAGTTT-C
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
* ** * * * *
26742821 AAAAAAAA-AATTTTGAAAAAAAATT-AAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-G
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAA-TATCAATTTTCCTTGAAAATCAAAGTTTCC
* * * * *
26742879 AAAAAAGGAT-TTTTT-AGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTCC
1 AAAAAA-AATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
* *
26742939 --AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAA-TTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
* * *
26742996 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATAAATTT
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTT
26743036 CCAAAAAAAT
Statistics
Matches: 227, Mismatches: 32, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
57 8 0.04
58 101 0.44
59 113 0.50
60 5 0.02
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.34
Consensus pattern (61 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
Found at i:26743054 original size:41 final size:42
Alignment explanation
Indices: 26742986--26743076 Score: 157
Period size: 41 Copynumber: 2.2 Consensus size: 42
26742976 TTCCTTAAAA
*
26742986 ATAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGT
1 ATAAATTTCCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGT
26743028 ATAAATTTCC-AAAAAAATATTTTTGGGAAAAAGTTGAAAGT
1 ATAAATTTCCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGT
*
26743069 ATCAATTT
1 ATAAATTT
26743077 TTCTTAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 37 0.79
42 10 0.21
ACGTcount: A:0.47, C:0.05, G:0.14, T:0.33
Consensus pattern (42 bp):
ATAAATTTCCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGT
Found at i:26743059 original size:59 final size:59
Alignment explanation
Indices: 26742702--26743046 Score: 192
Period size: 58 Copynumber: 5.9 Consensus size: 59
26742692 AAATAAAAAT
* * ***
26742702 AAAAAAATATATTTTTGGGGAAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAA-ATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAAT-AAA-TTTCC
** * * * * ***
26742764 ---AAAAATATTTTTAAGTAAAAGTTAAAAATATCAATTTTTCTTGAAAATCAAAGTTT-C
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAAT-AAA-TTTCC
* *** * * ** *
26742821 AAAAAAAA-AATTTTGAAAAAAAATT-AAAAGTATCAATTTTCCTTAAAAATAAAATTT-G
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAA-TATCAAATTTCCAAAAAAAT-AAATTTCC
* * * * * * ***
26742879 AAAAAAGGAT-TTTTT-AGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTCC
1 AAAAAA-AATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAAT-AAA-TTTCC
* **
26742939 --AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTCC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAATAAATTTCC
*
26742996 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTAT-AAATTTCCAAAAAAATA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAATA
26743047 TTTTTGGGAA
Statistics
Matches: 236, Mismatches: 34, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
57 8 0.03
58 115 0.49
59 108 0.46
60 5 0.02
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (59 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAAATTTCCAAAAAAATAAATTTCC
Found at i:26743090 original size:58 final size:58
Alignment explanation
Indices: 26743028--26743194 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 58
26743018 AGTTGAAAGT
*
26743028 ATAAATTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTT-AATA
1 ATAAATTTTCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGAA-A
* *
26743086 ATAAATTTTGAAAAAAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTTCTTGAAA
1 ATAAATTTTCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAA
*
26743144 ATAAATTTTC-AAAAAATATTTTTAGGG-AAAAGTTGAAAGTATCGATTTTTC
1 ATAAATTTTCAAAAAAATATTTTT-GGGAAAAAGTTGAAAGTATCAATTTTTC
26743195 CTGCACAAGA
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
57 35 0.35
58 64 0.63
59 2 0.02
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.38
Consensus pattern (58 bp):
ATAAATTTTCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAA
Found at i:26743146 original size:100 final size:100
Alignment explanation
Indices: 26742934--26743134 Score: 307
Period size: 100 Copynumber: 2.0 Consensus size: 100
26742924 AAAATCAAAG
*
26742934 TTTCC-AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTCCAA
1 TTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTCCAA
* *
26742998 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATAAA
66 AAAAAATATTTTTGGGAAAAAATTGAAAGTATAAA
* * * **
26743033 TTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTAATAATAAATTT-TGA
1 TTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTCCAA
*
26743097 AAAAAATATTTTTGGGAAAAAATTGAAAGTATCAA
66 AAAAAATATTTTTGGGAAAAAATTGAAAGTATAAA
26743132 TTT
1 TTT
26743135 TTCTTGAAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 41 0.45
100 51 0.55
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (100 bp):
TTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTCCAA
AAAAAATATTTTTGGGAAAAAATTGAAAGTATAAA
Found at i:26750406 original size:5 final size:5
Alignment explanation
Indices: 26750396--26750454 Score: 56
Period size: 5 Copynumber: 12.6 Consensus size: 5
26750386 TCTTTTTACC
* *
26750396 TTTAT TTTA- -TTAT TTTATT TTTGT TTTAC TTT-T TTTAT TTTAT TTTA-
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
26750443 -TTAT TTTAT TTT
1 TTTAT TTTAT TTT
26750455 CTTTAAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
3 6 0.14
4 3 0.07
5 31 0.70
6 4 0.09
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:26750411 original size:20 final size:19
Alignment explanation
Indices: 26750396--26750454 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
26750386 TCTTTTTACC
26750396 TTTATTTTATTA-TTTTATT
1 TTTATTTTATTATTTTTA-T
*
26750415 TTTGTTTTACTT-TTTTTAT
1 TTTATTTTA-TTATTTTTAT
26750434 TTTATTTTATTA-TTTTAT
1 TTTATTTTATTATTTTTAT
26750452 TTT
1 TTT
26750455 CTTTAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
18 11 0.31
19 17 0.49
20 7 0.20
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTATTTTATTATTTTTAT
Found at i:26750414 original size:13 final size:13
Alignment explanation
Indices: 26750396--26750454 Score: 77
Period size: 13 Copynumber: 4.6 Consensus size: 13
26750386 TCTTTTTACC
26750396 TTTATTTTATTAT
1 TTTATTTTATTAT
*
26750409 TTTA-TTT-TTGT
1 TTTATTTTATTAT
*
26750420 TTTACTTTTTTTAT
1 TTTA-TTTTATTAT
26750434 TTTATTTTATTAT
1 TTTATTTTATTAT
26750447 TTTATTTT
1 TTTATTTT
26750455 CTTTAAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
11 7 0.17
12 3 0.08
13 23 0.57
14 7 0.17
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:26750853 original size:59 final size:59
Alignment explanation
Indices: 26750471--26750850 Score: 516
Period size: 58 Copynumber: 6.5 Consensus size: 59
26750461 ATAAAAATAA
*
26750471 AAAAATATATTTTTGGGGAAAAATTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
1 AAAAA-ATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
** * * **
26750531 -AAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTCGAAAATCAAAGTTTTAA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAG-TTTCC
* * *
26750590 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
* * *
26750649 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAA-TTTCT
1 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
* * *
26750706 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTAAAAAT-AAATTTTCA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
* * * *
26750764 AAAAAATATTTTTGGAGAAAAGTTTAAAGTATCAATTTTTCTTGAAAATAAAAGTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
* *
26750823 AAAAAATATTTTTAGAGAAAAGTTGAAA
1 AAAAAATATTTTTGGGGAAAAGTTGAAA
26750851 GTAAAATATT
Statistics
Matches: 286, Mismatches: 30, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
57 55 0.19
58 96 0.34
59 87 0.30
60 48 0.17
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (59 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATCAAAGTTTCC
Found at i:26750891 original size:28 final size:28
Alignment explanation
Indices: 26750825--26750881 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
26750815 AAGTTTCCAA
26750825 AAAATATTTTTAGAGAAAAGTTGAAAGT
1 AAAATATTTTTAGAGAAAAGTTGAAAGT
*
26750853 AAAATATTTTTGGAGAAAAGTTGAAAGT
1 AAAATATTTTTAGAGAAAAGTTGAAAGT
26750881 A
1 A
26750882 TCAATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (28 bp):
AAAATATTTTTAGAGAAAAGTTGAAAGT
Found at i:26752120 original size:29 final size:29
Alignment explanation
Indices: 26752088--26752145 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
26752078 TCAACACTTA
* * *
26752088 GAAACATGGACAAGATCTCACAAGTTTCT
1 GAAACATGAACAAAATCTCACAAATTTCT
*
26752117 GAAACATTAACAAAATCTCACAAATTTCT
1 GAAACATGAACAAAATCTCACAAATTTCT
26752146 TTTTTATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (29 bp):
GAAACATGAACAAAATCTCACAAATTTCT
Found at i:26754040 original size:2 final size:2
Alignment explanation
Indices: 26754033--26754060 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26754023 TAATGCATCC
26754033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26754061 GGAGAGAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26755196 original size:3 final size:3
Alignment explanation
Indices: 26755188--26755216 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26755178 ATTTTGGGCT
26755188 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26755217 CTCTGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26756521 original size:27 final size:28
Alignment explanation
Indices: 26756486--26756540 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
26756476 ATTCATATTT
26756486 TTTATTAAAAAATATATA-TT-AATATATA
1 TTTATTAAAAAA-AT-TACTTAAATATATA
26756514 TTTA-TAAAAAAATTACTTAAATATATA
1 TTTATTAAAAAAATTACTTAAATATATA
26756541 AGATAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 2 0.08
26 4 0.16
27 15 0.60
28 4 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
TTTATTAAAAAAATTACTTAAATATATA
Found at i:26765720 original size:2 final size:2
Alignment explanation
Indices: 26765715--26765745 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26765705 GGACAAATTA
26765715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26765746 AAGTGGTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26766051 original size:17 final size:17
Alignment explanation
Indices: 26766026--26766059 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26766016 TTATTAAATT
*
26766026 TTTATTAAAAATATTTA
1 TTTAATAAAAATATTTA
*
26766043 TTTAATAAATATATTTA
1 TTTAATAAAAATATTTA
26766060 AATTTTATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAATAAAAATATTTA
Found at i:26768870 original size:15 final size:16
Alignment explanation
Indices: 26768852--26768881 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26768842 AAAAATCAAA
26768852 AATTGATTT-GATTTG
1 AATTGATTTGGATTTG
26768867 AATTGATTTGGATTT
1 AATTGATTTGGATTT
26768882 TTTTATCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (16 bp):
AATTGATTTGGATTTG
Found at i:26769028 original size:20 final size:21
Alignment explanation
Indices: 26769003--26769059 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 21
26768993 GTATATATTT
* *
26769003 TATATTTAAATTTAT-TTAAA
1 TATATTAAAAATTATATTAAA
26769023 TATATTAAAAATTATATTAAAA
1 TATATTAAAAATTATATT-AAA
26769045 TAATATATAAAAATT
1 T-ATAT-TAAAAATT
26769060 TAAAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.42
21 2 0.06
22 4 0.13
23 4 0.13
24 8 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TATATTAAAAATTATATTAAA
Found at i:26769164 original size:16 final size:15
Alignment explanation
Indices: 26769136--26769165 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
26769126 ATTTTCATTT
26769136 AAATTTAAATTTTAA
1 AAATTTAAATTTTAA
26769151 AAATTTATAATTTTA
1 AAATTTA-AATTTTA
26769166 TGTATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATTTAAATTTTAA
Found at i:26769564 original size:16 final size:14
Alignment explanation
Indices: 26769532--26769626 Score: 52
Period size: 14 Copynumber: 6.6 Consensus size: 14
26769522 GTCCGAAGTG
*
26769532 ATAAATATAATAAT
1 ATAAAAATAATAAT
26769546 ATAAAAATAATATATT
1 ATAAAAATAATA-A-T
*
26769562 ATAATAAAT--TTAT
1 ATAA-AAATAATAAT
*
26769575 AGTAATAGATAATAAT
1 A-TAA-AAATAATAAT
*
26769591 -TAATAATTAATAAT
1 ATAA-AAATAATAAT
* *
26769605 ATAAAAAAAATCAT
1 ATAAAAATAATAAT
*
26769619 ATCAAAAT
1 ATAAAAAT
26769627 TTACTTGAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
13 2 0.03
14 44 0.70
15 5 0.08
16 8 0.13
17 4 0.06
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
ATAAAAATAATAAT
Found at i:26774341 original size:7 final size:7
Alignment explanation
Indices: 26774329--26774355 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26774319 AGTAATAAAC
26774329 AACAATT
1 AACAATT
26774336 AACAATT
1 AACAATT
26774343 AACAATT
1 AACAATT
26774350 AACAAT
1 AACAAT
26774356 GTAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AACAATT
Found at i:26774553 original size:27 final size:25
Alignment explanation
Indices: 26774498--26774554 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
26774488 GATCAATAAC
*
26774498 TAAAAAAATAATTAAAAAAATTTCAA
1 TAAAAAAATAATTAAAAAAAATT-AA
26774524 TAAAAAAATAACTTAACAAATAAATT-A
1 TAAAAAAATAA-TTAA-AAA-AAATTAA
26774551 TAAA
1 TAAA
26774555 TTTATTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 11 0.41
27 9 0.33
28 3 0.11
29 4 0.15
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (25 bp):
TAAAAAAATAATTAAAAAAAATTAA
Found at i:26774736 original size:33 final size:34
Alignment explanation
Indices: 26774679--26774750 Score: 137
Period size: 33 Copynumber: 2.1 Consensus size: 34
26774669 ATCAACTCTC
26774679 CTTTTTATCTTTTTGTCTCTCTATCTTGACTTTT
1 CTTTTTATCTTTTTGTCTCTCTATCTTGACTTTT
26774713 CTTTTTATCTTTTT-TCTCTCTATCTTGACTTTT
1 CTTTTTATCTTTTTGTCTCTCTATCTTGACTTTT
26774746 CTTTT
1 CTTTT
26774751 CTATTATCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 24 0.63
34 14 0.37
ACGTcount: A:0.08, C:0.21, G:0.04, T:0.67
Consensus pattern (34 bp):
CTTTTTATCTTTTTGTCTCTCTATCTTGACTTTT
Found at i:26774765 original size:33 final size:33
Alignment explanation
Indices: 26774695--26774765 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
26774685 ATCTTTTTGT
* ***
26774695 CTCTCTATCTTGACTTTTCTTTTTATCTTTTTT
1 CTCTCTATCTTGACTTTTCTTTTTATCTATCAG
26774728 CTCTCTATCTTGACTTTTCTTTTCTAT-TATCAG
1 CTCTCTATCTTGACTTTTCTTTT-TATCTATCAG
26774761 CTCTC
1 CTCTC
26774766 GACGCAACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 30 0.91
34 3 0.09
ACGTcount: A:0.11, C:0.25, G:0.04, T:0.59
Consensus pattern (33 bp):
CTCTCTATCTTGACTTTTCTTTTTATCTATCAG
Found at i:26780180 original size:5 final size:5
Alignment explanation
Indices: 26780170--26780194 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26780160 GCAATGATTG
26780170 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
26780195 TTTCAATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:26786246 original size:23 final size:24
Alignment explanation
Indices: 26786220--26786279 Score: 95
Period size: 23 Copynumber: 2.5 Consensus size: 24
26786210 GATGACTCAG
26786220 TAAATACTTGAATGGGAAT-TTAT
1 TAAATACTTGAATGGGAATATTAT
26786243 TAAATACTTGAATGGGAATAAATTAT
1 TAAATACTTGAATGGGAAT--ATTAT
26786269 TAAATACTTGA
1 TAAATACTTGA
26786280 TGACTCAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
23 19 0.56
26 15 0.44
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (24 bp):
TAAATACTTGAATGGGAATATTAT
Found at i:26799411 original size:24 final size:24
Alignment explanation
Indices: 26799384--26799434 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
26799374 GCCGGCCTCC
26799384 GTGACGAGGGCGTCACGAGGTTGG
1 GTGACGAGGGCGTCACGAGGTTGG
26799408 GTGACGAGGGCGTCACGAGGTTGG
1 GTGACGAGGGCGTCACGAGGTTGG
26799432 GTG
1 GTG
26799435 CGGGAGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.16, C:0.16, G:0.51, T:0.18
Consensus pattern (24 bp):
GTGACGAGGGCGTCACGAGGTTGG
Found at i:26810500 original size:62 final size:61
Alignment explanation
Indices: 26810421--26810590 Score: 189
Period size: 62 Copynumber: 2.8 Consensus size: 61
26810411 TTTTTTTTTT
* * * * *
26810421 TGGATTATTCAAGGTATTTTTGGCTAGAAATACTTTGAATAATCCTTTCATAAAAATTAAC
1 TGGATTATTCAAGGTATTTTTGGATAAAAATACTTTCAATAATCCTCTCATAAAAATTAAA
* * * *
26810482 TGGAGTTATTCAAGGTATTTTT-AATCAAAAATGCCTTCAATAATCCCCTCATAAAAATTAAA
1 TGGA-TTATTCAAGGTATTTTTGGAT-AAAAATACTTTCAATAATCCTCTCATAAAAATTAAA
* * * *
26810544 GGGAATTATTCAAGGTACTTTTGGTTAAAAATACTTTTAATAATCCT
1 TGG-ATTATTCAAGGTATTTTTGGATAAAAATACTTTCAATAATCCT
26810591 ATTTAATTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
61 5 0.06
62 81 0.92
63 2 0.02
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (61 bp):
TGGATTATTCAAGGTATTTTTGGATAAAAATACTTTCAATAATCCTCTCATAAAAATTAAA
Found at i:26810731 original size:64 final size:64
Alignment explanation
Indices: 26810599--26810760 Score: 159
Period size: 64 Copynumber: 2.5 Consensus size: 64
26810589 CTATTTAATT
* * * ** * * *
26810599 TTTTGTAAAGGATTATTCAATGCATTTTT-AGCCAACAACGCCTTCAATAATTTTTTTTAAAATT
1 TTTTGT-ATGGATTATTGAAAGCATTTTTGAGCCAACAACGCCTTCAATAATCCTCTCTAAAATA
* *
26810663 TTTTGTATGGATTATTGAAAGCATTTTTGATCGAA-AACGCCTTCAATAATCCCTCTCTAAAATA
1 TTTTGTATGGATTATTGAAAGCATTTTTGAGCCAACAACGCCTTCAATAAT-CCTCTCTAAAATA
* * * *
26810727 TTTTGAATAGATTATTGACAGTATTTTTGA-CCAA
1 TTTTGTATGGATTATTGAAAGCATTTTTGAGCCAA
26810761 AAATATCTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
63 37 0.46
64 44 0.54
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (64 bp):
TTTTGTATGGATTATTGAAAGCATTTTTGAGCCAACAACGCCTTCAATAATCCTCTCTAAAATA
Found at i:26810771 original size:64 final size:64
Alignment explanation
Indices: 26810656--26810777 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 64
26810646 TAATTTTTTT
* * * * * *
26810656 TAAAATTTTTTGTATGGATTATTGAAAGCATTTTTGATCGAAAACGCCTTCAATAATCCCTCTC
1 TAAAATATTTTGAATAGATTATTGAAAGCATTTTTGACCAAAAACACCTTCAATAATCCCTCTC
* * * *
26810720 TAAAATATTTTGAATAGATTATTGACAGTATTTTTGACCAAAAATATCTTCAATAATC
1 TAAAATATTTTGAATAGATTATTGAAAGCATTTTTGACCAAAAACACCTTCAATAATC
26810778 TCATTTAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (64 bp):
TAAAATATTTTGAATAGATTATTGAAAGCATTTTTGACCAAAAACACCTTCAATAATCCCTCTC
Found at i:26819167 original size:20 final size:19
Alignment explanation
Indices: 26819141--26819182 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
26819131 TTAATTCAAA
*
26819141 TTATATAT-TTTTTAATTT
1 TTATATATATTTTAAATTT
26819159 TTATATATATTTTAAATTT
1 TTATATATATTTTAAATTT
26819178 TTATA
1 TTATA
26819183 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATATATTTTAAATTT
Found at i:26819250 original size:13 final size:13
Alignment explanation
Indices: 26819219--26819269 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
26819209 ATTTTACTTA
26819219 AATATATTAAAAT
1 AATATATTAAAAT
**
26819232 TTTATATTAAAAT
1 AATATATTAAAAT
*
26819245 AATATATATAAATT
1 AATATAT-TAAAAT
*
26819259 AA-AAATTAAAA
1 AATATATTAAAA
26819270 ATAAATAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 4 0.13
13 19 0.63
14 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:26819303 original size:19 final size:19
Alignment explanation
Indices: 26819259--26819303 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
26819249 TATATAAATT
26819259 AAAAATTAAAAATAAATAA
1 AAAAATTAAAAATAAATAA
** * *
26819278 ATCAATTCAAACTAAATAA
1 AAAAATTAAAAATAAATAA
26819297 AAAAATT
1 AAAAATT
26819304 TCGATTCAAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATTAAAAATAAATAA
Found at i:26825929 original size:24 final size:22
Alignment explanation
Indices: 26825901--26825950 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
26825891 TCAATTTGAC
26825901 TTAAAATCAACAAAATATTATTTT
1 TTAAAAT--ACAAAATATTATTTT
* *
26825925 TT-AAATATAAATTATTATTTT
1 TTAAAATACAAAATATTATTTT
26825946 TTAAA
1 TTAAA
26825951 TATAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 15 0.65
22 2 0.09
23 4 0.17
24 2 0.09
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAAAATACAAAATATTATTTT
Found at i:26825942 original size:21 final size:21
Alignment explanation
Indices: 26825916--26825957 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26825906 ATCAACAAAA
26825916 TATTATTTTTTAAATATAAAT
1 TATTATTTTTTAAATATAAAT
26825937 TATTATTTTTTAAATATAAAT
1 TATTATTTTTTAAATATAAAT
26825958 ATAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTATTTTTTAAATATAAAT
Found at i:26826376 original size:13 final size:12
Alignment explanation
Indices: 26826358--26826392 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
26826348 TTATTTGTAT
26826358 TTTAATTTTTTAG
1 TTTAATTTTTT-G
26826371 TTTAATTTTTTG
1 TTTAATTTTTTG
*
26826383 CTTAATTTTT
1 TTTAATTTTT
26826393 ATTTTTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (12 bp):
TTTAATTTTTTG
Found at i:26827118 original size:24 final size:24
Alignment explanation
Indices: 26827042--26827174 Score: 99
Period size: 24 Copynumber: 5.8 Consensus size: 24
26827032 TTATTTCCTA
*
26827042 ATATTTGTTTGCATG---ATTAAT
1 ATATTTATTTGCATGATTATTAAT
* *
26827063 ATATTTATTT--ATG-TGATTTAT
1 ATATTTATTTGCATGATTATTAAT
*
26827084 -TAATATATTTGCATGATTATTAAT
1 AT-ATTTATTTGCATGATTATTAAT
*
26827108 ATATTTATTTGTATGACTATATT--T
1 ATATTTATTTGCATGA-T-TATTAAT
26827132 A-ATTTGA-TTGCATGATTATTAAT
1 ATATTT-ATTTGCATGATTATTAAT
*
26827155 ATATTTATTTGAATGATTAT
1 ATATTTATTTGCATGATTAT
26827175 ATATTTAATT
Statistics
Matches: 89, Mismatches: 9, Indels: 25
0.72 0.07 0.20
Matches are distributed among these distances:
19 3 0.03
20 1 0.01
21 25 0.28
22 1 0.01
23 17 0.19
24 36 0.40
25 2 0.02
26 4 0.04
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (24 bp):
ATATTTATTTGCATGATTATTAAT
Found at i:26827149 original size:47 final size:46
Alignment explanation
Indices: 26827057--26827176 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 46
26827047 TGTTTGCATG
* * *
26827057 ATTAATATATTTATTTATGTGATTTA-TTAATATATTTGCATGATT
1 ATTAATATATTTATTTGTATGATATATTTAATATATTTGCATGATT
*
26827102 ATTAATATATTTATTTGTATGACTATATTTAATTTGA-TTGCATGATT
1 ATTAATATATTTATTTGTATGA-TATATTTAATAT-ATTTGCATGATT
*
26827149 ATTAATATATTTATTTGAATGATTATAT
1 ATTAATATATTTATTTGTATGA-TATAT
26827177 ATTTAATTAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
45 20 0.30
46 3 0.05
47 42 0.64
48 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (46 bp):
ATTAATATATTTATTTGTATGATATATTTAATATATTTGCATGATT
Found at i:26827273 original size:31 final size:31
Alignment explanation
Indices: 26827227--26827296 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
26827217 GCATATTTTG
*
26827227 CATGGTTTATATATTATTATTTACATGATTA
1 CATGATTTATATATTATTATTTACATGATTA
* *
26827258 CATGATTTATGTATTATTATTTGCATGATTA
1 CATGATTTATATATTATTATTTACATGATTA
*
26827289 TAT-ATTTA
1 CATGATTTA
26827297 ATTGCATGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (31 bp):
CATGATTTATATATTATTATTTACATGATTA
Found at i:26827303 original size:20 final size:19
Alignment explanation
Indices: 26827278--26827384 Score: 55
Period size: 20 Copynumber: 5.5 Consensus size: 19
26827268 GTATTATTAT
26827278 TTGCATGATTATATATTTAA
1 TTGCATG-TTATATATTTAA
*
26827298 TTGCATGTT-TGT-TTGT-A
1 TTGCATGTTATATATT-TAA
*
26827315 -TG-AT-TTATATATTATTAT
1 TTGCATGTTATATA-T-TTAA
*
26827333 TTGCATGGTTTATATATTACTAT
1 TTGCAT-G-TTATATATT--TAA
*
26827356 TTACATGATTATATATTTAA
1 TTGCATG-TTATATATTTAA
26827376 TTGCATGTT
1 TTGCATGTT
26827385 TGTTTGCATG
Statistics
Matches: 67, Mismatches: 7, Indels: 27
0.66 0.07 0.27
Matches are distributed among these distances:
14 2 0.03
15 4 0.06
16 2 0.03
17 5 0.07
18 4 0.06
19 6 0.09
20 17 0.25
21 1 0.01
22 11 0.16
23 15 0.22
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.54
Consensus pattern (19 bp):
TTGCATGTTATATATTTAA
Found at i:26827344 original size:23 final size:23
Alignment explanation
Indices: 26827309--26827372 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
26827299 TGCATGTTTG
* * *
26827309 TTTGTATGATTTATATATTATTA
1 TTTGCATGGTTTATATATTACTA
26827332 TTTGCATGGTTTATATATTACTA
1 TTTGCATGGTTTATATATTACTA
* *
26827355 TTTACAT-GATTATATATT
1 TTTGCATGGTTTATATATT
26827373 TAATTGCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 10 0.28
23 26 0.72
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (23 bp):
TTTGCATGGTTTATATATTACTA
Found at i:26827370 original size:78 final size:78
Alignment explanation
Indices: 26827258--26827412 Score: 247
Period size: 78 Copynumber: 2.0 Consensus size: 78
26827248 TACATGATTA
* * * *
26827258 CATGATTTATGTATTATTATTTGCATGATTATATATTTAATTGCATGTTTGTTTGTATGATTTAT
1 CATGATTTATATATTACTATTTACATGATTATATATTTAATTGCATGTTTGTTTGCATGATTTAT
26827323 ATATTATTATTTG
66 ATATTATTATTTG
* *
26827336 CATGGTTTATATATTACTATTTACATGATTATATATTTAATTGCATGTTTGTTTGCATGGTTTAT
1 CATGATTTATATATTACTATTTACATGATTATATATTTAATTGCATGTTTGTTTGCATGATTTAT
*
26827401 ATATTTTTATTT
66 ATATTATTATTT
26827413 ATATGATCAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.56
Consensus pattern (78 bp):
CATGATTTATATATTACTATTTACATGATTATATATTTAATTGCATGTTTGTTTGCATGATTTAT
ATATTATTATTTG
Found at i:26827391 original size:55 final size:55
Alignment explanation
Indices: 26827332--26827440 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
26827322 TATATTATTA
* *
26827332 TTTGCATGGTTTATATATTACTATTTACATGATTATATATTTAATTGCATGTTTG
1 TTTGCATGGTTTATATATTACTATTTACATGATCATACATTTAATTGCATGTTTG
** *
26827387 TTTGCATGGTTTATATATTTTTATTTATATGATCATACATTTAATTGCATGTTT
1 TTTGCATGGTTTATATATTACTATTTACATGATCATACATTTAATTGCATGTTT
26827441 ATTTATATGA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (55 bp):
TTTGCATGGTTTATATATTACTATTTACATGATCATACATTTAATTGCATGTTTG
Found at i:26827402 original size:109 final size:113
Alignment explanation
Indices: 26827159--26827406 Score: 312
Period size: 115 Copynumber: 2.2 Consensus size: 113
26827149 ATTAATATAT
*
26827159 TTATTTGAATGATTATATATTTAATTACATGTTTATTTGTATGATTTTATATTTAATTGCATATT
1 TTATTTGCATGATTATATATTTAATTACATGTTTATTTGTATGATTTTATATTTAATT--ATATT
* *
26827224 TTGCATGGTTTATATATTATTATTTACATGATTACATGATTTATGTATTA
64 TTGCATGGTTTATATATTACTATTTACATGATTACATGATTTATGCATTA
* *
26827274 TTATTTGCATGATTATATATTTAATTGCATGTTTGTTTGTATGA-TTTATA--T-ATTAT-TATT
1 TTATTTGCATGATTATATATTTAATTACATGTTTATTTGTATGATTTTATATTTAATTATAT-TT
*
26827334 TGCATGGTTTATATATTACTATTTACATGATTATAT-ATTTAATTGCATGT-
65 TGCATGGTTTATATATTACTATTTACATGATTACATGATTT-A-TGCAT-TA
* *
26827384 TTGTTTGCATGGTTTATATATTT
1 TTATTTGCAT-GATTATATATTT
26827407 TTATTTATAT
Statistics
Matches: 120, Mismatches: 8, Indels: 14
0.85 0.06 0.10
Matches are distributed among these distances:
108 5 0.04
109 39 0.32
110 13 0.11
111 15 0.12
112 1 0.01
114 6 0.05
115 41 0.34
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.55
Consensus pattern (113 bp):
TTATTTGCATGATTATATATTTAATTACATGTTTATTTGTATGATTTTATATTTAATTATATTTT
GCATGGTTTATATATTACTATTTACATGATTACATGATTTATGCATTA
Found at i:26827447 original size:32 final size:33
Alignment explanation
Indices: 26827406--26827476 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
26827396 TTTATATATT
26827406 TTTATTTATATGATCATACA-T-TTAATTGCATG
1 TTTATTTATATGAT-ATACACTGTTAATTGCATG
*
26827438 TTTATTTATATGATTTACACTGTTAATTGCATG
1 TTTATTTATATGATATACACTGTTAATTGCATG
*
26827471 ATTATT
1 TTTATT
26827477 AATTTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
31 4 0.11
32 15 0.43
33 16 0.46
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (33 bp):
TTTATTTATATGATATACACTGTTAATTGCATG
Found at i:26828973 original size:38 final size:40
Alignment explanation
Indices: 26828902--26828976 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
26828892 TGTAAATTTA
* *
26828902 TATATTGTTTCTTATGTATATTATGTATATACTAACCCTT
1 TATATTGTTTCTTATATATAGTATGTATATACTAACCCTT
26828942 TATATT-TTTCCTTATATATAGTATGT-T-TACTAACC
1 TATATTGTTT-CTTATATATAGTATGTATATACTAACC
26828977 ATTTTCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 8 0.25
39 4 0.12
40 20 0.62
ACGTcount: A:0.28, C:0.13, G:0.07, T:0.52
Consensus pattern (40 bp):
TATATTGTTTCTTATATATAGTATGTATATACTAACCCTT
Found at i:26829068 original size:20 final size:20
Alignment explanation
Indices: 26829029--26829068 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26829019 CTTCTTCTTG
*
26829029 CATTCATGCATATATGCATT
1 CATTCATGCATATATCCATT
26829049 CATTCATGCAT-TATTCCATT
1 CATTCATGCATATA-TCCATT
26829069 TCACTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (20 bp):
CATTCATGCATATATCCATT
Found at i:26829379 original size:139 final size:138
Alignment explanation
Indices: 26829220--26829642 Score: 381
Period size: 139 Copynumber: 3.2 Consensus size: 138
26829210 TTCATTTGCC
* *
26829220 TTTTCAATTTCGTATATAGTTATGGATATAAATTCTTGTTTTTCACTATTTATTGCATATATGTA
1 TTTTCAATTTTGTACATAGTTATGGATATAAATTCTTGTTTTTCACTATTTATTGCATATATGTA
**
26829285 TTTGCATATACATTTTTATCCATGTAAACATTTTTGTGCGTACATTATTTTATTTGTTTGGAAAA
66 TTTGCATATACATTTTTATCCATGTAAACATTTTTGTATGTACATTATTTTATTTGTTTGGAAAA
26829350 CTCTTTACA
131 -TCTTTACA
* * * * * *
26829359 TTTTCAATTTTGTACATAGTTTTAGATATAAGTTATTGTTTTTCACTATGTATTGCATACATGTA
1 TTTTCAATTTTGTACATAGTTATGGATATAAATTCTTGTTTTTCACTATTTATTGCATATATGTA
* * * * * *
26829424 TTTACATATAAATTTTTATCC-------C-TTTTTGTATGCACATTATTTTATTGGCTTAGGAGA
66 TTTGCATATACATTTTTATCCATGTAAACATTTTTGTATGTACATTATTTTATTTG-TTTGGAAA
*
26829481 ATCTTTCCA
130 ATCTTTACA
* * * * * * * * *
26829490 TTTTCAGTTTTATACATAATTGTGAATATGAATTCTT-ATTGT---TA-TTA-TGCAT-TATATA
1 TTTTCAATTTTGTACATAGTTATGGATATAAATTCTTGTTTTTCACTATTTATTGCATATATGTA
* * * * * **
26829548 CTTGTATATACATTTTTATCCATGTAAATATTTTTGTATGTATATTATATTATTTGTTTGGGGTA
66 TTTGCATATACATTTTTATCCATGTAAACATTTTTGTATGTACATTATTTTATTTGTTT-GGAAA
* *
26829613 ATCTTTGCC
130 ATCTTTACA
* *
26829622 TTTTTAATTTTGTAAATAGTT
1 TTTTCAATTTTGTACATAGTT
26829643 GTGAACATGA
Statistics
Matches: 224, Mismatches: 50, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
124 21 0.09
125 5 0.02
126 2 0.01
127 2 0.01
130 3 0.01
131 59 0.26
132 56 0.25
139 76 0.34
ACGTcount: A:0.27, C:0.10, G:0.11, T:0.51
Consensus pattern (138 bp):
TTTTCAATTTTGTACATAGTTATGGATATAAATTCTTGTTTTTCACTATTTATTGCATATATGTA
TTTGCATATACATTTTTATCCATGTAAACATTTTTGTATGTACATTATTTTATTTGTTTGGAAAA
TCTTTACA
Found at i:26829689 original size:123 final size:123
Alignment explanation
Indices: 26829557--26829864 Score: 476
Period size: 122 Copynumber: 2.5 Consensus size: 123
26829547 ACTTGTATAT
* *
26829557 ACATTTTTATCCATGTAAATATTTTTGTATGTATATTATATTATTTGTTTGGGGTAATCTTTGCC
1 ACATTTTTATCCATGTAAACATTTTTGCATGTATATTATATTATTTGTTTGGGGTAATCTTTGCC
* * *
26829622 TTTTTAATTTTGTAAATAGTTGTGAACATGAATGCAATGCATATATGTATTTGCAAAC
66 TTTTCAATTTTGTAAATAGTTGTAAACATGAATGCAATGCATACATGTATTTGCAAAC
* * *
26829680 ACATTTTTATCCATATAAACATTTTTGCATGTATATTATATTATTTGTTT-GGGCAATTTTTGCC
1 ACATTTTTATCCATGTAAACATTTTTGCATGTATATTATATTATTTGTTTGGGGTAATCTTTGCC
* * *
26829744 TTTTCAATTTTGTAAATAGTTGTAAATATGAATGCATTGCATACATGTATTTGCATAC
66 TTTTCAATTTTGTAAATAGTTGTAAACATGAATGCAATGCATACATGTATTTGCAAAC
* *
26829802 ACATTTTTATCCATGTAAACATTTTTACATGTACATTAT-TTCATTTGTTTGGGGTAATCTTTG
1 ACATTTTTATCCATGTAAACATTTTTGCATGTATATTATATT-ATTTGTTTGGGGTAATCTTTG
26829865 GTTCATAAAT
Statistics
Matches: 167, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
121 2 0.01
122 108 0.65
123 57 0.34
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (123 bp):
ACATTTTTATCCATGTAAACATTTTTGCATGTATATTATATTATTTGTTTGGGGTAATCTTTGCC
TTTTCAATTTTGTAAATAGTTGTAAACATGAATGCAATGCATACATGTATTTGCAAAC
Found at i:26829834 original size:16 final size:17
Alignment explanation
Indices: 26829802--26829834 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26829792 ATTTGCATAC
26829802 ACATTTTTATCCATGTAA
1 ACATTTTTA-CCATGTAA
26829820 ACATTTTTA-CATGTA
1 ACATTTTTACCATGTA
26829835 CATTATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (17 bp):
ACATTTTTACCATGTAA
Found at i:26831950 original size:16 final size:15
Alignment explanation
Indices: 26831921--26831949 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26831911 TTAGATAAAA
26831921 TTGAAAAACTTTTTG
1 TTGAAAAACTTTTTG
26831936 TTGAAAAACTTTTT
1 TTGAAAAACTTTTT
26831950 TTAAATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.48
Consensus pattern (15 bp):
TTGAAAAACTTTTTG
Found at i:26832027 original size:23 final size:20
Alignment explanation
Indices: 26831994--26832102 Score: 66
Period size: 21 Copynumber: 5.3 Consensus size: 20
26831984 TCATGTAAAT
*
26831994 AATACCATGCAATAATGATATA
1 AATATCATGCAATAAT-ATA-A
26832016 ATATATCATGCAATTAATATAA
1 A-ATATCATGCAA-TAATATAA
* * *
26832038 ACTATCATGCAATTAAGAAAA
1 AATATCATGCAA-TAATATAA
*
26832059 AATATCAGGCAAATTAAT-TAA
1 AATATCATGC-AA-TAATATAA
*
26832080 CA-ATCATGCAA-AA-AT-A
1 AATATCATGCAATAATATAA
26832096 AATATCA
1 AATATCA
26832103 CAAATAAAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
16 2 0.03
17 7 0.10
19 2 0.03
20 6 0.08
21 28 0.39
22 9 0.13
23 13 0.18
24 4 0.06
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (20 bp):
AATATCATGCAATAATATAA
Done.