Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 157 of 160
Found at i:32307477 original size:20 final size:21
Alignment explanation
Indices: 32307452--32307502 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
32307442 TATCGAATAT
32307452 GAATCTTT-AAATTCAAATGA
1 GAATCTTTGAAATTCAAATGA
**
32307472 GAATCTTTGAGTTTCAAATGA
1 GAATCTTTGAAATTCAAATGA
*
32307493 GAATATTTGA
1 GAATCTTTGA
32307503 GATGTAAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (21 bp):
GAATCTTTGAAATTCAAATGA
Found at i:32307489 original size:21 final size:21
Alignment explanation
Indices: 32307463--32307503 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32307453 AATCTTTAAA
*
32307463 TTCAAATGAGAATCTTTGAGT
1 TTCAAATGAGAATATTTGAGT
32307484 TTCAAATGAGAATATTTGAG
1 TTCAAATGAGAATATTTGAG
32307504 ATGTAAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (21 bp):
TTCAAATGAGAATATTTGAGT
Found at i:32307712 original size:114 final size:114
Alignment explanation
Indices: 32307568--32307826 Score: 401
Period size: 114 Copynumber: 2.3 Consensus size: 114
32307558 TCAAACTCTC
* * * *
32307568 GGATATGAATCTCCAAAATTCAAACGAAAAGCTTTGAACTCAACTTTTAGATGCGAATTTTTAAA
1 GGATGTGAATCTCCAAAATTCAAACAAAAAGCTTTGAACTCAACTTTTAGATGCAAATTTCTAAA
*
32307633 TTTTTAAATGAGAACCTTTGAACTTAGATGTGAAACTCTAAGATTTTTT
66 TTTTTAAATGAGAACCTTTGAACATAGATGTGAAACTCTAAGATTTTTT
* *
32307682 GGATGTGAATCTCCAAAATTCAAACAAAAAGCTTTGAACTCAATTTTTTGATGCAAATTTCTAAA
1 GGATGTGAATCTCCAAAATTCAAACAAAAAGCTTTGAACTCAACTTTTAGATGCAAATTTCTAAA
* *
32307747 TTTTTGAGTGAGAACCTTTGAACATAGATGTGAAACTCTAAGATTTTTT
66 TTTTTAAATGAGAACCTTTGAACATAGATGTGAAACTCTAAGATTTTTT
* * *
32307796 GAATGTGAACCTTCAAAATTCAAACGAAAAA
1 GGATGTGAATCTCCAAAATTCAAAC-AAAAA
32307827 TTTTGAATTT
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
114 127 0.96
115 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (114 bp):
GGATGTGAATCTCCAAAATTCAAACAAAAAGCTTTGAACTCAACTTTTAGATGCAAATTTCTAAA
TTTTTAAATGAGAACCTTTGAACATAGATGTGAAACTCTAAGATTTTTT
Found at i:32308177 original size:40 final size:41
Alignment explanation
Indices: 32308126--32308255 Score: 129
Period size: 44 Copynumber: 3.1 Consensus size: 41
32308116 GGTGTCTTTA
* * *
32308126 TTTAAATGAGC-ATTTACTTTTCAAAGTTATGGTGCCTCTG
1 TTTAAAGGAGCTATTTATTTTTCAAAGTTATGGAGCCTCTG
* * *
32308166 TTTAGAA-GAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTG
1 TTTA-AAGGAGCTATTTA-TTTTTCAAAGTTATGGAGCCTCTG
* *
32308208 TTTAAAGGAGCTTTATTTATTTTGTCAAAGTTGTTGAGCCTCTG
1 TTTAAAGGAGC--TATTTATTTT-TCAAAGTTATGGAGCCTCTG
32308252 TTTA
1 TTTA
32308256 GAAAAGCTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
40 8 0.10
41 9 0.12
42 28 0.36
43 4 0.05
44 29 0.37
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (41 bp):
TTTAAAGGAGCTATTTATTTTTCAAAGTTATGGAGCCTCTG
Found at i:32308237 original size:44 final size:43
Alignment explanation
Indices: 32308143--32308339 Score: 200
Period size: 44 Copynumber: 4.5 Consensus size: 43
32308133 GAGCATTTAC
* * * *
32308143 TTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGC--AATTTATT
1 TTTTCAAAGTTGTTGAGCCTCTGTTTA-AAGAGCTTTATTTATT
32308185 TTTTCAAAGTTGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
1 TTTTCAAAGTTGTTGAGCCTCTGTTTAAA-GAGCTTTATTTATT
* * *
32308229 TTGTCAAAGTTGTTGAGCCTCTGTTTAGAAAAGCTTTGTTTATT
1 TTTTCAAAGTTGTTGAGCCTCTGTTTA-AAGAGCTTTATTTATT
* * * * *
32308273 TTTTCAAGGTCGTTGGGCCTTTGTTTAAAAGAGCTTTGTTTATGT
1 TTTTCAAAGTTGTTGAGCCTCTGTTT-AAAGAGCTTTATTTAT-T
* **
32308318 TTCTCAAAGTCATTGAGCCTCT
1 TTTTCAAAGTTGTTGAGCCTCT
32308340 ACTTAGAGGA
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.02
42 28 0.21
44 80 0.61
45 21 0.16
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (43 bp):
TTTTCAAAGTTGTTGAGCCTCTGTTTAAAGAGCTTTATTTATT
Found at i:32308307 original size:88 final size:85
Alignment explanation
Indices: 32308137--32308339 Score: 235
Period size: 88 Copynumber: 2.3 Consensus size: 85
32308127 TTAAATGAGC
* * * * *
32308137 ATTTACTTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTTCAAAGTTGTTGAG
1 ATTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAAAAGCAATTTATTTTTTCAAAGTCGTTGAG
*
32308202 CCTCTGTTTAAAGGAGCTTT
66 CCTCTGTTTAAAAGAGCTTT
* ** *
32308222 ATTTATTTTGTCAAAGTTGTTGAGCCTCTGTTTAGAAAAGCTTTGTTTATTTTTTCAAGGTCGTT
1 ATTTATTTT-TCAAAGTTATTGAGCCTCTGTTTAGAAAAGC--AATTTATTTTTTCAAAGTCGTT
* *
32308287 GGGCCTTTGTTTAAAAGAGCTTT
63 GAGCCTCTGTTTAAAAGAGCTTT
* *
32308310 GTTTATGTTTCTCAAAGTCATTGAGCCTCT
1 ATTTAT-TTT-TCAAAGTTATTGAGCCTCT
32308340 ACTTAGAGGA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
85 8 0.08
86 27 0.28
88 43 0.44
89 20 0.20
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (85 bp):
ATTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAAAAGCAATTTATTTTTTCAAAGTCGTTGAG
CCTCTGTTTAAAAGAGCTTT
Found at i:32308446 original size:17 final size:17
Alignment explanation
Indices: 32308424--32308462 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
32308414 TCAAACACAG
32308424 AAAAAAATAGAAG-ATAA
1 AAAAAAATAGAAGCA-AA
32308441 AAAAAAATAGAAGCAAA
1 AAAAAAATAGAAGCAAA
32308458 AAAAA
1 AAAAA
32308463 GATTCAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.08
Consensus pattern (17 bp):
AAAAAAATAGAAGCAAA
Found at i:32308715 original size:15 final size:15
Alignment explanation
Indices: 32308678--32308718 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
32308668 AAATTTTTTT
32308678 AGAG-AAAGG-AGAG
1 AGAGAAAAGGAAGAG
*
32308691 AGAAAAAAAGGAAGAG
1 AG-AGAAAAGGAAGAG
32308707 AGAGAAAAGGAA
1 AGAGAAAAGGAA
32308719 AGCAGGCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 1 0.04
15 14 0.61
16 6 0.26
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (15 bp):
AGAGAAAAGGAAGAG
Found at i:32309012 original size:13 final size:13
Alignment explanation
Indices: 32308994--32309023 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32308984 TTTTTTTTTA
*
32308994 ATTTTATTTGTTT
1 ATTTTATTTATTT
32309007 ATTTTATTTATTT
1 ATTTTATTTATTT
32309020 ATTT
1 ATTT
32309024 ATTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:32309018 original size:17 final size:18
Alignment explanation
Indices: 32308996--32309032 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32308986 TTTTTTTAAT
*
32308996 TTTATTTGTTTATT-TTA
1 TTTATTTATTTATTATTA
32309013 TTTATTTATTTATTATTA
1 TTTATTTATTTATTATTA
32309031 TT
1 TT
32309033 ATTAGAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTATTTATTTATTATTA
Found at i:32309072 original size:21 final size:21
Alignment explanation
Indices: 32309048--32309089 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32309038 AATTATTAGA
32309048 ATTATTTGGTATT-TTTTATTT
1 ATTATTT-GTATTATTTTATTT
*
32309069 ATTATTTTTATTATTTTATTT
1 ATTATTTGTATTATTTTATTT
32309090 TTGTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
ATTATTTGTATTATTTTATTT
Found at i:32309187 original size:60 final size:55
Alignment explanation
Indices: 32309116--32309605 Score: 401
Period size: 60 Copynumber: 8.2 Consensus size: 55
32309106 ACGATTTTCC
*
32309116 TAAAATAAAATTCCTAAAAAATATATTTTTGATGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAATAAAATT--TAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT-T
* *
32309175 TGAAAATAAAATTTTTAAACAAAATATTTTTGA-AAGAAAGTTGAATGTATCAATTTCTTTT
1 T-AAAATAAAA--TTTAAA-AAAATATTTTTGAGGA-AAAGTTGAAAGTATCAA-TT-TTTT
* * **
32309236 TAACACAAAATAAAAAAAATATATTTTTTGAGGAAAA-TTGAAAGTATCAATTTTTT
1 TAAAATAAAATTTAAAAAA-ATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTT
* *
32309292 TCGAAAATAAAAAGGTTTAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
1 T--AAAAT-AAAA--TTTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT-T
* *
32309353 TAAAAATAAAATTTAAAAAATATATATTTTTAAGGAAAAGTTGAATGTATCAATTTTTT
1 T-AAAATAAAATTT-AAAAA-A-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTT
* *
32309412 TAACAACAAAATTTTTTTTTAAAAAAAGATGATTTTGAGGAAAAGTTGAAAGTATCAATTTTTTT
1 TAA-AATAAAA------TTTAAAAAAATAT--TTTTGAGGAAAAGTTGAAAGTATCAA--TTTTT
32309477 T
55 T
* * *
32309478 TAAAATTAAAATTTCAAAAAAA-ATATTTTGAGAAAAAGTTGGAAGTACCAATTTTTT
1 TAAAA-TAAAATTT-AAAAAAATAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTT
* * *
32309535 CTAAAAATAAAATTATCAAGAAAAATATTTTTAAGGAAAAGTTAAAAATATCAATTTTTCT
1 -T-AAAATAAAATT-T-AA-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT-T
32309596 TAAAATAAAA
1 TAAAATAAAA
32309606 ACCTTCAAAT
Statistics
Matches: 361, Mismatches: 31, Indels: 78
0.77 0.07 0.17
Matches are distributed among these distances:
56 5 0.01
57 14 0.04
58 37 0.10
59 81 0.22
60 142 0.39
61 26 0.07
62 8 0.02
63 1 0.00
64 29 0.08
65 5 0.01
66 13 0.04
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.37
Consensus pattern (55 bp):
TAAAATAAAATTTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTT
Found at i:32309259 original size:118 final size:116
Alignment explanation
Indices: 32309116--32309605 Score: 465
Period size: 118 Copynumber: 4.1 Consensus size: 116
32309106 ACGATTTTCC
** *
32309116 TAAAATAAAATTCCTAAAAAATATATTTTTGATGAAAAGTTGAAAGTATCAATTTTTCTTGAAAA
1 TAAAATAAAATT-AAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT-TTGAAAA
*
32309181 TAAAATTTTTAAACAAAATATTTTTGAAAGAAAGTTGAATGTATCAATTTCTTTT
64 TAAAATTTTTAAA-AAAATATTTTTGAAAGAAAGTTGAAAGTATCAATTT-TTTT
* *
32309236 TAACACAAAA-TAAAAAAAATATATTTTTTGAGGAAAA-TTGAAAGTATCAATTTTTTTCGAAAA
1 TAAAATAAAATTAAAAAAAATATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTT-GAAAA
** *
32309299 TAAAAAGGTTTAAAAAAATATTTTT-AAGAAAAAGTTGAAAGTATCAATTTTTCTT
64 T-AAAATTTTTAAAAAAATATTTTTGAA-AGAAAGTTGAAAGTATCAATTTTT-TT
* * * *
32309354 AAAAATAAAATTTAAAAAATATATATTTTTAAGGAAAAGTTGAATGTATCAATTTTTTT-AACAA
1 TAAAATAAAA-TTAAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTGAA-AA
* * *
32309418 CAAAATTTTTTTTTAAAAAAAGATGATTTTG-AGGAAAAGTTGAAAGTATCAATTTTTTTT
64 TAAAA----TTTTTAAAAAAATAT--TTTTGAAAG-AAAGTTGAAAGTATCAA-TTTTTTT
* * * * *
32309478 TAAAATTAAAATTTCAAAAAAA-ATA-TTTTGAGAAAAAGTTGGAAGTACCAATTTTTTCTAAAA
1 TAAAA-TAAAA-TTAAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTT-TGAAA
* * * * * *
32309541 ATAAAATTATCAAGAAAAATATTTTT-AAGGAAAAGTTAAAAATATCAATTTTTCT
63 ATAAAATTTTTAA-AAAAATATTTTTGAAAG-AAAGTTGAAAGTATCAATTTTTTT
32309596 TAAAATAAAA
1 TAAAATAAAA
32309606 ACCTTCAAAT
Statistics
Matches: 311, Mismatches: 36, Indels: 49
0.79 0.09 0.12
Matches are distributed among these distances:
117 11 0.04
118 91 0.29
119 60 0.19
120 44 0.14
121 7 0.02
122 12 0.04
123 27 0.09
124 38 0.12
125 21 0.07
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.37
Consensus pattern (116 bp):
TAAAATAAAATTAAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTGAAAATA
AAATTTTTAAAAAAATATTTTTGAAAGAAAGTTGAAAGTATCAATTTTTTT
Found at i:32310664 original size:109 final size:108
Alignment explanation
Indices: 32310461--32311144 Score: 599
Period size: 109 Copynumber: 6.3 Consensus size: 108
32310451 TTAAAATGTG
* * * * * *
32310461 AGTCAAAAAAT-AATGACGACTGGGATTGAACCGCAAGTCAAAAAACTATAAAAATGACCAAGAT
1 AGTCAAAAAATAAAAG-CAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATCAAGAT
* * * **
32310525 TAAATCACGAGTCAAAGATTAACAATGACTGGGACTGAATTGCA
65 TAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
* ** * *
32310569 AGTCAGAACAATAAAAGCAACTGGGATTAAATTGCAAGTCGAGAAACTATAGATATGATCAAGAT
1 AGTCA-AAAAATAAAAGCAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATCAAGAT
* *
32310634 TAAACCACGAGTTAAAGATTAACGACGACTGTGACTGAACCGCA
65 TAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
* * ** * * ***
32310678 AGTTAGAAAAATAAAAGCAACTGGGATTAAATCATAAATCGAGAAACTATAGAAATGATTGGGAT
1 AGTCA-AAAAATAAAAGCAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATCAAGAT
* * * * *
32310743 TAAACCATGAGTCAAAGATTAATGATGACTGAGACTGAACCACA
65 TAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
* ** * * ** *
32310787 ATTCAAAAAATAAAAGTGATTGAGATTAAACCGCAAGTC-AGAAACTATAGCAATGA-CTAGGAT
1 AGTCAAAAAATAAAAGCAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATC-AAGAT
* * * *
32310850 TAAACCACAAGTCAAAGATTAATGACGACTAGGACTGAACGGCA
65 TAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
** * * ** * *
32310894 AGCTCAAAAAATAAAAGTGACTGAGATTAAACTGTGAGTCGAGAAACGATAAAAATGA-CTAGGA
1 AG-TCAAAAAATAAAAGCAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATC-AAGA
* * * * *
32310958 TTAAACCACGAGTCAAAGATTAACAACGACTAGGACTAAACTGTA
64 TTAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
* * * * *
32311003 AGTCCAAAAAATAAAATG--ACTAGGATTAAACCGTAAGT-TAGAAAACTATAAAAATTATCTAG
1 AGT-CAAAAAATAAAA-GCAACTGGGATTAAACCGCAAGTCGAG-AAACTATAAAAATGATCAAG
* * * * *
32311065 ATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAATCGTA
63 ATTAAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
* **
32311111 AGCCTAAAAAATAAAAGTGACTGGGATTAAACCG
1 AGTC-AAAAAATAAAAGCAACTGGGATTAAACCG
32311145 TGAGTCAGAA
Statistics
Matches: 479, Mismatches: 85, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
107 62 0.13
108 148 0.31
109 265 0.55
110 4 0.01
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.20
Consensus pattern (108 bp):
AGTCAAAAAATAAAAGCAACTGGGATTAAACCGCAAGTCGAGAAACTATAAAAATGATCAAGATT
AAACCACGAGTCAAAGATTAACGACGACTGGGACTGAACCGCA
Found at i:32310909 original size:216 final size:213
Alignment explanation
Indices: 32310503--32311142 Score: 646
Period size: 216 Copynumber: 2.9 Consensus size: 213
32310493 GCAAGTCAAA
* * * * * *
32310503 AAACTATAAAAATGACCAAGATTAAATCACGAGTCAAAGATTAACAATGACTGGGACTGAATTGC
1 AAACGATAAAAATGACTAGGATTAAACCACGAGTCAAAGATTAACAATGACTGAGACTGAACTGC
* * ** * ** *
32310568 AAGTCAGAACAATAAAAGCAACTGGGATTAAATTGCAAGTCGAGAAACTATAGATATGATCAAGA
66 AATTCA-AAAAATAAAAGTGACTGAGATTAAACCGCAAGTC-AGAAACTATAGA-ATGA-CTAGA
* * * **
32310633 TTAAACCACGAGTTAAAGATTAACGACGACTGTGACTGAACCGCAAG-TTAGAAAAATAAAAGCA
127 TTAAACCACGAGTCAAAGATTAACGACGACTGAGACTGAA-CGCAAGCTCA-AAAAATAAAAGTG
32310697 ACTGGGATTAAA-TCATAAATCGAG
190 ACTGGGATTAAACT-ATAAATCGAG
* * * * * ** **
32310721 AAACTATAGAAATGATTGGGATTAAACCATGAGTCAAAGATTAATGATGACTGAGACTGAACCAC
1 AAACGATAAAAATGACTAGGATTAAACCACGAGTCAAAGATTAACAATGACTGAGACTGAACTGC
*
32310786 AATTCAAAAAATAAAAGTGATTGAGATTAAACCGCAAGTCAGAAACTATAGCAATGACTAGGATT
66 AATTCAAAAAATAAAAGTGACTGAGATTAAACCGCAAGTCAGAAACTATAG-AATGACTA-GATT
* *
32310851 AAACCACAAGTCAAAGATTAATGACGACT-AGGACTGAACGGCAAGCTCAAAAAATAAAAGTGAC
129 AAACCACGAGTCAAAGATTAACGACGACTGA-GACTGAAC-GCAAGCTCAAAAAATAAAAGTGAC
* * * *
32310915 TGAGATTAAACTGTGAGTCGAG
192 TGGGATTAAACTATAAATCGAG
* *
32310937 AAACGATAAAAATGACTAGGATTAAACCACGAGTCAAAGATTAACAACGACT-AGGACTAAACTG
1 AAACGATAAAAATGACTAGGATTAAACCACGAGTCAAAGATTAACAATGACTGA-GACTGAACTG
* * * * * *
32311001 TAAGTCCAAAAAATAAAA-TGACT-AGGATTAAACCGTAAGTTAGAAAACTATAAAAATTATCTA
65 CAA-TTCAAAAAATAAAAGTGACTGA-GATTAAACCGCAAGTCAG-AAACTAT-AGAATGA-CTA
* * *
32311064 GATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAATCGTAAGC-CTAAAAAATAAAAG
125 GATTAAACCACGAGTCAAAGATTAACGACGACTGAGACTGAA-CGCAAGCTC-AAAAAATAAAAG
32311128 TGACTGGGATTAAAC
188 TGACTGGGATTAAAC
32311143 CGTGAGTCAG
Statistics
Matches: 350, Mismatches: 57, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
215 5 0.01
216 160 0.46
217 122 0.35
218 63 0.18
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (213 bp):
AAACGATAAAAATGACTAGGATTAAACCACGAGTCAAAGATTAACAATGACTGAGACTGAACTGC
AATTCAAAAAATAAAAGTGACTGAGATTAAACCGCAAGTCAGAAACTATAGAATGACTAGATTAA
ACCACGAGTCAAAGATTAACGACGACTGAGACTGAACGCAAGCTCAAAAAATAAAAGTGACTGGG
ATTAAACTATAAATCGAG
Found at i:32310960 original size:38 final size:35
Alignment explanation
Indices: 32310897--32311033 Score: 109
Period size: 35 Copynumber: 3.8 Consensus size: 35
32310887 AACGGCAAGC
* *
32310897 TCAAAAAATAAAAGTGACT-GAGATTAAACTGTGAG
1 TCAAAAGATAAAAATGACTAG-GATTAAACTGTGAG
***
32310932 TCGAGAAACGATAAAAATGACTAGGATTAAACCACGAG
1 TC-A-AAA-GATAAAAATGACTAGGATTAAACTGTGAG
* * * *
32310970 TC-AAAGATTAACAACGACTAGGACTAAACTGTAAG
1 TCAAAAGA-TAAAAATGACTAGGATTAAACTGTGAG
*
32311005 TCCAAAAAAT-AAAATGACTAGGATTAAAC
1 T-CAAAAGATAAAAATGACTAGGATTAAAC
32311034 CGTAAGTTAG
Statistics
Matches: 79, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
34 2 0.03
35 42 0.53
36 3 0.04
37 7 0.09
38 24 0.30
39 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (35 bp):
TCAAAAGATAAAAATGACTAGGATTAAACTGTGAG
Found at i:32311122 original size:325 final size:324
Alignment explanation
Indices: 32310478--32311155 Score: 749
Period size: 325 Copynumber: 2.1 Consensus size: 324
32310468 AAATAATGAC
* * * * *
32310478 GACTGGGATTGAACCGCAAGTCAAAAAACTATAAAAATGACCAAGATTAAATCACGAGTCAAAGA
1 GACTGAGATTAAACCGCAAGTC-AGAAACTATAAAAATGACCAAGATTAAACCACAAGTCAAAGA
* * ** * * *
32310543 TTAACAATGACTGGGACTGAATTGCAAGTCAGAACAATAAAAGCAACTGGGATTAAATTGCAAGT
65 TTAACAACGACTAGGACTGAACGGCAAGTCAGAAAAATAAAAGCAACTGAGATTAAACTGCAAGT
* * * * * *
32310608 CGAGAAACTATAGATATGATCAAGATTAAACCACGAGTTAAAGATTAACGACGACTGTGACTGAA
130 CGAGAAACGATAAAAATGATCAAGATTAAACCACGAGTCAAAGATTAACAACGACTGTGACTAAA
* * * * *
32310673 CCGCAAGTTAGAAAAATAAAAGCAACTGGGATTAAATCATAAATCGAGAAACTATAGAAATGATT
195 CCGCAAGTCAGAAAAATAAAAG-AACTAGGATTAAACCATAAATAGAGAAACTATAAAAATGATT
* * * * **
32310738 GGGATTAAACCATGAGTCAAAGATTAATGATGACTGAGACTGAACCACAATTCAAAAAATAAAAG
259 GAGATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAACCACAAGCCAAAAAATAAAAG
32310803 T
324 T
* ** * *
32310804 GATTGAGATTAAACCGCAAGTCAGAAACTATAGCAATGACTAGGATTAAACCACAAGTCAAAGAT
1 GACTGAGATTAAACCGCAAGTCAGAAACTATAAAAATGACCAAGATTAAACCACAAGTCAAAGAT
** ** **
32310869 TAATGACGACTAGGACTGAACGGCAAGCTCA-AAAAATAAAAGTGACTGAGATTAAACTGTGAGT
66 TAACAACGACTAGGACTGAACGGCAAG-TCAGAAAAATAAAAGCAACTGAGATTAAACTGCAAGT
*
32310933 CGAGAAACGATAAAAATGA-CTAGGATTAAACCACGAGTCAAAGATTAACAACGACTAG-GACTA
130 CGAGAAACGATAAAAATGATC-AAGATTAAACCACGAGTCAAAGATTAACAACGACT-GTGACTA
* * * *
32310996 AACTGTAAGTCCA-AAAAATAAAATG-ACTAGGATTAAACCGTAAGTTAGA-AAACTATAAAAAT
193 AACCGCAAGT-CAGAAAAATAAAA-GAACTAGGATTAAACCATAA-ATAGAGAAACTATAAAAAT
* * **
32311058 TATCT-AGATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAATCGTAAGCCTAAAAAA
255 GAT-TGAGATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAACCACAAGCC-AAAAAA
32311122 TAAAAGT
318 TAAAAGT
* **
32311129 GACTGGGATTAAACCGTGAGTCAGAAA
1 GACTGAGATTAAACCGCAAGTCAGAAA
32311156 AATGAAAATG
Statistics
Matches: 291, Mismatches: 53, Indels: 17
0.81 0.15 0.05
Matches are distributed among these distances:
324 73 0.25
325 193 0.66
326 25 0.09
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (324 bp):
GACTGAGATTAAACCGCAAGTCAGAAACTATAAAAATGACCAAGATTAAACCACAAGTCAAAGAT
TAACAACGACTAGGACTGAACGGCAAGTCAGAAAAATAAAAGCAACTGAGATTAAACTGCAAGTC
GAGAAACGATAAAAATGATCAAGATTAAACCACGAGTCAAAGATTAACAACGACTGTGACTAAAC
CGCAAGTCAGAAAAATAAAAGAACTAGGATTAAACCATAAATAGAGAAACTATAAAAATGATTGA
GATTAAACCACGAGTCAAAGATTAACGATGACTGAGACTAAACCACAAGCCAAAAAATAAAAGT
Found at i:32311212 original size:39 final size:39
Alignment explanation
Indices: 32311160--32311273 Score: 123
Period size: 39 Copynumber: 2.9 Consensus size: 39
32311150 CAGAAAAATG
*
32311160 AAAATGAAT-GGGATAATACCATGAGTCAA-AAAGTAAAAA
1 AAAATG-ATCGGGATAACACCATGAGTCAAGAAA-TAAAAA
32311199 AAAATGATCGGGATAACATCGCA-G-GTCAAGAAATAAAAA
1 AAAATGATCGGGATAACA-C-CATGAGTCAAGAAATAAAAA
*
32311238 AAACA--ATCGGGATAACACCATAAGTCAAGAAATAAA
1 AAA-ATGATCGGGATAACACCATGAGTCAAGAAATAAA
32311274 GAACGATCAG
Statistics
Matches: 66, Mismatches: 2, Indels: 15
0.80 0.02 0.18
Matches are distributed among these distances:
36 2 0.03
37 1 0.02
38 27 0.41
39 28 0.42
40 6 0.09
41 2 0.03
ACGTcount: A:0.54, C:0.12, G:0.18, T:0.16
Consensus pattern (39 bp):
AAAATGATCGGGATAACACCATGAGTCAAGAAATAAAAA
Found at i:32311247 original size:38 final size:38
Alignment explanation
Indices: 32311169--32311273 Score: 106
Period size: 38 Copynumber: 2.7 Consensus size: 38
32311159 GAAAATGAAT
* **
32311169 GGGATAATACCATGAGTCAA-AAAGTAAAAAAAA-ATGATC
1 GGGATAACACCACAAGTCAAGAAA-TAAAAAAAACA--ATC
* * *
32311208 GGGATAACATCGCAGGTCAAGAAATAAAAAAAACAATC
1 GGGATAACACCACAAGTCAAGAAATAAAAAAAACAATC
*
32311246 GGGATAACACCATAAGTCAAGAAATAAA
1 GGGATAACACCACAAGTCAAGAAATAAA
32311274 GAACGATCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
38 27 0.50
39 23 0.43
40 4 0.07
ACGTcount: A:0.53, C:0.13, G:0.18, T:0.15
Consensus pattern (38 bp):
GGGATAACACCACAAGTCAAGAAATAAAAAAAACAATC
Found at i:32311407 original size:37 final size:37
Alignment explanation
Indices: 32311182--32311439 Score: 133
Period size: 37 Copynumber: 6.9 Consensus size: 37
32311172 ATAATACCAT
* * *
32311182 GAGTCAAAAAGTAAAAAAAAATGATCGGGATAACATCGC
1 GAGTCAAGAAGT-AAAGAAAATGATCGGGACAACA-CGC
* * ** *
32311221 -AGGTCAAGAAATAAAAAAAACAATCGGGATAACAC-C
1 GA-GTCAAGAAGTAAAGAAAATGATCGGGACAACACGC
* * * *
32311257 ATAAGTCAAGAAATAAAG--AACGATCAGGACAACACTGC
1 --GAGTCAAGAAGTAAAGAAAATGATCGGGACAACAC-GC
* * *
32311295 GAGTTGAA-AAGTAAA-AAAATGATCGAGACAACACCC
1 GAG-TCAAGAAGTAAAGAAAATGATCGGGACAACACGC
* * * * *
32311331 TAAGTCGAA-AAGT-AAGTAAATGA-CTAGGATAATATCGC
1 -GAGTC-AAGAAGTAAAGAAAATGATC-GGGACAACA-CGC
32311369 GAGTCAAGAAGTAAAGAAAATGATCGGGACAACACGC
1 GAGTCAAGAAGTAAAGAAAATGATCGGGACAACACGC
* *
32311406 GAGCCGAGAAGTAAAG--AATCGATCGGGACAACAC
1 GAGTCAAGAAGTAAAGAAAAT-GATCGGGACAACAC
32311440 CATAATCAAA
Statistics
Matches: 171, Mismatches: 30, Indels: 39
0.71 0.12 0.16
Matches are distributed among these distances:
35 3 0.02
36 44 0.26
37 62 0.36
38 52 0.30
39 10 0.06
ACGTcount: A:0.48, C:0.16, G:0.22, T:0.14
Consensus pattern (37 bp):
GAGTCAAGAAGTAAAGAAAATGATCGGGACAACACGC
Found at i:32312470 original size:33 final size:33
Alignment explanation
Indices: 32312329--32312488 Score: 146
Period size: 33 Copynumber: 4.9 Consensus size: 33
32312319 CTCTTTTGGA
*
32312329 GCCAAATAAACTGGGCTT-AAATTTCATTGAGG
1 GCCAAATAAACTGGGCTTAAAACTTCATTGAGG
** * *
32312361 GCCATCTAAACTAGGCTTAAAACCTCATTTG-GG
1 GCCAAATAAACTGGGCTTAAAACTTCA-TTGAGG
* * * *
32312394 GCAAAATAAACTGGGCTTAAAACTTTATTAATG
1 GCCAAATAAACTGGGCTTAAAACTTCATTGAGG
* **
32312427 GCCAAGTAAACTGGGCTTAAAACTTCATTGATT
1 GCCAAATAAACTGGGCTTAAAACTTCATTGAGG
* ** *
32312460 GCCAGATAAACTAAGCTT-AAATTTCATTG
1 GCCAAATAAACTGGGCTTAAAACTTCATTG
32312489 GTGCCAGATA
Statistics
Matches: 102, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
32 27 0.26
33 72 0.71
34 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (33 bp):
GCCAAATAAACTGGGCTTAAAACTTCATTGAGG
Found at i:32312471 original size:66 final size:66
Alignment explanation
Indices: 32312314--32312455 Score: 173
Period size: 66 Copynumber: 2.2 Consensus size: 66
32312304 TTCGAAACTC
* * * *
32312314 TAAAA-CTCTTTTGGAGCCAAATAAACTGGGCTT-AAATTTCATTGAGGGCCATCTAAACTAGGC
1 TAAAACCTCATTTGGGGCCAAATAAACTGGGCTTAAAATTTCATTAAGGGCCAACTAAACTAGGC
32312377 T
66 T
* * * *
32312378 TAAAACCTCATTTGGGGCAAAATAAACTGGGCTTAAAACTTT-ATTAATGGCCAAGTAAACTGGG
1 TAAAACCTCATTTGGGGCCAAATAAACTGGGCTTAAAA-TTTCATTAAGGGCCAACTAAACTAGG
32312442 CT
65 CT
*
32312444 TAAAACTTCATT
1 TAAAACCTCATT
32312456 GATTGCCAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
64 5 0.08
65 25 0.38
66 33 0.50
67 3 0.05
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (66 bp):
TAAAACCTCATTTGGGGCCAAATAAACTGGGCTTAAAATTTCATTAAGGGCCAACTAAACTAGGC
T
Found at i:32313493 original size:21 final size:21
Alignment explanation
Indices: 32313446--32313512 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 21
32313436 CTCATTCATT
*
32313446 TTTTTTCTTTTTCTTATTTTATTC
1 TTTTTTCTTTTGC--ATTTT-TTC
32313470 TTTATTTCTTTT-CATTTTTTC
1 TTT-TTTCTTTTGCATTTTTTC
* *
32313491 TTTTTTTTTTTGCATTATTTC
1 TTTTTTCTTTTGCATTTTTTC
32313512 T
1 T
32313513 CTGAGTGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.18
21 15 0.38
22 5 0.13
24 4 0.10
25 8 0.21
ACGTcount: A:0.09, C:0.12, G:0.01, T:0.78
Consensus pattern (21 bp):
TTTTTTCTTTTGCATTTTTTC
Found at i:32313954 original size:10 final size:10
Alignment explanation
Indices: 32313947--32313972 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32313937 CATTTTTTTC
32313947 TTTTTTTTAT
1 TTTTTTTTAT
32313957 TTTTTTTTAT
1 TTTTTTTTAT
32313967 TTTTTT
1 TTTTTT
32313973 AACATGCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:32313962 original size:18 final size:18
Alignment explanation
Indices: 32313938--32313973 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
32313928 TGTCATAACC
*
32313938 ATTTTTTTCT-TTTTTTT
1 ATTTTTTTTTATTTTTTT
32313955 ATTTTTTTTTATTTTTTT
1 ATTTTTTTTTATTTTTTT
32313973 A
1 A
32313974 ACATGCCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (18 bp):
ATTTTTTTTTATTTTTTT
Found at i:32314530 original size:6 final size:6
Alignment explanation
Indices: 32314519--32314545 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32314509 GCAAGGTTCA
32314519 CAAATT CAAATT CAAATT CAAATT CAA
1 CAAATT CAAATT CAAATT CAAATT CAA
32314546 GGCTGTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.30
Consensus pattern (6 bp):
CAAATT
Found at i:32316391 original size:24 final size:24
Alignment explanation
Indices: 32316354--32316411 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
32316344 TACATTATAT
* * * *
32316354 TGAATGAATACATAAATGGATGAA
1 TGAATGAGTGCATAAATGAATAAA
32316378 TGAATGAGTGCATAAATGAATAAA
1 TGAATGAGTGCATAAATGAATAAA
32316402 TGAATGAGTG
1 TGAATGAGTG
32316412 AATGCACGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.24, T:0.26
Consensus pattern (24 bp):
TGAATGAGTGCATAAATGAATAAA
Found at i:32316546 original size:15 final size:16
Alignment explanation
Indices: 32316521--32316554 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
32316511 TAATGTCATG
*
32316521 TCAACATAAAAAAATT
1 TCAACATAAAAAAAAT
32316537 TCAA-ATAAAAAAAAT
1 TCAACATAAAAAAAAT
32316552 TCA
1 TCA
32316555 TAAGTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
TCAACATAAAAAAAAT
Found at i:32319885 original size:22 final size:21
Alignment explanation
Indices: 32319837--32319886 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
32319827 GGATTTTAAA
* *
32319837 GTTTTAAATTTTACGGTTTAG
1 GTTTTAAATTTAACGGTTGAG
*
32319858 GATTTTAAATTTAAGGGTTCGAG
1 G-TTTTAAATTTAACGGTT-GAG
32319881 GTTTTA
1 GTTTTA
32319887 GTTTTAGGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 20 0.83
23 3 0.12
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48
Consensus pattern (21 bp):
GTTTTAAATTTAACGGTTGAG
Found at i:32319947 original size:29 final size:30
Alignment explanation
Indices: 32319915--32320011 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 30
32319905 GGTTTGGGGT
*
32319915 TTTA-ATTTCGGGGTTTAAAGGTTTTAGGG
1 TTTAGATTTAGGGGTTTAAAGGTTTTAGGG
* * * * *
32319944 TTTAGTTTTAGGGTTTTGACGG-TTTAAGG
1 TTTAGATTTAGGGGTTTAAAGGTTTTAGGG
* *
32319973 TTTCA-ATTTTA-AGGTTTAATGGTTTTAGGG
1 TTT-AGA-TTTAGGGGTTTAAAGGTTTTAGGG
32320003 TTTAGATTT
1 TTTAGATTT
32320012 TTTTAATTTT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
29 24 0.47
30 27 0.53
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.49
Consensus pattern (30 bp):
TTTAGATTTAGGGGTTTAAAGGTTTTAGGG
Found at i:32319951 original size:13 final size:13
Alignment explanation
Indices: 32319935--32319959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32319925 GGGTTTAAAG
32319935 GTTTTAGGGTTTA
1 GTTTTAGGGTTTA
32319948 GTTTTAGGGTTT
1 GTTTTAGGGTTT
32319960 TGACGGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (13 bp):
GTTTTAGGGTTTA
Found at i:32319968 original size:30 final size:29
Alignment explanation
Indices: 32319926--32320012 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 29
32319916 TTAATTTCGG
* *
32319926 GGTTTAAAGGTTTTAGGGTTTAGTTTTAG
1 GGTTTAACGGTTTTAGGGTTTAGTTTTAA
* * *
32319955 GGTTTTGACGG-TTTAAGGTTTCAATTTTAA
1 GG-TTTAACGGTTTTAGGGTTT-AGTTTTAA
*
32319985 GGTTTAATGGTTTTAGGGTTTAGATTTT
1 GGTTTAACGGTTTTAGGGTTTAG-TTTT
32320013 TTTAATTTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
29 18 0.40
30 27 0.60
ACGTcount: A:0.21, C:0.02, G:0.28, T:0.49
Consensus pattern (29 bp):
GGTTTAACGGTTTTAGGGTTTAGTTTTAA
Found at i:32319981 original size:59 final size:60
Alignment explanation
Indices: 32319883--32320012 Score: 154
Period size: 59 Copynumber: 2.1 Consensus size: 60
32319873 GGTTCGAGGT
* ** * **
32319883 TTTAGTTTTAGGATTTTTTGAAGGTTTGGGGTTTTAATTTCGGGGTTTAAAGGTTTTAGGG
1 TTTAGTTTTAGGA-GTTTTGAAGGTTTAAGGTTTCAATTTCAAGGTTTAAAGGTTTTAGGG
* * *
32319944 TTTAGTTTTAGG-GTTTTGACGGTTTAAGGTTTCAATTTTAAGGTTTAATGGTTTTAGGG
1 TTTAGTTTTAGGAGTTTTGAAGGTTTAAGGTTTCAATTTCAAGGTTTAAAGGTTTTAGGG
32320003 TTTAGATTTT
1 TTTAG-TTTT
32320013 TTTAATTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 43 0.73
60 4 0.07
61 12 0.20
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (60 bp):
TTTAGTTTTAGGAGTTTTGAAGGTTTAAGGTTTCAATTTCAAGGTTTAAAGGTTTTAGGG
Found at i:32320296 original size:19 final size:20
Alignment explanation
Indices: 32320272--32320329 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 20
32320262 TTATTCTATT
32320272 ATTATTATTATTATTTAAG-
1 ATTATTATTATTATTTAAGC
32320291 ATTATTATTATTATTATTAAGC
1 ATTATTATTATTA-T-TTAAGC
*
32320313 ATTTTTATTATATATTT
1 ATTATTATTAT-TATTT
32320330 TTTAGTTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 13 0.38
20 1 0.03
21 7 0.21
22 11 0.32
23 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (20 bp):
ATTATTATTATTATTTAAGC
Found at i:32320296 original size:22 final size:22
Alignment explanation
Indices: 32320269--32320341 Score: 89
Period size: 22 Copynumber: 3.4 Consensus size: 22
32320259 AAATTATTCT
32320269 ATTATTATTATTATTATTTAAG
1 ATTATTATTATTATTATTTAAG
32320291 ATTATTATTATTATTA-TTAAG
1 ATTATTATTATTATTATTTAAG
* *
32320312 CATTTTTATTATATATT-TTTTAG
1 -ATTATTATTAT-TATTATTTAAG
32320335 -TTATTAT
1 ATTATTAT
32320342 CCTACTTTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
21 11 0.24
22 26 0.58
23 8 0.18
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (22 bp):
ATTATTATTATTATTATTTAAG
Found at i:32320323 original size:3 final size:3
Alignment explanation
Indices: 32320268--32320309 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
32320258 AAAATTATTC
* *
32320268 TAT TAT TAT TAT TAT TATT TAA GAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA
32320310 AGCATTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:32324572 original size:20 final size:20
Alignment explanation
Indices: 32324547--32324589 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32324537 TTGTTTAAAT
*
32324547 TTAAATTTGTTATAAATTTA
1 TTAAATTTGTTATAAATTCA
* *
32324567 TTAAATTTTTTATGAATTCA
1 TTAAATTTGTTATAAATTCA
32324587 TTA
1 TTA
32324590 GATCTACTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (20 bp):
TTAAATTTGTTATAAATTCA
Found at i:32329696 original size:3 final size:3
Alignment explanation
Indices: 32329688--32329719 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
32329678 AGATCTCATT
32329688 TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32329720 AACAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32329990 original size:15 final size:15
Alignment explanation
Indices: 32329972--32330005 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
32329962 AATTTTAAAA
*
32329972 TTTAAGGTTTTGGAT
1 TTTAAGGTTTAGGAT
32329987 TTTAAGGTTTAGGAT
1 TTTAAGGTTTAGGAT
32330002 TTTA
1 TTTA
32330006 GATTTTAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (15 bp):
TTTAAGGTTTAGGAT
Found at i:32329997 original size:22 final size:22
Alignment explanation
Indices: 32329963--32330068 Score: 60
Period size: 22 Copynumber: 4.9 Consensus size: 22
32329953 GGTTTTCATA
**
32329963 ATTTTAAAATTTAAGGTTTTGG
1 ATTTTAAGGTTTAAGGTTTTGG
*
32329985 ATTTTAAGGTTT-AGGATTTTAG
1 ATTTTAAGGTTTAAGG-TTTTGG
* *
32330007 ATTTTAGGGTTTCA-GTTTTAGG
1 ATTTTAAGGTTTAAGGTTTT-GG
* **
32330029 -GTTTGGGGTTTGAA-GTTTTGG
1 ATTTTAAGGTTT-AAGGTTTTGG
*
32330050 -TTTTAAGGATTTAGGGTTT
1 ATTTTAAGG-TTTAAGGTTT
32330069 AATTTAGGAT
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
21 24 0.36
22 41 0.62
23 1 0.02
ACGTcount: A:0.22, C:0.01, G:0.27, T:0.50
Consensus pattern (22 bp):
ATTTTAAGGTTTAAGGTTTTGG
Found at i:32330027 original size:14 final size:15
Alignment explanation
Indices: 32329994--32330032 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
32329984 GATTTTAAGG
* *
32329994 TTTAGGATTTTAGAT
1 TTTAGGGTTTCAGAT
32330009 TTTAGGGTTTCAG-T
1 TTTAGGGTTTCAGAT
32330023 TTTAGGGTTT
1 TTTAGGGTTT
32330033 GGGGTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.18, C:0.03, G:0.26, T:0.54
Consensus pattern (15 bp):
TTTAGGGTTTCAGAT
Found at i:32330236 original size:3 final size:3
Alignment explanation
Indices: 32330228--32330264 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
32330218 ACATTAATTT
32330228 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32330265 CTTTTTATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32330472 original size:14 final size:16
Alignment explanation
Indices: 32330441--32330472 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32330431 TTTTAAGTAT
32330441 TTTTAATATATATATC
1 TTTTAATATATATATC
32330457 TTTTAAT-TAT-TATC
1 TTTTAATATATATATC
32330471 TT
1 TT
32330473 ACTTGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAATATATATATC
Found at i:32331245 original size:12 final size:13
Alignment explanation
Indices: 32331211--32331247 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32331201 GAAAACTGTA
32331211 TTTTTGTTT-TTG
1 TTTTTGTTTGTTG
32331223 TCTTTTGTTTGTTG
1 T-TTTTGTTTGTTG
32331237 TTTTT-TTTGTT
1 TTTTTGTTTGTT
32331248 ATTATTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.30
13 12 0.52
14 4 0.17
ACGTcount: A:0.00, C:0.03, G:0.16, T:0.81
Consensus pattern (13 bp):
TTTTTGTTTGTTG
Found at i:32338828 original size:3 final size:3
Alignment explanation
Indices: 32338820--32338850 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
32338810 AGTCTTAAAA
32338820 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
32338851 AAGGAGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:32339694 original size:14 final size:14
Alignment explanation
Indices: 32339653--32339696 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
32339643 ATTATGATTG
32339653 AATAAATTTTATTA
1 AATAAATTTTATTA
*
32339667 AA-AATTTTATATTA
1 AATAAATTT-TATTA
*
32339681 AATAAATTTCATTA
1 AATAAATTTTATTA
32339695 AA
1 AA
32339697 ATTGATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 5 0.20
14 15 0.60
15 5 0.20
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
AATAAATTTTATTA
Found at i:32341455 original size:13 final size:14
Alignment explanation
Indices: 32341437--32341466 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32341427 AATTTCAATC
32341437 TTTTGA-TTTTAAT
1 TTTTGATTTTTAAT
32341450 TTTTGATTTTTAAT
1 TTTTGATTTTTAAT
32341464 TTT
1 TTT
32341467 ATTTAATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (14 bp):
TTTTGATTTTTAAT
Found at i:32351755 original size:28 final size:28
Alignment explanation
Indices: 32351722--32351777 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
32351712 TTTTTACATA
*
32351722 TTATTTCAATTAATTAGTGTATGATTTC
1 TTATTTCAATTAATTAATGTATGATTTC
*
32351750 TTATTTCAATTGATTAATGTATGATTTC
1 TTATTTCAATTAATTAATGTATGATTTC
32351778 ATGCTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (28 bp):
TTATTTCAATTAATTAATGTATGATTTC
Found at i:32353130 original size:8 final size:8
Alignment explanation
Indices: 32353117--32353148 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
32353107 GGTACTTCTG
32353117 ACTCTCAC
1 ACTCTCAC
32353125 ACTCTCAC
1 ACTCTCAC
32353133 ACTCTCAC
1 ACTCTCAC
32353141 ACTCTCAC
1 ACTCTCAC
32353149 CCATGCTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25
Consensus pattern (8 bp):
ACTCTCAC
Found at i:32364897 original size:15 final size:16
Alignment explanation
Indices: 32364872--32364901 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32364862 TATCACGGAG
32364872 AATTCTATTTTTTTTA
1 AATTCTATTTTTTTTA
32364888 AATT-TATTTTTTTT
1 AATTCTATTTTTTTT
32364902 TCTTAGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
AATTCTATTTTTTTTA
Found at i:32388719 original size:5 final size:5
Alignment explanation
Indices: 32388711--32388737 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32388701 ATAAGATAGA
32388711 TAATT TAATT TAATT TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TA
32388738 TAATTTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:32388745 original size:84 final size:80
Alignment explanation
Indices: 32388589--32388753 Score: 240
Period size: 84 Copynumber: 2.0 Consensus size: 80
32388579 TATTTTATTT
*
32388589 TATTTTTAATTTTTACACACATCAAATATAACACAAAATGATATAATTTAATTTAATTTAATTTA
1 TATTTTTAATTTTTACACACACCAAATATAACACAAAATGATATAATTTAATTTAATTTAATTTA
32388654 TAATTTTATATTATC
66 TAATTTTATATTATC
** * *
32388669 TATTTTTAATTTTTGTACACACCAAATATAACATAAGATAGATAATTTAATTTAATTTAATTTAA
1 TATTTTTAATTTTTACACACACCAAATATAACACAAAAT-GAT-A--TAATTTAATTTAATTTAA
*
32388734 TTTATAATTTTATGTTATC
62 TTTATAATTTTATATTATC
32388753 T
1 T
32388754 TATCTTATCG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 34 0.45
81 3 0.04
82 1 0.01
84 37 0.49
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (80 bp):
TATTTTTAATTTTTACACACACCAAATATAACACAAAATGATATAATTTAATTTAATTTAATTTA
TAATTTTATATTATC
Found at i:32408923 original size:2 final size:2
Alignment explanation
Indices: 32408916--32408952 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
32408906 TTGATTGGGC
32408916 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32408953 CGACTGTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32412390 original size:84 final size:84
Alignment explanation
Indices: 32412287--32412513 Score: 370
Period size: 84 Copynumber: 2.7 Consensus size: 84
32412277 AAGATGAAGT
* *
32412287 ACAAGTGGAAACAACCCTAGCTGAGGATAAAACTTCTTCTACTGCATCAGTTCAAGATGAAGAAA
1 ACAAGTAGAAACACCCCTAGCTGAGGATAAAACTTCTTCTACTGCATCAGTTCAAGATGAAGAAA
32412352 CTGGCGCTATTCCTAATGA
66 CTGGCGCTATTCCTAATGA
*
32412371 ACAAGTAGAAACACCCCTAGCTGAGGATAAAACTCCTTCTACTGCATCAGTTCAAGATGAAGAAA
1 ACAAGTAGAAACACCCCTAGCTGAGGATAAAACTTCTTCTACTGCATCAGTTCAAGATGAAGAAA
* *
32412436 TTGGTGCTATTCCTAATGA
66 CTGGCGCTATTCCTAATGA
* *
32412455 ACAAGTAGAAACACCCCTAGCTGAGGATATAAC-TC--CTCCTGCATCAGTTCAAGATGAAG
1 ACAAGTAGAAACACCCCTAGCTGAGGATAAAACTTCTTCTACTGCATCAGTTCAAGATGAAG
32412514 TTGGAGGCTT
Statistics
Matches: 135, Mismatches: 8, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
81 23 0.17
83 1 0.01
84 111 0.82
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (84 bp):
ACAAGTAGAAACACCCCTAGCTGAGGATAAAACTTCTTCTACTGCATCAGTTCAAGATGAAGAAA
CTGGCGCTATTCCTAATGA
Found at i:32419435 original size:2 final size:2
Alignment explanation
Indices: 32419430--32419470 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
32419420 GTGTGTGTGT
32419430 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
32419471 CAAACCATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:32423458 original size:28 final size:29
Alignment explanation
Indices: 32423390--32423458 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 29
32423380 AAATTAGAAT
* *
32423390 AAAATAAATTATTTATTTCAAGCAAATTTAA
1 AAAAT-AA-TATTTAATTCAAGCAAAATTAA
*
32423421 AAAGTAATATTTAATT-AAG-AAAATTAA
1 AAAATAATATTTAATTCAAGCAAAATTAA
32423448 AAAATATATAT
1 AAAATA-ATAT
32423459 ATATTCTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 12 0.36
28 7 0.21
29 8 0.24
30 2 0.06
31 4 0.12
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (29 bp):
AAAATAATATTTAATTCAAGCAAAATTAA
Found at i:32435857 original size:32 final size:32
Alignment explanation
Indices: 32435821--32435897 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
32435811 AACTTCAAAT
* * *
32435821 AATATCATATTAGTTAATTAAA-TAATTATTTA
1 AATATCATATTAATTAA-TAAATTAATAATTCA
* *
32435853 AATATTATATTAATTAATAAATTTATAATTCA
1 AATATCATATTAATTAATAAATTAATAATTCA
32435885 AATATCATATTAA
1 AATATCATATTAA
32435898 AAATTTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 4 0.11
32 34 0.89
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (32 bp):
AATATCATATTAATTAATAAATTAATAATTCA
Found at i:32435896 original size:28 final size:28
Alignment explanation
Indices: 32435864--32435934 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
32435854 ATATTATATT
32435864 AATTAATAAA-TTTAT-AATTCAAATATCA
1 AATTAA-AAATTTTATAAATTCAAA-ATCA
* *
32435892 TATTAAAAATTTTATAAATTTAAAATCA
1 AATTAAAAATTTTATAAATTCAAAATCA
*
32435920 AATTAAATATTTTAT
1 AATTAAAAATTTTAT
32435935 TATAATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.08
28 27 0.73
29 7 0.19
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (28 bp):
AATTAAAAATTTTATAAATTCAAAATCA
Found at i:32436373 original size:28 final size:27
Alignment explanation
Indices: 32436342--32436412 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 27
32436332 TTAAAATTAT
32436342 TAAATTAAAAATATTATTTTAATTCAAA
1 TAAATTAAAAATATTATTTTAATTC-AA
* * *
32436370 TAAATCATAAAT-TTAATTTTTATTCAA
1 TAAATTAAAAATATT-ATTTTAATTCAA
32436397 -AAATATAAAAA-ATTAT
1 TAAAT-TAAAAATATTAT
32436413 ATAAAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
26 6 0.17
27 10 0.29
28 19 0.54
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (27 bp):
TAAATTAAAAATATTATTTTAATTCAA
Found at i:32440414 original size:43 final size:43
Alignment explanation
Indices: 32440366--32440451 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
32440356 TTCAATAAAA
* ** *
32440366 GACTTCAAATAGATAAAACTTGTGCATCAATTATTGTGTAATC
1 GACTTCAAATAAATAAAACTCATGCATCAATTATTGTGCAATC
*
32440409 GACTTCAAATAAATAAAACTCATGCATTAATTATTGTGCAATC
1 GACTTCAAATAAATAAAACTCATGCATCAATTATTGTGCAATC
32440452 TGTTAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (43 bp):
GACTTCAAATAAATAAAACTCATGCATCAATTATTGTGCAATC
Found at i:32440578 original size:16 final size:17
Alignment explanation
Indices: 32440547--32440581 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32440537 AATTATGATA
32440547 TATAAATTCATAGTTTT
1 TATAAATTCATAGTTTT
*
32440564 TATAAA-TCATTGTTTT
1 TATAAATTCATAGTTTT
32440580 TA
1 TA
32440582 ATTTTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (17 bp):
TATAAATTCATAGTTTT
Found at i:32444609 original size:2 final size:2
Alignment explanation
Indices: 32444602--32444626 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32444592 TTTACTACTA
32444602 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
32444627 GTTATAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32444632 original size:6 final size:6
Alignment explanation
Indices: 32444623--32444650 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
32444613 TATATATATA
32444623 TATAGT TATAGT TATAGT TATAGT TATA
1 TATAGT TATAGT TATAGT TATAGT TATA
32444651 TCCCTCTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (6 bp):
TATAGT
Found at i:32451079 original size:2 final size:2
Alignment explanation
Indices: 32451074--32451099 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32451064 ACACACACAG
32451074 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32451100 CATACACAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32454716 original size:33 final size:33
Alignment explanation
Indices: 32454671--32454735 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
32454661 CCTTAAATCT
* *
32454671 AAATGGAATTAATTTAATTTATATTGAAGAATA
1 AAATGGAATTAATTTAATATATATTCAAGAATA
*
32454704 AAATGGATTTAATTTAATATATATTCAAGAAT
1 AAATGGAATTAATTTAATATATATTCAAGAAT
32454736 TTTGCTCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.40
Consensus pattern (33 bp):
AAATGGAATTAATTTAATATATATTCAAGAATA
Found at i:32463345 original size:3 final size:3
Alignment explanation
Indices: 32463337--32463378 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
32463327 ATCCAGGCAA
32463337 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32463379 TCTTTGCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32492459 original size:33 final size:32
Alignment explanation
Indices: 32492409--32492471 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
32492399 TAGATTCAAA
32492409 ATTTAAATAATTATAAATAATTTATTTAAATTC
1 ATTTAAATAATTATAAAT-ATTTATTTAAATTC
* *
32492442 ATTT-AATGAATTTTAAATTTTTATTTAAAT
1 ATTTAAAT-AATTATAAATATTTATTTAAAT
32492472 CTTTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (32 bp):
ATTTAAATAATTATAAATATTTATTTAAATTC
Found at i:32493115 original size:17 final size:19
Alignment explanation
Indices: 32493070--32493109 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32493060 AAAGATTGAA
*
32493070 AAAATTTTAAAAAATATAT
1 AAAATATTAAAAAATATAT
*
32493089 AAAATATTAAAAAATTTAT
1 AAAATATTAAAAAATATAT
32493108 AA
1 AA
32493110 TATTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATATTAAAAAATATAT
Found at i:32493553 original size:2 final size:2
Alignment explanation
Indices: 32493546--32493572 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32493536 TTGAGTTTAC
32493546 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32493573 GGGTTGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32494215 original size:2 final size:2
Alignment explanation
Indices: 32494208--32494256 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
32494198 ACAAAGGGGA
32494208 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32494250 AG AG AG A
1 AG AG AG A
32494257 AATGGGGTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32502143 original size:27 final size:27
Alignment explanation
Indices: 32502092--32502143 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
32502082 TTTCCTTCTG
*
32502092 TACTAATTGCGGAAATAAGATGAACTC
1 TACTAATTGCGGAAATAAGAGGAACTC
* *
32502119 TACTAATTGCTGAAATAGGAGGAAC
1 TACTAATTGCGGAAATAAGAGGAAC
32502144 ATGCCTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (27 bp):
TACTAATTGCGGAAATAAGAGGAACTC
Found at i:32505712 original size:22 final size:22
Alignment explanation
Indices: 32505687--32505728 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32505677 TTGTCTATCC
* *
32505687 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
32505709 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
32505729 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:32509670 original size:22 final size:22
Alignment explanation
Indices: 32509645--32509687 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32509635 TTGTCCATCC
* *
32509645 TAATTTTAGGGATACAAATATT
1 TAATTCTAGAGATACAAATATT
32509667 TAATTCTAGAGATACAAATAT
1 TAATTCTAGAGATACAAATAT
32509688 AAATATATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATATT
Found at i:32509698 original size:22 final size:22
Alignment explanation
Indices: 32509646--32509698 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
32509636 TGTCCATCCT
* * *
32509646 AATTTTAGGGATACAAATATTT
1 AATTATAGAGATACAAATATTA
*
32509668 AATTCTAGAGATACAAATA-TA
1 AATTATAGAGATACAAATATTA
32509689 AATATATAGA
1 AAT-TATAGA
32509699 TTACAAGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (22 bp):
AATTATAGAGATACAAATATTA
Found at i:32518477 original size:3 final size:3
Alignment explanation
Indices: 32518469--32518504 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32518459 CATATTGTCT
32518469 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32518505 AAAATTCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:32519055 original size:8 final size:8
Alignment explanation
Indices: 32519038--32519078 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
32519028 GGTCTGAATC
*
32519038 ACGAGCCA
1 ACGAGTCA
32519046 ACGAGTCA
1 ACGAGTCA
32519054 ACGAGTCA
1 ACGAGTCA
*
32519062 ACCAGTCA
1 ACGAGTCA
*
32519070 ACCAGTCA
1 ACGAGTCA
32519078 A
1 A
32519079 GGAGACAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.39, C:0.32, G:0.20, T:0.10
Consensus pattern (8 bp):
ACGAGTCA
Found at i:32520885 original size:152 final size:153
Alignment explanation
Indices: 32520589--32520895 Score: 458
Period size: 152 Copynumber: 2.0 Consensus size: 153
32520579 AAGTGTGAAC
* * * *
32520589 TCTAAAAGTCTTAATAGTGAACGACATAAATACTCTTATAAATTTTAAGAAATAACAAATTTACT
1 TCTAAAAGTCTTAAAAATGAACAACATAAATACTCTTATAAATTTTAAAAAATAACAAATTTACT
* * *
32520654 TTTAAATTTCTAACATTTTTTAATTATTTAATAATGATTATTTGTCATTAAATATATAGCTTTTA
66 ATTAAATTTCTAACATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTTA
32520719 TTAGTTAGTTATTTAAATTTAAA
131 TTAGTTAGTTATTTAAATTTAAA
* *
32520742 TCTAAAAGTGTTAAAAATGAATAACATAAATA-TCTTTATAAATTTTAAAAAATAACAAATTTA-
1 TCTAAAAGTCTTAAAAATGAACAACATAAATACTC-TTATAAATTTTAAAAAATAACAAATTTAC
* * *
32520805 TAATTCAATTTCTAGCA-TTTTTATTTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTT
65 T-ATTAAATTTCTAACATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTT
*
32520869 TATTTGTTAGTTATTTAAATTTAAA
129 TATTAGTTAGTTATTTAAATTTAAA
32520894 TC
1 TC
32520896 AATTAAAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
152 73 0.53
153 66 0.47
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (153 bp):
TCTAAAAGTCTTAAAAATGAACAACATAAATACTCTTATAAATTTTAAAAAATAACAAATTTACT
ATTAAATTTCTAACATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTTA
TTAGTTAGTTATTTAAATTTAAA
Found at i:32521376 original size:23 final size:24
Alignment explanation
Indices: 32521344--32521390 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
32521334 AGATTAATTG
*
32521344 AAATTAAAATTCAT-ACAAAATTAT
1 AAATTAAAATT-ATAAAAAAATTAT
32521368 AAATT-AAATTATAAAAAAATTAT
1 AAATTAAAATTATAAAAAAATTAT
32521391 TCAAAAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 14 0.67
24 5 0.24
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (24 bp):
AAATTAAAATTATAAAAAAATTAT
Found at i:32523270 original size:20 final size:21
Alignment explanation
Indices: 32523245--32523284 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32523235 AAACTCTTAC
32523245 TTTTTTATATTTTAA-ATTAT
1 TTTTTTATATTTTAACATTAT
*
32523265 TTTTTTATTTTTTAACATTA
1 TTTTTTATATTTTAACATTA
32523285 AAAATCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTTATATTTTAACATTAT
Found at i:32524158 original size:22 final size:21
Alignment explanation
Indices: 32524098--32524216 Score: 98
Period size: 22 Copynumber: 5.5 Consensus size: 21
32524088 AATACAGTAG
* *
32524098 TAAATTAAGGATAATTTAATAA
1 TAAA-TAATGATAACTTAATAA
32524120 -AAATAAGTGATAACTTAATAA
1 TAAATAA-TGATAACTTAATAA
* *
32524141 TAAAGTAATGATAGCTTAATAG
1 TAAA-TAATGATAACTTAATAA
* *
32524163 TAAAATGATGATAACTTAATAG
1 T-AAATAATGATAACTTAATAA
* * *
32524185 TAAATTAATAATAATTTAATAG
1 TAAA-TAATGATAACTTAATAA
32524207 TAAAT-ATGAT
1 TAAATAATGAT
32524217 TCAGTTTAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
20 7 0.09
21 19 0.23
22 50 0.61
23 6 0.07
ACGTcount: A:0.52, C:0.03, G:0.11, T:0.34
Consensus pattern (21 bp):
TAAATAATGATAACTTAATAA
Found at i:32524180 original size:44 final size:45
Alignment explanation
Indices: 32524127--32524216 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 45
32524117 TAAAAATAAG
* *
32524127 TGATAACTTAATAATAAAGTAATGATAGCTTAATAGTAAA-ATGA
1 TGATAACTTAATAATAAAGTAATAATAACTTAATAGTAAATATGA
* * *
32524171 TGATAACTTAATAGTAAATTAATAATAATTTAATAGTAAATATGA
1 TGATAACTTAATAATAAAGTAATAATAACTTAATAGTAAATATGA
32524216 T
1 T
32524217 TCAGTTTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 35 0.88
45 5 0.12
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (45 bp):
TGATAACTTAATAATAAAGTAATAATAACTTAATAGTAAATATGA
Found at i:32524194 original size:11 final size:11
Alignment explanation
Indices: 32524156--32524211 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
32524146 TAATGATAGC
32524156 TTAATAGTAAA
1 TTAATAGTAAA
* * *
32524167 ATGAT-GATAAC
1 TTAATAG-TAAA
32524178 TTAATAGTAAA
1 TTAATAGTAAA
* *
32524189 TTAATAATAAT
1 TTAATAGTAAA
32524200 TTAATAGTAAA
1 TTAATAGTAAA
32524211 T
1 T
32524212 ATGATTCAGT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
10 1 0.03
11 31 0.94
12 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (11 bp):
TTAATAGTAAA
Found at i:32524558 original size:22 final size:22
Alignment explanation
Indices: 32524524--32524584 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
32524514 AATCATAAAG
* *
32524524 AACTTAATA-TAAATTAATGAT
1 AACTTAGTAGTAAATTAATGAA
* *
32524545 AATTTAGTAGTAAA-TAATTTAA
1 AACTTAGTAGTAAATTAA-TGAA
32524567 AACTTAGTAGT-AATTAAT
1 AACTTAGTAGTAAATTAAT
32524585 AATTAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.39
Consensus pattern (22 bp):
AACTTAGTAGTAAATTAATGAA
Found at i:32524582 original size:43 final size:44
Alignment explanation
Indices: 32524484--32524584 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 44
32524474 AGATAAAGAG
* *
32524484 AATAGTAATTAATTGATAAATTTAATGGTAAATCATAAAGAACTT
1 AATAGTAATTAA-TGATAAATTTAATAGTAAATAATAAAGAACTT
* *
32524529 AATA-TAAATTAATGAT-AATTTAGTAGTAAATAATTTAA-AACTT
1 AATAGT-AATTAATGATAAATTTAATAGTAAATAA-TAAAGAACTT
*
32524572 AGTAGTAATTAAT
1 AATAGTAATTAAT
32524585 AATTAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
43 29 0.60
44 9 0.19
45 10 0.21
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (44 bp):
AATAGTAATTAATGATAAATTTAATAGTAAATAATAAAGAACTT
Found at i:32524702 original size:22 final size:22
Alignment explanation
Indices: 32524677--32525033 Score: 156
Period size: 22 Copynumber: 16.2 Consensus size: 22
32524667 TAAATTAGTG
* *
32524677 ATAACTTAATAATATATCAATA
1 ATAACTTAATAGTAAATCAATA
*
32524699 ATAATTTAATAGTAAATCAATA
1 ATAACTTAATAGTAAATCAATA
32524721 ATAA-TATAATAGTAAATGC-ATA
1 ATAACT-TAATAGTAAAT-CAATA
*
32524743 ATAACTTAATAGTAAATCAATT
1 ATAACTTAATAGTAAATCAATA
* * *
32524765 ATAACATATTTGTAAATGC-ATA
1 ATAACTTAATAGTAAAT-CAATA
* * * * *
32524787 ACAGCATAGTAGTAAATCAATG
1 ATAACTTAATAGTAAATCAATA
* ** * *
32524809 ATAATTTAATAAAAAATAAATG
1 ATAACTTAATAGTAAATCAATA
* * * *
32524831 ATAATTTAATAGTTAATCATTG
1 ATAACTTAATAGTAAATCAATA
*
32524853 ATAATTTAATAGTAAATCAATGA
1 ATAACTTAATAGTAAATCAAT-A
* ** * *
32524876 A-AATTTAGCAATAAAT-TATA
1 ATAACTTAATAGTAAATCAATA
** *
32524896 GATAACTTAATAGTAAATCTGTT
1 -ATAACTTAATAGTAAATCAATA
* ** * *
32524919 TTAGTTTAATA-TAAATTAAATT
1 ATAACTTAATAGTAAA-TCAATA
** *
32524941 ATAAACTTAGCAATAAATC-ATAA
1 AT-AACTTAATAGTAAATCAAT-A
* * *
32524964 ATAATTTAGA-AATAAATCAATG
1 ATAACTTA-ATAGTAAATCAATA
* * *
32524986 ATAATTTAATAGTTAATCACTA
1 ATAACTTAATAGTAAATCAATA
* *
32525008 A-AACTCAATAGTAAATCAATG
1 ATAACTTAATAGTAAATCAATA
32525029 ATAAC
1 ATAAC
32525034 ATGGTAGCAA
Statistics
Matches: 253, Mismatches: 64, Indels: 36
0.72 0.18 0.10
Matches are distributed among these distances:
20 1 0.00
21 27 0.11
22 205 0.81
23 16 0.06
24 4 0.02
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCAATA
Found at i:32524747 original size:66 final size:66
Alignment explanation
Indices: 32524677--32525032 Score: 197
Period size: 66 Copynumber: 5.4 Consensus size: 66
32524667 TAAATTAGTG
*
32524677 ATAACTTAATAATATATCAATAATAATTTAATAGTAAATCAATAATAATATAATAGTAAATGC-A
1 ATAACTTAATAATAAATCAATAATAATTTAATAGTAAATCAATAATAATATAATAGTAAAT-CAA
32524741 TA
65 TA
* * ** * * * ** *
32524743 ATAACTTAATAGTAAATCAATTATAACATATTTGTAAATGC-ATAACAGCATAGTAGTAAATCAA
1 ATAACTTAATAATAAATCAATAATAATTTAATAGTAAAT-CAATAATAATATAATAGTAAATCAA
*
32524807 TG
65 TA
* * * * * * * *
32524809 ATAATTTAATAAAAAATAAATGATAATTTAATAGTTAATCATTGATAATTTAATAGTAAATCAAT
1 ATAACTTAATAATAAATCAATAATAATTTAATAGTAAATCAATAATAATATAATAGTAAATCAAT
32524874 GA
66 -A
* ** * * ** ** * * *
32524876 A-AATTTAGCAATAAAT-TATAGATAACTTAATAGTAAATCTGTTTTAGTTTAATA-TAAATTAA
1 ATAACTTAATAATAAATCAATA-ATAATTTAATAGTAAATCAATAATAATATAATAGTAAA-TCA
*
32524938 ATT
64 ATA
** * * * *
32524941 ATAAACTTAGCAATAAATC-ATAAATAATTTAGA-AATAAATCAATGATAATTTAATAGTTAATC
1 AT-AACTTAATAATAAATCAAT-AATAATTTA-ATAGTAAATCAATAATAATATAATAGTAAATC
*
32525004 ACTA
63 AATA
* * *
32525008 A-AACTCAATAGTAAATCAATGATAA
1 ATAACTTAATAATAAATCAATAATAA
32525033 CATGGTAGCA
Statistics
Matches: 216, Mismatches: 61, Indels: 27
0.71 0.20 0.09
Matches are distributed among these distances:
65 25 0.12
66 140 0.65
67 46 0.21
68 5 0.02
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (66 bp):
ATAACTTAATAATAAATCAATAATAATTTAATAGTAAATCAATAATAATATAATAGTAAATCAAT
A
Found at i:32524875 original size:44 final size:44
Alignment explanation
Indices: 32524601--32525033 Score: 188
Period size: 44 Copynumber: 9.8 Consensus size: 44
32524591 AAATTAAAAA
* * *
32524601 TAAATCAAT-ATAATTTAATAGT-AATCATCGATAAATTAATAA
1 TAAATCAATAATAATTTAATAGTAAATCATTGATAACTTAATAG
* * * * * * * * *
32524643 TTAATTAATGATGATTCTGTATAATAAATTAGTGATAACTTAATAA
1 TAAATCAATAATAATT-T-AATAGTAAATCATTGATAACTTAATAG
* * *
32524689 TATATCAATAATAATTTAATAGTAAATCAATAATAA-TATAATAG
1 TAAATCAATAATAATTTAATAGTAAATCATTGATAACT-TAATAG
* * * *
32524733 TAAATGC-ATAATAACTTAATAGTAAATCAATT-ATAACATATTTG
1 TAAAT-CAATAATAATTTAATAGTAAATC-ATTGATAACTTAATAG
* *** * * * *
32524777 TAAATGC-ATAACAGCATAGTAGTAAATCAATGATAATTTAATAA
1 TAAAT-CAATAATAATTTAATAGTAAATCATTGATAACTTAATAG
* * * * *
32524821 AAAATAAATGATAATTTAATAGTTAATCATTGATAATTTAATAG
1 TAAATCAATAATAATTTAATAGTAAATCATTGATAACTTAATAG
** * * *
32524865 TAAATCAATGAA-AATTTAGCAATAAATTATAGATAACTTAATAG
1 TAAATCAAT-AATAATTTAATAGTAAATCATTGATAACTTAATAG
** ** * * ** *
32524909 TAAATCTGTTTTAGTTTAATA-TAAATTAAATT-ATAAACTTAGCAA
1 TAAATCAATAATAATTTAATAGTAAA-T-CATTGAT-AACTTAATAG
* * *
32524954 TAAATC-ATAAATAATTTAGA-AATAAATCAATGATAATTTAATAG
1 TAAATCAAT-AATAATTTA-ATAGTAAATCATTGATAACTTAATAG
* * * * *
32524998 TTAATCACTAA-AACTCAATAGTAAATCAATGATAAC
1 TAAATCAATAATAATTTAATAGTAAATCATTGATAAC
32525034 ATGGTAGCAA
Statistics
Matches: 285, Mismatches: 85, Indels: 41
0.69 0.21 0.10
Matches are distributed among these distances:
42 8 0.03
43 31 0.11
44 179 0.63
45 35 0.12
46 32 0.11
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.36
Consensus pattern (44 bp):
TAAATCAATAATAATTTAATAGTAAATCATTGATAACTTAATAG
Found at i:32524994 original size:67 final size:66
Alignment explanation
Indices: 32524831--32524998 Score: 151
Period size: 67 Copynumber: 2.5 Consensus size: 66
32524821 AAAATAAATG
* * * * * * *
32524831 ATAATTTAATAGTTAATCATTGATAATTTAATAGTAAATCAATGAAAATTTAGCAATAAATTATA
1 ATAACTTAATAATAAATCAATGATAATTTAATAGTAAATAAATGAAAACTTAGCAATAAATCATA
*
32524896 G
66 A
* ** ** * *
32524897 ATAACTTAATAGTAAATCTGTTTTAGTTTAATA-TAAATTAAATTATAAACTTAGCAATAAATCA
1 ATAACTTAATAATAAATCAATGATAATTTAATAGTAAA-TAAATGA-AAACTTAGCAATAAATCA
32524961 TAA
64 TAA
*
32524964 ATAATTTAGA-AATAAATCAATGATAATTTAATAGT
1 ATAACTTA-ATAATAAATCAATGATAATTTAATAGT
32524999 TAATCACTAA
Statistics
Matches: 79, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
65 4 0.05
66 31 0.39
67 42 0.53
68 2 0.03
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (66 bp):
ATAACTTAATAATAAATCAATGATAATTTAATAGTAAATAAATGAAAACTTAGCAATAAATCATA
A
Found at i:32525084 original size:22 final size:22
Alignment explanation
Indices: 32525059--32525175 Score: 82
Period size: 22 Copynumber: 5.4 Consensus size: 22
32525049 TAATAGTATT
* *
32525059 TAGTAAATCATTGCTATTTTTA-
1 TAGTAAATCATTGATA-ATTTAG
32525081 TAGTAAA-CTATTGATAATTTAG
1 TAGTAAATC-ATTGATAATTTAG
* *
32525103 TAGTAAATCACTAATAATATTA-
1 TAGTAAATCATTGATAAT-TTAG
* * *
32525125 TAGTAAATTATTGATAACTTCG
1 TAGTAAATCATTGATAATTTAG
* *
32525147 CT-GTAAATAAGTGATAATTTAG
1 -TAGTAAATCATTGATAATTTAG
32525169 TA-TAAAT
1 TAGTAAAT
32525176 TAATAATGAT
Statistics
Matches: 75, Mismatches: 13, Indels: 15
0.73 0.13 0.15
Matches are distributed among these distances:
21 13 0.17
22 57 0.76
23 5 0.07
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (22 bp):
TAGTAAATCATTGATAATTTAG
Found at i:32525164 original size:44 final size:43
Alignment explanation
Indices: 32525077--32525177 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 43
32525067 CATTGCTATT
* * *
32525077 TTTATAGTAAACTATTGATAATTTAGTAGTAAATCACTAATAA
1 TTTATAGTAAATTATTGATAACTTAGTAGTAAATAACTAATAA
* * *
32525120 TATTATAGTAAATTATTGATAACTTCGCT-GTAAATAAGTGATAA
1 T-TTATAGTAAATTATTGATAACTTAG-TAGTAAATAACTAATAA
32525164 TTTAGTA-TAAATTA
1 TTTA-TAGTAAATTA
32525178 ATAATGATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 11 0.22
44 37 0.76
45 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.41
Consensus pattern (43 bp):
TTTATAGTAAATTATTGATAACTTAGTAGTAAATAACTAATAA
Found at i:32525238 original size:22 final size:22
Alignment explanation
Indices: 32525203--32525274 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
32525193 TAAATTAATT
*
32525203 AATTATTAACAACTTCT-TAGTA
1 AATTATCAACAACTT-TATAGTA
*
32525225 AATTATCAATAACTTTATAGTA
1 AATTATCAACAACTTTATAGTA
* * *
32525247 AATTAGT-AATAATTTTATAATA
1 AATTA-TCAACAACTTTATAGTA
32525269 AATTAT
1 AATTAT
32525275 AGTAAATTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
21 2 0.05
22 41 0.93
23 1 0.02
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (22 bp):
AATTATCAACAACTTTATAGTA
Found at i:32525269 original size:11 final size:10
Alignment explanation
Indices: 32525223--32525334 Score: 71
Period size: 11 Copynumber: 10.3 Consensus size: 10
32525213 AACTTCTTAG
32525223 TAAATTATCAA
1 TAAATTAT-AA
* *
32525234 TAACTTTATAG
1 TAA-ATTATAA
32525245 TAAATTAGTAA
1 TAAATTA-TAA
*
32525256 TAATTTTATAA
1 TAA-ATTATAA
*
32525267 TAAATTATAG
1 TAAATTATAA
32525277 TAAATTAGTAA
1 TAAATTA-TAA
*
32525288 TAACTTTATAA
1 TAA-ATTATAA
*
32525299 TAAATTATCTA
1 TAAATTAT-AA
* *
32525310 TAACTTAATAG
1 TAAATT-ATAA
32525321 TAAATTATTAA
1 TAAATTA-TAA
32525332 TAA
1 TAA
32525335 TTTAGTAGTA
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
10 20 0.26
11 45 0.58
12 12 0.16
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (10 bp):
TAAATTATAA
Found at i:32525277 original size:32 final size:32
Alignment explanation
Indices: 32525239--32525306 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
32525229 ATCAATAACT
*
32525239 TTATAGTAAATTAGTAATAATTTTATAATAAA
1 TTATAGTAAATTAGTAATAACTTTATAATAAA
32525271 TTATAGTAAATTAGTAATAACTTTATAATAAA
1 TTATAGTAAATTAGTAATAACTTTATAATAAA
32525303 TTAT
1 TTAT
32525307 CTATAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (32 bp):
TTATAGTAAATTAGTAATAACTTTATAATAAA
Found at i:32525282 original size:22 final size:22
Alignment explanation
Indices: 32525238--32525347 Score: 59
Period size: 22 Copynumber: 5.0 Consensus size: 22
32525228 TATCAATAAC
* *
32525238 TTTATAGTAAATTAGTAAT-AAT
1 TTTATAATAAATTA-TAGTAAAT
32525260 TTTATAATAAATTATAGTAAA-
1 TTTATAATAAATTATAGTAAAT
* *
32525281 -TTAGTAATAACTTTATAATAAAT
1 TTTA-TAATAA-ATTATAGTAAAT
* * *
32525304 TATCT-ATAACTTAATAGTAAAT
1 TTTATAATAAATT-ATAGTAAAT
* *
32525326 TAT-TAATAATTTAGTAGTAAAT
1 TTTATAATAAATTA-TAGTAAAT
32525348 CATTTTAACT
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
20 3 0.04
21 13 0.18
22 53 0.75
23 1 0.01
24 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (22 bp):
TTTATAATAAATTATAGTAAAT
Found at i:32525325 original size:54 final size:54
Alignment explanation
Indices: 32525220--32525328 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
32525210 AACAACTTCT
* * *
32525220 TAGTAAATTATCAATAACTTTATAGTAAATTAGTAATAATTTTATAATAAATTA
1 TAGTAAATTATCAATAACTTTATAATAAATTAGTAATAACTTAATAATAAATTA
* *
32525274 TAGTAAATTAGT-AATAACTTTATAATAAATTA-TCTATAACTTAATAGTAAATTA
1 TAGTAAATTA-TCAATAACTTTATAATAAATTAGT-AATAACTTAATAATAAATTA
32525328 T
1 T
32525329 TAATAATTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 1 0.02
54 46 0.96
55 1 0.02
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (54 bp):
TAGTAAATTATCAATAACTTTATAATAAATTAGTAATAACTTAATAATAAATTA
Found at i:32525327 original size:44 final size:43
Alignment explanation
Indices: 32525273--32525368 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 43
32525263 ATAATAAATT
*
32525273 ATAGTAAATTAGTAATAACTTTA-TAATAAATTATCTATAACTTA
1 ATAGTAAATTAGTAATAA-TTTAGTAATAAATCAT-TATAACTTA
* * *
32525317 ATAGTAAATTATTAATAATTTAGTAGTAAATCATTTTAACTTA
1 ATAGTAAATTAGTAATAATTTAGTAATAAATCATTATAACTTA
32525360 ATAGTAAAT
1 ATAGTAAAT
32525369 CATCTATAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 21 0.45
44 26 0.55
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (43 bp):
ATAGTAAATTAGTAATAATTTAGTAATAAATCATTATAACTTA
Found at i:32525347 original size:76 final size:74
Alignment explanation
Indices: 32525171--32525347 Score: 205
Period size: 76 Copynumber: 2.4 Consensus size: 74
32525161 TAATTTAGTA
* * * * *
32525171 TAAATTAATAATGATTTAGTTGTAAATTAATTAATTATTAACAACTTCTTAGTAAATTATCAATA
1 TAAATTAATAATAATTTAGTAGTAAATTAATAAATTAGTAACAACTTCTTAATAAATTATCAATA
*
32525236 ACTTTATAG
66 ACTTAATAG
* * *
32525245 TAAATTAGTAATAATTTTA-TAATAAATTATAGTAAATTAGTAATAACTT-TATAATAAATTATC
1 TAAATTAATAATAA-TTTAGTAGTAAATTA-A-TAAATTAGTAACAACTTCT-TAATAAATTATC
*
32525308 TATAACTTAATAG
62 AATAACTTAATAG
*
32525321 TAAATTATTAATAATTTAGTAGTAAAT
1 TAAATTAATAATAATTTAGTAGTAAAT
32525348 CATTTTAACT
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
74 20 0.23
75 10 0.12
76 56 0.65
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (74 bp):
TAAATTAATAATAATTTAGTAGTAAATTAATAAATTAGTAACAACTTCTTAATAAATTATCAATA
ACTTAATAG
Found at i:32525390 original size:22 final size:21
Alignment explanation
Indices: 32525273--32525381 Score: 101
Period size: 22 Copynumber: 5.0 Consensus size: 21
32525263 ATAATAAATT
* * *
32525273 ATAGTAAATTAGTAATAACTTT
1 ATAGTAAATCA-TTATAACTTA
* *
32525295 ATAATAAATTATCTATAACTTA
1 ATAGTAAATCAT-TATAACTTA
* *
32525317 ATAGTAAATTATTAATAATTTA
1 ATAGTAAATCATT-ATAACTTA
* *
32525339 GTAGTAAATCATTTTAACTTA
1 ATAGTAAATCATTATAACTTA
32525360 ATAGTAAATCATCTATAACTTA
1 ATAGTAAATCAT-TATAACTTA
32525382 GTGATAAATT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
21 19 0.26
22 54 0.74
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (21 bp):
ATAGTAAATCATTATAACTTA
Found at i:32525390 original size:65 final size:65
Alignment explanation
Indices: 32525288--32525410 Score: 158
Period size: 65 Copynumber: 1.9 Consensus size: 65
32525278 AAATTAGTAA
* * * * *
32525288 TAACTTTATAATAAATTATCTATAACTTAATAGTAAATTATTAATAATTTAGTAGTAAATCATTT
1 TAACTTAATAATAAATCATCTATAACTTAATAGTAAATTAATAATAATATAGAAGTAAATCATTT
* * *
32525353 TAACTTAATAGTAAATCATCTATAACTTAGT-GATAAATTAATGATAATATAGAAGTAA
1 TAACTTAATAATAAATCATCTATAACTTAATAG-TAAATTAATAATAATATAGAAGTAA
32525411 TCAGTGATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 1 0.02
65 48 0.98
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (65 bp):
TAACTTAATAATAAATCATCTATAACTTAATAGTAAATTAATAATAATATAGAAGTAAATCATTT
Found at i:32525737 original size:22 final size:22
Alignment explanation
Indices: 32525688--32525764 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
32525678 GTAAAGCATA
*
32525688 AATAACTT--TAGTAATTCAATT
1 AATAACTTAGTAGTAAAT-AATT
32525709 GAA-AACTTAGTAGTAAATAATT
1 -AATAACTTAGTAGTAAATAATT
* * *
32525731 AATAACTTAATAGTCAATTATT
1 AATAACTTAGTAGTAAATAATT
* *
32525753 AAAAAATTAGTA
1 AATAACTTAGTA
32525765 ATTGATCAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 7 0.16
22 31 0.69
23 7 0.16
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.36
Consensus pattern (22 bp):
AATAACTTAGTAGTAAATAATT
Found at i:32525954 original size:22 final size:22
Alignment explanation
Indices: 32525929--32525971 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32525919 TAGAAATCAT
32525929 TTATACCTTTATAAAAAATTAG
1 TTATACCTTTATAAAAAATTAG
* *
32525951 TTATAGCTTTATAATAAATTA
1 TTATACCTTTATAAAAAATTA
32525972 TCAATAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (22 bp):
TTATACCTTTATAAAAAATTAG
Found at i:32525990 original size:22 final size:22
Alignment explanation
Indices: 32525965--32526059 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 22
32525955 AGCTTTATAA
*
32525965 TAAATTA-TCAATAACTTAGTAG
1 TAAATTATTC-ATAACTTAATAG
32525987 TAAATTATTCATAACTTAATAG
1 TAAATTATTCATAACTTAATAG
* * * *
32526009 TAAACTATTGATAATTTAATAA
1 TAAATTATTCATAACTTAATAG
* * *
32526031 TAAATCATTAATAA-TATAATAA
1 TAAATTATTCATAACT-TAATAG
32526053 TAAATTA
1 TAAATTA
32526060 GTTATAATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.02
22 59 0.95
23 2 0.03
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (22 bp):
TAAATTATTCATAACTTAATAG
Found at i:32526127 original size:22 final size:20
Alignment explanation
Indices: 32525944--32526129 Score: 78
Period size: 22 Copynumber: 8.7 Consensus size: 20
32525934 CCTTTATAAA
* *
32525944 AAATTAGTTATAGCTTTATAAT
1 AAATTA-TTATAACTTAAT-AT
* *
32525966 AAATTATCAATAACTTAGTAGT
1 AAATTAT-TATAACTTAATA-T
32525988 AAATTATTCATAACTTAATAGT
1 AAATTATT-ATAACTTAATA-T
* *
32526010 AAACTATTGATAATTTAATAAT
1 AAATTATT-ATAACTTAAT-AT
*
32526032 AAATCATTAATAA-TATAATAAT
1 AAATTATT-ATAACT-TAAT-AT
32526054 AAATTAGTTATAA--TAATAT
1 AAATTA-TTATAACTTAATAT
* *
32526073 --ATCAGTGT-TAACTTAATCGT
1 AAATTA-T-TATAACTTAAT-AT
*
32526093 AATTTATTGATAACTTAATGAT
1 AAATTATT-ATAACTTAAT-AT
32526115 AAATTAGTTATAACT
1 AAATTA-TTATAACT
32526130 AAGTTGTAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
17 8 0.06
18 1 0.01
19 6 0.05
20 6 0.05
21 4 0.03
22 99 0.77
23 5 0.04
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (20 bp):
AAATTATTATAACTTAATAT
Found at i:32526253 original size:22 final size:22
Alignment explanation
Indices: 32526205--32526268 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
32526195 GTAAAGTATG
* * * *
32526205 GATAATTTAATAATAAACTATT
1 GATATTTTAATAGTAAATTAGT
*
32526227 CATATTTTAATAGTAAATTAGT
1 GATATTTTAATAGTAAATTAGT
*
32526249 GATATAATTTAGTAGTAAAT
1 GATAT--TTTAATAGTAAAT
32526269 CATTTCTAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 21 0.64
24 12 0.36
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (22 bp):
GATATTTTAATAGTAAATTAGT
Found at i:32532992 original size:68 final size:68
Alignment explanation
Indices: 32532905--32533041 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
32532895 TTGGAACCAC
32532905 TCAAATCATCCAGAAACAGGACTACATGATGCCTCTAGCCCAAGCAAAAGAAATCAATGAAACGA
1 TCAAATCATCCAGAAACAGGACTACATGATGCCTCTAGCCCAAGCAAAAGAAATCAATGAAACGA
32532970 AAT
66 AAT
*
32532973 TCAAATCATCCAGAAACAGGACTACATGATGCCTCTAGCCTAAGCAAAAGAAATCAATGAAACGA
1 TCAAATCATCCAGAAACAGGACTACATGATGCCTCTAGCCCAAGCAAAAGAAATCAATGAAACGA
32533038 AAT
66 AAT
32533041 T
1 T
32533042 AAGGAATCAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.18
Consensus pattern (68 bp):
TCAAATCATCCAGAAACAGGACTACATGATGCCTCTAGCCCAAGCAAAAGAAATCAATGAAACGA
AAT
Found at i:32533752 original size:2 final size:2
Alignment explanation
Indices: 32533741--32533776 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
32533731 GCATCTCAAT
32533741 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32533777 TATGTAATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32536072 original size:23 final size:25
Alignment explanation
Indices: 32536046--32536091 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
32536036 TATTTAATTA
*
32536046 ATTAATTTAAATT-AT-TATTTTAG
1 ATTAATTGAAATTAATATATTTTAG
32536069 ATTAATTGAAATTAATATATTTT
1 ATTAATTGAAATTAATATATTTT
32536092 TATTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 2 0.10
25 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTAATTGAAATTAATATATTTTAG
Found at i:32539729 original size:19 final size:19
Alignment explanation
Indices: 32539705--32539743 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32539695 CCCATTCGAC
32539705 GTTTGCAGCAGCTTCAACA
1 GTTTGCAGCAGCTTCAACA
32539724 GTTTGCAGCAGCTTCAACA
1 GTTTGCAGCAGCTTCAACA
32539743 G
1 G
32539744 AACCCATTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (19 bp):
GTTTGCAGCAGCTTCAACA
Found at i:32539818 original size:57 final size:58
Alignment explanation
Indices: 32539707--32539851 Score: 189
Period size: 50 Copynumber: 2.6 Consensus size: 58
32539697 CATTCGACGT
* *
32539707 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGACGTTTGCAGC
1 TTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACAGAACCCATTCGACATTTGCAGC
* *
32539765 TTGCAGCAGCTTCAACAGTTTACAG-ATCTTGAACAGAACCCATTCGACA--T-----
1 TTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACAGAACCCATTCGACATTTGCAGC
*
32539815 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAG
1 TTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACAG
32539852 TTTGCAGCAG
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
50 24 0.30
51 9 0.11
55 1 0.01
57 21 0.27
58 24 0.30
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (58 bp):
TTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACAGAACCCATTCGACATTTGCAGC
Found at i:32539838 original size:19 final size:19
Alignment explanation
Indices: 32539814--32540354 Score: 252
Period size: 19 Copynumber: 30.0 Consensus size: 19
32539804 CCATTCGACA
32539814 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32539833 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32539852 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
* *
32539871 TTTGCAG-ATCTTGAACAG
1 TTTGCAGCAGCTTCAACAG
32539889 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
* * * *
32539908 TTTACAG-ATCTTGAACAA
1 TTTGCAGCAGCTTCAACAG
**** * **
32539926 AACCCATTC-GACGTT-TGCAG
1 TTTGCA-GCAG-C-TTCAACAG
*
32539946 CTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
* *
32539965 TTTGCAG-ATCTTGAACAG
1 TTTGCAGCAGCTTCAACAG
** * **
32539983 --AAC-CCA--TTGGAC-G
1 TTTGCAGCAGCTTCAACAG
32539996 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540015 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540034 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540053 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
** * *
32540072 --AAC-CCA--TTCGAC-G
1 TTTGCAGCAGCTTCAACAG
32540085 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
* * *
32540104 TTTGCAG-ATCTTGAACAA
1 TTTGCAGCAGCTTCAACAG
**** * **
32540122 AACCCATTC-GACGTT-TGCAG
1 TTTGCA-GCAG-C-TTCAACAG
* *
32540142 CTTGCAGCAGCTTCAACAA
1 TTTGCAGCAGCTTCAACAG
* *
32540161 TTTGCAG-ATCTTGAACA-
1 TTTGCAGCAGCTTCAACAG
*** * *
32540178 -AAAC-CCA--TTCGAC-G
1 TTTGCAGCAGCTTCAACAG
32540192 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
*
32540211 TTTACAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540230 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
* * *
32540249 TTTGCA-TATCTTGAACAG
1 TTTGCAGCAGCTTCAACAG
* *
32540267 TTTGCAGTAGCTTCAATAG
1 TTTGCAGCAGCTTCAACAG
* * *
32540286 TTTACAG-ATCTTGAACAG
1 TTTGCAGCAGCTTCAACAG
** * **
32540304 --AAC-CCA--TTGGAC-G
1 TTTGCAGCAGCTTCAACAG
*
32540317 TTTGCAGCAACTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540336 TTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAG
32540355 AACCCATTCG
Statistics
Matches: 382, Mismatches: 99, Indels: 82
0.68 0.18 0.15
Matches are distributed among these distances:
13 3 0.01
14 19 0.05
15 4 0.01
16 17 0.04
17 1 0.00
18 98 0.26
19 224 0.59
20 12 0.03
21 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (19 bp):
TTTGCAGCAGCTTCAACAG
Found at i:32539897 original size:37 final size:37
Alignment explanation
Indices: 32539814--32539924 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
32539804 CCATTCGACA
* *
32539814 TTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAG
1 TTTGCAGCAGCTTCAACAGTTTGCAG-ATCTTGAACAG
32539852 TTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAG
1 TTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAG
*
32539889 TTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACA
1 TTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACA
32539925 AAACCCATTC
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 44 0.63
38 26 0.37
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (37 bp):
TTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAG
Found at i:32539999 original size:31 final size:31
Alignment explanation
Indices: 32539907--32540002 Score: 87
Period size: 31 Copynumber: 3.3 Consensus size: 31
32539897 AGCTTCAACA
* *
32539907 GTTTACAGATCTTGAACAAAACCCATTCGAC
1 GTTTGCAGATCTTGAACAGAACCCATTCGAC
* * *
32539938 GTTTGCAG--CTTG--CAGCA-GC-TTCAAC
1 GTTTGCAGATCTTGAACAGAACCCATTCGAC
*
32539963 AGTTTGCAGATCTTGAACAGAACCCATTGGAC
1 -GTTTGCAGATCTTGAACAGAACCCATTCGAC
32539995 GTTTGCAG
1 GTTTGCAG
32540003 CAGCTTCAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
25 5 0.10
26 9 0.18
27 3 0.06
28 4 0.08
29 4 0.08
30 4 0.08
31 16 0.33
32 4 0.08
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (31 bp):
GTTTGCAGATCTTGAACAGAACCCATTCGAC
Found at i:32540013 original size:182 final size:182
Alignment explanation
Indices: 32539705--32540386 Score: 1000
Period size: 182 Copynumber: 3.7 Consensus size: 182
32539695 CCCATTCGAC
* * * *
32539705 GTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGACGTTTGCAGCTTGCA
1 GTTTGCAGCAGCTTCAACAGTTTACAG-ATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCA
* *
32539770 GCAGCTTCAACAGTTTACAGATCTTGAACAGAACCCATTCGACATTTGCAGCAGCTTCAACAGTT
65 GCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAGTT
32539835 TGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACA
130 TGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACA
32539888 GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCAG
1 GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCAG
*
32539953 CAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTGGACGTTTGCAGCAGCTTCAACAGTTT
66 CAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAGTTT
*
32540018 GCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGA
131 GCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAG-ATCTT-----G-A---A--C-A
*
32540083 CGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCA
1 -GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCA
* *
32540148 GCAGCTTCAACAATTTGCAGATCTTGAACAAAACCCATTCGACGTTTGCAGCAGCTTCAACAGTT
65 GCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAGTT
* *
32540213 TACAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCATATCTTGAACA
130 TGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACA
* * * *
32540266 GTTTGCAGTAGCTTCAATAGTTTACAGATCTTGAACAGAACCCATTGGACGTTTGCA----GCA-
1 GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCAG
* *
32540326 -A-CTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAG
66 CAGCTTCAACAGTTTGCAG-ATCTTGAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAG
32540387 AACCCGATCC
Statistics
Matches: 460, Mismatches: 24, Indels: 37
0.88 0.05 0.07
Matches are distributed among these distances:
175 15 0.03
176 41 0.09
178 3 0.01
182 191 0.42
183 31 0.07
184 1 0.00
186 1 0.00
188 1 0.00
189 2 0.00
190 1 0.00
192 1 0.00
194 1 0.00
195 5 0.01
196 166 0.36
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (182 bp):
GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATTCGACGTTTGCAGCTTGCAG
CAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAGTTT
GCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACA
Found at i:32540141 original size:31 final size:31
Alignment explanation
Indices: 32540103--32540198 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 31
32540093 AGCTTCAACA
32540103 GTTTGCAGATCTTGAACAAAACCCATTCGAC
1 GTTTGCAGATCTTGAACAAAACCCATTCGAC
** * *
32540134 GTTTGCAG--CTTG--CAGCA-GC-TTCAAC
1 GTTTGCAGATCTTGAACAAAACCCATTCGAC
*
32540159 AATTTGCAGATCTTGAACAAAACCCATTCGAC
1 -GTTTGCAGATCTTGAACAAAACCCATTCGAC
32540191 GTTTGCAG
1 GTTTGCAG
32540199 CAGCTTCAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
25 5 0.10
26 8 0.17
27 3 0.06
28 4 0.08
29 4 0.08
30 3 0.06
31 16 0.33
32 5 0.10
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (31 bp):
GTTTGCAGATCTTGAACAAAACCCATTCGAC
Found at i:32540153 original size:196 final size:193
Alignment explanation
Indices: 32539815--32540386 Score: 779
Period size: 196 Copynumber: 3.1 Consensus size: 193
32539805 CATTCGACAT
32539815 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAG-A
1 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCA
*
32539879 TCTT-----GA-A--C-A-GTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATT
66 GCTTCAACAGACATTCGACGTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATT
*
32539934 CGACGTTTGCAGCTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTGGACGT
131 CGACGTTTGCAGCTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGT
32539997 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCA
1 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCA
*
32540062 GCTTCAACAGAACCCATTCGACGTTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAAAACCC
66 GCTTCAACAG-A--CATTCGACGTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCC
* *
32540127 ATTCGACGTTTGCAGCTTGCAGCAGCTTCAACAATTTGCAGATCTTGAACAAAACCCATTCGACG
128 ATTCGACGTTTGCAGCTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACG
32540192 T
193 T
* *
32540193 TTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCA-TA
1 TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCA
* * * *
32540257 TCTT-----GA-A--C-A-GTTTGCAGTAGCTTCAATAGTTTACAGATCTTGAACAGAACCCATT
66 GCTTCAACAGACATTCGACGTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATT
* * *
32540312 GGACGTTTGCA----GCA--A-CTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGACGT
131 CGACGTTTGCAGCTTGCAGCAGCTTCAACAGTTTGCAG-ATCTTGAACAGAACCCATTCGACGT
32540369 TTGCAGCAGCTTCAACAG
1 TTGCAGCAGCTTCAACAG
32540387 AACCCGATCC
Statistics
Matches: 358, Mismatches: 17, Indels: 36
0.87 0.04 0.09
Matches are distributed among these distances:
175 15 0.04
176 41 0.11
178 3 0.01
182 115 0.32
183 5 0.01
184 1 0.00
186 1 0.00
188 1 0.00
189 2 0.01
190 1 0.00
192 1 0.00
194 1 0.00
195 5 0.01
196 166 0.46
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (193 bp):
TTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCAGCA
GCTTCAACAGACATTCGACGTTTGCAGCAGCTTCAACAGTTTACAGATCTTGAACAAAACCCATT
CGACGTTTGCAGCTTGCAGCAGCTTCAACAGTTTGCAGATCTTGAACAGAACCCATTCGACGT
Found at i:32540279 original size:37 final size:37
Alignment explanation
Indices: 32540191--32540303 Score: 154
Period size: 37 Copynumber: 3.0 Consensus size: 37
32540181 CCCATTCGAC
* *
32540191 GTTTGCAGCAGCTTCAACAGTTTACAGCAGCTTCAACA
1 GTTTGCAGCAGCTTCAACAGTTTACA-CATCTTGAACA
* *
32540229 GTTTGCAGCAGCTTCAACAGTTTGCATATCTTGAACA
1 GTTTGCAGCAGCTTCAACAGTTTACACATCTTGAACA
* * *
32540266 GTTTGCAGTAGCTTCAATAGTTTACAGATCTTGAACA
1 GTTTGCAGCAGCTTCAACAGTTTACACATCTTGAACA
32540303 G
1 G
32540304 AACCCATTGG
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
37 42 0.63
38 25 0.37
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (37 bp):
GTTTGCAGCAGCTTCAACAGTTTACACATCTTGAACA
Found at i:32540369 original size:51 final size:51
Alignment explanation
Indices: 32540210--32540386 Score: 194
Period size: 51 Copynumber: 3.4 Consensus size: 51
32540200 AGCTTCAACA
* ****
32540210 GTTTACAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGTTTGCATATCTTGAAC
1 GTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCAT-TC--G-AC
* * * * * *
32540265 AGTTTGCAGTAGCTTCAATAGTTTACAG-ATCTTGAACAGAACCCATTGGAC
1 -GTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGAC
*
32540316 GTTTGCAGCAACTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGAC
1 GTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGAC
32540367 GTTTGCAGCAGCTTCAACAG
1 GTTTGCAGCAGCTTCAACAG
32540387 AACCCGATCC
Statistics
Matches: 101, Mismatches: 19, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
50 23 0.23
51 41 0.41
52 1 0.01
54 1 0.01
55 12 0.12
56 23 0.23
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (51 bp):
GTTTGCAGCAGCTTCAACAGTTTGCAGCAGCTTCAACAGAACCCATTCGAC
Found at i:32540614 original size:25 final size:25
Alignment explanation
Indices: 32540586--32540639 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
32540576 GTTTAAATAA
* *
32540586 GAATGCCTTAATTAAATACCTTTAT
1 GAATGCCTAAATTAAATACCCTTAT
32540611 GAATGCCTAAATTAAATACCCTTAT
1 GAATGCCTAAATTAAATACCCTTAT
32540636 GAAT
1 GAAT
32540640 ATTGTGGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (25 bp):
GAATGCCTAAATTAAATACCCTTAT
Found at i:32544447 original size:24 final size:26
Alignment explanation
Indices: 32544403--32544459 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
32544393 TCGAATAATC
32544403 CGAG-TTTTTTTTTCGAGTATAAAAAT
1 CGAGCTTTTTTTTTC-AGTATAAAAAT
**
32544429 CGAGCTTTTTTTTT-A-TATATTAAT
1 CGAGCTTTTTTTTTCAGTATAAAAAT
32544453 CGAGCTT
1 CGAGCTT
32544460 AAATCGAGCG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 14 0.50
25 1 0.04
26 4 0.14
27 9 0.32
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (26 bp):
CGAGCTTTTTTTTTCAGTATAAAAAT
Found at i:32557997 original size:32 final size:32
Alignment explanation
Indices: 32557956--32558020 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
32557946 ATCTACTTCC
* *
32557956 TAAATGGAATAAGTAGATATTCTAGTTATAGT
1 TAAAAGGAATAAGTAGATATTCAAGTTATAGT
32557988 TAAAAGGAATAAGTAGATATTCAAGTTATAGT
1 TAAAAGGAATAAGTAGATATTCAAGTTATAGT
32558020 T
1 T
32558021 TGGTATTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.35
Consensus pattern (32 bp):
TAAAAGGAATAAGTAGATATTCAAGTTATAGT
Done.