Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 16 of 160
Found at i:4763754 original size:2 final size:2
Alignment explanation
Indices: 4763741--4763790 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
4763731 TTTCTAATGC
* * * *
4763741 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TG TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4763783 TA TA TA TA
1 TA TA TA TA
4763791 AATTACCCTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4764337 original size:25 final size:25
Alignment explanation
Indices: 4764309--4764379 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
4764299 AAAGTCAAAT
* **
4764309 GTTCGAGATGTGGGAAGAGCTGATG
1 GTTCGAGATATGGGAAGAGCTGACA
* * *
4764334 GTTCGAGACATGGAAAGAGTTGACA
1 GTTCGAGATATGGGAAGAGCTGACA
*
4764359 GTTTGAGATATGGGAAGAGCT
1 GTTCGAGATATGGGAAGAGCT
4764380 TTGTTTGAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.38, T:0.24
Consensus pattern (25 bp):
GTTCGAGATATGGGAAGAGCTGACA
Found at i:4764636 original size:11 final size:11
Alignment explanation
Indices: 4764620--4764681 Score: 88
Period size: 11 Copynumber: 5.6 Consensus size: 11
4764610 AATCTCATAA
4764620 GAGATTTGTTT
1 GAGATTTGTTT
*
4764631 GAGATTTGTTA
1 GAGATTTGTTT
4764642 GAGATTTGTTT
1 GAGATTTGTTT
* *
4764653 GGGATTTGTTA
1 GAGATTTGTTT
4764664 GAGATTTGTTT
1 GAGATTTGTTT
*
4764675 GGGATTT
1 GAGATTT
4764682 ATCAGATATT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 44 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:4764647 original size:22 final size:22
Alignment explanation
Indices: 4764619--4764681 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
4764609 AAATCTCATA
*
4764619 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGGGATTTGTT
4764641 AGAGATTTGTTTGGGATTTGTT
1 AGAGATTTGTTTGGGATTTGTT
4764663 AGAGATTTGTTTGGGATTT
1 AGAGATTTGTTTGGGATTT
4764682 ATCAGATATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGGGATTTGTT
Found at i:4764795 original size:52 final size:52
Alignment explanation
Indices: 4764708--4764853 Score: 188
Period size: 52 Copynumber: 2.8 Consensus size: 52
4764698 TGGACAAGAA
* *
4764708 GACTTGCAAAAGAAGAATT-T-CAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAAAGAAGAATTCTAAAAG-GAAAG-GGATTCTTAATAGGCAAGTTT
*
4764760 GACTTGCAAAAGATGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAAAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
* ** * *
4764812 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAAT
1 GACTTGCAAAAGAAGAATTCTAAAAGGAAAGGGATTCTTAAT
4764854 GAGCAAATTT
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
52 74 0.89
53 6 0.07
54 3 0.04
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.26
Consensus pattern (52 bp):
GACTTGCAAAAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:4771007 original size:3 final size:3
Alignment explanation
Indices: 4770999--4771031 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
4770989 GTCTTTCTCA
*
4770999 TTC TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
4771032 GTCAGCTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:4771014 original size:12 final size:12
Alignment explanation
Indices: 4770993--4771031 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
4770983 TTCTACGTCT
*
4770993 TTCTCATTCTTC
1 TTCTCCTTCTTC
4771005 TTCTCCTTCTTC
1 TTCTCCTTCTTC
*
4771017 TTCTTCTTCTTC
1 TTCTCCTTCTTC
4771029 TTC
1 TTC
4771032 GTCAGCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCTCCTTCTTC
Found at i:4775901 original size:17 final size:17
Alignment explanation
Indices: 4775881--4775913 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4775871 ATTTTTTTAT
4775881 AAAATTATAAATATAAA
1 AAAATTATAAATATAAA
*
4775898 AAAATTATAATTATAA
1 AAAATTATAAATATAA
4775914 TCAATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATTATAAATATAAA
Found at i:4778653 original size:30 final size:30
Alignment explanation
Indices: 4778619--4778749 Score: 131
Period size: 30 Copynumber: 4.4 Consensus size: 30
4778609 TTATATTAAG
*
4778619 AGTTTATTTAAATATAAATTAAAAGATAAA
1 AGTTTATTTAAATATAAATTAAAATATAAA
* *
4778649 AGTTTATTTAGATATAAATTAAAATTTAAA
1 AGTTTATTTAAATATAAATTAAAATATAAA
* * * *
4778679 AATTTATTTATATACAAATTAAAA-ATTAA
1 AGTTTATTTAAATATAAATTAAAATATAAA
** * * *
4778708 TTTTTATTTGAATAT-AATAAAAATATAAC
1 AGTTTATTTAAATATAAATTAAAATATAAA
*
4778737 ATTTTATTTAAAT
1 AGTTTATTTAAAT
4778750 GTGACAATTT
Statistics
Matches: 82, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
28 7 0.09
29 27 0.33
30 48 0.59
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (30 bp):
AGTTTATTTAAATATAAATTAAAATATAAA
Found at i:4778745 original size:58 final size:60
Alignment explanation
Indices: 4778621--4778749 Score: 147
Period size: 58 Copynumber: 2.2 Consensus size: 60
4778611 ATATTAAGAG
* * *
4778621 TTTATTTAAATATAAATTAAAAGATAAAAGTTTATTTAGATATAAATTAAAATTTAAAAA
1 TTTATTTAAATACAAATTAAAAGATAAAAGTTTATTTAGATATAAATAAAAATATAAAAA
* * ** * *
4778681 TTTATTTATATACAAATTAAAA-ATTAATTTTTATTT-GA-ATATAATAAAAATATAACAT
1 TTTATTTAAATACAAATTAAAAGATAAAAGTTTATTTAGATATA-AATAAAAATATAAAAA
4778739 TTTATTTAAAT
1 TTTATTTAAAT
4778750 GTGACAATTT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
57 3 0.05
58 24 0.41
59 11 0.19
60 20 0.34
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (60 bp):
TTTATTTAAATACAAATTAAAAGATAAAAGTTTATTTAGATATAAATAAAAATATAAAAA
Found at i:4780269 original size:20 final size:20
Alignment explanation
Indices: 4780232--4780270 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4780222 ATACTTTAAA
**
4780232 GAAATATAATTTTTTTAATT
1 GAAATATAATTTAATTAATT
*
4780252 GAAATTTAATTTAATTAAT
1 GAAATATAATTTAATTAAT
4780271 CTATAAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
GAAATATAATTTAATTAATT
Found at i:4785088 original size:3 final size:3
Alignment explanation
Indices: 4785080--4785113 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
4785070 TCTCCGTTAT
4785080 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4785114 ATGTTTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:4787009 original size:15 final size:17
Alignment explanation
Indices: 4786990--4787028 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
4786980 CAAATACAAG
4786990 ATAATATAATATT-ATT
1 ATAATATAATATTAATT
*
4787006 -TAATCTAATATTAATT
1 ATAATATAATATTAATT
4787022 ATAATAT
1 ATAATAT
4787029 TATCTCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATATAATATTAATT
Found at i:4789416 original size:17 final size:16
Alignment explanation
Indices: 4789359--4789417 Score: 52
Period size: 17 Copynumber: 3.8 Consensus size: 16
4789349 TTTGAATTTT
*
4789359 TTTATTTT-TTATATA
1 TTTATTTTATTAAATA
4789374 -TTATTTTATT-AATA
1 TTTATTTTATTAAATA
**
4789388 TTTATGCATATTAAATA
1 TTTAT-TTTATTAAATA
4789405 TTTATATTTATTA
1 TTTAT-TTTATTA
4789418 GATTAAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
14 10 0.29
15 6 0.18
16 4 0.12
17 14 0.41
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTATTTTATTAAATA
Found at i:4789496 original size:20 final size:22
Alignment explanation
Indices: 4789471--4789520 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
4789461 GTTAATTTTT
4789471 AAAATAAACTT-TAAAAATA-A
1 AAAATAAACTTATAAAAATACA
*
4789491 AAAATAAACTTAATAATAATACA
1 AAAATAAACTT-ATAAAAATACA
4789514 AAAATAA
1 AAAATAA
4789521 TAAAAATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
22 7 0.27
23 8 0.31
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAATAAACTTATAAAAATACA
Found at i:4801716 original size:47 final size:47
Alignment explanation
Indices: 4801533--4801812 Score: 246
Period size: 47 Copynumber: 5.8 Consensus size: 47
4801523 CATATGAGAT
* *
4801533 TTTTAAAGTTGTTGAGGCTCTACTGAGATGGACTTTTT-AAGAT-GAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAT-GAGTTTTTCAAGATAGAA
* * * *
4801579 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAACCTTTTTCAAGATGAGATTT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGATG-A-GTTTTTCAAGAT-AGA--A
*
4801631 TTTTAAAAGTTATTGAGCCTCTACTGAGA-GAAAGTTTTTCAAGATA-AA
1 TTTT-AAAGTTGTTGAGCCTCTACTGAGATG--AGTTTTTCAAGATAGAA
* * * *
4801679 TTTTAAAGTTGTCGAGCCTCTGCTTAGATGAGTTTTTTCAAGATGAGATT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGATGAG-TTTTTCAAGAT-AGA-A
* * * *
4801729 TTTTAAAGTTGTTAAACCTCTACTGATAGGAGTTTTTCAAGA-AGAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGATGAGTTTTTCAAGATAGAA
* * *
4801775 TTTTTAAAGTTGTTGAGCCTCTGCTTAGATGAATTTTT
1 -TTTTAAAGTTGTTGAGCCTCTACTGAGATGAGTTTTT
4801813 GAAATTGTTA
Statistics
Matches: 191, Mismatches: 28, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 29 0.15
47 70 0.37
48 11 0.06
49 11 0.06
50 28 0.15
51 1 0.01
52 16 0.08
53 24 0.13
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (47 bp):
TTTTAAAGTTGTTGAGCCTCTACTGAGATGAGTTTTTCAAGATAGAA
Found at i:4801784 original size:97 final size:96
Alignment explanation
Indices: 4801526--4801812 Score: 373
Period size: 97 Copynumber: 2.9 Consensus size: 96
4801516 TCTAGAACAT
* * *
4801526 ATGAGA-TTTTTAAAGTTGTTGAGGCTCTACTGAGATGGACTTTTT-AAGATGAATTTTAAAGTT
1 ATGAGATTTTTTAAAGTTGTTGAGCCTCTACTGAGA-GGAGTTTTTCAAGAAGAATTTTAAAGTT
* * *
4801589 GTTGAGCCTCTGCTGAGAGGAACCTTTTTCAAG
65 GTTGAGCCTCTGCTTAGATGAA-TTTTTTCAAG
* *
4801622 ATGAGATTTTTTTAAAAGTTATTGAGCCTCTACTGAGAGAAAGTTTTTCAAGATA-AATTTTAAA
1 ATGAGA-TTTTTT-AAAGTTGTTGAGCCTCTACTGAGAG-GAGTTTTTCAAGA-AGAATTTTAAA
* *
4801686 GTTGTCGAGCCTCTGCTTAGATGAGTTTTTTCAAG
62 GTTGTTGAGCCTCTGCTTAGATGAATTTTTTCAAG
* * *
4801721 ATGAGATTTTTTAAAGTTGTTAAACCTCTACTGATAGGAGTTTTTCAAGAAGAATTTTTAAAGTT
1 ATGAGATTTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGTTTTTCAAGAAGAA-TTTTAAAGTT
4801786 GTTGAGCCTCTGCTTAGATGAATTTTT
65 GTTGAGCCTCTGCTTAGATGAATTTTT
4801813 GAAATTGTTA
Statistics
Matches: 166, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
95 1 0.01
96 20 0.12
97 56 0.34
98 12 0.07
99 43 0.26
100 34 0.20
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (96 bp):
ATGAGATTTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGTTTTTCAAGAAGAATTTTAAAGTTG
TTGAGCCTCTGCTTAGATGAATTTTTTCAAG
Found at i:4801821 original size:33 final size:33
Alignment explanation
Indices: 4801767--4801845 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
4801757 GGAGTTTTTC
* *
4801767 AAGAAGAATTTTTAAAGTTGTTGAGCCTCTGCT
1 AAGAGGAATTTTTAAAGTTGTTAAGCCTCTGCT
* *
4801800 TAGATGAATTTTTGAAA-TTGTTAAGCCTCTGCT
1 AAGAGGAATTTTT-AAAGTTGTTAAGCCTCTGCT
4801833 AAGAGGAATTTTT
1 AAGAGGAATTTTT
4801846 TCAAGATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 37 0.93
34 3 0.08
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (33 bp):
AAGAGGAATTTTTAAAGTTGTTAAGCCTCTGCT
Found at i:4801870 original size:130 final size:129
Alignment explanation
Indices: 4801693--4801933 Score: 285
Period size: 130 Copynumber: 1.9 Consensus size: 129
4801683 AAAGTTGTCG
* * * * * *
4801693 AGCCTCTGCTTAGATGAGTTTTTTCAAGATGAGATTTTTTAAAGTTGTTAAACCTCTACTGATAG
1 AGCCTCTGCTAAGAGGAATTTTTTCAAGATGAGATATTTTAAAGTTG-T--ACCTCTACTGAGAA
* *
4801758 GAG-TTTTTCAAGAAGA-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGATGAATTTTTGAAATTGT
63 AAGCTTTTTCAAGAAGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGATGAATTTTTGAAATTGT
4801821 TA
128 TA
* *
4801823 AGCCTCTGCTAAGAGGAATTTTTTCAAGAT-A-A-ATTTTAAAGTTGTTGTACTTCTGCTGAGAA
1 AGCCTCTGCTAAGAGGAATTTTTTCAAGATGAGATATTTTAAA---GTTGTACCTCTACTGAGAA
*
4801885 AAGCCTTTTTCAAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGA
63 AAG-CTTTTTCAAGAAGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGA
4801934 GGAGAACCTT
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
127 19 0.20
128 1 0.01
129 14 0.15
130 60 0.64
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (129 bp):
AGCCTCTGCTAAGAGGAATTTTTTCAAGATGAGATATTTTAAAGTTGTACCTCTACTGAGAAAAG
CTTTTTCAAGAAGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGATGAATTTTTGAAATTGTTA
Found at i:4801879 original size:80 final size:82
Alignment explanation
Indices: 4801719--4801869 Score: 202
Period size: 80 Copynumber: 1.9 Consensus size: 82
4801709 AGTTTTTTCA
* * *
4801719 AGATGAGATTTTTTAAAGTTGTTAAACCTCTACTGATAGGAGTTTTTCAAGAAGAATTTTTAAAG
1 AGATGAGATTTTTGAAAGTTGTTAAACCTCTACTAAGAGGAGTTTTTCAAGAAGAATTTTTAAAG
4801784 TTGTTGAGCCTCTGCTT
66 TTGTTGAGCCTCTGCTT
* * *
4801801 AGATGA-ATTTTTGAAA-TTGTTAAGCCTCTGCTAAGAGGAATTTTTTCAAGATA-AA-TTTTAA
1 AGATGAGATTTTTGAAAGTTGTTAAACCTCTACTAAGAGG-AGTTTTTCAAGA-AGAATTTTTAA
4801862 AGTTGTTG
64 AGTTGTTG
4801870 TACTTCTGCT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 32 0.52
81 22 0.36
82 7 0.11
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (82 bp):
AGATGAGATTTTTGAAAGTTGTTAAACCTCTACTAAGAGGAGTTTTTCAAGAAGAATTTTTAAAG
TTGTTGAGCCTCTGCTT
Found at i:4801928 original size:50 final size:48
Alignment explanation
Indices: 4801801--4801934 Score: 132
Period size: 50 Copynumber: 2.8 Consensus size: 48
4801791 GCCTCTGCTT
* *
4801801 AGATGAATTTTTGAAA-TTGTTAAGCCTCTGCTAAGAGGAATTTTTTCA
1 AGATGAATTTTT-AAAGTTGTTAAGCCTCTGCTAAGAGAAACTTTTTCA
* * * *
4801849 AGAT-AAATTTTAAAGTTGTTGTA-CTTCTGCTGAGA-AAAGCCTTTTTCA
1 AGATGAATTTTTAAAGTTGTT-AAGCCTCTGCTAAGAGAAA--CTTTTTCA
*
4801897 AGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGAG
1 AGATGA-ATTTTTAAAGTTGTTAAGCCTCTGCTAAGAG
4801935 GAGAACCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
46 5 0.07
47 21 0.31
48 16 0.24
49 2 0.03
50 24 0.35
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (48 bp):
AGATGAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGAAACTTTTTCA
Found at i:4802088 original size:50 final size:48
Alignment explanation
Indices: 4802025--4802131 Score: 151
Period size: 50 Copynumber: 2.2 Consensus size: 48
4802015 TTTAAAAATC
**
4802025 GTTGAGCCTCTACTTAAAGGAGCTTTTCCAAGATGATGAATTTTAAAGTT
1 GTTGAGCCTCTACTTAAAGGAGCTTTTCCAAGATGA--AATTTTAAAGCA
* * *
4802075 GTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGCA
1 GTTGAGCCTCTACTTAAAGGAGCTTTTCCAAGATGAAATTTTAAAGCA
4802123 GTTGAGCCT
1 GTTGAGCCT
4802132 TTGCTTAGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
48 18 0.35
50 34 0.65
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (48 bp):
GTTGAGCCTCTACTTAAAGGAGCTTTTCCAAGATGAAATTTTAAAGCA
Found at i:4802139 original size:48 final size:48
Alignment explanation
Indices: 4801940--4802150 Score: 184
Period size: 48 Copynumber: 4.5 Consensus size: 48
4801930 TAGAGGAGAA
* *
4801940 CCTTTACTAAGAGGAGCTTTTTCAAGATGAA-TTTTAAAGTTGTTGAG
1 CCTTTACTTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGCTGTTGAG
* * * **
4801987 CCTTTGCTTAAAGGAATCTTTTT----A--AATTTTTAAAAATCGTTGAG
1 CCTTTACTTAGAGG-AGCTTTTTCAAGATGAATTTTTAAAGCT-GTTGAG
* * * * *
4802031 CCTCTACTTAAAGGAGCTTTTCCAAGATGATGAATTTTAAAGTTGTTGAG
1 CCTTTACTTAGAGGAGCTTTTTCAAGATGA--ATTTTTAAAGCTGTTGAG
* *
4802081 CCTCTACTTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGCAGTTGAG
1 CCTTTACTTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGCTGTTGAG
* * *
4802129 CCTTTGCTTAGAGAAACTTTTT
1 CCTTTACTTAGAGGAGCTTTTT
4802151 AAAATTTTTA
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
42 2 0.02
43 14 0.11
44 19 0.15
47 12 0.09
48 40 0.31
49 1 0.01
50 34 0.26
51 9 0.07
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (48 bp):
CCTTTACTTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGCTGTTGAG
Found at i:4802183 original size:44 final size:43
Alignment explanation
Indices: 4802110--4802250 Score: 135
Period size: 44 Copynumber: 3.3 Consensus size: 43
4802100 TTTCAAGATG
* * *
4802110 AATTTTT-AAAG-CAGTTGAGCCTTTGCTTAGAGAAACTTTTTAA
1 AATTTTTAAAAGTCA-TTGAGCCTCTACTTAGA-AAACCTTTTAA
* *
4802153 AATTTTTAAAAGTCATTGAGCCTCTACTTAGAAGAGCCCTTTAA
1 AATTTTTAAAAGTCATTGAGCCTCTACTTAGAA-AACCTTTTAA
** * * *
4802197 AATTTTTAAAAGTTGTTAAGCCTCTGCTCAGAAAAGCCTTTT-A
1 AATTTTTAAAAGTCATTGAGCCTCTACTTAGAAAA-CCTTTTAA
4802240 AATTTTTAAAA
1 AATTTTTAAAA
4802251 ATGTTATTGA
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
43 21 0.26
44 59 0.72
45 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (43 bp):
AATTTTTAAAAGTCATTGAGCCTCTACTTAGAAAACCTTTTAA
Found at i:4802428 original size:8 final size:8
Alignment explanation
Indices: 4802412--4802461 Score: 75
Period size: 8 Copynumber: 6.2 Consensus size: 8
4802402 TTTATATTTA
*
4802412 TTTTATTT
1 TTTTCTTT
4802420 TTTTCTTT
1 TTTTCTTT
4802428 TTTTCTTT
1 TTTTCTTT
4802436 TTTTCTTT
1 TTTTCTTT
4802444 TTCTT-TTT
1 TT-TTCTTT
4802452 TTTTCTTT
1 TTTTCTTT
4802460 TT
1 TT
4802462 CGGTTTAGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
7 2 0.05
8 35 0.90
9 2 0.05
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTCTTT
Found at i:4802437 original size:22 final size:22
Alignment explanation
Indices: 4802419--4802462 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4802409 TTATTTTATT
4802419 TTTTTCTTTTTTTCTTTTTTTC
1 TTTTTCTTTTTTTCTTTTTTTC
4802441 TTTTTCTTTTTTT-TTCTTTTTC
1 TTTTTCTTTTTTTCTT-TTTTTC
4802463 GGTTTAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTCTTTTTTTCTTTTTTTC
Found at i:4803514 original size:20 final size:22
Alignment explanation
Indices: 4803489--4803538 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
4803479 GTTAATTTTT
4803489 AAAATAAACTT-TAAAAATA-A
1 AAAATAAACTTATAAAAATACA
*
4803509 AAAATAAACTTAATAATAATACA
1 AAAATAAACTT-ATAAAAATACA
4803532 AAAATAA
1 AAAATAA
4803539 TAAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
22 7 0.27
23 8 0.31
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAATAAACTTATAAAAATACA
Found at i:4807401 original size:5 final size:5
Alignment explanation
Indices: 4807391--4807445 Score: 82
Period size: 5 Copynumber: 11.8 Consensus size: 5
4807381 AACCTTTCCT
4807391 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT- ATAT- ATAT-
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
4807438 ATAT- ATAT
1 ATATC ATAT
4807446 ATTACATATC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 16 0.32
5 34 0.68
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (5 bp):
ATATC
Found at i:4807411 original size:15 final size:14
Alignment explanation
Indices: 4807390--4807461 Score: 80
Period size: 15 Copynumber: 5.2 Consensus size: 14
4807380 TAACCTTTCC
4807390 TATATCATATCATA
1 TATATCATATCATA
4807404 TCATATCATATCATA
1 T-ATATCATATCATA
4807419 TCATATCATAT-ATA
1 T-ATATCATATCATA
4807433 TATAT-ATAT-ATA
1 TATATCATATCATA
*
4807445 TAT-TACATATCACA
1 TATAT-CATATCATA
4807459 TAT
1 TAT
4807462 CTTTGTCATG
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
11 1 0.02
12 10 0.19
13 8 0.15
14 10 0.19
15 24 0.45
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATCATATCATA
Found at i:4807446 original size:10 final size:10
Alignment explanation
Indices: 4807390--4807447 Score: 53
Period size: 12 Copynumber: 5.1 Consensus size: 10
4807380 TAACCTTTCC
4807390 TATATCATATCA
1 TATAT-ATAT-A
4807402 TATCATATCATA
1 TAT-ATAT-ATA
4807414 TCATATCATATCA
1 T-ATAT-ATAT-A
4807427 TATATATATA
1 TATATATATA
4807437 TATATATATA
1 TATATATATA
4807447 T
1 T
4807448 TACATATCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
10 12 0.29
11 4 0.10
12 15 0.37
13 10 0.24
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (10 bp):
TATATATATA
Found at i:4817562 original size:22 final size:22
Alignment explanation
Indices: 4817537--4817578 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4817527 GGATTTCATG
4817537 TATTAAAAATTAATTTTAAATT
1 TATTAAAAATTAATTTTAAATT
* *
4817559 TATTAAATATTATTTTTAAA
1 TATTAAAAATTAATTTTAAA
4817579 AATAATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAAAAATTAATTTTAAATT
Found at i:4817610 original size:36 final size:35
Alignment explanation
Indices: 4817539--4817610 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
4817529 ATTTCATGTA
* *
4817539 TTAAAAATTAATTTTAAATTTATTAAATATTATTT
1 TTAAAAATTAATTTTAAATTAATTAAATATAATTT
*
4817574 TTAAAAA-TAATTATATAAATTAATTAAAT-TAAATT
1 TTAAAAATTAATT-T-TAAATTAATTAAATATAATTT
4817609 TT
1 TT
4817611 GAATTCATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 5 0.16
35 14 0.44
36 13 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (35 bp):
TTAAAAATTAATTTTAAATTAATTAAATATAATTT
Found at i:4823781 original size:2 final size:2
Alignment explanation
Indices: 4823774--4823807 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4823764 AGAAAACTAG
4823774 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4823808 ACAAACACGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4826179 original size:15 final size:15
Alignment explanation
Indices: 4826159--4826196 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
4826149 AATGCATCCC
4826159 ACACTTATCCATGT-G
1 ACACTTAT-CATGTAG
4826174 ACACTTATCATGTAG
1 ACACTTATCATGTAG
*
4826189 ACCCTTAT
1 ACACTTAT
4826197 GAACTTCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (15 bp):
ACACTTATCATGTAG
Found at i:4828721 original size:6 final size:6
Alignment explanation
Indices: 4828708--4828756 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
4828698 TTAAAAAAAA
* * * * *
4828708 GCGTGT GTGTGT GTGTGT GTGCGC GCGTGT GCGTGT GCGTGT GCGTGT
1 GCGTGT GCGTGT GCGTGT GCGTGT GCGTGT GCGTGT GCGTGT GCGTGT
4828756 G
1 G
4828757 TAAGCTTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.14, G:0.51, T:0.35
Consensus pattern (6 bp):
GCGTGT
Found at i:4828965 original size:14 final size:14
Alignment explanation
Indices: 4828946--4828979 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
4828936 TACTTTTAAT
*
4828946 AAAAATCAAAAGAA
1 AAAAATCAAAAAAA
*
4828960 AAAAATTAAAAAAA
1 AAAAATCAAAAAAA
4828974 AAAAAT
1 AAAAAT
4828980 ACCAATCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (14 bp):
AAAAATCAAAAAAA
Found at i:4829976 original size:20 final size:21
Alignment explanation
Indices: 4829925--4829981 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
4829915 ATAAATTTAA
4829925 ATAAATGAACCCTAAACAAAT
1 ATAAATGAACCCTAAACAAAT
* * *
4829946 GTAAATAAACCC-AAACGAAT
1 ATAAATGAACCCTAAACAAAT
* *
4829966 ATAAACGAACCTTAAA
1 ATAAATGAACCCTAAA
4829982 ATAAAATTCG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.56, C:0.19, G:0.07, T:0.18
Consensus pattern (21 bp):
ATAAATGAACCCTAAACAAAT
Found at i:4834172 original size:29 final size:29
Alignment explanation
Indices: 4834135--4834193 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
4834125 TCCGAATAAT
*
4834135 TTATATTAAAAGATACAAACAATAATTGC
1 TTATATTAAAAGATACAAACAAGAATTGC
* *
4834164 TTATGTTAAAAGGTACAAACAAGAATTGC
1 TTATATTAAAAGATACAAACAAGAATTGC
4834193 T
1 T
4834194 CGTGTTAGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (29 bp):
TTATATTAAAAGATACAAACAAGAATTGC
Found at i:4834199 original size:29 final size:29
Alignment explanation
Indices: 4834140--4834200 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
4834130 ATAATTTATA
* *
4834140 TTAAAAGATACAAACAATAATTGCTTATG
1 TTAAAAGATACAAACAAGAATTGCTCATG
* *
4834169 TTAAAAGGTACAAACAAGAATTGCTCGTG
1 TTAAAAGATACAAACAAGAATTGCTCATG
4834198 TTA
1 TTA
4834201 GTCATTGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (29 bp):
TTAAAAGATACAAACAAGAATTGCTCATG
Found at i:4838830 original size:20 final size:21
Alignment explanation
Indices: 4838779--4838832 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
4838769 TAATTAAATT
* *
4838779 TATAATCAAGTATTATATTCA
1 TATAATAAATTATTATATTCA
*
4838800 TATAATTAATTATTATA-TCA
1 TATAATAAATTATTATATTCA
4838820 -ACTAATAAATTAT
1 TA-TAATAAATTAT
4838833 AATTTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 13 0.45
21 15 0.52
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAATAAATTATTATATTCA
Found at i:4839846 original size:27 final size:26
Alignment explanation
Indices: 4839806--4839866 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
4839796 TGTTTGATAT
*
4839806 ATAAGATTATAATATGA-TACGA-TAA
1 ATAATATTATAATATGATTA-GATTAA
4839831 GATAATATTATAAATATGATTAGATTAA
1 -ATAATATTAT-AATATGATTAGATTAA
4839859 ATAATATT
1 ATAATATT
4839867 GTTGTAACGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 9 0.29
27 17 0.55
28 5 0.16
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.38
Consensus pattern (26 bp):
ATAATATTATAATATGATTAGATTAA
Found at i:4840859 original size:206 final size:208
Alignment explanation
Indices: 4840510--4840884 Score: 442
Period size: 206 Copynumber: 1.8 Consensus size: 208
4840500 TTATTAAAAA
* * ** * *
4840510 AAAAGAAAATTTTTTATTATATTGAAGATGTTCTATAAATATTCCAATACACTGGTAATATTTTA
1 AAAAGAAAA-TTTTTATTATATTAAAAATGTTCTATAAATACCCCAATACACTGGTAAAATTTAA
* *
4840575 AAAAAATCTTCTCACCTAAAGATTTATTAAAGCATCTCTACTTGGAATACTTTTAAAATCCCATC
65 AAAAAATCTTCTCACCTAAAGATTTATTAAAGCATCACTACTCGGAATACTTTTAAAATCCCATC
* *
4840640 ATCGAATAAAATTTTTTTTC-T-CATTTTTTATTACTTATTCTTAATTTATTAATTAATTATTAT
130 ATCGAATAAAATTTTCTTTCATACATTTTTT-TTAATTATTCTTAATTTATTAATTAATTATTAT
4840703 TTACTATTTTATAAC
194 TTACTATTTTATAAC
* * * *
4840718 AAAAGAAAA-TTTTATTGTATTAAAAATTTTTTATAAATACCCCAATATACTGGTAAAATTTAAA
1 AAAAGAAAATTTTTATTATATTAAAAATGTTCTATAAATACCCCAATACACTGGTAAAATTT-AA
* * * * ** *
4840782 AAAAAATC-TCATCACCTAGAGATTTCA-T-AGGTATCACTACTCGGAGTA-TTTTTGAATCTCA
65 AAAAAATCTTC-TCACCTAAAGATTT-ATTAAAGCATCACTACTCGGAATACTTTTAAAATCCCA
4840843 TCATC-AGATAAAAATTTTCTTTCATACATTTTTTTTAATTAT
128 TCATCGA-AT-AAAATTTTCTTTCATACATTTTTTTTAATTAT
4840885 GTATTATTAT
Statistics
Matches: 139, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
204 1 0.01
205 17 0.12
206 72 0.52
207 31 0.22
208 18 0.13
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (208 bp):
AAAAGAAAATTTTTATTATATTAAAAATGTTCTATAAATACCCCAATACACTGGTAAAATTTAAA
AAAAATCTTCTCACCTAAAGATTTATTAAAGCATCACTACTCGGAATACTTTTAAAATCCCATCA
TCGAATAAAATTTTCTTTCATACATTTTTTTTAATTATTCTTAATTTATTAATTAATTATTATTT
ACTATTTTATAAC
Found at i:4841938 original size:29 final size:28
Alignment explanation
Indices: 4841905--4841999 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 28
4841895 AGGGCATAGA
4841905 GGTGAACAGAGATTGGTAATGTATGCAAG
1 GGTGAACAGAGA-TGGTAATGTATGCAAG
* * *
4841934 GGTGAACAGGGGATGGTAGTGTATGCAGG
1 GGTGAACA-GAGATGGTAATGTATGCAAG
*
4841963 GGTGAACAG-GA-GGTGACAGTGTATGCAGG
1 GGTGAACAGAGATGGT-A-A-TGTATGCAAG
4841992 GGTGAACA
1 GGTGAACA
4842000 AAGGGTGGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
26 3 0.05
27 3 0.05
28 1 0.02
29 48 0.83
30 3 0.05
ACGTcount: A:0.29, C:0.08, G:0.42, T:0.20
Consensus pattern (28 bp):
GGTGAACAGAGATGGTAATGTATGCAAG
Found at i:4842006 original size:29 final size:28
Alignment explanation
Indices: 4841924--4842012 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 28
4841914 AGATTGGTAA
* *
4841924 TGTATGCAAGGGTGAACAGGGGATGGTAG
1 TGTATGCAGGGGTGAACAGGGG-TGGCAG
*
4841953 TGTATGCAGGGGTGAACAGGAGGTGACAG
1 TGTATGCAGGGGTGAACAGG-GGTGGCAG
*
4841982 TGTATGCAGGGGTGAACAAAGGGTGGCAG
1 TGTATGCAGGGGTGAAC-AGGGGTGGCAG
4842011 TG
1 TG
4842013 GTGTCGTGCA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
29 49 0.92
30 4 0.08
ACGTcount: A:0.27, C:0.09, G:0.45, T:0.19
Consensus pattern (28 bp):
TGTATGCAGGGGTGAACAGGGGTGGCAG
Found at i:4842120 original size:24 final size:24
Alignment explanation
Indices: 4842084--4842130 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
4842074 ATTTTTTGTA
4842084 TTATTATTGTATTTAATA-ATATTT
1 TTATTATTGTA-TTAATATATATTT
4842108 TTATTATCT-TATTAATATATATT
1 TTATTAT-TGTATTAATATATATT
4842131 ATTTGATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 14 0.67
25 1 0.05
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATTATTGTATTAATATATATTT
Found at i:4842466 original size:49 final size:49
Alignment explanation
Indices: 4842359--4842721 Score: 291
Period size: 49 Copynumber: 7.4 Consensus size: 49
4842349 CCTCTTACTC
** * *
4842359 GAGGCTCAACAACTTTTGAAAAT-TTAAAATGTGAAAAATAACTTCTCTCAGTA
1 GAGGCTCAACAAC-TTT-AAAATCTT-ATCT-TGAAAAA-AACTTATCTCAGCA
*
4842412 AAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCA
1 GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCA
* * * *** ** *
4842461 GAGGCTCAATAACTTTAAAATTTTTCATCTAGAAAATGGCTCCTCTCAACA
1 GAGGCTCAACAACTTTAAAA-TCTT-ATCTTGAAAAAAACTTATCTCAGCA
* *
4842512 GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAGCTCATCTCAGCA
1 GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCA
* * *
4842561 G-GAGTTTAACAACTTTAAATATTTTCATC-TGAAAAAAGAGCTTATCTCAGCA
1 GAG-GCTCAACAACTTTAAA-ATCTT-ATCTTGAAAAAA-A-CTTATCTCAGCA
* * *
4842613 GATGCTCAACAA-TTTAAAATCTTATCTTGAAACAAA--TA----A-TA
1 GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCA
* * * *
4842654 GAGGCTCAACAACTTTAAATTCTTATTTTG-AAAAAAGTTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTT-ATCTCAGCA
4842703 GAGGCTCAACAACTTTAAA
1 GAGGCTCAACAACTTTAAA
4842722 TTAAACCATT
Statistics
Matches: 252, Mismatches: 39, Indels: 42
0.76 0.12 0.13
Matches are distributed among these distances:
41 17 0.07
42 16 0.06
43 1 0.00
46 2 0.01
48 2 0.01
49 89 0.35
50 36 0.14
51 53 0.21
52 24 0.10
53 12 0.05
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (49 bp):
GAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCA
Found at i:4842520 original size:100 final size:98
Alignment explanation
Indices: 4842403--4842721 Score: 343
Period size: 100 Copynumber: 3.3 Consensus size: 98
4842393 AAAATAACTT
* *
4842403 CTCTCAGTAAAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCAGAGGCTC
1 CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCAGAGGCTC
* *
4842468 AATAACTTTAAAATTTTTCATCTAGAAAATGGCTC
66 AACAACTTT-AAATTTTTCATCT-GAAAAAGGCTC
* * * *
4842503 CTCTCAACAGAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAGCTCATCTCAGCAG-GAGTT
1 CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCAGAG-GCT
* *
4842567 TAACAACTTTAAATATTTTCATCTGAAAAAAGAGCTT
65 CAACAACTTTAAAT-TTTTCATCTG-AAAAAG-GCTC
* * * *
4842604 ATCTCAGCAGATGCTCAACAA-TTTAAAATCTTATCTTGAAACAAA--TA----A-TAGAGGCTC
1 CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCAGAGGCTC
* * * *
4842661 AACAACTTTAAATTCTT-ATTTTGAAAAAAGTTC
66 AACAACTTTAAATTTTTCA-TCTGAAAAAGGCTC
4842694 CTCTCAGCAGAGGCTCAACAACTTTAAA
1 CTCTCAGCAGAGGCTCAACAACTTTAAA
4842722 TTAAACCATT
Statistics
Matches: 186, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
90 21 0.11
91 12 0.06
92 6 0.03
93 17 0.09
94 2 0.01
98 1 0.01
99 6 0.03
100 100 0.54
101 21 0.11
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (98 bp):
CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGAAAAAAACTTATCTCAGCAGAGGCTC
AACAACTTTAAATTTTTCATCTGAAAAAGGCTC
Found at i:4843043 original size:146 final size:146
Alignment explanation
Indices: 4842773--4843188 Score: 464
Period size: 146 Copynumber: 2.8 Consensus size: 146
4842763 GATAAATAAT
* * * *
4842773 CTCGGATATCACCACCAAAAAAATGCAAATAACTTCGGATATTGCCACTGAAGAAAACTCGAATA
1 CTCGGATATCACCACCAAAAAAATGCAAATAACTTCGGATATCGTCAC-AAAGAAAACTCAAATA
*
4842838 TCATCATCGAAAAAATATAATTCAAGCTTTAATACTCAGATATCACCATCGAAAAAATACAAATG
65 TCACCATCGAAAAAATATAATTCAAGCTTTAATACTCAGATATCACCATCGAAAAAATACAAATG
*
4842903 CAAATTTAAATTTTAAA
130 CAAATTTAAACTTTAAA
* * * ** **
4842920 CTCGGATATCACCACCGAGAATATGCAAATGTCTTCGGATATCGTCATCAAAGGGAACTCAAAT-
1 CTCGGATATCACCACCAAAAAAATGCAAATAACTTCGGATATCGTCA-CAAAGAAAACTCAAATA
* * *
4842984 TCACCATCGAGAAAATATAATTCAAGCTTTAATACTC-GAATATCACCA-CTGAGAGAATACAAA
65 TCACCATCGAAAAAATATAATTCAAGCTTTAATACTCAG-ATATCACCATC-GAAAAAATACAAA
*
4843047 TGCAAATTTAAACTTTAAG
128 TGCAAATTTAAACTTTAAA
* * * **
4843066 CTCGAATATCAGCACCAAAAAAATACAAATAACTTCGGATATCGTCACCAAA-ATAAACTTGAAT
1 CTCGGATATCACCACCAAAAAAATGCAAATAACTTCGGATATCGTCA-CAAAGA-AAACTCAAAT
* *
4843130 ATCACCATCGATAGAATACAAATGCAAATTCAAACTTTAA-ACTCAGATATCACCATCGA
64 ATCACCATCGA-A-AA-A-ATAT---AATTCAAGCTTTAATACTCAGATATCACCATCGA
4843189 GAAGATGCAA
Statistics
Matches: 222, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
145 2 0.01
146 122 0.55
147 61 0.27
148 1 0.00
149 2 0.01
150 1 0.00
151 3 0.01
153 15 0.07
154 15 0.07
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.25
Consensus pattern (146 bp):
CTCGGATATCACCACCAAAAAAATGCAAATAACTTCGGATATCGTCACAAAGAAAACTCAAATAT
CACCATCGAAAAAATATAATTCAAGCTTTAATACTCAGATATCACCATCGAAAAAATACAAATGC
AAATTTAAACTTTAAA
Found at i:4843206 original size:105 final size:105
Alignment explanation
Indices: 4843021--4843212 Score: 253
Period size: 105 Copynumber: 1.8 Consensus size: 105
4843011 TTTAATACTC
* * *
4843021 GAATATCACCACTGAGAGAATACAAATGCAAATTTAAACTTTAAGCTCGAATATCAGCACCAAAA
1 GAATATCACCACTGAGAGAATACAAATGCAAATTCAAACTTTAAACTCGAATATCACCACCAAAA
*
4843086 AAATACAAATAACTTCGGATATCGTCACCAAAATAAACTT
66 AAATACAAATAACTTCGAATATCGTCACCAAAATAAACTT
* * *
4843126 GAATATCACCA-TCGATAGAATACAAATGCAAATTCAAACTTTAAACTC-AGATATCACCATCGA
1 GAATATCACCACT-GAGAGAATACAAATGCAAATTCAAACTTTAAACTCGA-ATATCACCACCAA
* * * *
4843189 GAAGATGCAAATGACTTCGAATAT
64 AAAAATACAAATAACTTCGAATAT
4843213 TACCATAGAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
104 2 0.03
105 72 0.97
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.23
Consensus pattern (105 bp):
GAATATCACCACTGAGAGAATACAAATGCAAATTCAAACTTTAAACTCGAATATCACCACCAAAA
AAATACAAATAACTTCGAATATCGTCACCAAAATAAACTT
Found at i:4843229 original size:105 final size:104
Alignment explanation
Indices: 4843021--4843243 Score: 231
Period size: 105 Copynumber: 2.1 Consensus size: 104
4843011 TTTAATACTC
* * *
4843021 GAATATCACCA-CTGAGAGAATACAAATGCAAATTTAAACTTTAAGCTCGAATATCAGCACCAAA
1 GAATATCACCATCTGAGAGAATACAAATGCAAATTCAAACTTTAAACTCGAATATCACCACCAAA
* *
4843085 AAAATACAAATAACTTCGGATATCGTCACCAAAATAAACTT
66 AAAATACAAATAACTTCGAATATC-TCACCAAAAGAAAC-T
* * *
4843126 GAATATCACCATC-GATAGAATACAAATGCAAATTCAAACTTTAAACTC-AGATATCACCATCGA
1 GAATATCACCATCTGAGAGAATACAAATGCAAATTCAAACTTTAAACTCGA-ATATCACCACCAA
* * * *
4843189 GAAGATGCAAATGACTTCGAATAT-T-ACCATAGAAGGAAACT
65 AAAAATACAAATAACTTCGAATATCTCACCA-A-AA-GAAACT
*
4843230 CAAGTATCACCATC
1 GAA-TATCACCATC
4843244 AAAAAAATAT
Statistics
Matches: 99, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
102 4 0.04
103 2 0.02
104 6 0.06
105 86 0.87
106 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.23
Consensus pattern (104 bp):
GAATATCACCATCTGAGAGAATACAAATGCAAATTCAAACTTTAAACTCGAATATCACCACCAAA
AAAATACAAATAACTTCGAATATCTCACCAAAAGAAACT
Found at i:4843385 original size:90 final size:90
Alignment explanation
Indices: 4843264--4843431 Score: 232
Period size: 90 Copynumber: 1.9 Consensus size: 90
4843254 AATTCAAGCT
** * * *
4843264 TTAATACTTGGATATCATCATCGAGAAAATGTAAATGCAAATTTAAAATTTACACTCAGATATCA
1 TTAATACTCAGATATCACCATCGAGAAAATGTAAATGCAAATTCAAAATTTAAACTCAGATATCA
4843329 -CTACCGAGAAGATACCATTCAAATC
66 TC-ACCGAGAAGATACCATTCAAATC
* * *
4843354 TTAATACTCAGATATCACCA-CTGAGAGAATGTAAATGCAAATTCAAACTTTAAACTCGGATATC
1 TTAATACTCAGATATCACCATC-GAGAAAATGTAAATGCAAATTCAAAATTTAAACTCAGATATC
4843418 ATCACCGAGAAGAT
65 ATCACCGAGAAGAT
4843432 GTAAATATTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
89 1 0.01
90 66 0.97
91 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.27
Consensus pattern (90 bp):
TTAATACTCAGATATCACCATCGAGAAAATGTAAATGCAAATTCAAAATTTAAACTCAGATATCA
TCACCGAGAAGATACCATTCAAATC
Found at i:4843418 original size:48 final size:49
Alignment explanation
Indices: 4843345--4843437 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 49
4843335 AGAAGATACC
*
4843345 ATTCAAATCTTAATACTCAGATATCACCACTGAG-AGAATGTAAATGCAA
1 ATTCAAATCTTAATACTCAGATATCACCACCGAGAAG-ATGTAAATGCAA
* *
4843394 ATTCAAA-CTTTAA-ACTCGGATATCATCACCGAGAAGATGTAAAT
1 ATTCAAATC-TTAATACTCAGATATCACCACCGAGAAGATGTAAAT
4843438 ATTTTCGGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
48 26 0.67
49 13 0.33
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (49 bp):
ATTCAAATCTTAATACTCAGATATCACCACCGAGAAGATGTAAATGCAA
Found at i:4843583 original size:48 final size:49
Alignment explanation
Indices: 4843490--4843584 Score: 113
Period size: 48 Copynumber: 2.0 Consensus size: 49
4843480 AAGAAAATGT
* * * * *
4843490 AATTCAAGCTTTAATACTCGAATATCATCACCGAGAGAATGCAAATGCA
1 AATTCAAACTTTAATACTCGAATATCACCACCGAAAAAATACAAATGCA
*
4843539 AATTCAAACTTTAA-ACTCGTAA-ATCACCATCGAAAAAATACAAATG
1 AATTCAAACTTTAATACTCG-AATATCACCACCGAAAAAATACAAATG
4843585 ACTTTGGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
48 24 0.62
49 15 0.38
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.24
Consensus pattern (49 bp):
AATTCAAACTTTAATACTCGAATATCACCACCGAAAAAATACAAATGCA
Found at i:4843648 original size:105 final size:105
Alignment explanation
Indices: 4843505--4843787 Score: 325
Period size: 105 Copynumber: 2.8 Consensus size: 105
4843495 AAGCTTTAAT
* * *
4843505 ACTCGAATATCA-TCACCGAGAGAATGCAAATGCAAATTCAAACTTTAAACTCGTAA-ATCACCA
1 ACTCGAATATCACT-ATCGAAAGAATCCAAATGCAAATTCAAACTTTAAACTCG-AATATCACCA
* * * *
4843568 TCGAAAAAATACAAATGACTTTGGATATTGTCACTGAAGGAA
64 CCGAAAAAATACAAATGACTTTAGATATTGTCACCGAAAGAA
*
4843610 ACTCGAATGTCACTATCGAAAGAATCCAAATGCAAATTCAAACTTTAAACTCGAATATCACCACC
1 ACTCGAATATCACTATCGAAAGAATCCAAATGCAAATTCAAACTTTAAACTCGAATATCACCACC
* * *
4843675 GAGAAGATGCAAATGACTTTAGATATTGTCACCGAAAGAA
66 GAAAAAATACAAATGACTTTAGATATTGTCACCGAAAGAA
* * * *
4843715 ACTCGAATATCACCAT--AAA-AA---AAAT--ATAATTCAAGCTTTAATACTTGGATATCACCA
1 ACTCGAATATCACTATCGAAAGAATCCAAATGCA-AATTCAAACTTTAA-ACTCGAATATCACCA
4843772 CCGAAAAAATACAAAT
64 CCGAAAAAATACAAAT
4843788 ACAAATTCAA
Statistics
Matches: 155, Mismatches: 19, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
97 1 0.01
98 13 0.08
99 30 0.19
102 2 0.01
103 3 0.02
104 2 0.01
105 103 0.66
106 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (105 bp):
ACTCGAATATCACTATCGAAAGAATCCAAATGCAAATTCAAACTTTAAACTCGAATATCACCACC
GAAAAAATACAAATGACTTTAGATATTGTCACCGAAAGAA
Found at i:4843780 original size:42 final size:42
Alignment explanation
Indices: 4843715--4843956 Score: 139
Period size: 42 Copynumber: 5.6 Consensus size: 42
4843705 ACCGAAAGAA
* *** **
4843715 ACTCGAATATCACCATAAAAAAAATATAATTCAAGCTTTAAT
1 ACTCGGATATCACCACCGAAAAAATATAATTCAAAATTTAAT
*
4843757 ACTTGGATATCACCACCGAAAAAATACAAATACAAATTCAAAATTTAA-
1 ACTCGGATATCACCACCGAAAAAAT----AT---AATTCAAAATTTAAT
** * * * * * **
4843805 ACTTAGATATTAGCATCGAGAAGATGCAATTC-AAATCTTAAT
1 ACTCGGATATCACCACCGAAAAAATATAATTCAAAAT-TTAAT
* * * * * * *
4843847 ACTAGGATATCACCATCGAGAAAATGTAATTCAAACTTTGAC
1 ACTCGGATATCACCACCGAAAAAATATAATTCAAAATTTAAT
* **
4843889 ACTCGGATATCACCACCGAAAAGATGCAATT-AAAATCTTAAT
1 ACTCGGATATCACCACCGAAAAAATATAATTCAAAAT-TTAAT
*
4843931 ACTCGGATATCACCACTGAAAAAATA
1 ACTCGGATATCACCACCGAAAAAATA
4843957 CAAATGACTT
Statistics
Matches: 154, Mismatches: 35, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
40 4 0.03
41 13 0.08
42 101 0.66
43 3 0.02
46 2 0.01
48 19 0.12
49 12 0.08
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (42 bp):
ACTCGGATATCACCACCGAAAAAATATAATTCAAAATTTAAT
Found at i:4843802 original size:488 final size:485
Alignment explanation
Indices: 4842866--4843917 Score: 1318
Period size: 488 Copynumber: 2.2 Consensus size: 485
4842856 AATTCAAGCT
* * * *
4842866 TTAATACTCAGATATCACCATCGAAAAAATACAAATGCAAATTTAAATTTTAAACTCGGATATCA
1 TTAATACTCAGATATCACCAT-GAGAGAAT--AAATGCAAATTCAAACTTTAAACTCGGATATCA
* * ** ** *
4842931 CCACCGAGAATATGCAAATGTCTTCGGATATCGTCATCAAAGGGAACTCAAATTCACCATCGAGA
63 CCACCGAGAAGATGCAAATATCTTCGGATATCACCATCAAAGAAAACTCAAATTCACCATCAAGA
* *
4842996 AAATATAATTCAAGCTTTAATACTCGAATATCACCACTGAGAGAATACAAATGCAAATTTAAACT
128 AAATATAATTCAAGCTTTAATACTCGAATATCACCACCGAGAGAATACAAATGCAAATTCAAACT
* * * *
4843061 TTAAGCTCGAATATCAGCACCAAAAAAATACAAATAACTTCGGATATCGTCACCAAAATAAACTT
193 TTAAACTCGAATATCACCACCAAAAAAATACAAATAACTTCGGATATCGTCACCAAAAGAAACTC
* *
4843126 GAATATCACCATCGATAGAATACAAATGCAAATTCAAACTTTAAACTCAGATATCACCATCGAGA
258 GAATATCACCATCGAAAGAATACAAATGCAAATTCAAACTTTAAACTCAGATATCACCACCGAGA
* * * *
4843191 AGATGCAAATGACTTCGAATATTACCATAGAAGGAAACTCAAGTATCACCATCAAAAAAATATAA
323 AGATGCAAATGACTTAGAATATTACCACAGAAAGAAACTCAAGTATCACCATAAAAAAAATATAA
* * * ** * * *
4843256 TTCAAGCTTTAATACTTGGATATCATCATCGAGAAAATGTAAATGCAAATTTAAAATTTACACTC
388 TTCAAGCTTTAATACTTGGATATCACCACCGAAAAAATACAAATACAAATTCAAAATTTAAACTC
*
4843321 AGATATCA-CTACCGAGAAGATACCATTCAAATC
453 AGATATCAGC-ACCGAGAAGATACAATTCAAATC
4843354 TTAATACTCAGATATCACCACTGAGAGAATGTAAATGCAAATTCAAACTTTAAACTCGGATATCA
1 TTAATACTCAGATATCACCA-TGAGAGAA--TAAATGCAAATTCAAACTTTAAACTCGGATATCA
* * * * * *
4843419 TCACCGAGAAGATGTAAATATTTTCGGATATCACCATCGAAA-AAAATTC-TATATCATCATCAA
63 CCACCGAGAAGATGCAAATATCTTCGGATATCACCATC-AAAGAAAACTCAAAT-TCACCATCAA
* * *
4843482 GAAAATGTAATTCAAGCTTTAATACTCGAATATCATCACCGAGAGAATGCAAATGCAAATTCAAA
126 GAAAATATAATTCAAGCTTTAATACTCGAATATCACCACCGAGAGAATACAAATGCAAATTCAAA
* * * * * ** *
4843547 CTTTAAACTCGTAA-ATCACCATCGAAAAAATACAAATGACTTTGGATATTGTCACTGAAGGAAA
191 CTTTAAACTCG-AATATCACCACCAAAAAAATACAAATAACTTCGGATATCGTCACCAAAAGAAA
* * *
4843611 CTCGAATGTCACTATCGAAAGAATCCAAATGCAAATTCAAACTTTAAACTC-GAATATCACCACC
255 CTCGAATATCACCATCGAAAGAATACAAATGCAAATTCAAACTTTAAACTCAG-ATATCACCACC
** *
4843675 GAGAAGATGCAAATGACTTTAG-ATATTGTCACCGAAAGAAACTCGAA-TATCACCATAAAAAAA
319 GAGAAGATGCAAATGAC-TTAGAATATTACCACAGAAAGAAACTC-AAGTATCACCATAAAAAAA
4843738 ATATAATTCAAGCTTTAATACTTGGATATCACCACCGAAAAAATACAAATACAAATTCAAAATTT
382 ATATAATTCAAGCTTTAATACTTGGATATCACCACCGAAAAAATACAAATACAAATTCAAAATTT
* * * *
4843803 AAACTTAGATATTAGCATCGAGAAGATGCAATTCAAATC
447 AAACTCAGATATCAGCACCGAGAAGATACAATTCAAATC
* * *
4843842 TTAATACT-AGGATATCACCAT-CGAG-A-AAATG-TAATTCAAACTTTGACACTCGGATATCAC
1 TTAATACTCA-GATATCACCATGAGAGAATAAATGCAAATTCAAACTTT-AAACTCGGATATCAC
*
4843902 CACCGAAAAGATGCAA
64 CACCGAGAAGATGCAA
4843918 TTAAAATCTT
Statistics
Matches: 487, Mismatches: 65, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
481 12 0.02
482 32 0.07
485 1 0.00
486 3 0.01
487 5 0.01
488 421 0.86
489 12 0.02
490 1 0.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (485 bp):
TTAATACTCAGATATCACCATGAGAGAATAAATGCAAATTCAAACTTTAAACTCGGATATCACCA
CCGAGAAGATGCAAATATCTTCGGATATCACCATCAAAGAAAACTCAAATTCACCATCAAGAAAA
TATAATTCAAGCTTTAATACTCGAATATCACCACCGAGAGAATACAAATGCAAATTCAAACTTTA
AACTCGAATATCACCACCAAAAAAATACAAATAACTTCGGATATCGTCACCAAAAGAAACTCGAA
TATCACCATCGAAAGAATACAAATGCAAATTCAAACTTTAAACTCAGATATCACCACCGAGAAGA
TGCAAATGACTTAGAATATTACCACAGAAAGAAACTCAAGTATCACCATAAAAAAAATATAATTC
AAGCTTTAATACTTGGATATCACCACCGAAAAAATACAAATACAAATTCAAAATTTAAACTCAGA
TATCAGCACCGAGAAGATACAATTCAAATC
Found at i:4844400 original size:24 final size:24
Alignment explanation
Indices: 4844373--4844422 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
4844363 GGTGCAAACA
*
4844373 CAAATGTCTTTTCCTAAAACGATG
1 CAAATATCTTTTCCTAAAACGATG
* *
4844397 CAAATATCTTTTCTTAAAATGATG
1 CAAATATCTTTTCCTAAAACGATG
4844421 CA
1 CA
4844423 CATGAAATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (24 bp):
CAAATATCTTTTCCTAAAACGATG
Found at i:4844544 original size:27 final size:21
Alignment explanation
Indices: 4844492--4844544 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
4844482 ATAAGTTAAT
4844492 GATGCAAATGCAATGTCAAAA
1 GATGCAAATGCAATGTCAAAA
4844513 GATGCAAATGCAATGTCAAAA
1 GATGCAAATGCAATGTCAAAA
* *
4844534 GGTTCAAATGC
1 GATGCAAATGC
4844545 TTAAATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (21 bp):
GATGCAAATGCAATGTCAAAA
Found at i:4850229 original size:10 final size:10
Alignment explanation
Indices: 4850214--4850248 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
4850204 TTATTTAAAA
4850214 TTTTATTAAT
1 TTTTATTAAT
4850224 TTTTATTAAT
1 TTTTATTAAT
*
4850234 ATTTATTAAT
1 TTTTATTAAT
4850244 ATTTT
1 -TTTT
4850249 TATTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 19 0.86
11 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:4850912 original size:30 final size:30
Alignment explanation
Indices: 4850878--4850944 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
4850868 GTCTGGTAGC
* *
4850878 GTTCAGCGATTTGGGGTCAG-TCTGACTCGG
1 GTTCAGCGA-TTCGGGTCAGATCTGAATCGG
** *
4850908 GTTCAATGATTCGGGTCCGATCTGAATCGG
1 GTTCAGCGATTCGGGTCAGATCTGAATCGG
4850938 GTTCAGC
1 GTTCAGC
4850945 AGTTTGGTTC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.16, C:0.21, G:0.33, T:0.30
Consensus pattern (30 bp):
GTTCAGCGATTCGGGTCAGATCTGAATCGG
Found at i:4851759 original size:29 final size:29
Alignment explanation
Indices: 4851656--4851761 Score: 126
Period size: 30 Copynumber: 3.6 Consensus size: 29
4851646 AGGGGCACAG
* *
4851656 GGGTGAACAGAGATGTGGCAATGTATACAA
1 GGGTGAACAGAG-GGTGGCAATGTATGCAA
*
4851686 GGGTGAACATGTGGGTGGCAATGTATGCAA
1 GGGTGAACA-GAGGGTGGCAATGTATGCAA
*
4851716 GGGTGAACA-AGGGGTGACAATGTATGC-A
1 GGGTGAACAGA-GGGTGGCAATGTATGCAA
4851744 GAGGTGAACAGAGGGTGG
1 G-GGTGAACAGAGGGTGG
4851762 TAGTGGTGCC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
28 2 0.03
29 28 0.42
30 34 0.52
31 2 0.03
ACGTcount: A:0.31, C:0.09, G:0.41, T:0.19
Consensus pattern (29 bp):
GGGTGAACAGAGGGTGGCAATGTATGCAA
Found at i:4851863 original size:21 final size:21
Alignment explanation
Indices: 4851837--4851890 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
4851827 GTATTTTTTG
4851837 TATTATTATTGTAT-TTAATAA
1 TATTATTATT-TATCTTAATAA
*
4851858 TATTATTA-TTATCTTATTAA
1 TATTATTATTTATCTTAATAA
4851878 TATATATTATTTA
1 TAT-TATTATTTA
4851891 ATAGAACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 3 0.10
20 10 0.34
21 13 0.45
22 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTATTATTTATCTTAATAA
Found at i:4851869 original size:24 final size:24
Alignment explanation
Indices: 4851837--4851888 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
4851827 GTATTTTTTG
4851837 TATTATTAT-TGTATTTAATA-ATAT
1 TATTATTATCT-TA-TTAATATATAT
4851861 TATTATTATCTTATTAATATATAT
1 TATTATTATCTTATTAATATATAT
4851885 TATT
1 TATT
4851889 TAATAGAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 6 0.23
24 19 0.73
25 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
TATTATTATCTTATTAATATATAT
Found at i:4852619 original size:20 final size:20
Alignment explanation
Indices: 4852577--4852620 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4852567 TATTTATATA
* *
4852577 TATTTAATAAATAAATTTTT
1 TATTAAATAAATAAATTTAT
4852597 TATTAAATAATATAAA-TTAT
1 TATTAAATAA-ATAAATTTAT
4852617 TATT
1 TATT
4852621 TTAAATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATTAAATAAATAAATTTAT
Found at i:4852666 original size:28 final size:25
Alignment explanation
Indices: 4852601--4852698 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 25
4852591 ATTTTTTATT
*
4852601 AAATAATATAAAT-TATTATTT-TAA
1 AAATAATATTAATATA-TATTTATAA
* *
4852625 ATTAATTAAAATTAATATATTTTTATTGAA
1 A--AA-TAATATTAATATATATTTA-T-AA
*
4852655 AAATATATATTAATAGATATTTATAA
1 AAATA-ATATTAATATATATTTATAA
*
4852681 AAATAATATAAATATATA
1 AAATAATATTAATATATA
4852699 AGATAAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
24 1 0.02
25 11 0.19
26 9 0.16
27 15 0.26
28 18 0.31
29 1 0.02
30 3 0.05
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
AAATAATATTAATATATATTTATAA
Found at i:4852827 original size:6 final size:6
Alignment explanation
Indices: 4852816--4852848 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
4852806 AAATATTCAT
*
4852816 TAAATA TAAATA TAAAAA TAAATA T-AATA TAAA
1 TAAATA TAAATA TAAATA TAAATA TAAATA TAAA
4852849 AATTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
TAAATA
Found at i:4852837 original size:18 final size:17
Alignment explanation
Indices: 4852816--4852870 Score: 65
Period size: 17 Copynumber: 3.0 Consensus size: 17
4852806 AAATATTCAT
4852816 TAAATATAAATATAAAAA
1 TAAATAT-AATATAAAAA
4852834 TAAATATAATATAAAAA
1 TAAATATAATATAAAAA
*
4852851 TTTAAAAATAATGATAAAAA
1 --TAAATATAAT-ATAAAAA
4852871 ATATTCTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 10 0.30
18 7 0.21
19 9 0.27
20 7 0.21
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAATATAATATAAAAA
Found at i:4861368 original size:28 final size:25
Alignment explanation
Indices: 4861324--4861375 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
4861314 ACACATTTTG
*
4861324 CAAAGAAGAAAAAAAATTTGCAAAT
1 CAAAGAAGAAAAAAAATTAGCAAAT
4861349 CAAAGAAGAAGTAAAGAAATTAGCAAA
1 CAAAGAAGAA--AAA-AAATTAGCAAA
4861376 CATTAAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
27 3 0.13
28 10 0.43
ACGTcount: A:0.63, C:0.08, G:0.15, T:0.13
Consensus pattern (25 bp):
CAAAGAAGAAAAAAAATTAGCAAAT
Found at i:4862198 original size:11 final size:11
Alignment explanation
Indices: 4862182--4862209 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4862172 AAAAAATAAA
4862182 AAATAAGAGAT
1 AAATAAGAGAT
4862193 AAATAAGAGAT
1 AAATAAGAGAT
4862204 AAATAA
1 AAATAA
4862210 CAAAAAGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (11 bp):
AAATAAGAGAT
Found at i:4864441 original size:3 final size:3
Alignment explanation
Indices: 4864433--4864480 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
4864423 AATTCAAAGG
4864433 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
4864479 TA
1 TA
4864481 CAATCATTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:4864805 original size:24 final size:23
Alignment explanation
Indices: 4864776--4864828 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
4864766 ATCTTATTTC
4864776 TTTTTTTTTA-ATCTTTAAAACTA
1 TTTTTTTTTATAT-TTTAAAACTA
*
4864799 TTATTTTTTTATATTTTAAAATTA
1 TT-TTTTTTTATATTTTAAAACTA
4864823 TTTTTT
1 TTTTTT
4864829 ATGATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 6 0.22
24 19 0.70
25 2 0.07
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTTTTTTATATTTTAAAACTA
Found at i:4864806 original size:23 final size:21
Alignment explanation
Indices: 4864779--4864829 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
4864769 TTATTTCTTT
*
4864779 TTTTTTAATCTTTAAAACTATTA
1 TTTTTTAATATTTAAAA--ATTA
* *
4864802 TTTTTTTATATTTTAAAATTA
1 TTTTTTAATATTTAAAAATTA
4864823 TTTTTTA
1 TTTTTTA
4864830 TGATTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 10 0.42
23 14 0.58
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTTAATATTTAAAAATTA
Found at i:4865138 original size:3 final size:3
Alignment explanation
Indices: 4865130--4865177 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
4865120 ATATAATGAA
4865130 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4865178 GAGTAATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4866550 original size:16 final size:16
Alignment explanation
Indices: 4866529--4866567 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
4866519 AACAATGATA
4866529 CGCCACCTAAGTTAAC
1 CGCCACCTAAGTTAAC
4866545 CGCCACCTAAGTTAAC
1 CGCCACCTAAGTTAAC
4866561 CGCCACC
1 CGCCACC
4866568 CCTTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.28, C:0.44, G:0.13, T:0.15
Consensus pattern (16 bp):
CGCCACCTAAGTTAAC
Found at i:4869209 original size:4 final size:4
Alignment explanation
Indices: 4869200--4869230 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
4869190 GAATAGGCTT
4869200 TTTG TTTG TTTG TTTG TTTG TTTG TTT- TTTG
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG
4869231 GGTTTTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:4872959 original size:14 final size:14
Alignment explanation
Indices: 4872942--4872980 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
4872932 TAAGTTTTTC
4872942 TTTTTTTATTTTAT
1 TTTTTTTATTTTAT
4872956 TTTTATTT-TTTTAT
1 TTTT-TTTATTTTAT
*
4872970 TTTTGTTATTT
1 TTTTTTTATTT
4872981 GTTTAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 2 0.09
14 17 0.77
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.85
Consensus pattern (14 bp):
TTTTTTTATTTTAT
Found at i:4872964 original size:19 final size:19
Alignment explanation
Indices: 4872936--4872972 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4872926 CATTTGTAAG
*
4872936 TTTTTCTTTTTTTATTTTA
1 TTTTTATTTTTTTATTTTA
4872955 TTTTTATTTTTTTATTTT
1 TTTTTATTTTTTTATTTT
4872973 TGTTATTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTATTTTTTTATTTTA
Found at i:4873210 original size:3 final size:3
Alignment explanation
Indices: 4873202--4873251 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
4873192 TTTTTGCTAA
4873202 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4873250 AA
1 AA
4873252 CTATTTAAGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4882964 original size:4 final size:4
Alignment explanation
Indices: 4882955--4883071 Score: 59
Period size: 4 Copynumber: 29.2 Consensus size: 4
4882945 ATGTTTATTG
* * * **
4882955 TTTA TTTA TTTA TGTA TTT- TTTA TTTT TTTG GGT- TTTA TCTT- TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
* *
4883000 TTTA -TTA TTTA TTTA TTTA -TTA TGTTG TTTA TCTCAGA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA T-T--TA TTTA TTTA
4883045 TTTA TTTTA TTTTA TTTA TTTA TTTA T
1 TTTA -TTTA -TTTA TTTA TTTA TTTA T
4883072 CTTTAGATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
3 18 0.20
4 53 0.60
5 15 0.17
6 1 0.01
7 2 0.02
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:4882977 original size:26 final size:25
Alignment explanation
Indices: 4882948--4883073 Score: 73
Period size: 26 Copynumber: 4.8 Consensus size: 25
4882938 TTATTTTATG
*
4882948 TTTATTGTTTATTTATTTATGTATTT
1 TTTATT-TTTATTTATTTATCTATTT
*
4882974 TTTATTTTT-TTGGGT-TTTATCTTTTT
1 TTTATTTTTATT---TATTTATCTATTT
4883000 TTTATTATTTATTTATTTAT-TATGTT
1 TTTATT-TTTATTTATTTATCTAT-TT
*** *
4883026 GTTTATCTCAGATTT-TTTATTTATTT
1 -TTTAT-TTTTATTTATTTATCTATTT
4883052 TATT-TTATTTATTTATTTATCT
1 T-TTATT-TTTATTTATTTATCT
4883074 TTAGATTTGG
Statistics
Matches: 77, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
24 3 0.04
25 12 0.16
26 43 0.56
27 16 0.21
28 3 0.04
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.72
Consensus pattern (25 bp):
TTTATTTTTATTTATTTATCTATTT
Found at i:4883057 original size:14 final size:13
Alignment explanation
Indices: 4883040--4883069 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
4883030 ATCTCAGATT
4883040 TTTTATTTATTTTA
1 TTTTATTTA-TTTA
4883054 TTTTATTTATTTA
1 TTTTATTTATTTA
4883067 TTT
1 TTT
4883070 ATCTTTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:4883471 original size:19 final size:19
Alignment explanation
Indices: 4883449--4883485 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4883439 ATTTTGATGG
4883449 AATTTTTC-AGTGACTTTTA
1 AATTTTTCGA-TGACTTTTA
4883468 AATTTTTCGATGACTTTT
1 AATTTTTCGATGACTTTT
4883486 CGGCGAGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.54
Consensus pattern (19 bp):
AATTTTTCGATGACTTTTA
Found at i:4888151 original size:204 final size:204
Alignment explanation
Indices: 4887744--4888395 Score: 751
Period size: 204 Copynumber: 3.2 Consensus size: 204
4887734 CCATTGACTC
* * ** * *
4887744 TCAGATTTTTAATTTAAAATTTTATTACCTCTAATCAGAGGAGGTTTCTTTAACGTATCATAGCC
1 TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCAGAGGAAATTTCTTTAAAGTGTCATAGCC
* * * * * * *
4887809 TTTAGTTAGAATAGCTC-TTTTCAAAGTTTCATAGCCTTTAGTCAAATGAGTTTTTTTTTTTTAT
66 -TTCGGTAGAAGAGCTCTTTTTCAAAGTTTCATAGCCTTTGGTCAAAAGAG----CTTTTTTAAT
* ** *
4887873 TTTAAGAGCCTTTGGTTAGAGGACTCCATCAAAATTAGGCATGATTTGTAAGACCAAAGGGCATT
126 TTTAAGAGCCTTTGGTTAGAGGACTTCATCAAAATTAGGCATGATTTGTAAGACCAAAATGCATA
4887938 ATCTATAAGTCCTT
191 ATCTATAAGTCCTT
* * * * *
4887952 TCAAATTTTTAATTTAAAGTTTCATTACCTCTGGTCAGAGGAATTTTCTTTAAAGTGTTATAGCC
1 TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCAGAGGAAATTTCTTTAAAGTGTCATAGCC
* * * * *
4888017 TTCGGTAGAAGATCTCTTTTTCAAAGTTTTATAACCTTTGGTCATAGGAGCTTTTTTAATTTTAA
66 TTCGGTAGAAGAGCTCTTTTTCAAAGTTTCATAGCCTTTGGTCAAAAGAGCTTTTTTAATTTTAA
* ** * *
4888082 GAGCCTCTAATTAGAGGACTTCATCAAAATTAGGCATGATTTGTAAGACCAAAATACATAATATA
131 GAGCCTTTGGTTAGAGGACTTCATCAAAATTAGGCATGATTTGTAAGACCAAAATGCATAATCTA
4888147 TAAGTCCTT
196 TAAGTCCTT
* **
4888156 TCAGATTTTTAATTTAAAGTTTCATTACCTCTAGTCA-AAAAAGATTTCTTTAAAGTGTCATAGC
1 TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCAGAGGAA-ATTTCTTTAAAGTGTCATAGC
* * * *
4888220 C-CCTGGTTAG-AGAAGCT-TTTTTCAAAGTTTCATAGCCTCTGGTCAGAAGAGCATTTTTAA-T
65 CTTC-GG-TAGAAG-AGCTCTTTTTCAAAGTTTCATAGCCTTTGGTCAAAAGAGCTTTTTTAATT
* ** **
4888281 TTAAAAGCCTTTGGTTAGAAAACTTCATCAAAATTAAACATGATTTGTAAGACC-AAATGGCATA
127 TTAAGAGCCTTTGGTTAGAGGACTTCATCAAAATTAGGCATGATTTGTAAGACCAAAAT-GCATA
* *
4888345 ATCTATAAGACCTC
191 ATCTATAAGTCCTT
4888359 TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCA
1 TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCA
4888396 AAAGATTTTT
Statistics
Matches: 381, Mismatches: 57, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
202 4 0.01
203 102 0.27
204 174 0.46
205 6 0.02
207 12 0.03
208 83 0.22
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (204 bp):
TCAGATTTTTAATTTAAAATTTCATTACCTCTAGTCAGAGGAAATTTCTTTAAAGTGTCATAGCC
TTCGGTAGAAGAGCTCTTTTTCAAAGTTTCATAGCCTTTGGTCAAAAGAGCTTTTTTAATTTTAA
GAGCCTTTGGTTAGAGGACTTCATCAAAATTAGGCATGATTTGTAAGACCAAAATGCATAATCTA
TAAGTCCTT
Found at i:4888277 original size:36 final size:36
Alignment explanation
Indices: 4888171--4888277 Score: 94
Period size: 36 Copynumber: 3.0 Consensus size: 36
4888161 TTTTTAATTT
* * * *
4888171 AAAGTTTCATTA-CCTCTAGTCAAAAAAG-ATTTCTTT
1 AAAGTTTCA-TAGCCTCTGGTCAGAAGAGCATTT-TTC
* * * *
4888207 AAAGTGTCATAGCCCCTGGTTAG-AGAAGCTTTTTTC
1 AAAGTTTCATAGCCTCTGGTCAGAAG-AGCATTTTTC
4888243 AAAGTTTCATAGCCTCTGGTCAGAAGAGCATTTTT
1 AAAGTTTCATAGCCTCTGGTCAGAAGAGCATTTTT
4888278 AATTTAAAAG
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
35 3 0.05
36 47 0.85
37 5 0.09
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (36 bp):
AAAGTTTCATAGCCTCTGGTCAGAAGAGCATTTTTC
Found at i:4888504 original size:40 final size:40
Alignment explanation
Indices: 4888438--4888649 Score: 216
Period size: 40 Copynumber: 5.3 Consensus size: 40
4888428 ACCTCTAGCT
* * *
4888438 ATTTAAAGTTTCATTGTCTCTAGTCAAAGGAGCTTTTTAA
1 ATTTAAAGTTTCATTGCCTCTAGTCAAAAGAGCCTTTTAA
* * *
4888478 ATTTAAAGTTTTATTGCCTCTGGTCAAAAAAGCCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTAGTCAAAAGAGCCTTTTAA
* * *
4888518 ATTTAAAATTTCATTGTCTCAAGTCAGACAA-A-CCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTAGTCA-A-AAGAGCCTTTTAA
* *
4888558 ATTTTAAAGTTTCATT-TCTTTAGTCAAAAGAGCCTTTTAA
1 A-TTTAAAGTTTCATTGCCTCTAGTCAAAAGAGCCTTTTAA
* * *
4888598 ATTCTAAAGTTT-ATTGCCTCTGGTCAGAGGAGCCTTTTGAA
1 ATT-TAAAGTTTCATTGCCTCTAGTCAAAAGAGCCTTTT-AA
*
4888639 TTTTAAAGTTT
1 ATTTAAAGTTT
4888650 TATAGCCTTT
Statistics
Matches: 144, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 7 0.05
40 114 0.79
41 19 0.13
42 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (40 bp):
ATTTAAAGTTTCATTGCCTCTAGTCAAAAGAGCCTTTTAA
Found at i:4888584 original size:80 final size:81
Alignment explanation
Indices: 4888438--4888649 Score: 259
Period size: 80 Copynumber: 2.6 Consensus size: 81
4888428 ACCTCTAGCT
* * * *
4888438 ATTTAAAGTTTCATTGTCTCTAGTCAAAGGAGCTTTTTAAA-TTTAAAGTTTTATTGCCTCTGGT
1 ATTTAAAGTTTCATTGTCTCTAGTCAGAGGAGCCTTTTAAATTTTAAAGTTTCATTGCCTCTAGT
4888502 CAAAAAAGCCTTTTAA
66 CAAAAAAGCCTTTTAA
* * ** * * *
4888518 ATTTAAAATTTCATTGTCTCAAGTCAGACAAACCTTTTAAATTTTAAAGTTTCATT-TCTTTAGT
1 ATTTAAAGTTTCATTGTCTCTAGTCAGAGGAGCCTTTTAAATTTTAAAGTTTCATTGCCTCTAGT
*
4888582 CAAAAGAGCCTTTTAA
66 CAAAAAAGCCTTTTAA
* * *
4888598 ATTCTAAAGTTT-ATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTTAAAGTTT
1 ATT-TAAAGTTTCATTGTCTCTAGTCAGAGGAGCCTTTTAAATTTTAAAGTTT
4888650 TATAGCCTTT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 90 0.82
81 20 0.18
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (81 bp):
ATTTAAAGTTTCATTGTCTCTAGTCAGAGGAGCCTTTTAAATTTTAAAGTTTCATTGCCTCTAGT
CAAAAAAGCCTTTTAA
Found at i:4888666 original size:41 final size:40
Alignment explanation
Indices: 4888587--4888677 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
4888577 TTAGTCAAAA
* *
4888587 GAGCCTTTTAAATTCTAAAGTTTATTGCCTCTGGTCAGAG
1 GAGCCTTTTAAATTCTAAAGTTTATAGCCTCTGATCAGAG
* * * *
4888627 GAGCCTTTTGAATTTTAAAGTTTTATAGCCTTTGATCAGAT
1 GAGCCTTTTAAATTCTAAAG-TTTATAGCCTCTGATCAGAG
4888668 GAGCTCTTTT
1 GAGC-CTTTT
4888678 CAAAGTTTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 18 0.42
41 20 0.47
42 5 0.12
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (40 bp):
GAGCCTTTTAAATTCTAAAGTTTATAGCCTCTGATCAGAG
Found at i:4888759 original size:42 final size:41
Alignment explanation
Indices: 4888674--4888809 Score: 139
Period size: 42 Copynumber: 3.2 Consensus size: 41
4888664 AGATGAGCTC
* * *
4888674 TTTTC-AAAGTTTCATAGCCTTCGCTCAGAAAAGCCTTTCAAA
1 TTTTCAAAAGTTTCA-AGCCTTTGCTTAGAGAAG-CTTTCAAA
* *
4888716 TTTTCAAAAGTTGTCAAGCCTTTGCTTAGAGGAGCTTTTAAA
1 TTTTCAAAAGTT-TCAAGCCTTTGCTTAGAGAAGCTTTCAAA
* * * *
4888758 TTTTCAAAAGTTATCAAACCTCTACTTAGAGAAGCATTCCAAA
1 TTTTCAAAAGTT-TCAAGCCTTTGCTTAGAGAAGC-TTTCAAA
4888801 TTTTCAAAA
1 TTTTCAAAA
4888810 ATAAAAAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
42 42 0.53
43 34 0.43
44 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (41 bp):
TTTTCAAAAGTTTCAAGCCTTTGCTTAGAGAAGCTTTCAAA
Found at i:4889838 original size:17 final size:16
Alignment explanation
Indices: 4889803--4889855 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
4889793 TGTAAGTTTA
* *
4889803 TTTTATTTTATTTTTAT
1 TTTTATTTGA-TTTAAT
4889820 TTTTATTTGATTTGAAT
1 TTTTATTTGATTT-AAT
*
4889837 TTTGATTTG-TTTAAT
1 TTTTATTTGATTTAAT
4889852 TTTT
1 TTTT
4889856 TTTTTACAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 6 0.19
16 6 0.19
17 19 0.61
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTTATTTGATTTAAT
Found at i:4889959 original size:19 final size:19
Alignment explanation
Indices: 4889920--4889959 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
4889910 AATTATCAAC
*
4889920 AACAATAAAAAAAAAGTAA
1 AACAATAAAAAAAAAGCAA
4889939 AACAATAAAAAATAAA-CAA
1 AACAATAAAAAA-AAAGCAA
4889958 AA
1 AA
4889960 ATTAAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (19 bp):
AACAATAAAAAAAAAGCAA
Found at i:4890177 original size:3 final size:3
Alignment explanation
Indices: 4890169--4890213 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
4890159 TGCTAAAAAG
*
4890169 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAA AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
4890214 TGAAAACTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:4890878 original size:3 final size:3
Alignment explanation
Indices: 4890870--4890901 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4890860 AAAAGATGAA
4890870 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4890902 ATCAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4891040 original size:5 final size:5
Alignment explanation
Indices: 4891030--4891179 Score: 116
Period size: 5 Copynumber: 30.2 Consensus size: 5
4891020 GTTATCATAC
*
4891030 TATAT TATAT TATAT CATAT TAT-T T-TAT TATAT TATAT TATTAT TACTAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TA-TAT
* * * *
4891080 TGTA- T-TAT TATAT TATAG TATAT TATA- T-TAG TATAT TACAT TACTACT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TA-T
* * * *
4891128 GT-TAT TATTAT TATAT CAAAT TATAT TATAT TATAC TATAC TATAT TATAT
1 -TATAT TA-TAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
4891179 T
1 T
4891180 TTTTTTCTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
3 5 0.04
4 9 0.08
5 85 0.72
6 17 0.14
7 1 0.01
8 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:4891111 original size:13 final size:13
Alignment explanation
Indices: 4891030--4891122 Score: 75
Period size: 13 Copynumber: 6.9 Consensus size: 13
4891020 GTTATCATAC
*
4891030 TATATTATATTATA
1 TATATTATATTA-G
* *
4891044 TCATATTATTTTAT
1 T-ATATTATATTAG
4891058 TATATTATATTA-
1 TATATTATATTAG
4891070 T-TATTACTATT-G
1 TATATTA-TATTAG
4891082 TATTATTATATTATAG
1 TA-TATTATA-T-TAG
4891098 TATATTATATTAG
1 TATATTATATTAG
*
4891111 TATATTACATTA
1 TATATTATATTA
4891123 CTACTGTTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 17
0.76 0.05 0.19
Matches are distributed among these distances:
11 5 0.07
12 6 0.09
13 26 0.39
14 9 0.13
15 18 0.27
16 3 0.04
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (13 bp):
TATATTATATTAG
Found at i:4891114 original size:8 final size:8
Alignment explanation
Indices: 4891032--4891117 Score: 68
Period size: 8 Copynumber: 10.2 Consensus size: 8
4891022 TATCATACTA
4891032 TATTATAT
1 TATTATAT
4891040 TATATCATAT
1 TAT-T-ATAT
*
4891050 TATTTTATT
1 TATTATA-T
4891059 ATATTATAT
1 -TATTATAT
*
4891068 TATTATTAC
1 TATTA-TAT
*
4891077 TATTGTAT
1 TATTATAT
4891085 TATTATAT
1 TATTATAT
4891093 TA-TAGTA-
1 TATTA-TAT
4891100 TATTATAT
1 TATTATAT
*
4891108 TAGTATAT
1 TATTATAT
4891116 TA
1 TA
4891118 CATTACTACT
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
7 6 0.10
8 34 0.54
9 10 0.16
10 13 0.21
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:4892001 original size:5 final size:5
Alignment explanation
Indices: 4891993--4892047 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
4891983 TCTTTTTCAT
4891993 TTTTA TTTTA TTTT- TTATT- TCTTTA TTTTAA GTTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TT-TTA T-TTTA TTTT-A -TTTTA TTTTA TTTTA
4892040 TTTTA TTT
1 TTTTA TTT
4892048 GTTGGTTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
4 2 0.04
5 35 0.78
6 4 0.09
7 4 0.09
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:4892017 original size:20 final size:22
Alignment explanation
Indices: 4891994--4892047 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
4891984 CTTTTTCATT
4891994 TTTATTTTATTTTTTA-TTT-C
1 TTTATTTTATTTTTTATTTTAC
** *
4892014 TTTATTTTAAGTTTTATTTTAT
1 TTTATTTTATTTTTTATTTTAC
4892036 TTTATTTTATTT
1 TTTATTTTATTT
4892048 GTTGGTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 14 0.52
21 3 0.11
22 10 0.37
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTATTTTATTTTTTATTTTAC
Found at i:4892357 original size:155 final size:155
Alignment explanation
Indices: 4892180--4892636 Score: 736
Period size: 155 Copynumber: 2.9 Consensus size: 155
4892170 TTTAAAAGAC
*
4892180 AAATAAATAAATAAATCTTTTTCAAATAAAAATTCTTACAAAATAAATTCATGAATTCTACTAAA
1 AAATAAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTCATGAATTCTACTAAA
* * *
4892245 TTATTGAAGAATTTTCATGAATTCATTTTTTAAAATAGAATCCACCAAACTATTAAAAAATTTCA
66 CTATTGAAGAATTTTCATGGATTTATTTTTTAAAATAGAATCCACCAAACTATTAAAAAATTTCA
*
4892310 TAAATTATTTTTTAAAATAAATAAT
131 TAAATCATTTTTTAAAATAAATAAT
* *
4892335 AAATAAATAAATAAATATTTTTCAAATAAAAATCCTTACAAAATAAATTCATGAATTCTACCAAA
1 AAATAAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTCATGAATTCTACTAAA
* * * * *
4892400 CTATTGAAGAATTTTCATGGATTTATTTTTTAAAATGGAATCTATCAAACTATTAAGAAATTCCA
66 CTATTGAAGAATTTTCATGGATTTATTTTTTAAAATAGAATCCACCAAACTATTAAAAAATTTCA
*
4892465 TAAATCATTTTTTTAAATAAATAAT
131 TAAATCATTTTTTAAAATAAATAAT
* * *
4892490 AAACAAATAAATAGATCTTTTTCAAATAAAAATCCTTACAAAATAAATTTATGAATTCTACTAAA
1 AAATAAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTCATGAATTCTACTAAA
* *
4892555 CTATTGGAGAATTTTCATGGATTTA-TTTTTAAAATAGAATCCACCAAACTATTAGAAAATTTCA
66 CTATTGAAGAATTTTCATGGATTTATTTTTTAAAATAGAATCCACCAAACTATTAAAAAATTTCA
4892619 TAAATCATCTTTTTAAAA
131 TAAATCAT-TTTTTAAAA
4892637 AATTTTAAAA
Statistics
Matches: 275, Mismatches: 26, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
154 41 0.15
155 234 0.85
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (155 bp):
AAATAAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTCATGAATTCTACTAAA
CTATTGAAGAATTTTCATGGATTTATTTTTTAAAATAGAATCCACCAAACTATTAAAAAATTTCA
TAAATCATTTTTTAAAATAAATAAT
Found at i:4896875 original size:17 final size:16
Alignment explanation
Indices: 4896853--4896884 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
4896843 TTTTCTTAAC
4896853 AAATGAAAAAAGAAAAA
1 AAATGAAAAAA-AAAAA
4896870 AAATGAAAAAAAAAA
1 AAATGAAAAAAAAAA
4896885 TTGATGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.06
Consensus pattern (16 bp):
AAATGAAAAAAAAAAA
Found at i:4898143 original size:55 final size:54
Alignment explanation
Indices: 4897999--4898146 Score: 154
Period size: 55 Copynumber: 2.7 Consensus size: 54
4897989 TTCAATCTTG
* * *
4897999 ACTCAGTCTAGATCATTTTCTAGACTCACAACTTTGTCTCACTCATCCGATCTC
1 ACTCAGTCTAGATCATTTTCTTGACTCACAATTTTGTCTCAATCATCCGATCTC
* * * * * *
4898053 AGTTCAGTCCA-ATTCATTTTCATGACCCACAATTTTGTCTCAATCATTCGATTTCC
1 A-CTCAGTCTAGA-TCATTTTCTTGACTCACAATTTTGTCTCAATCATCCGATCT-C
* **
4898109 ACTCAGTCTAGATCATTTTTTTGACTCATGATTTTGTC
1 ACTCAGTCTAGATCATTTTCTTGACTCACAATTTTGTC
4898147 CCGGTTAGTC
Statistics
Matches: 74, Mismatches: 16, Indels: 7
0.76 0.16 0.07
Matches are distributed among these distances:
54 2 0.03
55 69 0.93
56 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (54 bp):
ACTCAGTCTAGATCATTTTCTTGACTCACAATTTTGTCTCAATCATCCGATCTC
Found at i:4898327 original size:119 final size:120
Alignment explanation
Indices: 4898109--4898382 Score: 318
Period size: 119 Copynumber: 2.3 Consensus size: 120
4898099 TTCGATTTCC
* ** * * *
4898109 ACTCAGTCTAGATCATTTTTTTGACTCATGATTTTGTCCCGGTTAGTCATCTTTGACCTCAACTC
1 ACTCAGTCTAGAT-ATTTTTTTGACTCGTGATTTCATCCCAGTCAGTAATCTTTGACCTCAACTC
** * *
4898174 CATCCTGGTCACTTTATCTTTTTGACTCACGATTTCATCTCGATTATTCAATCTTG
65 CATCCTAATCACTTTATCTTTTTGACTCACGATTTCATCTCGATCATTCAACCTTG
* *
4898230 ACTCAGTCTAGAT-TTTTTTTGACTCGTGATTTCATCCCAGTCAGTAATCTTTGACCTCGACTCG
1 ACTCAGTCTAGATATTTTTTTGACTCGTGATTTCATCCCAGTCAGTAATCTTTGACCTCAACTCC
* * * **
4898294 ATCTTAATCATTTTATC-TTTTGAACTCATGATTTTTTCTCGATCATTCAACCTTG
66 ATCCTAATCACTTTATCTTTTTG-ACTCACGATTTCATCTCGATCATTCAACCTTG
* * * *
4898349 ATTGAATCTAGATCATTTTTTTGACTCGTAATTT
1 ACTCAGTCTAGAT-ATTTTTTTGACTCGTGATTT
4898383 TATTTCGATC
Statistics
Matches: 129, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 5 0.04
119 93 0.72
121 31 0.24
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (120 bp):
ACTCAGTCTAGATATTTTTTTGACTCGTGATTTCATCCCAGTCAGTAATCTTTGACCTCAACTCC
ATCCTAATCACTTTATCTTTTTGACTCACGATTTCATCTCGATCATTCAACCTTG
Found at i:4898955 original size:16 final size:16
Alignment explanation
Indices: 4898942--4898974 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4898932 ATTATTTTGT
4898942 TATTATCATATTTTTA
1 TATTATCATATTTTTA
*
4898958 TATTATCATATTGTTA
1 TATTATCATATTTTTA
4898974 T
1 T
4898975 CATACTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
TATTATCATATTTTTA
Found at i:4898992 original size:5 final size:5
Alignment explanation
Indices: 4898982--4899131 Score: 87
Period size: 5 Copynumber: 30.2 Consensus size: 5
4898972 TATCATACTT
* * *
4898982 TATTA TATTA TATTG TATCA TA-T- TATTA TATTA TATAA TATTA TTATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA -TATTA
* * * * * *
4899031 GTATTG TA-T- TATTA TATTA TAGTC TATCA TA-T- TAGTA TATTA CATTA
1 -TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
* * * * *
4899078 CTACTA CTACTA TTATTA TATCA TATTA TATTG TATTA TATTA TACTA
1 -TATTA -TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA
4899126 TATTA T
1 TATTA T
4899132 GTTTTTTTAT
Statistics
Matches: 111, Mismatches: 26, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
3 6 0.05
4 4 0.04
5 79 0.71
6 22 0.20
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (5 bp):
TATTA
Found at i:4899008 original size:18 final size:18
Alignment explanation
Indices: 4898987--4899048 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
4898977 TACTTTATTA
*
4898987 TATTATATTGTATCATAT
1 TATTATATTGTATAATAT
*
4899005 TATTATATTATATAATAT
1 TATTATATTGTATAATAT
* **
4899023 TATTAT-TAGTATTGTAT
1 TATTATATTGTATAATAT
4899040 TATTATATT
1 TATTATATT
4899049 ATAGTCTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.36
18 23 0.64
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (18 bp):
TATTATATTGTATAATAT
Found at i:4899043 original size:35 final size:33
Alignment explanation
Indices: 4898986--4899051 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 33
4898976 ATACTTTATT
4898986 ATATTATATTGTATCATATTATTATATTATATA
1 ATATTATATTGTATCATATTATTATATTATATA
**
4899019 ATATTATTATTAGTATTGTATTATTATATTATA
1 ATATTA-TATT-GTATCATATTATTATATTATA
4899052 GTCTATCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 6 0.21
34 4 0.14
35 19 0.66
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (33 bp):
ATATTATATTGTATCATATTATTATATTATATA
Found at i:4899049 original size:58 final size:54
Alignment explanation
Indices: 4898981--4899131 Score: 149
Period size: 58 Copynumber: 2.6 Consensus size: 54
4898971 TTATCATACT
* * * *
4898981 TTATTATATTATATTGTATCATATTATTATATTATATAATATTATTATTAGTATTGTA
1 TTATTATATTATATTGTATCATATTATTATATTATAT--TACTACTACTACTA-T-TA
* * * *
4899039 TTATTATATTATAGTCTATCATATTAGTATATTACATTACTACTACTACTATTA
1 TTATTATATTATATTGTATCATATTATTATATTATATTACTACTACTACTATTA
*
4899093 TTATATCATATTATATTGTATTATATTATACTATATTAT
1 TTAT-T-ATATTATATTGTATCATATTAT--TATATTAT
4899132 GTTTTTTTAT
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
54 6 0.08
55 2 0.03
56 28 0.37
58 40 0.53
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (54 bp):
TTATTATATTATATTGTATCATATTATTATATTATATTACTACTACTACTATTA
Found at i:4899515 original size:21 final size:21
Alignment explanation
Indices: 4899491--4899539 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
4899481 TTTCTGAGAT
4899491 TTTGATTTTGAAAATTCTAGG
1 TTTGATTTTGAAAATTCTAGG
**
4899512 TTTGA-TTTGAAGTTTCTAGG
1 TTTGATTTTGAAAATTCTAGG
*
4899532 TTAGATTT
1 TTTGATTT
4899540 AGGTTTTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.24, C:0.04, G:0.20, T:0.51
Consensus pattern (21 bp):
TTTGATTTTGAAAATTCTAGG
Found at i:4899752 original size:49 final size:52
Alignment explanation
Indices: 4899699--4899803 Score: 117
Period size: 50 Copynumber: 2.1 Consensus size: 52
4899689 GGTGTTTGAA
* * * *
4899699 TTTTTCGAT-GAGATTTCGATGACTTTTTCATAAACCAATG-GTTTT-TCAG
1 TTTTTCGATGGACATTCCGATGACTTTTCCAAAAACCAATGAGTTTTCTCAG
* * * *
4899748 TTTTTGGTTGGACATTCCGGTGACTTTTCCAAAAACCACTGAGTTTTCTCAG
1 TTTTTCGATGGACATTCCGATGACTTTTCCAAAAACCAATGAGTTTTCTCAG
4899800 TTTT
1 TTTT
4899804 CAGTTAAATC
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
49 7 0.16
50 25 0.56
51 5 0.11
52 8 0.18
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTTTCGATGGACATTCCGATGACTTTTCCAAAAACCAATGAGTTTTCTCAG
Found at i:4900040 original size:12 final size:13
Alignment explanation
Indices: 4900025--4900053 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4900015 CCCTTTTTCA
4900025 TTTTC-ATTTTAT
1 TTTTCAATTTTAT
4900037 TTTTCAATTTTAT
1 TTTTCAATTTTAT
4900050 TTTT
1 TTTT
4900054 TTTATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCAATTTTAT
Found at i:4900041 original size:18 final size:17
Alignment explanation
Indices: 4900018--4900056 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
4900008 TAGGTTTCCC
4900018 TTTTTC-ATTTTCATTTT
1 TTTTTCAATTTT-ATTTT
4900035 ATTTTTCAATTTTATTTT
1 -TTTTTCAATTTTATTTT
4900053 TTTT
1 TTTT
4900057 ATTTCATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCAATTTTATTTT
Found at i:4900564 original size:15 final size:16
Alignment explanation
Indices: 4900526--4900564 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
4900516 AATAATAAAT
*
4900526 AAATAAATCTTTTTCA
1 AAATAAATCTTTTACA
*
4900542 AAAAAAATC-TTTACA
1 AAATAAATCTTTTACA
4900557 AAATAAAT
1 AAATAAAT
4900565 TTATAAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATAAATCTTTTACA
Found at i:4900593 original size:149 final size:151
Alignment explanation
Indices: 4900218--4900667 Score: 594
Period size: 146 Copynumber: 3.0 Consensus size: 151
4900208 TTTCAAAGAC
* *
4900218 AAATAAATAAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTTATGAATTCTAT
1 AAATAAATAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCTAC
* * * ** * * *
4900283 TAAACTATTGAAGAATTTTCATCAATTTATTTTTTAAATTGGAATCCACCCAACTATTGGAAAAT
66 CAAACTATTAAAGAATTTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTGAAAAAT
*
4900348 TTCATGAATAATTTTTT---T
131 TTCATAAATAATTTTTTAAAT
* *
4900366 AAATAAATAAATAAAT-AAT-TTTTTTAAATAAAAATCTTTACAAAATAAATTCATGAATTCTAC
1 AAATAAATAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCTAC
* * *
4900429 CAAACTATTAGAGAATTTTTATGGATTTATTTTTTAAAAGGGAAACCACCAAACTATTGAAAAAT
66 CAAACTATTAAAGAATTTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTGAAAAAT
*
4900494 TTCATAAATTATTTTTTAAAT
131 TTCATAAATAATTTTTTAAAT
*
4900515 AAAT-AATAAATAAATAAATCTTTTTCAAA-AAAAATCTTTACAAAATAAATTTATAAATTCTAC
1 AAATAAATAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCTAC
* * * * *
4900578 CAAACAATTAAAGAATTCTTATGGATTTATTTTTTAAAATAGAATCCACGAAACTATT-AGAAAT
66 CAAACTATTAAAGAATTTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTGA-AAAA
* *
4900642 TTTCAAAAATCATCTTTTTAAA-
130 TTTCATAAATAAT-TTTTTAAAT
4900664 AAAT
1 AAAT
4900668 TAGAAAATAA
Statistics
Matches: 265, Mismatches: 30, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
146 109 0.41
147 3 0.01
148 28 0.11
149 109 0.41
150 16 0.06
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (151 bp):
AAATAAATAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCTAC
CAAACTATTAAAGAATTTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTGAAAAAT
TTCATAAATAATTTTTTAAAT
Found at i:4900680 original size:149 final size:147
Alignment explanation
Indices: 4900218--4900677 Score: 567
Period size: 149 Copynumber: 3.1 Consensus size: 147
4900208 TTTCAAAGAC
*
4900218 AAATAAAT--AAATAAATAAATCTTTTTCAAATAAAAATCCTTACAAAATAAATTTATGAATTCT
1 AAATAAATAAAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCT
** * ** * *
4900281 ATTAAACTATTGAAGAATTTTCATCAATTTATTTTTTAAATTGGAATCCACCCAACTATTGGAAA
66 ACCAAACTATTAAAGAATTTT-ATGGATTTATTTTTTAAAATGGAATCCACCAAACTATT-GAAA
*
4900346 ATTTCATGAATAATTTTTTT
129 ATTTCATAAATAA-TTTTTT
* *
4900366 AAATAAAT--AAATAAAT-AAT-TTTTTTAAATAAAAATCTTTACAAAATAAATTCATGAATTCT
1 AAATAAATAAAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCT
* * *
4900427 ACCAAACTATTAGAGAATTTTTATGGATTTATTTTTTAAAAGGGAAACCACCAAACTATTGAAAA
66 ACCAAACTATTAAAGAA-TTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTG-AAA
*
4900492 ATTTCATAAATTATTTTTT
129 ATTTCATAAATAATTTTTT
*
4900511 AAATAAATAATAAATAAATAAATCTTTTTCAAA-AAAAATCTTTACAAAATAAATTTATAAATTC
1 AAATAAATAA-AAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTC
* * *
4900575 TACCAAACAATTAAAGAATTCTTATGGATTTATTTTTTAAAATAGAATCCACGAAACTATTAGAA
65 TACCAAACTATTAAAGAATT-TTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATT-GAA
* * *
4900640 ATTTTCAAAAATCATCTTTTT
128 AATTTCATAAATAAT-TTTTT
4900661 AAA-AAATTAGAAAATAA
1 AAATAAA-TA-AAAATAA
4900678 TAATTTTATC
Statistics
Matches: 273, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
145 15 0.05
146 98 0.36
147 7 0.03
148 26 0.10
149 101 0.37
150 25 0.09
151 1 0.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (147 bp):
AAATAAATAAAAATAAATAAATCTTTTTCAAATAAAAATCTTTACAAAATAAATTTATGAATTCT
ACCAAACTATTAAAGAATTTTATGGATTTATTTTTTAAAATGGAATCCACCAAACTATTGAAAAT
TTCATAAATAATTTTTT
Found at i:4902763 original size:5 final size:5
Alignment explanation
Indices: 4902753--4902781 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
4902743 AAAAATATAA
4902753 TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTAT
4902782 ATTTGACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:4903698 original size:13 final size:13
Alignment explanation
Indices: 4903662--4903699 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
4903652 GAATGGTTAA
4903662 TTTTTT-TAAAAT
1 TTTTTTATAAAAT
4903674 TTTTTTAAATAAAAT
1 TTTTTT--ATAAAAT
4903689 TTTTTTATAAA
1 TTTTTTATAAA
4903700 TTAGTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
15 12 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTTTATAAAAT
Found at i:4905117 original size:2 final size:2
Alignment explanation
Indices: 4905110--4905141 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4905100 ATACCGATAA
*
4905110 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4905142 GAAATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4905121 original size:10 final size:10
Alignment explanation
Indices: 4905106--4905138 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
4905096 TCTTATACCG
4905106 ATAAATATAT
1 ATAAATATAT
4905116 ATAAATATAT
1 ATAAATATAT
*
4905126 ATATATATAT
1 ATAAATATAT
4905136 ATA
1 ATA
4905139 TATGAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
ATAAATATAT
Found at i:4907620 original size:14 final size:13
Alignment explanation
Indices: 4907601--4907634 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
4907591 GGTTCTCCCA
4907601 TTCTCTTTCCTTTT
1 TTCTCTTT-CTTTT
4907615 TTCTC-TTCTTTT
1 TTCTCTTTCTTTT
4907627 TTCTCTTT
1 TTCTCTTT
4907635 TTGCATCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.53
13 4 0.21
14 5 0.26
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TTCTCTTTCTTTT
Found at i:4909914 original size:366 final size:367
Alignment explanation
Indices: 4909202--4909936 Score: 1356
Period size: 366 Copynumber: 2.0 Consensus size: 367
4909192 ATTCCAAACC
4909202 AAACAACACAATCAAATGGTGAAAACATTCCAAACCATGATGTACAAGGATTAGCATAGTTCACA
1 AAACAACACAATCAAATGGTGAAAACATTCCAAACCATGATGTACAAGGATTAGCATAGTTCACA
* *
4909267 CATAAAATTCTAGCTATATCATGTACTAATAGGTTAAAACATTATCAGAAACCACAAGATTAGTG
66 CATAAAATTCTAGCTATATCATGTACTAACAGATTAAAACATTATCAGAAACCACAAGATTAGTG
4909332 CAATAAAAGATCATCAACCAAGTTAAAAAATAAGACCCTTTTGTAAAAATTCTTGAAAGAGTTAA
131 CAATAAAAGATCATCAACCAAGTTAAAAAATAAGACCCTTTTGTAAAAATTCTTGAAAGAGTTAA
*
4909397 AATTGCAGATATGTAGATTTACACTAAAGTATGTCATGCACCTTTTCTTTGTTCAAAGAAAAGAA
196 AATTGCAGATATGCAGATTTACACTAAAGTATGTCATGCACCTTTTCTTTGTTCAAAGAAAAGAA
4909462 CATGAAGCAAAAATCATTTGAACTTCAAGACAAATGAATTCTGACTTGCTTATCAATTTTAACAA
261 CATGAAGCAAAAATCATTTGAACTTCAAGACAAATGAATTCTGACTTGCTTATCAATTTTAACAA
4909527 CTTATATACTAGTTAGATACCCATTTGCTATCTATTATTTAG
326 CTTATATACTAGTTAGATACCCATTTGCTATCTATTATTTAG
4909569 AAACAACACAATCAAATGGTGAAAACATTCCAAACCATGATGTACAAGGATTAGCATAGTTCACA
1 AAACAACACAATCAAATGGTGAAAACATTCCAAACCATGATGTACAAGGATTAGCATAGTTCACA
4909634 CATAAAATTCTAGCTATATCATGTA-TAAACAGATTAAAACATTATCAGAAACTCCACAAGATTA
66 CATAAAATTCTAGCTATATCATGTACT-AACAGATTAAAACATTATCAGAAA--CCACAAGATTA
4909698 GTGCAATAAAAGATCATCAACCCAAGTT-AAAAATAAGGACCCTTTTGT-AAAATTCTTG-AAGA
128 GTGCAATAAAAGATCATCAA-CCAAGTTAAAAAATAA-GACCCTTTTGTAAAAATTCTTGAAAGA
4909760 GTTAAAATTGCAGATATGCAGATTTACACTAAAGTATGTCATG-ACC-TTTCTTTGTTCAAAGAA
191 GTTAAAATTGCAGATATGCAGATTTACACTAAAGTATGTCATGCACCTTTTCTTTGTTCAAAGAA
4909823 AAGAACATGAAGCAAAAATCATTTGAACTTCAAGACAAATGAATTCTGACTTGCTTATCAATTTT
256 AAGAACATGAAGCAAAAATCATTTGAACTTCAAGACAAATGAATTCTGACTTGCTTATCAATTTT
4909888 AACAACTTATATACTAGTTAGATACCCATTTGCTATCTATTATTTAG
321 AACAACTTATATACTAGTTAGATACCCATTTGCTATCTATTATTTAG
4909935 AA
1 AA
4909937 GAACTTGATA
Statistics
Matches: 360, Mismatches: 3, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
366 132 0.37
367 115 0.32
368 46 0.13
369 49 0.14
370 18 0.05
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (367 bp):
AAACAACACAATCAAATGGTGAAAACATTCCAAACCATGATGTACAAGGATTAGCATAGTTCACA
CATAAAATTCTAGCTATATCATGTACTAACAGATTAAAACATTATCAGAAACCACAAGATTAGTG
CAATAAAAGATCATCAACCAAGTTAAAAAATAAGACCCTTTTGTAAAAATTCTTGAAAGAGTTAA
AATTGCAGATATGCAGATTTACACTAAAGTATGTCATGCACCTTTTCTTTGTTCAAAGAAAAGAA
CATGAAGCAAAAATCATTTGAACTTCAAGACAAATGAATTCTGACTTGCTTATCAATTTTAACAA
CTTATATACTAGTTAGATACCCATTTGCTATCTATTATTTAG
Found at i:4911602 original size:18 final size:19
Alignment explanation
Indices: 4911570--4911605 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4911560 GTAACTTTTT
4911570 TAATTAAATTAATATTAAA
1 TAATTAAATTAATATTAAA
*
4911589 TAATT-AATTCATATTAA
1 TAATTAAATTAATATTAA
4911606 CTGCATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATTAAATTAATATTAAA
Done.