Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 160 of 160
Found at i:32872547 original size:179 final size:179
Alignment explanation
Indices: 32872242--32872574 Score: 451
Period size: 179 Copynumber: 1.9 Consensus size: 179
32872232 TTTATACGAA
* * *
32872242 AAAAATTGATACATTCAACTTTTCCTCAAAAATGCTTTTTCTTTAACATTTTATTTTTAAGAAAA
1 AAAAATTGATACATTCAACTTTTCCTCAAAAATGATATTTCTTTAACATTTTATTTTCAAGAAAA
* *
32872307 ATTGATACTTTCAACCTTTCCTTAAAAATGTTTTCTGAAAATTTTATTTTCAAAGAAAATTGATA
66 ATTGATACTTTCAACCTTTCCTTAAAAATATTTTCTGAAAATTGTATTTTCAAAGAAAATTGATA
*
32872372 CTTTCAACTTTTTCTTAAAAATATTTTAAAAAAAAAATTTTTTCTCAAG
131 CTTTCAACTTTTCCTTAAAAATATTTTAAAAAAAAAATTTTTTCTCAAG
* *
32872421 AAAAATTGATACTTTCAACTTTTCCTTATAAATAT-ATATTT-TTT-A-ATTTTATTTTCAAGAA
1 AAAAATTGATACATTCAACTTTTCCTCA-AAA-ATGATATTTCTTTAACATTTTATTTTCAAGAA
* ** * * * *
32872482 AAATTGATGCTTTCAATTTTTTTCTTAAAAATATATTTTTTAAAATTGTATTTTTCAGA-AAAAT
64 AAATTGATACTTTCAA-CCTTTCCTTAAAAATAT-TTTCTGAAAATTGTA-TTTTCAAAGAAAAT
32872546 TGATACTTTCAACTTTTCCTTAAAAATAT
126 TGATACTTTCAACTTTTCCTTAAAAATAT
32872575 ATTGTTTAAA
Statistics
Matches: 134, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
177 30 0.22
178 14 0.10
179 74 0.55
180 14 0.10
181 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (179 bp):
AAAAATTGATACATTCAACTTTTCCTCAAAAATGATATTTCTTTAACATTTTATTTTCAAGAAAA
ATTGATACTTTCAACCTTTCCTTAAAAATATTTTCTGAAAATTGTATTTTCAAAGAAAATTGATA
CTTTCAACTTTTCCTTAAAAATATTTTAAAAAAAAAATTTTTTCTCAAG
Found at i:32873604 original size:9 final size:9
Alignment explanation
Indices: 32873586--32873614 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
32873576 CACATTCATC
32873586 TTTTTA-TT
1 TTTTTATTT
32873594 TTTTTATTT
1 TTTTTATTT
32873603 TTTTTATTT
1 TTTTTATTT
32873612 TTT
1 TTT
32873615 GAAAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTATTT
Found at i:32873699 original size:42 final size:42
Alignment explanation
Indices: 32873653--32873845 Score: 237
Period size: 42 Copynumber: 4.5 Consensus size: 42
32873643 GAGGCTCAAT
*
32873653 AACTTTGAAAAATAAAATGCTCTTCTAAGCAAAGGCAACCAC
1 AACTTTGAAAAATAAAATGCTCTTCTAAACAAAGGCAACCAC
* * * * *
32873695 AACTTGGAAAAATAAAATGTTCCTCTAAATAGAGGCAACCAC
1 AACTTTGAAAAATAAAATGCTCTTCTAAACAAAGGCAACCAC
* *
32873737 AATTTTGAAAAAAATAAAATGCTTCTT-TAAACAGAGGCAACCAC
1 AACTTTG--AAAAATAAAATGC-TCTTCTAAACAAAGGCAACCAC
* *
32873781 TACTTTGAAAAATAAAATGCT-TATCTAAACAAAGGCAACCAT
1 AACTTTGAAAAATAAAATGCTCT-TCTAAACAAAGGCAACCAC
32873823 AACTTTGAAAAAATAAAATGCTC
1 AACTTTG-AAAAATAAAATGCTC
32873846 ATTGACAATC
Statistics
Matches: 128, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 75 0.59
43 14 0.11
44 33 0.26
45 3 0.02
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.24
Consensus pattern (42 bp):
AACTTTGAAAAATAAAATGCTCTTCTAAACAAAGGCAACCAC
Found at i:32873775 original size:86 final size:86
Alignment explanation
Indices: 32873653--32873844 Score: 257
Period size: 86 Copynumber: 2.3 Consensus size: 86
32873643 GAGGCTCAAT
*
32873653 AACTTTG-AAAAATAAAATGC-TCTTCTAAGCAAAGGCAACCACAACTTGGAAAAATAAAATG-T
1 AACTTTGAAAAAATAAAATGCTTCTTCTAAACAAAGGCAACCACAACTTGGAAAAATAAAATGCT
* * *
32873715 TCCTCTAAATAGAGGCAACCAC
66 T-ATCTAAACAAAGGCAACCAC
* * * *
32873737 AATTTTGAAAAAAATAAAATGCTTCTT-TAAACAGAGGCAACCACTACTTTGAAAAATAAAATGC
1 AACTTTG-AAAAAATAAAATGCTTCTTCTAAACAAAGGCAACCACAACTTGGAAAAATAAAATGC
*
32873801 TTATCTAAACAAAGGCAACCAT
65 TTATCTAAACAAAGGCAACCAC
32873823 AACTTTGAAAAAATAAAATGCT
1 AACTTTGAAAAAATAAAATGCT
32873845 CATTGACAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
84 6 0.06
85 15 0.16
86 67 0.71
87 6 0.06
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.24
Consensus pattern (86 bp):
AACTTTGAAAAAATAAAATGCTTCTTCTAAACAAAGGCAACCACAACTTGGAAAAATAAAATGCT
TATCTAAACAAAGGCAACCAC
Found at i:32874018 original size:31 final size:31
Alignment explanation
Indices: 32873975--32874035 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
32873965 TTTACAAGAA
*
32873975 TTCACTGAAATTTGATTCT-CAAAATTTCAGT
1 TTCACTGAAATTTAATT-TACAAAATTTCAGT
*
32874006 TTCACT-AGAATTTAATTTATAAAATTTCAG
1 TTCACTGA-AATTTAATTTACAAAATTTCAG
32874036 ATGTGCAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (31 bp):
TTCACTGAAATTTAATTTACAAAATTTCAGT
Found at i:32874206 original size:22 final size:21
Alignment explanation
Indices: 32874181--32874242 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
32874171 AAATCTGAAG
*
32874181 GTTTCACATCTCAAAGATTCTC
1 GTTTCAAAT-TCAAAGATTCTC
* *
32874203 GTTTGAAATTCAAATATTCTC
1 GTTTCAAATTCAAAGATTCTC
* * *
32874224 ATTTGAAATTCAAAAATTC
1 GTTTCAAATTCAAAGATTC
32874243 GCATTTGAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 28 0.80
22 7 0.20
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (21 bp):
GTTTCAAATTCAAAGATTCTC
Found at i:32874221 original size:21 final size:20
Alignment explanation
Indices: 32874191--32874264 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 20
32874181 GTTTCACATC
*
32874191 TCAAAGATTCTCGTTTGAAAT
1 TCAAA-ATTCTCATTTGAAAT
32874212 TCAAATATTCTCATTTGAAAT
1 TCAAA-ATTCTCATTTGAAAT
* *
32874233 TCAAAAATTCGCATTTGAGAAC
1 TC-AAAATTCTCATTTGA-AAT
32874255 TCAAAATTCT
1 TCAAAATTCT
32874265 TATCAAAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 39 0.85
22 7 0.15
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (20 bp):
TCAAAATTCTCATTTGAAAT
Found at i:32874850 original size:23 final size:23
Alignment explanation
Indices: 32874824--32874867 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
32874814 TTGAAACAAG
* *
32874824 TTTCATTAATTGATCATCATTAT
1 TTTCATCAATTGATCACCATTAT
*
32874847 TTTCATCACTTGATCACCATT
1 TTTCATCAATTGATCACCATT
32874868 TATAGGCTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (23 bp):
TTTCATCAATTGATCACCATTAT
Found at i:32874860 original size:231 final size:231
Alignment explanation
Indices: 32874457--32874914 Score: 774
Period size: 231 Copynumber: 2.0 Consensus size: 231
32874447 CAATCTCCAA
* **
32874457 ACAACAATGCAAACATAATGCATGTAATGTGGATGTCAATGTCATGAAATTCTAATCAAAAGCTG
1 ACAACAATGCAAACATAATGCATGTAATATCAATGTCAATGTCATGAAATTCTAATCAAAAGCTG
* * *
32874522 GTAATATGGTTTTCAAGACCCCACTATCTCACGTTTTCTCCTTGATTAGCTTCTTAACACTTTGA
66 GTAATATGATTCTCAAGACCCCACCATCTCACGTTTTCTCCTTGATTAGCTTCTTAACACTTTGA
*
32874587 AACAAGTTTCATCAACTGATCATCATTATTTTCATCACTTGATCACTATTCAT-GAGCTTCTCAG
131 AACAAGTTTCATCAACTGATCATCATTATTTTCATCACTTGATCACCATTCATAG-GCTTCTCAG
*
32874651 CACTAACAATTCCAGAATAAGTTTCATCTATTGCCTT
195 CACTAACAATTCCAGAACAAGTTTCATCTATTGCCTT
*
32874688 ACAACAATGCAAACATAATGCATGTAATATCAATGTCAATGTCATGAAATTCTAATCAAAAGGTG
1 ACAACAATGCAAACATAATGCATGTAATATCAATGTCAATGTCATGAAATTCTAATCAAAAGCTG
*
32874753 GTAATATGATTCTCAAGACCCCACCATCTCACGTTTTCTCTTTGATTAGCTTCTTAACACTTTGA
66 GTAATATGATTCTCAAGACCCCACCATCTCACGTTTTCTCCTTGATTAGCTTCTTAACACTTTGA
* * *
32874818 AACAAGTTTCATTAATTGATCATCATTATTTTCATCACTTGATCACCATTTATAGGCTTCTCAGC
131 AACAAGTTTCATCAACTGATCATCATTATTTTCATCACTTGATCACCATTCATAGGCTTCTCAGC
*
32874883 ACTAACAATTCCAGAACAAGTTTCGTCTATTG
196 ACTAACAATTCCAGAACAAGTTTCATCTATTG
32874915 TCCTATATCA
Statistics
Matches: 212, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
231 211 1.00
232 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (231 bp):
ACAACAATGCAAACATAATGCATGTAATATCAATGTCAATGTCATGAAATTCTAATCAAAAGCTG
GTAATATGATTCTCAAGACCCCACCATCTCACGTTTTCTCCTTGATTAGCTTCTTAACACTTTGA
AACAAGTTTCATCAACTGATCATCATTATTTTCATCACTTGATCACCATTCATAGGCTTCTCAGC
ACTAACAATTCCAGAACAAGTTTCATCTATTGCCTT
Found at i:32874954 original size:49 final size:49
Alignment explanation
Indices: 32874882--32874978 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 49
32874872 GGCTTCTCAG
* *
32874882 CACTAACAATTCCAGAACAAGTTTCGTCTATTGTCCTATATCATTTAAT
1 CACTAACAATTCCAGAACAAGTTTCGTCCATTGCCCTATATCATTTAAT
* *
32874931 CACTAACAATTTCAGAATAAGTTTCGTCCATTGCCCTATATCATTTAA
1 CACTAACAATTCCAGAACAAGTTTCGTCCATTGCCCTATATCATTTAA
32874979 GCATAACTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (49 bp):
CACTAACAATTCCAGAACAAGTTTCGTCCATTGCCCTATATCATTTAAT
Found at i:32879787 original size:60 final size:60
Alignment explanation
Indices: 32879709--32879956 Score: 376
Period size: 61 Copynumber: 4.2 Consensus size: 60
32879699 CTTTAAGAAT
*
32879709 TTTTATTTTCAAGAAAAATTGATGCTTTCAACTTTTCCTTAAAAATGTTTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTGAAAA
* * *
32879769 TTTTATTTTCAAGAAAAATTGATACTTTCAATTTTTTTCTTAAAAATATTTTTTTT---AA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAA-CTTTTCCTTAAAAATGTTTTTTTTGAAAA
*
32879827 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATGTCTTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGT-TTTTTTTGAAAA
* * * *
32879888 TTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTGAAAA
32879948 TTTTATTTT
1 TTTTATTTT
32879957 ATATTTTATT
Statistics
Matches: 170, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
57 13 0.08
58 40 0.24
60 51 0.30
61 66 0.39
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.52
Consensus pattern (60 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTGAAAA
Found at i:32879833 original size:118 final size:120
Alignment explanation
Indices: 32879700--32879956 Score: 403
Period size: 118 Copynumber: 2.1 Consensus size: 120
32879690 ATTAAACCAC
*
32879700 TTTAAGAATTTTTATTTTCAAGAAAAATTGATGCTTTCAACTTTTCCTTAAAAATGT-TTTTTTT
1 TTTAA-AA-TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTCTTTTTTT
* * *
32879764 GAAAATTTTATTTTCAAGAAAAATTGATACTTTCAATTTTTTTCTTAAAAAT-ATTTT
64 GAAAATTTTATTTTAAAAAAAAATTGATACTTTCAA-CTTTTTCTTAAAAATGATTTT
* *
32879821 TTT-TAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATGTCTTTTTTTGA
1 TTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTCTTTTTTTGA
32879885 AAATTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTT
66 AAATTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTT
32879940 TTTGAAAATTTTATTTT
1 TTT-AAAATTTTATTTT
32879957 ATATTTTATT
Statistics
Matches: 125, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
118 60 0.48
119 51 0.41
121 14 0.11
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (120 bp):
TTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTCTTTTTTTGA
AAATTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTT
Found at i:32879957 original size:60 final size:60
Alignment explanation
Indices: 32879709--32879956 Score: 369
Period size: 60 Copynumber: 4.2 Consensus size: 60
32879699 CTTTAAGAAT
* * *
32879709 TTTTATTTTCAAGAAAAATTGATGCTTTCAACTTTTCCTTAAAAATGTTTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTTTTTGAAAA
* *
32879769 TTTTATTTTCAAGAAAAATTGATACTTTCAATTTTTTTCTTAAAAAT-ATTTTTTT--TAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAA-CTTTTTCTTAAAAATGATTTTTTTGAAAA
*
32879827 TTTTATTTTCAAGAAAAATTGATACTTTCAAC-TTTTCTTTAAAAATGTCTTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTC-TTAAAAATG-ATTTTTTTGAAAA
* *
32879888 TTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTTTTTGAAAA
32879948 TTTTATTTT
1 TTTTATTTT
32879957 ATATTTTATT
Statistics
Matches: 170, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
56 5 0.03
57 8 0.05
58 33 0.19
59 7 0.04
60 58 0.34
61 54 0.32
62 5 0.03
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.52
Consensus pattern (60 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATGATTTTTTTGAAAA
Found at i:32882468 original size:17 final size:17
Alignment explanation
Indices: 32882448--32882539 Score: 60
Period size: 17 Copynumber: 5.4 Consensus size: 17
32882438 TTTCATATTT
32882448 GCAAGAATTGGAGATTC
1 GCAAGAATTGGAGATTC
* *
32882465 GCAAGCCATT-CAGATTC
1 GCAAG-AATTGGAGATTC
** *
32882482 ATAAGAATTGGATATTC
1 GCAAGAATTGGAGATTC
* * ** *
32882499 GTAAAAACTTTTAGATTA
1 GCAAGAA-TTGGAGATTC
*
32882517 GCAAGAATTAGAGATTC
1 GCAAGAATTGGAGATTC
32882534 GCAAGA
1 GCAAGA
32882540 CTTTAGATTC
Statistics
Matches: 54, Mismatches: 18, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
16 3 0.06
17 37 0.69
18 14 0.26
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (17 bp):
GCAAGAATTGGAGATTC
Found at i:32882549 original size:16 final size:16
Alignment explanation
Indices: 32882508--32882556 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
32882498 CGTAAAAACT
*
32882508 TTTAGATTAGCAAGAA
1 TTTAGATTCGCAAGAA
* *
32882524 TTAGAGATTCGCAAGAC
1 TT-TAGATTCGCAAGAA
*
32882541 TTTAGATTCGTAAGAA
1 TTTAGATTCGCAAGAA
32882557 ATTAAGATGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (16 bp):
TTTAGATTCGCAAGAA
Found at i:32882560 original size:34 final size:33
Alignment explanation
Indices: 32882408--32882622 Score: 121
Period size: 34 Copynumber: 6.3 Consensus size: 33
32882398 TGCAATTCAA
* *
32882408 AGATTCATAAGAATTAGAGATTC-ATAAGATTTT
1 AGATTCGTAAGAATTAGAGATTCGA-AAGACTTT
* * * * * * *
32882441 CATATTTGCAAGAATTGGAGATTCGCAAGCCATTC
1 -AGATTCGTAAGAATTAGAGATTCGAAAGAC-TTT
* * * *
32882476 AGATTCATAAGAATTGGATATTCGTAAAAACTTTT
1 AGATTCGTAAGAATTAGAGATTCG-AAAGAC-TTT
* * *
32882511 AGATTAGCAAGAATTAGAGATTCGCAAGACTTT
1 AGATTCGTAAGAATTAGAGATTCGAAAGACTTT
** *
32882544 AGATTCGTAAGAAATTA-AGATGTTTAAAAACTTCT
1 AGATTCGTAAG-AATTAGAGAT-TCGAAAGACTT-T
* *
32882579 AGATTCGTAAGAATT-GACGATTTGAAAGGCTTTT
1 AGATTCGTAAGAATTAGA-GATTCGAAAGAC-TTT
*
32882613 AGATTTGTAA
1 AGATTCGTAA
32882623 AAAATGAAGA
Statistics
Matches: 136, Mismatches: 36, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
33 16 0.12
34 77 0.57
35 43 0.32
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (33 bp):
AGATTCGTAAGAATTAGAGATTCGAAAGACTTT
Found at i:32883950 original size:20 final size:20
Alignment explanation
Indices: 32883925--32883969 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
32883915 AATTTGAGTT
*
32883925 TTTTTTTC-TTTTATTTTTTA
1 TTTTTTTCACTTT-TTTTTTA
32883945 TTTTTTTCACTTTTTTTTTA
1 TTTTTTTCACTTTTTTTTTA
32883965 TTTTT
1 TTTTT
32883970 CATTCTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTTTCACTTTTTTTTTA
Found at i:32883966 original size:27 final size:27
Alignment explanation
Indices: 32883927--32883988 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
32883917 TTTGAGTTTT
* *
32883927 TTTTTCTTTTATTTTTTATT-TTTTTCA
1 TTTTT-TTTTATTTTTCATTCTTTCTCA
32883954 CTTTTTTTTTATTTTTCATTCTTTCTCA
1 -TTTTTTTTTATTTTTCATTCTTTCTCA
32883982 TTTTTTT
1 TTTTTTT
32883989 GTCCATTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 20 0.65
28 11 0.35
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (27 bp):
TTTTTTTTTATTTTTCATTCTTTCTCA
Found at i:32883977 original size:20 final size:17
Alignment explanation
Indices: 32883938--32883971 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32883928 TTTTCTTTTA
32883938 TTTTTTATTTTTTTCAC
1 TTTTTTATTTTTTTCAC
*
32883955 TTTTTTTTTATTTTTCA
1 TTTTTTATT-TTTTTCA
32883972 TTCTTTCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTTTTTCAC
Found at i:32889344 original size:58 final size:56
Alignment explanation
Indices: 32889196--32889342 Score: 199
Period size: 54 Copynumber: 2.6 Consensus size: 56
32889186 TGCTTTTATA
*
32889196 TAAGAAAAATTGATACTTTCAATTTTTTCTC-AAA-GCATTTTGAAATTTTAATTT
1 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAATGCATTTTAAAATTTTAATTT
* * * * *
32889250 TAAAAAAAATTGATACTTTCAATTTCTTCTTGAAAATGCTTTTTAAAATTTTTATTT
1 TAAGAAAAATTGATACTTTCAATTTTTTC-TCAAAATGCATTTTAAAATTTTAATTT
*
32889307 TGAAGAAAAATTGATACTTTTAATTTTTTCTCAAAA
1 T-AAGAAAAATTGATACTTTCAATTTTTTCTCAAAA
32889343 ATATTTTTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 27 0.34
55 1 0.01
56 3 0.04
57 23 0.29
58 25 0.32
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (56 bp):
TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAATGCATTTTAAAATTTTAATTT
Found at i:32889351 original size:58 final size:55
Alignment explanation
Indices: 32889196--32889350 Score: 186
Period size: 58 Copynumber: 2.8 Consensus size: 55
32889186 TGCTTTTATA
** *
32889196 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAGCA-TTTTGAAATTTTAATTT
1 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAATATTTTTAAAATTTTAATTT
* * * * *
32889250 TAAAAAAAATTGATACTTTCAATTTCTTCTTGAAAATGCTTTTTAAAATTTTTATTT
1 TAAGAAAAATTGATACTTTCAATTTTTTC-TCAAAAT-ATTTTTAAAATTTTAATTT
*
32889307 TGAAGAAAAATTGATACTTTTAATTTTTTCTCAAAAATATTTTT
1 T-AAGAAAAATTGATACTTTCAATTTTTTCTC-AAAATATTTTT
32889351 TTGATACATT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
54 27 0.33
55 4 0.05
57 22 0.27
58 30 0.36
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.48
Consensus pattern (55 bp):
TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAATATTTTTAAAATTTTAATTT
Found at i:32892905 original size:15 final size:15
Alignment explanation
Indices: 32892885--32892914 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32892875 CTTCTGTTAA
32892885 AAGTTTTACAAAGTT
1 AAGTTTTACAAAGTT
32892900 AAGTTTTACAAAGTT
1 AAGTTTTACAAAGTT
32892915 TTTTTAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
AAGTTTTACAAAGTT
Found at i:32897095 original size:16 final size:15
Alignment explanation
Indices: 32897074--32897127 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 15
32897064 AATTATTTGG
32897074 TATTTTTATTTTATTT
1 TATTTTTATTTT-TTT
32897090 TATTTTTATTTTTATT
1 TATTTTTATTTTT-TT
* *
32897106 TATATATATATTTTTT
1 TATTTTTAT-TTTTTT
32897122 TATTTT
1 TATTTT
32897128 CCTTAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 1 0.03
16 27 0.84
17 4 0.12
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTTATTTTTTT
Found at i:32897099 original size:22 final size:24
Alignment explanation
Indices: 32897074--32897120 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
32897064 AATTATTTGG
*
32897074 TATTTTTATTT-TAT-TTTATTTT
1 TATTTTTATTTATATATATATTTT
32897096 TATTTTTATTTATATATATATTTT
1 TATTTTTATTTATATATATATTTT
32897120 T
1 T
32897121 TTATTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 3 0.14
24 8 0.36
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (24 bp):
TATTTTTATTTATATATATATTTT
Found at i:32897127 original size:6 final size:6
Alignment explanation
Indices: 32897074--32897120 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
32897064 AATTATTTGG
* * *
32897074 TATTTT TA-TTT TA-TTT TATTTT TATTTT TATTTA TATATA TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
32897120 T
1 T
32897121 TTATTTTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:32897196 original size:60 final size:58
Alignment explanation
Indices: 32897123--32897429 Score: 230
Period size: 60 Copynumber: 5.1 Consensus size: 58
32897113 ATATTTTTTT
* * * * *
32897123 ATTTTCCTTAAAATTAAAGTTTCAAAAAAAAATATTTTTAAGAGAAAGTTGAAAGTTTTA
1 ATTTTCCTGAAAATAAAAGTTT--AAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCA
* * *
32897183 ATTTTCCTGAAAATAAAAAAGGGTTTTAAAAAAATATTTTT-AGGAAAATTTGAAAGTATCA
1 ATTTTCCTGAAAAT--AAAA--GTTTAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCA
* * *
32897244 A-TTTCACTTGAAAATAAAAAAGTTTAAAACAAATATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTC-C-TGAAAAT--AAAAGTTTAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCA
* * * * * *
32897305 ATTTTTCTTTAAATTAAAA--TTAAAAAATATATATTTTGAA-AAAAAGTTGGAAGTACCA
1 A-TTTTCCTGAAAATAAAAGTTTAAAAAA-A-ATATTTTTAAGAAAAAGTTGAAAGTATCA
* * * *
32897363 ATTTTTCTTAAAAATAAAAATTATCAAGAAAAATA-TTTTAAGAAAAAGTTGAAAGTATCAA
1 A-TTTTCCTGAAAATAAAAGTT-T-AAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATC-A
32897424 ATTTTC
1 ATTTTC
32897430 TTGTACAAAA
Statistics
Matches: 203, Mismatches: 27, Indels: 34
0.77 0.10 0.13
Matches are distributed among these distances:
57 7 0.03
58 33 0.16
59 17 0.08
60 58 0.29
61 45 0.22
62 35 0.17
63 4 0.02
64 4 0.02
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.36
Consensus pattern (58 bp):
ATTTTCCTGAAAATAAAAGTTTAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCA
Found at i:32897247 original size:61 final size:60
Alignment explanation
Indices: 32897148--32897429 Score: 235
Period size: 61 Copynumber: 4.7 Consensus size: 60
32897138 AAAGTTTCAA
* * *
32897148 AAAAAAATATTTTTAAGAGAAAGTTGAAAGTTTTAATTTTC-C-TGAAAATAAAAAAGGGTTTT
1 AAAAAAATATTTTTAGGA-AAAGTTGAAAGTATCAATTTTCACTTGAAAATAAAAAA--G-TTT
*
32897210 AAAAAAATATTTTTAGGAAAATTTGAAAGTATCAA-TTTCACTTGAAAATAAAAAAGTTT
1 AAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCACTTGAAAATAAAAAAGTTT
* * *
32897269 AAAACAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT-TCTT-TAAAT-TAAAA--TT
1 AAAA-AAATATTTTTA-GGAAAAGTTGAAAGTATCAATTTTCACTTGAAAATAAAAAAGTTT
** * * * *
32897326 AAAAAATATATATTTTGAAAAAAAGTTGGAAGTACCAATTTT-TCTTAAAAAT-AAAAA-TTAT
1 AAAAAA-ATAT-TTTT-AGGAAAAGTTGAAAGTATCAATTTTCACTTGAAAATAAAAAAGTT-T
* *
32897387 CAAGAAAAATATTTTAAGAAAAAGTTGAAAGTATCAAATTTTC
1 -AA-AAAAATATTTTTAGGAAAAGTTGAAAGTATC-AATTTTC
32897430 TTGTACAAAA
Statistics
Matches: 187, Mismatches: 18, Indels: 30
0.80 0.08 0.13
Matches are distributed among these distances:
56 2 0.01
57 10 0.05
58 28 0.15
59 20 0.11
60 37 0.20
61 47 0.25
62 39 0.21
63 4 0.02
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (60 bp):
AAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCACTTGAAAATAAAAAAGTTT
Found at i:32907916 original size:1 final size:1
Alignment explanation
Indices: 32907912--32907966 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
32907902 GGTAAAAATT
* * * * * *
32907912 AAAAAAAATAAAAATAAAAATAAAAAAAATAAAAAAAATAAAAAAATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32907967 GACTCAAGAC
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (1 bp):
A
Found at i:32907916 original size:8 final size:8
Alignment explanation
Indices: 32907905--32907965 Score: 72
Period size: 8 Copynumber: 7.8 Consensus size: 8
32907895 AAAAAAAGGT
*
32907905 AAAAATTA
1 AAAAAATA
32907913 AAAAAA-A
1 AAAAAATA
*
32907920 TAAAAATA
1 AAAAAATA
*
32907928 AAAATA-A
1 AAAAAATA
32907935 AAAAAATAA
1 AAAAAAT-A
32907944 AAAAAATA
1 AAAAAATA
32907952 AAAAAATA
1 AAAAAATA
32907960 AAAAAA
1 AAAAAA
32907966 AGACTCAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
7 12 0.27
8 25 0.56
9 8 0.18
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATA
Found at i:32907917 original size:9 final size:9
Alignment explanation
Indices: 32907905--32907966 Score: 81
Period size: 9 Copynumber: 6.7 Consensus size: 9
32907895 AAAAAAAGGT
*
32907905 AAAAATTAA
1 AAAAAATAA
32907914 AAAAAATAAAA
1 AAAAAAT--AA
32907925 ATAAAAATAA
1 A-AAAAATAA
32907935 AAAAAATAA
1 AAAAAATAA
32907944 AAAAAAT-A
1 AAAAAATAA
32907952 AAAAAATAA
1 AAAAAATAA
32907961 AAAAAA
1 AAAAAA
32907967 GACTCAAGAC
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
8 8 0.17
9 28 0.58
10 3 0.06
11 3 0.06
12 6 0.12
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:32907917 original size:16 final size:15
Alignment explanation
Indices: 32907904--32907966 Score: 83
Period size: 15 Copynumber: 4.0 Consensus size: 15
32907894 GAAAAAAAGG
32907904 TAAAAATTAAAAAAAA
1 TAAAAA-TAAAAAAAA
32907920 TAAAAATAAAAATAAA
1 TAAAAATAAAAA-AAA
32907936 -AAAAATAAAAAAAA
1 TAAAAATAAAAAAAA
32907950 TAAAAAAATAAAAAAAA
1 T--AAAAATAAAAAAAA
32907967 GACTCAAGAC
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.07
15 17 0.40
16 9 0.21
17 14 0.33
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (15 bp):
TAAAAATAAAAAAAA
Found at i:32908688 original size:16 final size:16
Alignment explanation
Indices: 32908667--32908706 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
32908657 GCTAGCATAA
*
32908667 CATGCATTGAATTTTG
1 CATGCATTGAATTTCG
*
32908683 CATGCATTGCATTTCG
1 CATGCATTGAATTTCG
32908699 CATAGCAT
1 CAT-GCAT
32908707 ATATTGCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (16 bp):
CATGCATTGAATTTCG
Found at i:32909033 original size:43 final size:43
Alignment explanation
Indices: 32908970--32909262 Score: 244
Period size: 43 Copynumber: 6.9 Consensus size: 43
32908960 AGCAATTTAC
* * * *
32908970 TTTCAAAAGTTGTAGTGCCTCTATTTAGAAGAGCTTTGTTTATT
1 TTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* *
32909014 TTTCAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTATTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
*
32909057 TTCCAAAGTTGTT-A----C---TTAGAGGAGCTTTGTTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* ** *
32909092 TGTCCAAAGTCATTGAGCCTCTGTTTAGAGGAACTTTGTTTATT
1 T-TTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* ** *
32909136 TTTTAAAGTCATTGAAG-CTCTGTTTAAAGGAGCTTTGTTTATT
1 TTTCAAAGTTGTTG-AGCCTCTGTTTAGAGGAGCTTTGTTTATT
* * * * *
32909179 TGTCTAAAGTTATTGAGCCTCTGCTTAGAGGAGCCTTATTTATT
1 TTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* ** *
32909223 TTTCTAAAAAGTCGTTGAGCCTCTAATCAGAGGAGCTTTG
1 TTTC---AAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTG
32909263 ATCAAGATTT
Statistics
Matches: 204, Mismatches: 31, Indels: 26
0.78 0.12 0.10
Matches are distributed among these distances:
35 20 0.10
36 10 0.05
37 1 0.00
38 1 0.00
41 1 0.00
42 1 0.00
43 84 0.41
44 60 0.29
46 26 0.13
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (43 bp):
TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
Found at i:32909135 original size:44 final size:44
Alignment explanation
Indices: 32909072--32909262 Score: 224
Period size: 44 Copynumber: 4.3 Consensus size: 44
32909062 AAGTTGTTAC
*
32909072 TTAGAGGAGCTTTGTTTATTTGTCCAAAGTCATTGAGCCTCTGT
1 TTAGAGGAGCTTTGTTTATTTGTCTAAAGTCATTGAGCCTCTGT
* *
32909116 TTAGAGGAACTTTGTTTATTT-TTTAAAGTCATTGAAG-CTCTGT
1 TTAGAGGAGCTTTGTTTATTTGTCTAAAGTCATTG-AGCCTCTGT
* * *
32909159 TTAAAGGAGCTTTGTTTATTTGTCTAAAGTTATTGAGCCTCTGC
1 TTAGAGGAGCTTTGTTTATTTGTCTAAAGTCATTGAGCCTCTGT
* * * * **
32909203 TTAGAGGAGCCTTATTTATTTTTCTAAAAAGTCGTTGAGCCTCTAA
1 TTAGAGGAGCTTTGTTTATTTGTCT--AAAGTCATTGAGCCTCTGT
*
32909249 TCAGAGGAGCTTTG
1 TTAGAGGAGCTTTG
32909263 ATCAAGATTT
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
43 38 0.31
44 59 0.48
46 26 0.21
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (44 bp):
TTAGAGGAGCTTTGTTTATTTGTCTAAAGTCATTGAGCCTCTGT
Found at i:32909474 original size:10 final size:11
Alignment explanation
Indices: 32909453--32909541 Score: 66
Period size: 10 Copynumber: 8.4 Consensus size: 11
32909443 TCTCTTTTTA
32909453 TTATTATTATT
1 TTATTATTATT
32909464 TTATT-TTATT
1 TTATTATTATT
32909474 TTATTATTA-T
1 TTATTATTATT
*
32909484 TTATTGTT-TT
1 TTATTATTATT
*
32909494 TT-TTGTT-TAT
1 TTATTATTAT-T
32909504 TT-TTATTATT
1 TTATTATTATT
32909514 TGCTATTA-TATT
1 T--TATTATTATT
*
32909526 TTTTTATTGATT
1 TTATTATT-ATT
32909538 TTAT
1 TTAT
32909542 CTTTTCTTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
9 6 0.09
10 34 0.52
11 10 0.15
12 12 0.18
13 3 0.05
ACGTcount: A:0.20, C:0.01, G:0.04, T:0.74
Consensus pattern (11 bp):
TTATTATTATT
Found at i:32909496 original size:21 final size:21
Alignment explanation
Indices: 32909447--32909496 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32909437 TTTTTTTCTC
*
32909447 TTTTTATTATTATTATTTTAT
1 TTTTTTTTATTATTATTTTAT
*
32909468 TTTATTTTATTATTA-TTTAT
1 TTTTTTTTATTATTATTTTAT
32909488 TGTTTTTTT
1 T-TTTTTTT
32909497 TGTTTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (21 bp):
TTTTTTTTATTATTATTTTAT
Found at i:32909528 original size:32 final size:30
Alignment explanation
Indices: 32909450--32909541 Score: 80
Period size: 32 Copynumber: 2.9 Consensus size: 30
32909440 TTTTCTCTTT
*
32909450 TTAT-TATTATTATTTTATTTTATTTTATTA
1 TTATCTATTA-TATTTTTTTTTATTTTATTA
* * *
32909480 TTATTTATTGTTTTTTTTGTTTATTTTTATTA
1 TTATCTATTATATTTTTT-TTTA-TTTTATTA
32909512 TT-TGCTATTATATTTTTTTATTGATTTTAT
1 TTAT-CTATTATATTTTTTT-TT-ATTTTAT
32909542 CTTTTCTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
30 10 0.20
31 10 0.20
32 29 0.58
33 1 0.02
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (30 bp):
TTATCTATTATATTTTTTTTTATTTTATTA
Found at i:32910442 original size:60 final size:57
Alignment explanation
Indices: 32910369--32910670 Score: 291
Period size: 60 Copynumber: 5.2 Consensus size: 57
32910359 ATATTTTTTG
* ** *
32910369 ATTTTCCTTAAAAT-TAAAGTTTCAAAAATATATATTTTTAAGAGAAAGTTGAAAGTATCA
1 ATTTT-CTTAAAATAAAAAGTTTTTAAAA-A-ATATTTTT-AGGGAAAGTTGAAAGTATCA
32910429 ATTTTCTTGAAAATAAAAAAATGTTTTTAAAAAA-ATTTTTAGGGAAAGTTGAAAGTATCA
1 ATTTTCTT-AAAAT--AAAAA-GTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCA
32910489 A-TTTCTTTAAAAATAAAAAAGGGTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCA
1 ATTTTC-TT-AAAAT-AAAAA--GTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCA
* ** *
32910550 A-TTTC--CAAA-AAGGA-TTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATTA
1 ATTTTCTTAAAATAAAAAGTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCA
*
32910602 ATTTTTCTTGAAAATAAAAAAG--TTTAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCA
1 A-TTTTCTT-AAAAT-AAAAAGTTTTTAAAAA-ATATTTTTAGG-GAAAGTTGAAAGTATCA
32910662 ATTTTCTTA
1 ATTTTCTTA
32910671 GGAAGTAAAA
Statistics
Matches: 209, Mismatches: 15, Indels: 38
0.80 0.06 0.15
Matches are distributed among these distances:
52 38 0.18
54 4 0.02
55 3 0.01
57 6 0.03
58 9 0.04
59 34 0.16
60 65 0.31
61 37 0.18
62 1 0.00
63 4 0.02
64 8 0.04
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (57 bp):
ATTTTCTTAAAATAAAAAGTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCA
Found at i:32910561 original size:52 final size:52
Alignment explanation
Indices: 32910504--32910605 Score: 186
Period size: 52 Copynumber: 2.0 Consensus size: 52
32910494 TTTAAAAATA
*
32910504 AAAAAGGGTTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCC
1 AAAAAGGATTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCC
*
32910556 AAAAAGGATTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATTAATTT
1 AAAAAGGATTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTT
32910606 TTCTTGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.36
Consensus pattern (52 bp):
AAAAAGGATTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCC
Found at i:32910568 original size:112 final size:112
Alignment explanation
Indices: 32910452--32910665 Score: 328
Period size: 112 Copynumber: 1.9 Consensus size: 112
32910442 TAAAAAAATG
32910452 TTTTTAAAAAA-ATTTTTAGGGAAAGTTGAAAGTATCAATTTCT-TTAAAAATAAAAAAGGGTTT
1 TTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAAAA--G--T
*
32910515 TTAAAAA-ATATTTTTAGG-GAAAGTTGAAAGTATCAATTTCCAAAAAGGA
62 TTAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTCCAAAAAGGA
* * *
32910564 TTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAAAGTTTAA
1 TTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAAAAGTTTAA
32910629 AAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTT
66 AAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTT
32910666 TCTTAGGAAG
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
110 8 0.09
111 11 0.12
112 32 0.34
113 30 0.32
114 13 0.14
ACGTcount: A:0.45, C:0.03, G:0.14, T:0.37
Consensus pattern (112 bp):
TTTTTAAAAAATATTTTTAGGGAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAAAAGTTTAA
AAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTCCAAAAAGGA
Found at i:32910728 original size:71 final size:72
Alignment explanation
Indices: 32910612--32910769 Score: 178
Period size: 71 Copynumber: 2.2 Consensus size: 72
32910602 ATTTTTCTTG
* * * * * *
32910612 AAAATAAAAAAGTTT-AAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAA-TTTTCTTAGGAA
1 AAAA-AAAAAATTTTCAAAAA-GTATTTTGAGGAAAAAGCTAAAAGTATCAATTTTTCTTA-AAA
32910675 GTAAAATTTC
63 GTAAAATTTC
* * *
32910685 TAAAATAAAATTTTCAAAAAGTATTTTGA-GAAAAAGCTAAAAGTATCAATTTTTCTTAAAATTA
1 AAAAAAAAAATTTTCAAAAAGTATTTTGAGGAAAAAGCTAAAAGTATCAATTTTTCTTAAAAGTA
*
32910749 AATTTTC
66 AAATTTC
32910756 AAAAAAAAAATTTT
1 AAAAAAAAAATTTT
32910770 GAGGAAAAGT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
71 40 0.56
72 23 0.32
73 8 0.11
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (72 bp):
AAAAAAAAAATTTTCAAAAAGTATTTTGAGGAAAAAGCTAAAAGTATCAATTTTTCTTAAAAGTA
AAATTTC
Found at i:32910836 original size:60 final size:58
Alignment explanation
Indices: 32910724--32910871 Score: 172
Period size: 60 Copynumber: 2.5 Consensus size: 58
32910714 GAAAAAGCTA
* * * *
32910724 AAAGTATCAATTTTTCTTAAAAT-TAAATTTTCAAAAAAAAAATTTTGAGGAAAAGTTG
1 AAAGTACCAA-TTTTCTTAAAATAAAAATTATCAAAAAAAAAATTTTAAGGAAAAGTTG
* * * *
32910782 GATGTACCAATTTTACTTAAAAATAAAAATTATCAAGAAAAACATTTTAAGGAAAAGTTG
1 AAAGTACCAATTTT-CTT-AAAATAAAAATTATCAAAAAAAAAATTTTAAGGAAAAGTTG
*
32910842 AAAGTATCAATTTTCTTTAAAATAAAAATT
1 AAAGTACCAATTTTC-TTAAAATAAAAATT
32910872 TCTGAATGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
57 4 0.05
58 10 0.13
59 18 0.24
60 43 0.57
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.34
Consensus pattern (58 bp):
AAAGTACCAATTTTCTTAAAATAAAAATTATCAAAAAAAAAATTTTAAGGAAAAGTTG
Found at i:32911017 original size:8 final size:9
Alignment explanation
Indices: 32910988--32911027 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
32910978 TTCCTTTTTA
32910988 TTTTA-TTC
1 TTTTATTTC
32910996 TTTTATTTC
1 TTTTATTTC
32911005 TTTTATTTC
1 TTTTATTTC
* *
32911014 TTTAATTTT
1 TTTTATTTC
32911023 TTTTA
1 TTTTA
32911028 ATGTTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTATTTC
Found at i:32912363 original size:20 final size:20
Alignment explanation
Indices: 32912327--32912365 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32912317 TTAGAATTCA
*
32912327 ATAAAAATAATATTTTTTAG
1 ATAAAAATAATAGTTTTTAG
32912347 ATAAAAA-ACATAGTTTTTA
1 ATAAAAATA-ATAGTTTTTA
32912366 TTAAAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
ATAAAAATAATAGTTTTTAG
Found at i:32918176 original size:20 final size:22
Alignment explanation
Indices: 32918151--32918191 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
32918141 GTGTTTAGGA
*
32918151 AGTGATT-CTATTCCA-GCCAC
1 AGTGATTGATATTCCATGCCAC
32918171 AGTGATTGATATTCCATGCCA
1 AGTGATTGATATTCCATGCCA
32918192 TTAATAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (22 bp):
AGTGATTGATATTCCATGCCAC
Found at i:32923146 original size:14 final size:14
Alignment explanation
Indices: 32923129--32923171 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
32923119 AAAGATGAAC
*
32923129 ATAATAATTTTTTT
1 ATAAAAATTTTTTT
*
32923143 ATAAAAAATATTTTT
1 AT-AAAAATTTTTTT
*
32923158 AAAAAAATTTTTTT
1 ATAAAAATTTTTTT
32923172 TCTCTAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAAAAATTTTTTT
Found at i:32923172 original size:15 final size:15
Alignment explanation
Indices: 32923134--32923171 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
32923124 TGAACATAAT
32923134 AATTTTTTTATAAAA
1 AATTTTTTTATAAAA
*
32923149 AATATTTTTA-AAAA
1 AATTTTTTTATAAAA
32923163 AATTTTTTT
1 AATTTTTTT
32923172 TCTCTAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTTTATAAAA
Found at i:32925928 original size:68 final size:68
Alignment explanation
Indices: 32925819--32925954 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
32925809 GCAAATCCCA
32925819 ACAAATCTTCCCTTGACTTGAATCTCTAAACACTTCAATAGAATCTATAAAGTTAACATGCTTAC
1 ACAAATCTTCCCTTGACTTGAATCTCTAAACACTTCAATAGAATCTATAAAGTTAACATGCTTAC
32925884 CTT
66 CTT
32925887 ACAAATCTTCCCTTGACTTGAATCTCTAAACACTTCAATAGAATCTATAAAGTTAACATGCTTAC
1 ACAAATCTTCCCTTGACTTGAATCTCTAAACACTTCAATAGAATCTATAAAGTTAACATGCTTAC
32925952 CTT
66 CTT
32925955 TCTTCTTTTC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (68 bp):
ACAAATCTTCCCTTGACTTGAATCTCTAAACACTTCAATAGAATCTATAAAGTTAACATGCTTAC
CTT
Found at i:32928374 original size:18 final size:18
Alignment explanation
Indices: 32928335--32928375 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
32928325 AGCAATATCA
32928335 CTTTTTTCTTCATTCAAT
1 CTTTTTTCTTCATTCAAT
*
32928353 -TTTTTTTTATCATTC-AT
1 CTTTTTTCT-TCATTCAAT
32928370 CTTTTT
1 CTTTTT
32928376 GAAAGCAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTTCTTCATTCAAT
Found at i:32937797 original size:16 final size:17
Alignment explanation
Indices: 32937761--32937797 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32937751 AATTTTGAAG
32937761 AATTTTGAAATGCTAAC
1 AATTTTGAAATGCTAAC
*
32937778 -ATTTTGAAATG-TACC
1 AATTTTGAAATGCTAAC
32937793 AATTT
1 AATTT
32937798 AAAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (17 bp):
AATTTTGAAATGCTAAC
Found at i:32938794 original size:21 final size:21
Alignment explanation
Indices: 32938768--32938819 Score: 95
Period size: 21 Copynumber: 2.4 Consensus size: 21
32938758 CATGGAGCTG
32938768 AGCTGTTTTACCTCCGCGCTA
1 AGCTGTTTTACCTCCGCGCTA
32938789 AGCTGTTTTACCTCCGCGCTA
1 AGCTGTTTTACCTCCGCGCTA
32938810 AGCTGATTTT
1 AGCTG-TTTT
32938820 TTGGTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.15, C:0.29, G:0.19, T:0.37
Consensus pattern (21 bp):
AGCTGTTTTACCTCCGCGCTA
Found at i:32944689 original size:17 final size:17
Alignment explanation
Indices: 32944639--32944689 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
32944629 ATGGATGAAA
*
32944639 AAAATAAAAATGAAAAGAT
1 AAAAT-AAAAT-AAAAAAT
32944658 -AAA-AAAATAAAAAAT
1 AAAATAAAATAAAAAAT
32944673 AAAATAAAATAAAAAAT
1 AAAATAAAATAAAAAAT
32944690 GTAAAATGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 6 0.21
16 8 0.28
17 12 0.41
18 3 0.10
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:32945757 original size:33 final size:33
Alignment explanation
Indices: 32945698--32945767 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
32945688 CTTGACATTT
** *
32945698 CATAGCATGCATTGCATTTTTAAATGTTTAGTG
1 CATAGCATGCATTGCATTTCAAAATGTCTAGTG
32945731 CATAGCATGCATTGCA-TTCAAGAATGTCTAGTG
1 CATAGCATGCATTGCATTTCAA-AATGTCTAGTG
32945764 CATA
1 CATA
32945768 AAGTAGGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (33 bp):
CATAGCATGCATTGCATTTCAAAATGTCTAGTG
Found at i:32946098 original size:43 final size:43
Alignment explanation
Indices: 32946050--32946207 Score: 248
Period size: 43 Copynumber: 3.7 Consensus size: 43
32946040 TGTCGAAGAG
* *
32946050 CTTATTTATTTTTTCAAAGTCG-TGAGCCTCTGTTTAGAGGAAT
1 CTTATTTA-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGT
32946093 CTTATTTA-TTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGT
1 CTTATTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGT
*
32946136 TTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGT
1 CTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGT
*
32946179 TTTATTTATTTTTCAAAGTTGTTGAGCCT
1 CTTATTTATTTTTCAAAGTTGTTGAGCCT
32946208 TTATTACTCT
Statistics
Matches: 109, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
41 5 0.05
42 6 0.06
43 93 0.85
44 5 0.05
ACGTcount: A:0.22, C:0.11, G:0.19, T:0.48
Consensus pattern (43 bp):
CTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGT
Found at i:32946317 original size:110 final size:110
Alignment explanation
Indices: 32946120--32946317 Score: 254
Period size: 110 Copynumber: 1.8 Consensus size: 110
32946110 GTTGTTGAGC
* * * ** * * **
32946120 CTCTGTTTAGAGGAGTTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGTTTTATT
1 CTCTATTTAGAGGAGTCTTAGTTATTTTTCAAAGTTGTTGAGCCTCTACTTAAAAGAGCCTTATT
* *
32946185 TATTTTTCAAAGTTGTTGAGCCTTTATTACTCTATTTAGAGGAAT
66 TATTTTTCAAAGTCGTTAAGCCTTTATTACTCTATTTAGAGGAAT
* * *
32946230 CTCTATTTATAGGAGTCTTAGTTATTTTTCAAAGTTGTTGAGCTTTTACTTAAAAGAGCCTTATT
1 CTCTATTTAGAGGAGTCTTAGTTATTTTTCAAAGTTGTTGAGCCTCTACTTAAAAGAGCCTTATT
32946295 TATTTTTTCAAAGTCG-TAAGCCT
66 TA-TTTTTCAAAGTCGTTAAGCCT
32946318 CCGGTTAGAG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
110 61 0.84
111 12 0.16
ACGTcount: A:0.24, C:0.12, G:0.17, T:0.47
Consensus pattern (110 bp):
CTCTATTTAGAGGAGTCTTAGTTATTTTTCAAAGTTGTTGAGCCTCTACTTAAAAGAGCCTTATT
TATTTTTCAAAGTCGTTAAGCCTTTATTACTCTATTTAGAGGAAT
Found at i:32946332 original size:43 final size:43
Alignment explanation
Indices: 32946285--32946435 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
32946275 TTACTTAAAA
* *
32946285 GAGCCTTATTTATTTTTTCAAAGTCGTAAGCCTCCGGTTAGAG
1 GAGCCTTATTTATTTTTTCAAAGTCGTAAGCCTCTGCTTAGAG
* * *
32946328 GAGCCTTATTTATTTTTT-AAAGTTGTTAAGCCTATACTTAGAG
1 GAGCCTTATTTATTTTTTCAAAGTCG-TAAGCCTCTGCTTAGAG
* * * *
32946371 GAGCCTTATTTA-TTTTTCAAATTCATTGAGCCTCTGTTTAGAG
1 GAGCCTTATTTATTTTTTCAAAGTC-GTAAGCCTCTGCTTAGAG
32946414 GAGCCTTA-TT-TTTTTTCAAAGT
1 GAGCCTTATTTATTTTTTCAAAGT
32946436 TATTGAGTCT
Statistics
Matches: 91, Mismatches: 13, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 23 0.25
43 68 0.75
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.43
Consensus pattern (43 bp):
GAGCCTTATTTATTTTTTCAAAGTCGTAAGCCTCTGCTTAGAG
Found at i:32946476 original size:85 final size:83
Alignment explanation
Indices: 32946230--32946586 Score: 284
Period size: 86 Copynumber: 4.1 Consensus size: 83
32946220 TTAGAGGAAT
* * * * * * * * *
32946230 CTCTATTTATAGGAGTCTTAGTTATTTTTCAAAGTTGTTGAGCTTTTACTTAAAAGAGCCTTATT
1 CTCTGTTTAGAGGAGCCTTA-TTTTTTTTCAAAGTTATTGAGCCTCTA-TTTAAAGAGCTTTATT
* ** *
32946295 TATTTTTTCAAAGTCGTAAGC
64 TA-TTTTTCAAATTATTGAGC
* * * * * * * * *
32946316 CTCCGGTTAGAGGAGCCTTATTTATTTTTTAAAGTTGTTAAGCCTATACTTAGAGGAGCCTTATT
1 CTCTGTTTAGAGGAGCCTTATTT-TTTTTCAAAGTTATTGAGCCTCTATTTA-AAGAGCTTTATT
32946381 TATTTTTCAAATTCATTGAGC
64 TATTTTTCAAATT-ATTGAGC
*
32946402 CTCTGTTTAGAGGAGCCTTATTTTTTTTCAAAGTTATTGAGTCTCTATTTAAATGAGCTTTATTT
1 CTCTGTTTAGAGGAGCCTTATTTTTTTTCAAAGTTATTGAGCCTCTATTTAAA-GAGCTTTATTT
* * * * *
32946467 ACTTGTCAAATTTGTTAAAC
65 ATTTTTCAAA-TTATTGAGC
* * **
32946487 CTCTGCTTAGAGGAGCCTT-TGTTTATTTTCAAAAGTCATTGAGCCTCTATTTAAAGAAATCTTA
1 CTCTGTTTAGAGGAGCCTTAT-TTT-TTTTC-AAAGTTATTGAGCCTCTATTTAAAGAGCT-TTA
32946551 GTTTATTTTTCAAAAGTTATTGAGC
62 -TTTATTTTTC-AAA-TTATTGAGC
32946576 CTCTGTTTAGA
1 CTCTGTTTAGA
32946587 AGAATTTTTA
Statistics
Matches: 216, Mismatches: 44, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
84 2 0.01
85 79 0.37
86 83 0.38
87 25 0.12
88 8 0.04
89 19 0.09
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (83 bp):
CTCTGTTTAGAGGAGCCTTATTTTTTTTCAAAGTTATTGAGCCTCTATTTAAAGAGCTTTATTTA
TTTTTCAAATTATTGAGC
Found at i:32950144 original size:32 final size:32
Alignment explanation
Indices: 32950108--32950175 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
32950098 TTAATACCAA
32950108 AACTGATTTGGTTATAAATTGAAAGAATGGAT
1 AACTGATTTGGTTATAAATTGAAAGAATGGAT
*
32950140 AACTGATTTGGTTATAAATTGAATGAATGGAT
1 AACTGATTTGGTTATAAATTGAAAGAATGGAT
32950172 AACT
1 AACT
32950176 TTAATTATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (32 bp):
AACTGATTTGGTTATAAATTGAAAGAATGGAT
Found at i:32952900 original size:47 final size:47
Alignment explanation
Indices: 32952831--32952925 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
32952821 CACCATCTTC
*
32952831 CCTCCCCCTCTCATTGCCTCCCCAAGAAAGCTTCGGGTTTTAACTGT
1 CCTCCCCCTCTCATTGCCTCCCCAAGAAAGCTTCGGGTTTCAACTGT
*
32952878 CCTCCCCCTCTCATTGCCTCCCCAAGAAGGCTTCGGGTTTCAACTGT
1 CCTCCCCCTCTCATTGCCTCCCCAAGAAAGCTTCGGGTTTCAACTGT
32952925 C
1 C
32952926 ATAATCTATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.16, C:0.40, G:0.16, T:0.28
Consensus pattern (47 bp):
CCTCCCCCTCTCATTGCCTCCCCAAGAAAGCTTCGGGTTTCAACTGT
Found at i:32953109 original size:2 final size:2
Alignment explanation
Indices: 32953102--32953137 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32953092 TGGGTTTAAA
32953102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32953138 GGAAGAAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32960489 original size:33 final size:33
Alignment explanation
Indices: 32960448--32960513 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
32960438 GTAAACTTTG
32960448 TTTTTAGACTATTGAATATTGGTATTATTTTAT
1 TTTTTAGACTATTGAATATTGGTATTATTTTAT
32960481 TTTTTAGACTATTGAATATTGGTATTATTTTAT
1 TTTTTAGACTATTGAATATTGGTATTATTTTAT
32960514 ACTGCCTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (33 bp):
TTTTTAGACTATTGAATATTGGTATTATTTTAT
Found at i:32961445 original size:26 final size:26
Alignment explanation
Indices: 32961415--32961465 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32961405 CAAATAAATT
*
32961415 TTTTTAATAAATTATTTAAATTGAATA
1 TTTTGAAT-AATTATTTAAATTGAATA
*
32961442 TTTTGGATAATTATTTAAATTGAA
1 TTTTGAATAATTATTTAAATTGAA
32961466 ATCAAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
TTTTGAATAATTATTTAAATTGAATA
Found at i:32962445 original size:2 final size:2
Alignment explanation
Indices: 32962438--32962470 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32962428 GTTCAATCAA
32962438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32962471 CACACACATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32963010 original size:18 final size:18
Alignment explanation
Indices: 32962986--32963031 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 18
32962976 TATTTATGCC
*
32962986 ATTTTTTATTTTTTTTTG
1 ATTTTTTATTTTATTTTG
32963004 -TTTTTT-TTTTATTTTG
1 ATTTTTTATTTTATTTTG
32963020 AGTTTTTTATTT
1 A-TTTTTTATTT
32963032 AAAAATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 9 0.38
17 6 0.25
18 6 0.25
19 3 0.12
ACGTcount: A:0.11, C:0.00, G:0.07, T:0.83
Consensus pattern (18 bp):
ATTTTTTATTTTATTTTG
Found at i:32963032 original size:18 final size:18
Alignment explanation
Indices: 32962987--32963032 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
32962977 ATTTATGCCA
**
32962987 TTTTTTATTT-TTTTTTG
1 TTTTTTATTTATTTTGAG
*
32963004 TTTTTTTTTTATTTTGAG
1 TTTTTTATTTATTTTGAG
32963022 TTTTTTATTTA
1 TTTTTTATTTA
32963033 AAAATATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.11, C:0.00, G:0.07, T:0.83
Consensus pattern (18 bp):
TTTTTTATTTATTTTGAG
Found at i:32968106 original size:21 final size:20
Alignment explanation
Indices: 32968076--32968114 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
32968066 ATTCTTTGTT
32968076 AGAAAAAATAAATAAAAAAAG
1 AGAAAAAATAAA-AAAAAAAG
*
32968097 AGAAATAATAAAAAAAAA
1 AGAAAAAATAAAAAAAAA
32968115 TTGGCTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (20 bp):
AGAAAAAATAAAAAAAAAAG
Found at i:32972680 original size:21 final size:21
Alignment explanation
Indices: 32972640--32972680 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32972630 TTAAATTATT
* *
32972640 AGAAAAAATAAATAAGAAAAG
1 AGAAAAAATAAAAAAAAAAAG
*
32972661 AGAAATAATAAAAAAAAAAA
1 AGAAAAAATAAAAAAAAAAA
32972681 TTTTGACTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (21 bp):
AGAAAAAATAAAAAAAAAAAG
Found at i:32974507 original size:50 final size:50
Alignment explanation
Indices: 32974452--32974546 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
32974442 TCTAACCAAG
32974452 TTTTTCTTTTCCTTTCAAACTGTTGTTTTCACTTTGGGTAGTTCACAAAT
1 TTTTTCTTTTCCTTTCAAACTGTTGTTTTCACTTTGGGTAGTTCACAAAT
* * *
32974502 TTTTTCTTTTCCTTTCAAATTGTTGTTTTCATTTTGTGTAGTTCA
1 TTTTTCTTTTCCTTTCAAACTGTTGTTTTCACTTTGGGTAGTTCA
32974547 GTAGTAGTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.16, C:0.16, G:0.12, T:0.57
Consensus pattern (50 bp):
TTTTTCTTTTCCTTTCAAACTGTTGTTTTCACTTTGGGTAGTTCACAAAT
Found at i:32981544 original size:73 final size:73
Alignment explanation
Indices: 32981440--32981609 Score: 202
Period size: 73 Copynumber: 2.3 Consensus size: 73
32981430 ACAAAACTGT
* * *** **
32981440 AAGTC-AAAAATAAAGAATCGATCGAGACAACATTGTAAATCGAATAATA-AAGAATGATTGAA-
1 AAGTCGAAAGATAAAGAATCGATTGAGACAACACCATAAATCGAATAA-AGAAGAATGA-CCAAG
*
32981502 ATAATATCAC
64 ACAATATCAC
*
32981512 AAGTCGAAAGATAAAGAATTGATTGAGACAACACCATAAATCGAATAAAGAAGAATGACCAAGAC
1 AAGTCGAAAGATAAAGAATCGATTGAGACAACACCATAAATCGAATAAAGAAGAATGACCAAGAC
32981577 AATATCAC
66 AATATCAC
* *
32981585 AAGTTGAAGGATAAAGAATCGATTG
1 AAGTCGAAAGATAAAGAATCGATTG
32981610 GGATAACAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
72 8 0.10
73 75 0.90
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (73 bp):
AAGTCGAAAGATAAAGAATCGATTGAGACAACACCATAAATCGAATAAAGAAGAATGACCAAGAC
AATATCAC
Found at i:32981556 original size:37 final size:37
Alignment explanation
Indices: 32981448--32981567 Score: 111
Period size: 37 Copynumber: 3.3 Consensus size: 37
32981438 GTAAGTCAAA
* * **
32981448 AATAAAGAATCGATCGAGACAACATTGTAAATCGAAT
1 AATAAAGAATTGATTGAGACAACATCATAAATCGAAT
* * * * *
32981485 AATAAAGAA-TGATTGAAATAATATCACAAGTCGAA-
1 AATAAAGAATTGATTGAGACAACATCATAAATCGAAT
*
32981520 AGATAAAGAATTGATTGAGACAACACCATAAATCGAAT
1 A-ATAAAGAATTGATTGAGACAACATCATAAATCGAAT
32981558 AA-AGAAGAAT
1 AATA-AAGAAT
32981568 GACCAAGACA
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
35 1 0.02
36 26 0.41
37 36 0.56
38 1 0.02
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (37 bp):
AATAAAGAATTGATTGAGACAACATCATAAATCGAAT
Found at i:32981983 original size:155 final size:153
Alignment explanation
Indices: 32981697--32982174 Score: 484
Period size: 155 Copynumber: 3.1 Consensus size: 153
32981687 TGAAGCTACA
* * * * * * ** *
32981697 TAAACTAGGCTTAAAATTGGGTACCAACTAAACTAGCCACAAATATTTCTTT-AAGGGCCAGATA
1 TAAACTAGGCTTCAAATTGGATTCCAGCCAAACTAGGCTTAAATCTTTCTTTGAA-GGCCAGATA
* * *
32981761 AATTGGGTTTAAAGCTTCATTGAGGGCCAGATAAACTAGGCTTAAGATTTTCTTG-GGGCTCAGA
65 AATT-GGCTTAAAACTTCATTG-GGGCTAGATAAACTAGGCTTAAGATTTTCTTGAGGGCT-AGA
*
32981825 TAAACTAGGCTTTCATTGATGGCCAGC
127 TAAACTAGGCTTTCATTGAAGGCCAGC
*
32981852 TAAACTAGGCTTCAAATTGGATGT-CAGCCAAACTAGGCTTAAATCTTTCTTTGAAGGCCAGATG
1 TAAACTAGGCTTCAAATTGGAT-TCCAGCCAAACTAGGCTTAAATCTTTCTTTGAAGGCCAGATA
* * *
32981916 AATTAGGCTTAAATCTTTATTGGGAGCTAGATAAACTAGG-TTGAAGATTTTCTTGAGGGCTAAA
65 AATT-GGCTTAAAACTTCATTGGG-GCTAGATAAACTAGGCTT-AAGATTTTCTTGAGGGCTAGA
*
32981980 TAAATTAGGCTTTCATT-AAGGGCCAGC
127 TAAACTAGGCTTTCATTGAA-GGCCAGC
* * * * * * * * *
32982007 TAAATTGGGTTTCAAATTGGGTTCCAGCTAAATTGGGCTTAAATCTTTCTTCGAGGGCCAGATAA
1 TAAACTAGGCTTCAAATTGGATTCCAGCCAAACTAGGCTTAAATCTTTCTTTGAAGGCCAGATAA
* * * * *
32982072 ATTGAGCTTAAAACTTCATTGGGTGGTAGCTAATCTGGGCTTAA-ATCTTTCTTCGAGAGCTAGA
66 ATTG-GCTTAAAACTTCATTGGG-GCTAGATAAACTAGGCTTAAGAT-TTTCTT-GAGGGCTAGA
*
32982136 TAAACT-GGACTTTCATTGAAGGCCAGG
127 TAAACTAGG-CTTTCATTGAAGGCCAGC
32982163 TAAACTAGGCTT
1 TAAACTAGGCTT
32982175 AAAACTTCAT
Statistics
Matches: 268, Mismatches: 42, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
154 9 0.03
155 212 0.79
156 45 0.17
157 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (153 bp):
TAAACTAGGCTTCAAATTGGATTCCAGCCAAACTAGGCTTAAATCTTTCTTTGAAGGCCAGATAA
ATTGGCTTAAAACTTCATTGGGGCTAGATAAACTAGGCTTAAGATTTTCTTGAGGGCTAGATAAA
CTAGGCTTTCATTGAAGGCCAGC
Found at i:32982348 original size:31 final size:31
Alignment explanation
Indices: 32982310--32982371 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
32982300 CTTAAGATTA
* *
32982310 GGTGTCAGATAAACTGGGCTTAAATTTTTAT
1 GGTGTCAGATAAACTGGACTTAAAATTTTAT
* *
32982341 GGTGTCAGTTAAGCTGGACTTAAAATTTTAT
1 GGTGTCAGATAAACTGGACTTAAAATTTTAT
32982372 TTCGGGCAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (31 bp):
GGTGTCAGATAAACTGGACTTAAAATTTTAT
Found at i:32982693 original size:31 final size:32
Alignment explanation
Indices: 32982630--32982702 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
32982620 TTGGGAGATT
*
32982630 AGATAAATTGGGCTTAAAATTTTTTATATGCC
1 AGATAAACTGGGCTTAAAATTTTTTATATGCC
* * *
32982662 AGATAAACTGGGCTT-AACTTTTTTTTGTGCC
1 AGATAAACTGGGCTTAAAATTTTTTATATGCC
32982693 AGATAAACTG
1 AGATAAACTG
32982703 ATTTGGATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 23 0.62
32 14 0.38
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (32 bp):
AGATAAACTGGGCTTAAAATTTTTTATATGCC
Found at i:32982831 original size:53 final size:53
Alignment explanation
Indices: 32982773--32982953 Score: 186
Period size: 53 Copynumber: 3.4 Consensus size: 53
32982763 ACTTCACTGG
** *
32982773 TGCCAGATAATCTAGGTTTATGTGCTAGCTATACTGGGCTTAAATCTCATTAA
1 TGCCAGATAATCTAGGTTTAAATGCTAGCTATACTGGGCTTAAATCTCATTGA
* * * * * * *
32982826 TGCCAGATAATCTAGGCTTAAAACT-TTA-TTAAACTGGGTTTAAAACTTCATTGG
1 TGCCAGATAATCTAGG-TTTAAA-TGCTAGCTATACTGGGCTTAAATC-TCATTGA
* * **
32982880 TGTCAGATAATCTGGGTTTGCATGCTAGCTATACTGGGCTTAAATCTCATTGA
1 TGCCAGATAATCTAGGTTTAAATGCTAGCTATACTGGGCTTAAATCTCATTGA
*
32982933 TGCCAGATAATCTAGGCTTAA
1 TGCCAGATAATCTAGGTTTAA
32982954 GACTTTATTG
Statistics
Matches: 97, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
52 1 0.01
53 57 0.59
54 38 0.39
55 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCAGATAATCTAGGTTTAAATGCTAGCTATACTGGGCTTAAATCTCATTGA
Found at i:32982936 original size:107 final size:107
Alignment explanation
Indices: 32982746--32982962 Score: 344
Period size: 107 Copynumber: 2.0 Consensus size: 107
32982736 TATGGTGCCA
* **
32982746 ATTAAATTGGATTTAAAACTTCACTGGTGCCAGATAATCTAGGTTTATGTGCTAGCTATACTGGG
1 ATTAAACTGGATTTAAAACTTCACTGGTGCCAGATAATCTAGGTTTACATGCTAGCTATACTGGG
32982811 CTTAAATCTCATTAATGCCAGATAATCTAGGCTTAAAACTTT
66 CTTAAATCTCATTAATGCCAGATAATCTAGGCTTAAAACTTT
* * * * *
32982853 ATTAAACTGGGTTTAAAACTTCATTGGTGTCAGATAATCTGGGTTTGCATGCTAGCTATACTGGG
1 ATTAAACTGGATTTAAAACTTCACTGGTGCCAGATAATCTAGGTTTACATGCTAGCTATACTGGG
* *
32982918 CTTAAATCTCATTGATGCCAGATAATCTAGGCTTAAGACTTT
66 CTTAAATCTCATTAATGCCAGATAATCTAGGCTTAAAACTTT
32982960 ATT
1 ATT
32982963 GATGCCAGCT
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 100 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (107 bp):
ATTAAACTGGATTTAAAACTTCACTGGTGCCAGATAATCTAGGTTTACATGCTAGCTATACTGGG
CTTAAATCTCATTAATGCCAGATAATCTAGGCTTAAAACTTT
Found at i:32982983 original size:32 final size:31
Alignment explanation
Indices: 32982901--32982983 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
32982891 CTGGGTTTGC
* *
32982901 ATGCTAGCTATACTGGGCTTAAATCTCATTG
1 ATGCCAGCTAAACTGGGCTTAAATCTCATTG
* * * *
32982932 ATGCCAGATAATCTAGGCTTAAGA-CTTTATTG
1 ATGCCAGCTAAACTGGGCTTAA-ATC-TCATTG
32982964 ATGCCAGCTAAACTGGGCTT
1 ATGCCAGCTAAACTGGGCTT
32982984 GCATGCCAGC
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
31 18 0.44
32 23 0.56
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (31 bp):
ATGCCAGCTAAACTGGGCTTAAATCTCATTG
Found at i:32983979 original size:22 final size:21
Alignment explanation
Indices: 32983945--32984004 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
32983935 TTTAGAGGAT
*
32983945 AAAAAATTATTTTTATTTATTTG
1 AAAAGATT-TTTTTATTTA-TTG
*
32983968 AAAAGATTTTTTCT-TGTATTG
1 AAAAGATTTTTT-TATTTATTG
**
32983989 AAGGGATTTTTTTATT
1 AAAAGATTTTTTTATT
32984005 ATTATTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 1 0.03
21 14 0.47
22 7 0.23
23 8 0.27
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.55
Consensus pattern (21 bp):
AAAAGATTTTTTTATTTATTG
Found at i:32984170 original size:18 final size:19
Alignment explanation
Indices: 32984149--32984190 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
32984139 AAAATGGGTT
*
32984149 AAAAAT-AAAATGAAATCA
1 AAAAATAAAAATAAAATCA
*
32984167 AAAAATAAAAATAAAATGA
1 AAAAATAAAAATAAAATCA
32984186 AAAAA
1 AAAAA
32984191 GGAAAACCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (19 bp):
AAAAATAAAAATAAAATCA
Found at i:32985087 original size:12 final size:12
Alignment explanation
Indices: 32985070--32985133 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
32985060 GAAAATAAAA
32985070 AATATAAAT-AT
1 AATATAAATAAT
32985081 AAGTATAAATAAT
1 AA-TATAAATAAT
32985094 AATAT-AATAA-
1 AATATAAATAAT
*
32985104 AATAGT-AATACT
1 AATA-TAAATAAT
*
32985116 AATATTAATAAT
1 AATATAAATAAT
*
32985128 AGTATA
1 AATATA
32985134 CTATATTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
10 4 0.09
11 13 0.30
12 23 0.52
13 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:32985126 original size:34 final size:33
Alignment explanation
Indices: 32985064--32985133 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 33
32985054 AAAAATGAAA
32985064 ATAAAAAATATAAATATAAGTATAAATAATAAT
1 ATAAAAAATATAAATATAAGTATAAATAATAAT
* *
32985097 ATAATAAAATAGT-AATACTAA-TATTAATAATAGT
1 ATAA-AAAATA-TAAATA-TAAGTATAAATAATAAT
32985131 ATA
1 ATA
32985134 CTATATTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
33 4 0.12
34 24 0.75
35 4 0.12
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (33 bp):
ATAAAAAATATAAATATAAGTATAAATAATAAT
Found at i:32985152 original size:17 final size:19
Alignment explanation
Indices: 32985111--32985155 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
32985101 TAAAATAGTA
*
32985111 ATACTAATATTAATAATAGT
1 ATACT-ATATTAATAACAGT
32985131 ATACTATATT-ATAACA-T
1 ATACTATATTAATAACAGT
32985148 ATACTATA
1 ATACTATA
32985156 ATAACAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 5 0.21
19 5 0.21
20 5 0.21
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (19 bp):
ATACTATATTAATAACAGT
Found at i:32985608 original size:119 final size:117
Alignment explanation
Indices: 32985414--32985725 Score: 313
Period size: 119 Copynumber: 2.6 Consensus size: 117
32985404 GAACTAAGTC
* * *
32985414 GAGGTCAATAATAAATGATCGAGGAAAAATCATGAATCATAAGAAATGATCTAGACTAAGCCAAT
1 GAGGTCAA-AATAAATGATCG-GGAAAAACCATGAATCATAAGAAATGATCTAGACTGAGCCAAG
* *
32985479 ATT-GGATGATTAAGATGAAACCACAAGTAAAAAATGAA-CGACCAAGAGCGAGTT
64 ATTAAG-TGATTAAGATGAAACCACAAGT-AAAAATAAAGCGACCAAGAGCGAGTT
* * * *
32985533 GAGGTCAAAAGTAAATGATCGGGATGAAACCATGAATCATAAGAAATAATTTAAACTGAGCCAAG
1 GAGGTCAAAA-TAAATGATCGGGA-AAAACCATGAATCATAAGAAATGATCTAGACTGAGCCAAG
** * ** * * * *
32985598 ATTAAGTGATTCGGATGAAATCATGAGTCAAAATAAAGCGATCAGGATCGAGTT
64 ATTAAGTGATTAAGATGAAACCACAAGTAAAAATAAAGCGACCAAGAGCGAGTT
* * * * * * *
32985652 GAGGTAGAAAATAAATTATTGAGACAAAGCCATGAATCGTAAGAAATGATCTGGACTGAGCCAAG
1 GAGGT-CAAAATAAATGATCGGGA-AAAACCATGAATCATAAGAAATGATCTAGACTGAGCCAAG
32985717 ATTAAGTGA
64 ATTAAGTGA
32985726 CCAGGATCGA
Statistics
Matches: 158, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
118 12 0.08
119 141 0.89
120 5 0.03
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (117 bp):
GAGGTCAAAATAAATGATCGGGAAAAACCATGAATCATAAGAAATGATCTAGACTGAGCCAAGAT
TAAGTGATTAAGATGAAACCACAAGTAAAAATAAAGCGACCAAGAGCGAGTT
Found at i:32985786 original size:87 final size:86
Alignment explanation
Indices: 32985640--32985803 Score: 220
Period size: 87 Copynumber: 1.9 Consensus size: 86
32985630 ATAAAGCGAT
* * * * * * *
32985640 CAGGATCGAGTTGAGGTAGAAAATAAATTATTGAGACAAAGCCATGAATCGTAAGAAATGATCTG
1 CAGGATCGAGTCGAGATAAAAAATAAATGATCGAGACAAAACCATGAATCATAAGAAATGATCT-
*
32985705 GACTGAGCCAAGATTAAGTGAC
65 AACTGAGCCAAGATTAAGTGAC
* *
32985727 CAGGATCGAGTCGAGATAAAAAATAAATGATCGGGATAAAACCATGAATCATAAGAAATGATCTA
1 CAGGATCGAGTCGAGATAAAAAATAAATGATCGAGACAAAACCATGAATCATAAGAAATGATCTA
*
32985792 ACTGAGTCAAGA
66 ACTGAGCCAAGA
32985804 CCAAGCAACC
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
86 11 0.17
87 55 0.83
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (86 bp):
CAGGATCGAGTCGAGATAAAAAATAAATGATCGAGACAAAACCATGAATCATAAGAAATGATCTA
ACTGAGCCAAGATTAAGTGAC
Found at i:32988055 original size:54 final size:49
Alignment explanation
Indices: 32987937--32988070 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
32987927 AAATTTTATT
** * * * *
32987937 TATTTTTTTTTTATTTTTAAA-TTTTCTACCATTTGGGTCATTTTATAAA
1 TATTTTTTTTGAATTTTAAAATTTTTC-ACCATTTAGGTCAATTTAAAAA
32987986 TATTTTTTTTGAATTTTAAAATTTTTCACCATTTAGGTCAATTTAAAAA
1 TATTTTTTTTGAATTTTAAAATTTTTCACCATTTAGGTCAATTTAAAAA
32988035 TATTTTCTTTTTTTGAAATTTTAAAATTTTTCACCA
1 TA---T-TTTTTTTG-AATTTTAAAATTTTTCACCA
32988071 ATCTTTTTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
49 39 0.53
50 5 0.07
52 1 0.01
53 8 0.11
54 20 0.27
ACGTcount: A:0.29, C:0.09, G:0.05, T:0.57
Consensus pattern (49 bp):
TATTTTTTTTGAATTTTAAAATTTTTCACCATTTAGGTCAATTTAAAAA
Found at i:32988636 original size:50 final size:51
Alignment explanation
Indices: 32988570--32988669 Score: 141
Period size: 50 Copynumber: 2.0 Consensus size: 51
32988560 TTAATTTATT
* * * *
32988570 TATTTTTTTGGGATTTTT-AAATTTTCTACTATTTGGGTCAATTTATAAATA
1 TATTTTTTTGGAATTTTTAAAATTTTC-ACCATTTAGGTCAATTTAGAAATA
32988621 TATTTTTTT-GAATTTTTAAAATTTTCACCATTTAGGTCAATTTAGAAAT
1 TATTTTTTTGGAATTTTTAAAATTTTCACCATTTAGGTCAATTTAGAAAT
32988670 TTTTTTCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 27 0.61
51 17 0.39
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (51 bp):
TATTTTTTTGGAATTTTTAAAATTTTCACCATTTAGGTCAATTTAGAAATA
Found at i:32989061 original size:15 final size:15
Alignment explanation
Indices: 32989043--32989071 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32989033 TCTAAAAAAA
32989043 TATATTTTAATTTTC
1 TATATTTTAATTTTC
32989058 TATATTTTAATTTT
1 TATATTTTAATTTT
32989072 TAAAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TATATTTTAATTTTC
Found at i:32989430 original size:12 final size:12
Alignment explanation
Indices: 32989395--32989428 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
32989385 ATATCCCCTG
32989395 TTCCTTCTTTCTT
1 TTCCTT-TTTCTT
32989408 TTCCTTTTTCTT
1 TTCCTTTTTCTT
32989420 TTCTCTTTT
1 TTC-CTTTT
32989429 CTCTCTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTCCTTTTTCTT
Found at i:32989766 original size:18 final size:19
Alignment explanation
Indices: 32989743--32989780 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
32989733 TTTTTTGTTA
*
32989743 TGTTTTTTTTGTGT-TCTT
1 TGTTTTTTATGTGTGTCTT
32989761 TGTTTTTTATGTGTGTCTT
1 TGTTTTTTATGTGTGTCTT
32989780 T
1 T
32989781 TGTTGCTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.03, C:0.05, G:0.18, T:0.74
Consensus pattern (19 bp):
TGTTTTTTATGTGTGTCTT
Found at i:32990332 original size:41 final size:41
Alignment explanation
Indices: 32990287--32990594 Score: 329
Period size: 41 Copynumber: 7.5 Consensus size: 41
32990277 AGACTAAACG
* ** *
32990287 ACTTTGGAAAATAAAATGCTCCTCTAAACATTGGCACAACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCACA
* *
32990328 ACTTT-AGAAAATAAGAA-GCTCCTTTAAACAAAGGCACCATA
1 ACTTTGA-AAAATAA-AATGCTCCTCTAAACAAAGGCACCACA
* ** * * * *
32990369 ACTTTGAAAAACAAAATGCTTTTCTAAGCAGAGGCGCCATA
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCACA
*
32990410 ACTTTG-AAAA-AAAATGCTCCTCTAAACAGAA-GCACCATA
1 ACTTTGAAAAATAAAATGCTCCTCTAAACA-AAGGCACCACA
*
32990449 ACTTTTGAAAAATAAAATGCTCCTCTAAACAAGGGCACCACA
1 AC-TTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCACA
* *
32990491 ACTTTGAAAAGTAAAATGCTCTTCTAAACAAAGGCACCACAA
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCAC-A
* * * *
32990533 ACTTTGAAAAATAAAATGCTCTTTTAAACAGAGGTACCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCACA
* *
32990574 ATTTTGAAAAATAAAAGGCTC
1 ACTTTGAAAAATAAAATGCTC
32990595 ATCAACAATC
Statistics
Matches: 228, Mismatches: 29, Indels: 20
0.82 0.10 0.07
Matches are distributed among these distances:
39 24 0.11
40 11 0.05
41 126 0.55
42 67 0.29
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (41 bp):
ACTTTGAAAAATAAAATGCTCCTCTAAACAAAGGCACCACA
Found at i:32990461 original size:122 final size:124
Alignment explanation
Indices: 32990287--32990594 Score: 374
Period size: 122 Copynumber: 2.5 Consensus size: 124
32990277 AGACTAAACG
** * *
32990287 ACTTTGGAAAATAAAATGCTCCTCTAAACATTGGCACAACAACTTTAG-AAAATAAGAA-GCTCC
1 ACTTT-GAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAA-AATGCTCC
* * * * * * *
32990350 TTTAAACAAAGGCACCATAACTTTGAAAAACAAAATGCTTTTCTAAGCAGAGGCGCCA-TA
64 TCTAAACAAAGGCACCACAACTTTGAAAAACAAAATGCTCTTCTAAACAAAGGCACCACAA
* *
32990410 ACTTTGAAAA-AAAATGCTCCTCTAAACAGAAGCACCATAACTTTTGAAAAATAAAATGCTCCTC
1 ACTTTGAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAAATGCTCCTC
* **
32990474 TAAACAAGGGCACCACAACTTTGAAAAGTAAAATGCTCTTCTAAACAAAGGCACCACAA
66 TAAACAAAGGCACCACAACTTTGAAAAACAAAATGCTCTTCTAAACAAAGGCACCACAA
* * * *
32990533 ACTTTGAAAAATAAAATGCTCTTTTAAACAGAGGTACCACAA-TTTTGAAAAATAAAAGGCTC
1 ACTTTG-AAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAAATGCTC
32990595 ATCAACAATC
Statistics
Matches: 158, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
121 32 0.20
122 66 0.42
123 12 0.08
124 23 0.15
125 25 0.16
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (124 bp):
ACTTTGAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAAATGCTCCTC
TAAACAAAGGCACCACAACTTTGAAAAACAAAATGCTCTTCTAAACAAAGGCACCACAA
Found at i:32990541 original size:83 final size:81
Alignment explanation
Indices: 32990287--32990594 Score: 347
Period size: 83 Copynumber: 3.8 Consensus size: 81
32990277 AGACTAAACG
* ** *
32990287 ACTTTGGAAAATAAAATGCTCCTCTAAACATTGGCACAACAACTTTAGAAAATAAGAA-GCTCCT
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTT-GAAAATAA-AATGCT-CT
32990351 T-TAAACAAAGGCACCATA
63 TCTAAACAAAGGCACCATA
* ** * * * *
32990369 ACTTTGAAAAACAAAATGCTTTTCTAAGCAGAGGCGCCATAACTTTGAAAA-AAAATGCTCCTCT
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAAATGCTCTTCT
32990433 AAACAGAA-GCACCATA
66 AAACA-AAGGCACCATA
32990449 ACTTTTGAAAAATAAAATGCTCCTCTAAACA-AGGGCACCACAACTTTGAAAAGTAAAATGCTCT
1 AC-TTTGAAAAATAAAATGCTCCTCTAAACAGA-GGCACCACAACTTTGAAAA-TAAAATGCTCT
*
32990513 TCTAAACAAAGGCACCACAA
63 TCTAAACAAAGGCACCA-TA
* * * * *
32990533 ACTTTGAAAAATAAAATGCTCTTTTAAACAGAGGTACCACAATTTTGAAAAATAAAAGGCTC
1 ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTG-AAAATAAAATGCTC
32990595 ATCAACAATC
Statistics
Matches: 191, Mismatches: 24, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
79 4 0.02
80 22 0.12
81 48 0.25
82 38 0.20
83 71 0.37
84 8 0.04
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (81 bp):
ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAAATGCTCTTCT
AAACAAAGGCACCATA
Found at i:32990909 original size:20 final size:20
Alignment explanation
Indices: 32990871--32990909 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32990861 TCACATCCAA
*
32990871 AAGTTCAAAACTTCTTATTC
1 AAGTTCAAAACTTCATATTC
**
32990891 AAGTTCAAAGGTTCATATT
1 AAGTTCAAAACTTCATATT
32990910 TAAAGTTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
AAGTTCAAAACTTCATATTC
Found at i:32991008 original size:21 final size:24
Alignment explanation
Indices: 32990954--32991000 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
32990944 TTTGAGTTCT
*
32990954 TCTTAAAGATTCTCATTTGAAAATG
1 TCTTAAAGATTTTCATTTGAAAA-G
32990979 TCTTAAAGATTTTCATTTGAAA
1 TCTTAAAGATTTTCATTTGAAA
32991001 TTTAAAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (24 bp):
TCTTAAAGATTTTCATTTGAAAAG
Found at i:32991052 original size:22 final size:22
Alignment explanation
Indices: 32991027--32991072 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
32991017 CAAGAACTCA
*
32991027 AAAATTCAAAGATTCTCATTTG
1 AAAACTCAAAGATTCTCATTTG
32991049 AAAACTCAAAGATTCTCATTTG
1 AAAACTCAAAGATTCTCATTTG
32991071 AA
1 AA
32991073 GATTTTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (22 bp):
AAAACTCAAAGATTCTCATTTG
Found at i:32991465 original size:48 final size:49
Alignment explanation
Indices: 32991367--32991466 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 49
32991357 TCTTCTATCA
* * **
32991367 TTTGATCACCACTCATAGGCTTCTTAGTACTAGCCATTTTAGAATTAAT
1 TTTGATCACCACTCATAGGCTTCTCAGTACTAACCATTTTAGAACAAAT
* *
32991416 TTTG-TCACCACTCATAGGTTTCTCAGTATTAACCATTTTAGAACAAAT
1 TTTGATCACCACTCATAGGCTTCTCAGTACTAACCATTTTAGAACAAAT
32991464 TTT
1 TTT
32991467 ACCCACTGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
48 41 0.91
49 4 0.09
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (49 bp):
TTTGATCACCACTCATAGGCTTCTCAGTACTAACCATTTTAGAACAAAT
Found at i:32992179 original size:10 final size:10
Alignment explanation
Indices: 32992164--32992237 Score: 52
Period size: 10 Copynumber: 7.8 Consensus size: 10
32992154 AATTTATGTC
32992164 TTCTTTTTCT
1 TTCTTTTTCT
* *
32992174 TTCTTTTCCA
1 TTCTTTTTCT
*
32992184 TT-TTTTTCA
1 TTCTTTTTCT
32992193 TTCTTTTAT-T
1 TTCTTTT-TCT
32992203 TTCTCTTTT-T
1 TTCT-TTTTCT
*
32992213 TT-TTTAT-T
1 TTCTTTTTCT
32992221 TTCTTTTTCT
1 TTCTTTTTCT
32992231 TT-TTTTT
1 TTCTTTTT
32992238 TTTTTTTACA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
8 6 0.11
9 18 0.34
10 25 0.47
11 4 0.08
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (10 bp):
TTCTTTTTCT
Found at i:32992188 original size:18 final size:16
Alignment explanation
Indices: 32992167--32992239 Score: 51
Period size: 19 Copynumber: 4.3 Consensus size: 16
32992157 TTATGTCTTC
32992167 TTTTTCTTTCTTTTCCATT
1 TTTTTCTTTCTTTT--A-T
*
32992186 TTTTTCATTCTTTTAT
1 TTTTTCTTTCTTTTAT
* *
32992202 TTTCTCTTT-TTTTTT
1 TTTTTCTTTCTTTTAT
32992217 TATTTTCTTTTTCTTTT-T
1 T-TTTTC--TTTCTTTTAT
32992235 TTTTT
1 TTTTT
32992240 TTTTTACATT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
15 6 0.13
16 12 0.27
17 5 0.11
18 5 0.11
19 17 0.38
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTCTTTTAT
Found at i:32992209 original size:12 final size:10
Alignment explanation
Indices: 32992167--32992244 Score: 59
Period size: 11 Copynumber: 7.2 Consensus size: 10
32992157 TTATGTCTTC
*
32992167 TTTTTCTTTC
1 TTTTTCTTTT
*
32992177 TTTTCCATTTT
1 TTTTTC-TTTT
32992188 TTTCATTCTTTT
1 TTT--TTCTTTT
32992200 ATTTTCTCTTTTT
1 -TTTT-TC-TTTT
*
32992213 TTTTTATTTT
1 TTTTTCTTTT
32992223 CTTTTTCTTTT
1 -TTTTTCTTTT
32992234 TTTTT-TTTT
1 TTTTTCTTTT
32992243 TT
1 TT
32992245 ACATTTTCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
9 6 0.11
10 14 0.25
11 17 0.30
12 10 0.18
13 9 0.16
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:32992211 original size:23 final size:22
Alignment explanation
Indices: 32992185--32992235 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
32992175 TCTTTTCCAT
*
32992185 TTTTTTCATTCTTTTATTTTCTC
1 TTTTTTCATTATTTTATTTT-TC
** *
32992208 TTTTTTTTTTATTTTCTTTTTC
1 TTTTTTCATTATTTTATTTTTC
32992230 TTTTTT
1 TTTTTT
32992236 TTTTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTTTCATTATTTTATTTTTC
Found at i:32992216 original size:28 final size:24
Alignment explanation
Indices: 32992201--32992244 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
32992191 CATTCTTTTA
32992201 TTTTCTCTTTTTTTTTTATTTTCT
1 TTTTCTCTTTTTTTTTTATTTTCT
32992225 TTTTCT-TTTTTTTTTT-TTTT
1 TTTTCTCTTTTTTTTTTATTTT
32992245 ACATTTTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 10 0.50
24 6 0.30
ACGTcount: A:0.02, C:0.09, G:0.00, T:0.89
Consensus pattern (24 bp):
TTTTCTCTTTTTTTTTTATTTTCT
Found at i:32992251 original size:24 final size:24
Alignment explanation
Indices: 32992196--32992261 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 24
32992186 TTTTTCATTC
32992196 TTTT-ATTTTCTCTTTTTTTTTTA
1 TTTTCATTTTCTCTTTTTTTTTTA
*
32992219 TTTTC-TTTT-TCTTTTTTTTTTT
1 TTTTCATTTTCTCTTTTTTTTTTA
* *
32992241 TTTTACATTTTCCCCTTTTTT
1 TTTT-CATTTTCTCTTTTTTT
32992262 CAATTTTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 16 0.44
23 9 0.25
24 4 0.11
25 7 0.19
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTCATTTTCTCTTTTTTTTTTA
Found at i:32992652 original size:21 final size:21
Alignment explanation
Indices: 32992623--32992663 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32992613 GGTATTCATT
*
32992623 TTTTTCTTTCTTTTTCCTTTG
1 TTTTGCTTTCTTTTTCCTTTG
* *
32992644 TTTTGCTTTTTTTTTTCTTT
1 TTTTGCTTTCTTTTTCCTTT
32992664 CTATCTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (21 bp):
TTTTGCTTTCTTTTTCCTTTG
Found at i:32996466 original size:56 final size:56
Alignment explanation
Indices: 32996358--32996465 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 56
32996348 ATTTTTATTT
* * *
32996358 ATTTCTAAATTTTTCATCATTTAGGTCAATTTAGAAATATTTTCTTTTTTTTTGAA
1 ATTTCTAAATTTTTCACCATTTAGGCCAATTTAAAAATATTTTCTTTTTTTTTGAA
* * *
32996414 ATTTCTAAATTTTTCACCATTTGGGCCTATTTAAAAA-ATTTTTTTTTTTTTT
1 ATTTCTAAATTTTTCACCATTTAGGCCAATTTAAAAATATTTTCTTTTTTTTT
32996466 TTTTTGTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 14 0.30
56 32 0.70
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.56
Consensus pattern (56 bp):
ATTTCTAAATTTTTCACCATTTAGGCCAATTTAAAAATATTTTCTTTTTTTTTGAA
Found at i:32996906 original size:15 final size:15
Alignment explanation
Indices: 32996871--32996906 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
32996861 ATATACTCTT
*
32996871 AAAATAAATAAATAC
1 AAAATAAATAAATAA
*
32996886 ATAATAAATAAATAA
1 AAAATAAATAAATAA
32996901 AAAATA
1 AAAATA
32996907 TTACAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATAAATAAATAA
Found at i:32997417 original size:20 final size:19
Alignment explanation
Indices: 32997375--32997417 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
32997365 AAAAGTCACA
*
32997375 AAAAAATTCAATCAACACT
1 AAAAAATTCAATCAAAACT
* *
32997394 AAAAAATTCATTGAAAACT
1 AAAAAATTCAATCAAAACT
*
32997413 GAAAA
1 AAAAA
32997418 GTTTCCAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.14, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAAAATTCAATCAAAACT
Found at i:33007439 original size:20 final size:19
Alignment explanation
Indices: 33007406--33007512 Score: 82
Period size: 20 Copynumber: 5.6 Consensus size: 19
33007396 ACAAAATTAG
*
33007406 TTTTGTTTATTTGAAAAGA
1 TTTTTTTTATTTGAAAAGA
**
33007425 TTTTTTTTATATTGAAGGGA
1 TTTTTTTTAT-TTGAAAAGA
33007445 TTTTTTTATTATTTTG-AAA-A
1 -TTTTTT-TTA-TTTGAAAAGA
*
33007465 ----CTTTATTTGAAAAGA
1 TTTTTTTTATTTGAAAAGA
33007480 TATTTTTTTATTTGAAAAGA
1 T-TTTTTTTATTTGAAAAGA
33007500 TGTTTTTTTATTT
1 T-TTTTTTTATTT
33007513 ATAAGAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 21
0.70 0.08 0.21
Matches are distributed among these distances:
13 4 0.06
14 6 0.09
15 2 0.03
19 9 0.13
20 34 0.49
21 7 0.10
22 6 0.09
23 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (19 bp):
TTTTTTTTATTTGAAAAGA
Found at i:33007518 original size:19 final size:20
Alignment explanation
Indices: 33007466--33007530 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
33007456 TTTTGAAAAC
33007466 TTTATTTGAAAAGATATTTT
1 TTTATTTGAAAAGATATTTT
*
33007486 TTTATTTGAAAAGATGTTTT
1 TTTATTTGAAAAGATATTTT
*
33007506 TTTATTT-ATAAGAATATATTT
1 TTTATTTGAAAAG-ATAT-TTT
33007527 TTTA
1 TTTA
33007531 CTTTCAGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 4 0.10
20 29 0.73
21 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (20 bp):
TTTATTTGAAAAGATATTTT
Found at i:33007598 original size:14 final size:13
Alignment explanation
Indices: 33007579--33007613 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
33007569 TAAATAAAGC
33007579 CAAAAAATAATATA
1 CAAAAAATAATA-A
33007593 CAAAAAAATAATAA
1 C-AAAAAATAATAA
33007607 CAAAAAA
1 CAAAAAA
33007614 ATAAAACGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 3 0.15
15 11 0.55
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (13 bp):
CAAAAAATAATAA
Found at i:33007614 original size:14 final size:15
Alignment explanation
Indices: 33007580--33007617 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
33007570 AAATAAAGCC
33007580 AAAAAATAATATACA
1 AAAAAATAATATACA
33007595 AAAAAATAATA-ACA
1 AAAAAATAATATACA
33007609 AAAAAATAA
1 AAAAAATAA
33007618 AACGGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAAATAATATACA
Found at i:33008107 original size:20 final size:19
Alignment explanation
Indices: 33008075--33008118 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
33008065 TAAACCTAAA
*
33008075 AAAACCCAAAAAATTCAAG
1 AAAACCCAAAAAAATCAAG
* *
33008094 AAAATCCAAGAAAAATCTAG
1 AAAACCCAA-AAAAATCAAG
33008114 AAAAC
1 AAAAC
33008119 TTCCTAGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.64, C:0.18, G:0.07, T:0.11
Consensus pattern (19 bp):
AAAACCCAAAAAAATCAAG
Found at i:33008579 original size:3 final size:3
Alignment explanation
Indices: 33008565--33008604 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
33008555 GTATAAATAC
*
33008565 AAT AAT AA- AAT AAT AA- AA- AAT AAT AAT ATT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
33008605 TACTATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:33008624 original size:17 final size:19
Alignment explanation
Indices: 33008590--33008641 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 19
33008580 AAAAATAATA
33008590 ATATTAATAATAATATACT
1 ATATTAATAATAATATACT
33008609 ATATT-ATAAT-ATATACT
1 ATATTAATAATAATATACT
* *
33008626 ATAATAACAA-AATATA
1 ATATTAATAATAATATA
33008642 AAAGAGACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 11 0.38
18 13 0.45
19 5 0.17
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATTAATAATAATATACT
Found at i:33008632 original size:15 final size:14
Alignment explanation
Indices: 33008584--33008632 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
33008574 ATAATAAAAA
33008584 ATAATAATAT-TA-
1 ATAATAATATATAT
33008596 ATAATAATATACTAT
1 ATAATAATATA-TAT
*
33008611 ATTATAATATATACT
1 ATAATAATATATA-T
33008626 ATAATAA
1 ATAATAA
33008633 CAAAATATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 10 0.32
14 4 0.13
15 17 0.55
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATATATAT
Found at i:33008831 original size:29 final size:29
Alignment explanation
Indices: 33008785--33008850 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
33008775 GAGGCTTGAG
* ** * *
33008785 GTTTGGGGTTTAGGAGTTTAAAGGTTAGC
1 GTTTAGGGTTTAAAAGTTCAAAGGTTAGA
* *
33008814 TTTTAGGGTTTAAAAGTTCAAGGGTTAGA
1 GTTTAGGGTTTAAAAGTTCAAAGGTTAGA
33008843 GTTTAGGG
1 GTTTAGGG
33008851 GTCAAGGTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.03, G:0.35, T:0.38
Consensus pattern (29 bp):
GTTTAGGGTTTAAAAGTTCAAAGGTTAGA
Found at i:33008866 original size:7 final size:7
Alignment explanation
Indices: 33008834--33012953 Score: 7753
Period size: 7 Copynumber: 590.4 Consensus size: 7
33008824 TAAAAGTTCA
33008834 AGGG-TT
1 AGGGTTT
*
33008840 AGAGTTT
1 AGGGTTT
* *
33008847 AGGGGTC
1 AGGGTTT
*
33008854 AAGGTTT
1 AGGGTTT
33008861 AGGGTTT
1 AGGGTTT
*
33008868 AAGGTTT
1 AGGGTTT
* *
33008875 AGAGTTA
1 AGGGTTT
* **
33008882 AAGAATT
1 AGGGTTT
*
33008889 GGGGTTT
1 AGGGTTT
*
33008896 GGGGTTT
1 AGGGTTT
*
33008903 GGGGTTT
1 AGGGTTT
*
33008910 GGGGTTT
1 AGGGTTT
*
33008917 GGGGTTT
1 AGGGTTT
*
33008924 GGGGTTT
1 AGGGTTT
*
33008931 GGGGTTT
1 AGGGTTT
*
33008938 GGGGTTT
1 AGGGTTT
*
33008945 GGGGTTT
1 AGGGTTT
*
33008952 GGGGTTT
1 AGGGTTT
*
33008959 -GGGGTT
1 AGGGTTT
*
33008965 GGGGTTT
1 AGGGTTT
*
33008972 GGGGTTT
1 AGGGTTT
*
33008979 GGGGTTT
1 AGGGTTT
33008986 --GG-TT
1 AGGGTTT
*
33008990 GGGGTTT
1 AGGGTTT
*
33008997 GGGGTTT
1 AGGGTTT
*
33009004 GGGGTTT
1 AGGGTTT
*
33009011 GGGGTTT
1 AGGGTTT
*
33009018 GGGGTTT
1 AGGGTTT
*
33009025 GGGGTTT
1 AGGGTTT
*
33009032 GGGGTTT
1 AGGGTTT
*
33009039 GGGGTTT
1 AGGGTTT
*
33009046 GGGGTTT
1 AGGGTTT
*
33009053 GGGGTTT
1 AGGGTTT
*
33009060 GGGGTTT
1 AGGGTTT
*
33009067 GGGGTTT
1 AGGGTTT
*
33009074 GGGGTTT
1 AGGGTTT
*
33009081 GGGGTTT
1 AGGGTTT
*
33009088 GGGGTTT
1 AGGGTTT
*
33009095 GGGGTTT
1 AGGGTTT
*
33009102 GGGGTTT
1 AGGGTTT
*
33009109 GGGGTTT
1 AGGGTTT
*
33009116 GGGGTTT
1 AGGGTTT
*
33009123 GGGGTTT
1 AGGGTTT
33009130 AGGGTTT
1 AGGGTTT
33009137 AGGGTTT
1 AGGGTTT
33009144 AGGGTTT
1 AGGGTTT
33009151 AGGGTTT
1 AGGGTTT
33009158 AGGGTTT
1 AGGGTTT
33009165 AGGGTTT
1 AGGGTTT
33009172 AGGGTTT
1 AGGGTTT
33009179 AGGGTTT
1 AGGGTTT
33009186 AGGGTTT
1 AGGGTTT
33009193 AGGGTTT
1 AGGGTTT
33009200 AGGGTTT
1 AGGGTTT
33009207 AGGGTTT
1 AGGGTTT
33009214 AGGGTTT
1 AGGGTTT
33009221 AGGGTTT
1 AGGGTTT
33009228 AGGGTTT
1 AGGGTTT
33009235 AGGGTTT
1 AGGGTTT
33009242 AGGGTTT
1 AGGGTTT
33009249 AGGGTTT
1 AGGGTTT
33009256 AGGGTTT
1 AGGGTTT
33009263 AGGGTTT
1 AGGGTTT
33009270 AGGGTTT
1 AGGGTTT
33009277 AGGGTTT
1 AGGGTTT
33009284 AGGGTTT
1 AGGGTTT
33009291 AGGGTTT
1 AGGGTTT
33009298 AGGGTTT
1 AGGGTTT
33009305 AGGGTTT
1 AGGGTTT
33009312 AGGGTTT
1 AGGGTTT
33009319 AGGGTTT
1 AGGGTTT
33009326 AGGGTTT
1 AGGGTTT
33009333 AGGGTTT
1 AGGGTTT
33009340 AGGGTTT
1 AGGGTTT
33009347 AGGGTTT
1 AGGGTTT
33009354 AGGGTTT
1 AGGGTTT
33009361 AGGGTTT
1 AGGGTTT
33009368 AGGGTTT
1 AGGGTTT
33009375 AGGGTTT
1 AGGGTTT
33009382 AGGGTTT
1 AGGGTTT
33009389 AGGGTTT
1 AGGGTTT
33009396 AGGGTTT
1 AGGGTTT
33009403 AGGGTTT
1 AGGGTTT
33009410 AGGGTTT
1 AGGGTTT
33009417 AGGGTTT
1 AGGGTTT
33009424 AGGGTTT
1 AGGGTTT
33009431 AGGGTTT
1 AGGGTTT
33009438 AGGGTTT
1 AGGGTTT
33009445 AGGGTTT
1 AGGGTTT
33009452 AGGGTTT
1 AGGGTTT
33009459 AGGGTTT
1 AGGGTTT
33009466 AGGGTTT
1 AGGGTTT
33009473 AGGGTTT
1 AGGGTTT
33009480 AGGGTTT
1 AGGGTTT
33009487 AGGGTTT
1 AGGGTTT
33009494 AGGGTTT
1 AGGGTTT
33009501 AGGGTTT
1 AGGGTTT
33009508 AGGGTTT
1 AGGGTTT
33009515 AGGGTTT
1 AGGGTTT
33009522 AGGGTTT
1 AGGGTTT
33009529 AGGGTTT
1 AGGGTTT
33009536 AGGGTTT
1 AGGGTTT
33009543 AGGGTTT
1 AGGGTTT
33009550 AGGGTTT
1 AGGGTTT
33009557 AGGGTTT
1 AGGGTTT
33009564 AGGGTTT
1 AGGGTTT
33009571 AGGGTTT
1 AGGGTTT
33009578 AGGGTTT
1 AGGGTTT
33009585 AGGGTTT
1 AGGGTTT
33009592 AGGGTTT
1 AGGGTTT
33009599 AGGGTTT
1 AGGGTTT
33009606 AGGGTTT
1 AGGGTTT
33009613 AGGGTTT
1 AGGGTTT
33009620 AGGGTTT
1 AGGGTTT
33009627 AGGGTTT
1 AGGGTTT
33009634 AGGGTTT
1 AGGGTTT
33009641 AGGGTTT
1 AGGGTTT
33009648 AGGGTTT
1 AGGGTTT
33009655 AGGGTTT
1 AGGGTTT
33009662 AGGGTTT
1 AGGGTTT
33009669 AGGGTTT
1 AGGGTTT
33009676 AGGGTTT
1 AGGGTTT
33009683 AGGGTTT
1 AGGGTTT
33009690 AGGGTTT
1 AGGGTTT
33009697 AGGGTTT
1 AGGGTTT
33009704 AGGGTTT
1 AGGGTTT
33009711 AGGGTTT
1 AGGGTTT
33009718 AGGGTTT
1 AGGGTTT
33009725 AGGGTTT
1 AGGGTTT
33009732 AGGGTTT
1 AGGGTTT
33009739 AGGGTTT
1 AGGGTTT
33009746 AGGGTTT
1 AGGGTTT
33009753 AGGG-TT
1 AGGGTTT
33009759 AGGGTTT
1 AGGGTTT
33009766 AGGGTTT
1 AGGGTTT
33009773 AGGGTTT
1 AGGGTTT
33009780 AGGGTTT
1 AGGGTTT
33009787 AGGGTTT
1 AGGGTTT
33009794 AGGGTTT
1 AGGGTTT
33009801 AGGGTTT
1 AGGGTTT
33009808 AGGGTTT
1 AGGGTTT
33009815 AGGGTTT
1 AGGGTTT
33009822 AGGGTTT
1 AGGGTTT
33009829 AGGGTTT
1 AGGGTTT
33009836 AGGGTTT
1 AGGGTTT
33009843 AGGGTTT
1 AGGGTTT
33009850 AGGGTTT
1 AGGGTTT
33009857 AGGGTTT
1 AGGGTTT
33009864 AGGGTTT
1 AGGGTTT
33009871 AGGGTTT
1 AGGGTTT
33009878 AGGGTTT
1 AGGGTTT
33009885 AGGGTTT
1 AGGGTTT
33009892 AGGGTTT
1 AGGGTTT
33009899 AGGGTTT
1 AGGGTTT
33009906 AGGGTTT
1 AGGGTTT
33009913 AGGGTTT
1 AGGGTTT
33009920 AGGGTTT
1 AGGGTTT
33009927 AGGGTTT
1 AGGGTTT
33009934 AGGGTTT
1 AGGGTTT
33009941 AGGGTTT
1 AGGGTTT
33009948 AGGG-TT
1 AGGGTTT
33009954 AGGGTTT
1 AGGGTTT
33009961 AGGGTTT
1 AGGGTTT
33009968 AGGGTTT
1 AGGGTTT
33009975 AGGGTTT
1 AGGGTTT
33009982 AGGGTTT
1 AGGGTTT
33009989 AGGGTTT
1 AGGGTTT
33009996 AGGGTTT
1 AGGGTTT
33010003 AGGGTTT
1 AGGGTTT
33010010 AGGGTTT
1 AGGGTTT
33010017 AGGGTTT
1 AGGGTTT
33010024 AGGGTTT
1 AGGGTTT
33010031 AGGGTTT
1 AGGGTTT
33010038 AGGGTTT
1 AGGGTTT
33010045 AGGGTTT
1 AGGGTTT
33010052 AGGGTTT
1 AGGGTTT
33010059 AGGGTTT
1 AGGGTTT
33010066 AGGGTTT
1 AGGGTTT
33010073 AGGGTTT
1 AGGGTTT
33010080 AGGGTTT
1 AGGGTTT
33010087 AGGGTTT
1 AGGGTTT
33010094 AGGGTTT
1 AGGGTTT
33010101 AGGGTTT
1 AGGGTTT
33010108 AGGGTTT
1 AGGGTTT
33010115 AGGGTTT
1 AGGGTTT
33010122 AGGGTTT
1 AGGGTTT
33010129 AGGGTTT
1 AGGGTTT
33010136 AGGGTTT
1 AGGGTTT
33010143 AGGGTTT
1 AGGGTTT
33010150 AGGGTTT
1 AGGGTTT
33010157 AGGGTTT
1 AGGGTTT
33010164 AGGGTTT
1 AGGGTTT
33010171 AGGGTTT
1 AGGGTTT
33010178 AGGGTTT
1 AGGGTTT
33010185 AGGGTTT
1 AGGGTTT
33010192 AGGGTTT
1 AGGGTTT
33010199 AGGGTTT
1 AGGGTTT
33010206 AGGGTTT
1 AGGGTTT
33010213 AGGGTTT
1 AGGGTTT
33010220 AGGGTTT
1 AGGGTTT
33010227 AGGGTTT
1 AGGGTTT
33010234 AGGGTTT
1 AGGGTTT
33010241 AGGGTTT
1 AGGGTTT
33010248 AGGGTTT
1 AGGGTTT
33010255 AGGGTTT
1 AGGGTTT
33010262 AGGGTTT
1 AGGGTTT
33010269 AGGGTTT
1 AGGGTTT
33010276 AGGGTTT
1 AGGGTTT
33010283 AGGGTTT
1 AGGGTTT
33010290 AGGGTTT
1 AGGGTTT
33010297 AGGGTTT
1 AGGGTTT
33010304 AGGGTTT
1 AGGGTTT
33010311 AGGGTTT
1 AGGGTTT
33010318 AGGGTTT
1 AGGGTTT
33010325 AGGGTTT
1 AGGGTTT
33010332 AGGGTTT
1 AGGGTTT
33010339 AGGGTTT
1 AGGGTTT
33010346 AGGGTTT
1 AGGGTTT
33010353 AGGGTTT
1 AGGGTTT
33010360 AGGGTTT
1 AGGGTTT
33010367 AGGGTTT
1 AGGGTTT
33010374 AGGGTTT
1 AGGGTTT
33010381 AGGGTTT
1 AGGGTTT
33010388 AGGGTTT
1 AGGGTTT
33010395 AGGGTTT
1 AGGGTTT
33010402 AGGGTTT
1 AGGGTTT
33010409 AGGGTTT
1 AGGGTTT
33010416 AGGGTTT
1 AGGGTTT
33010423 AGGGTTT
1 AGGGTTT
33010430 AGGGTTT
1 AGGGTTT
33010437 AGGGTTT
1 AGGGTTT
33010444 AGGGTTT
1 AGGGTTT
33010451 AGGGTTT
1 AGGGTTT
33010458 AGGGTTT
1 AGGGTTT
33010465 AGGGTTT
1 AGGGTTT
33010472 AGGGTTT
1 AGGGTTT
33010479 AGGGTTT
1 AGGGTTT
33010486 AGGGTTT
1 AGGGTTT
33010493 AGGGTTT
1 AGGGTTT
33010500 AGGGTTT
1 AGGGTTT
33010507 AGGGTTT
1 AGGGTTT
33010514 AGGGTTT
1 AGGGTTT
33010521 AGGGTTT
1 AGGGTTT
33010528 AGGGTTT
1 AGGGTTT
33010535 AGGGTTT
1 AGGGTTT
33010542 AGGGTTT
1 AGGGTTT
33010549 AGGGTTT
1 AGGGTTT
33010556 AGGGTTT
1 AGGGTTT
33010563 AGGGTTT
1 AGGGTTT
33010570 AGGGTTT
1 AGGGTTT
33010577 AGGGTTT
1 AGGGTTT
33010584 AGGGTTT
1 AGGGTTT
33010591 AGGGTTT
1 AGGGTTT
33010598 AGGGTTT
1 AGGGTTT
33010605 AGGGTTT
1 AGGGTTT
33010612 AGGGTTT
1 AGGGTTT
33010619 AGGGTTT
1 AGGGTTT
33010626 AGGGTTT
1 AGGGTTT
33010633 AGGGTTT
1 AGGGTTT
33010640 AGGGTTT
1 AGGGTTT
33010647 AGGGTTT
1 AGGGTTT
33010654 AGGGTTT
1 AGGGTTT
33010661 AGGGTTT
1 AGGGTTT
33010668 AGGGTTT
1 AGGGTTT
33010675 AGGGTTT
1 AGGGTTT
33010682 AGGGTTT
1 AGGGTTT
33010689 AGGGTTT
1 AGGGTTT
33010696 AGGGTTT
1 AGGGTTT
33010703 AGGGTTT
1 AGGGTTT
33010710 AGGGTTT
1 AGGGTTT
33010717 AGGGTTT
1 AGGGTTT
33010724 AGGGTTT
1 AGGGTTT
33010731 AGGGTTT
1 AGGGTTT
33010738 AGGGTTT
1 AGGGTTT
33010745 AGGGTTT
1 AGGGTTT
33010752 AGGGTTT
1 AGGGTTT
33010759 AGGGTTT
1 AGGGTTT
33010766 AGGGTTT
1 AGGGTTT
33010773 AGGGTTT
1 AGGGTTT
33010780 AGGGTTT
1 AGGGTTT
33010787 AGGGTTT
1 AGGGTTT
33010794 AGGGTTT
1 AGGGTTT
33010801 AGGGTTT
1 AGGGTTT
33010808 AGGGTTT
1 AGGGTTT
33010815 AGGGTTT
1 AGGGTTT
33010822 AGGGTTT
1 AGGGTTT
33010829 AGGGTTT
1 AGGGTTT
33010836 AGGGTTT
1 AGGGTTT
33010843 AGGGTTT
1 AGGGTTT
33010850 AGGGTTT
1 AGGGTTT
33010857 AGGGTTT
1 AGGGTTT
33010864 AGGGTTT
1 AGGGTTT
33010871 AGGGTTT
1 AGGGTTT
33010878 AGGGTTT
1 AGGGTTT
33010885 AGGGTTT
1 AGGGTTT
33010892 AGGGTTT
1 AGGGTTT
33010899 AGGGTTT
1 AGGGTTT
33010906 AGGGTTT
1 AGGGTTT
33010913 AGGGTTT
1 AGGGTTT
33010920 AGGGTTT
1 AGGGTTT
33010927 AGGGTTT
1 AGGGTTT
33010934 AGGGTTT
1 AGGGTTT
33010941 AGGGTTT
1 AGGGTTT
33010948 AGGGTTT
1 AGGGTTT
33010955 AGGGTTT
1 AGGGTTT
33010962 AGGGTTT
1 AGGGTTT
33010969 AGGGTTT
1 AGGGTTT
33010976 AGGGTTT
1 AGGGTTT
33010983 AGGGTTT
1 AGGGTTT
33010990 AGGGTTT
1 AGGGTTT
33010997 AGGGTTT
1 AGGGTTT
33011004 AGGGTTT
1 AGGGTTT
33011011 AGGGTTT
1 AGGGTTT
33011018 AGGGTTT
1 AGGGTTT
33011025 AGGGTTT
1 AGGGTTT
33011032 AGGGTTT
1 AGGGTTT
33011039 AGGGTTT
1 AGGGTTT
33011046 AGGGTTT
1 AGGGTTT
33011053 AGGGTTT
1 AGGGTTT
33011060 AGGGTTT
1 AGGGTTT
33011067 AGGGTTT
1 AGGGTTT
33011074 AGGGTTT
1 AGGGTTT
33011081 AGGGTTT
1 AGGGTTT
33011088 AGGGTTT
1 AGGGTTT
33011095 AGGGTTT
1 AGGGTTT
33011102 AGGGTTT
1 AGGGTTT
33011109 AGGGTTT
1 AGGGTTT
33011116 AGGGTTT
1 AGGGTTT
33011123 AGGGTTT
1 AGGGTTT
33011130 AGGGTTT
1 AGGGTTT
33011137 AGGGTTT
1 AGGGTTT
33011144 AGGGTTT
1 AGGGTTT
33011151 AGGGTTT
1 AGGGTTT
33011158 AGGGTTT
1 AGGGTTT
33011165 AGGGTTT
1 AGGGTTT
33011172 AGGGTTT
1 AGGGTTT
33011179 AGGGTTT
1 AGGGTTT
33011186 AGGGTTT
1 AGGGTTT
33011193 AGGGTTT
1 AGGGTTT
33011200 AGGGTTT
1 AGGGTTT
33011207 AGGGTTT
1 AGGGTTT
33011214 AGGGTTT
1 AGGGTTT
33011221 AGGGTTT
1 AGGGTTT
33011228 AGGGTTT
1 AGGGTTT
33011235 AGGGTTT
1 AGGGTTT
33011242 AGGGTTT
1 AGGGTTT
33011249 AGGGTTT
1 AGGGTTT
33011256 AGGGTTT
1 AGGGTTT
33011263 AGGGTTT
1 AGGGTTT
33011270 AGGGTTT
1 AGGGTTT
33011277 AGGGTTT
1 AGGGTTT
33011284 AGGGTTT
1 AGGGTTT
33011291 AGGGTTT
1 AGGGTTT
33011298 AGGGTTT
1 AGGGTTT
33011305 AGGGTTT
1 AGGGTTT
33011312 AGGGTTT
1 AGGGTTT
33011319 AGGGTTT
1 AGGGTTT
33011326 AGGGTTT
1 AGGGTTT
33011333 AGGGTTT
1 AGGGTTT
33011340 AGGGTTT
1 AGGGTTT
33011347 AGGGTTT
1 AGGGTTT
33011354 AGGGTTT
1 AGGGTTT
33011361 AGGGTTT
1 AGGGTTT
33011368 AGGGTTT
1 AGGGTTT
33011375 AGGGTTT
1 AGGGTTT
33011382 AGGGTTT
1 AGGGTTT
33011389 AGGG-TT
1 AGGGTTT
33011395 AGGGTTT
1 AGGGTTT
33011402 AGGGTTT
1 AGGGTTT
33011409 AGGGTTT
1 AGGGTTT
33011416 AGGGTTT
1 AGGGTTT
33011423 AGGGTTT
1 AGGGTTT
33011430 AGGGTTT
1 AGGGTTT
33011437 AGGGTTT
1 AGGGTTT
33011444 AGGGTTT
1 AGGGTTT
33011451 AGGGTTT
1 AGGGTTT
33011458 AGGGTTT
1 AGGGTTT
33011465 AGGGTTT
1 AGGGTTT
33011472 AGGGTTT
1 AGGGTTT
33011479 AGGGTTT
1 AGGGTTT
33011486 AGGGTTT
1 AGGGTTT
33011493 AGGGTTT
1 AGGGTTT
33011500 AGGGTTT
1 AGGGTTT
33011507 AGGGTTT
1 AGGGTTT
33011514 AGGGTTT
1 AGGGTTT
33011521 AGGGTTT
1 AGGGTTT
33011528 AGGGTTT
1 AGGGTTT
33011535 AGGGTTT
1 AGGGTTT
33011542 AGGGTTT
1 AGGGTTT
33011549 AGGGTTT
1 AGGGTTT
33011556 AGGGTTT
1 AGGGTTT
33011563 AGGGTTT
1 AGGGTTT
33011570 AGGGTTT
1 AGGGTTT
33011577 AGGGTTT
1 AGGGTTT
33011584 AGGGTTT
1 AGGGTTT
33011591 AGGGTTT
1 AGGGTTT
33011598 AGGGTTT
1 AGGGTTT
33011605 AGGGTTT
1 AGGGTTT
33011612 AGGGTTT
1 AGGGTTT
33011619 AGGGTTT
1 AGGGTTT
33011626 AGGGTTT
1 AGGGTTT
33011633 AGGGTTT
1 AGGGTTT
33011640 AGGGTTT
1 AGGGTTT
33011647 AGGGTTT
1 AGGGTTT
33011654 AGGGTTT
1 AGGGTTT
33011661 AGGGTTT
1 AGGGTTT
33011668 AGGGTTT
1 AGGGTTT
33011675 AGGGTTT
1 AGGGTTT
33011682 AGGGTTT
1 AGGGTTT
33011689 AGGGTTT
1 AGGGTTT
33011696 AGGGTTT
1 AGGGTTT
33011703 AGGGTTT
1 AGGGTTT
33011710 AGGGTTT
1 AGGGTTT
33011717 AGGGTTT
1 AGGGTTT
33011724 AGGGTTT
1 AGGGTTT
33011731 AGGGTTT
1 AGGGTTT
33011738 AGGGTTT
1 AGGGTTT
33011745 AGGGTTT
1 AGGGTTT
33011752 AGGGTTT
1 AGGGTTT
33011759 AGGGTTT
1 AGGGTTT
33011766 AGGGTTT
1 AGGGTTT
33011773 AGGGTTT
1 AGGGTTT
33011780 AGGGTTT
1 AGGGTTT
33011787 AGGGTTT
1 AGGGTTT
33011794 AGGGTTT
1 AGGGTTT
33011801 AGGGTTT
1 AGGGTTT
33011808 AGGGTTT
1 AGGGTTT
33011815 AGGGTTT
1 AGGGTTT
33011822 AGGGTTT
1 AGGGTTT
33011829 AGGGTTT
1 AGGGTTT
33011836 AGGGTTT
1 AGGGTTT
33011843 AGGGTTT
1 AGGGTTT
33011850 AGGGTTT
1 AGGGTTT
33011857 AGGGTTT
1 AGGGTTT
33011864 AGGGTTT
1 AGGGTTT
33011871 AGGGTTT
1 AGGGTTT
33011878 AGGGTTT
1 AGGGTTT
33011885 AGGGTTT
1 AGGGTTT
33011892 AGGGTTT
1 AGGGTTT
33011899 AGGGTTT
1 AGGGTTT
33011906 AGGGTTT
1 AGGGTTT
33011913 AGGGTTT
1 AGGGTTT
33011920 AGGGTTT
1 AGGGTTT
33011927 AGGGTTT
1 AGGGTTT
33011934 AGGGTTT
1 AGGGTTT
33011941 AGGGTTT
1 AGGGTTT
33011948 AGGGTTT
1 AGGGTTT
33011955 AGGGTTT
1 AGGGTTT
33011962 AGGGTTT
1 AGGGTTT
33011969 AGGGTTT
1 AGGGTTT
33011976 AGGGTTT
1 AGGGTTT
33011983 AGGGTTT
1 AGGGTTT
33011990 AGGGTTT
1 AGGGTTT
33011997 AGGGTTT
1 AGGGTTT
33012004 AGGGTTT
1 AGGGTTT
33012011 AGGGTTT
1 AGGGTTT
33012018 AGGGTTT
1 AGGGTTT
33012025 AGGGTTT
1 AGGGTTT
33012032 AGGGTTT
1 AGGGTTT
33012039 AGGG-TT
1 AGGGTTT
33012045 AGGGTTT
1 AGGGTTT
33012052 AGGGTTT
1 AGGGTTT
33012059 AGGGTTT
1 AGGGTTT
33012066 AGGGTTT
1 AGGGTTT
33012073 AGGGTTT
1 AGGGTTT
33012080 AGGGTTT
1 AGGGTTT
33012087 AGGGTTT
1 AGGGTTT
33012094 AGGGTTT
1 AGGGTTT
33012101 AGGGTTT
1 AGGGTTT
33012108 AGGGTTT
1 AGGGTTT
33012115 AGGGTTT
1 AGGGTTT
33012122 AGGGTTT
1 AGGGTTT
33012129 AGGGTTT
1 AGGGTTT
33012136 AGGGTTT
1 AGGGTTT
33012143 AGGGTTT
1 AGGGTTT
33012150 AGGGTTT
1 AGGGTTT
33012157 AGGGTTT
1 AGGGTTT
33012164 AGGGTTT
1 AGGGTTT
33012171 AGGG-TT
1 AGGGTTT
33012177 AGGGTTT
1 AGGGTTT
33012184 AGGGTTT
1 AGGGTTT
33012191 AGGGTTT
1 AGGGTTT
33012198 AGGGTTT
1 AGGGTTT
33012205 AGGGTTT
1 AGGGTTT
33012212 AGGGTTT
1 AGGGTTT
33012219 AGGGTTT
1 AGGGTTT
33012226 AGGGTTT
1 AGGGTTT
33012233 AGGGTTT
1 AGGGTTT
33012240 AGGGTTT
1 AGGGTTT
33012247 AGGGTTT
1 AGGGTTT
33012254 AGGGTTT
1 AGGGTTT
33012261 AGGGTTT
1 AGGGTTT
33012268 AGGG-TT
1 AGGGTTT
33012274 AGGGTTT
1 AGGGTTT
33012281 AGGGTTT
1 AGGGTTT
33012288 AGGGTTT
1 AGGGTTT
33012295 AGGGTTT
1 AGGGTTT
33012302 AGGGTTT
1 AGGGTTT
33012309 AGGGTTT
1 AGGGTTT
33012316 AGGGTTT
1 AGGGTTT
33012323 AGGGTTT
1 AGGGTTT
33012330 AGGGTTT
1 AGGGTTT
33012337 AGGGTTT
1 AGGGTTT
33012344 AGGGTTT
1 AGGGTTT
33012351 AGGGTTT
1 AGGGTTT
33012358 AGGGTTT
1 AGGGTTT
33012365 AGGGTTT
1 AGGGTTT
33012372 AGGGTTT
1 AGGGTTT
33012379 AGGGTTT
1 AGGGTTT
33012386 AGGGTTT
1 AGGGTTT
33012393 AGGG-TT
1 AGGGTTT
33012399 AGGGTTT
1 AGGGTTT
33012406 AGGGTTT
1 AGGGTTT
33012413 AGGGTTT
1 AGGGTTT
33012420 AGGGTTT
1 AGGGTTT
33012427 AGGGTTT
1 AGGGTTT
33012434 AGGGTTT
1 AGGGTTT
33012441 AGGGTTT
1 AGGGTTT
33012448 AGGGTTT
1 AGGGTTT
33012455 AGGGTTT
1 AGGGTTT
33012462 AGGGTTT
1 AGGGTTT
33012469 AGGGTTT
1 AGGGTTT
33012476 AGGG-TT
1 AGGGTTT
33012482 AGGGTTT
1 AGGGTTT
33012489 AGGGTTT
1 AGGGTTT
33012496 AGGGTTT
1 AGGGTTT
33012503 AGGGTTT
1 AGGGTTT
33012510 AGGGTTT
1 AGGGTTT
33012517 AGGGTTT
1 AGGGTTT
33012524 AGGGTTT
1 AGGGTTT
33012531 AGGGTTT
1 AGGGTTT
33012538 AGGGTTT
1 AGGGTTT
33012545 AGGGTTT
1 AGGGTTT
33012552 AGGGTTT
1 AGGGTTT
33012559 AGGGTTT
1 AGGGTTT
33012566 AGGGTTT
1 AGGGTTT
33012573 AGGGTTT
1 AGGGTTT
33012580 AGGGTTT
1 AGGGTTT
33012587 AGGGTTT
1 AGGGTTT
33012594 AGGGTTT
1 AGGGTTT
33012601 AGGGTTT
1 AGGGTTT
33012608 AGGGTTT
1 AGGGTTT
33012615 AGGGTTT
1 AGGGTTT
33012622 AGGGTTT
1 AGGGTTT
33012629 AGGGTTT
1 AGGGTTT
33012636 AGGGTTT
1 AGGGTTT
33012643 AGGGTTT
1 AGGGTTT
33012650 AGGGTTT
1 AGGGTTT
33012657 AGGGTTT
1 AGGGTTT
33012664 AGGGTTT
1 AGGGTTT
33012671 AGGGTTT
1 AGGGTTT
33012678 AGGGTTT
1 AGGGTTT
33012685 AGGGTTT
1 AGGGTTT
33012692 AGGGTTT
1 AGGGTTT
33012699 AGGGTTT
1 AGGGTTT
33012706 AGGGTTT
1 AGGGTTT
33012713 AGGGTTT
1 AGGGTTT
33012720 AGGGTTT
1 AGGGTTT
33012727 AGGGTTT
1 AGGGTTT
33012734 AGGGTTT
1 AGGGTTT
33012741 AGGGTTT
1 AGGGTTT
33012748 AGGGTTT
1 AGGGTTT
33012755 AGGGTTT
1 AGGGTTT
33012762 AGGGTTT
1 AGGGTTT
33012769 AGGGTTT
1 AGGGTTT
33012776 AGGGTTT
1 AGGGTTT
33012783 AGGGTTT
1 AGGGTTT
33012790 AGGGTTT
1 AGGGTTT
33012797 AGGGTTT
1 AGGGTTT
33012804 AGGGTTT
1 AGGGTTT
33012811 AGGGTTT
1 AGGGTTT
33012818 AGGGTTT
1 AGGGTTT
33012825 AGGGTTT
1 AGGGTTT
33012832 AGGGTTT
1 AGGGTTT
33012839 AGGGTTT
1 AGGGTTT
33012846 AGGGTTT
1 AGGGTTT
33012853 AGGGTTT
1 AGGGTTT
33012860 AGGGTTT
1 AGGGTTT
33012867 AGGGTTT
1 AGGGTTT
33012874 AGGGTTT
1 AGGGTTT
33012881 AGGGTTT
1 AGGGTTT
33012888 AGGGTTT
1 AGGGTTT
33012895 AGGGTTT
1 AGGGTTT
33012902 AGGGTTT
1 AGGGTTT
33012909 AGGGTTT
1 AGGGTTT
33012916 AGGGTTT
1 AGGGTTT
33012923 AGGGTTT
1 AGGGTTT
33012930 AGGGTTT
1 AGGGTTT
33012937 AGGGTTT
1 AGGGTTT
33012944 AGGGTTT
1 AGGGTTT
33012951 AGG
1 AGG
Statistics
Matches: 4077, Mismatches: 24, Indels: 25
0.99 0.01 0.01
Matches are distributed among these distances:
4 2 0.00
5 2 0.00
6 58 0.01
7 4015 0.98
ACGTcount: A:0.14, C:0.00, G:0.44, T:0.43
Consensus pattern (7 bp):
AGGGTTT
Done.