Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 27 of 160
Found at i:6971701 original size:58 final size:56
Alignment explanation
Indices: 6971637--6972034 Score: 424
Period size: 58 Copynumber: 6.7 Consensus size: 56
6971627 CTTGTGCAGA
*
6971637 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTCTTTTGAAACTTTAATTTCGAG
1 AAAAATTGATACTTTCAAC-TTTTCCCAAAAATATT-TTTTGAAACTTTATTTTCGAG
6971695 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTTATTTTCGAG
1 AAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTG-AAAC-TTTATTTTCGAG
*
6971754 AAAAATTGATACTTTCAACTTTTCCCGAAAATATTTTTTGGAAACTTTGATTTTCGAG
1 AAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTT-GAAACTTT-ATTTTCGAG
* * **
6971812 AAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAAACTTTTTTGAAAATTTATTTTTAAG
1 AAAAATTGATACTTTCAACTTTTCC-C----AAAAATA-TTTTTTGAAACTTTATTTTCGAG
* *
6971874 AAAAATTGATACTTTTAACTTTTTCCCAAAAATA-TTTTTGAAAACTTTGATTTTCAAG
1 AAAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTG-AAACTTT-ATTTTCGAG
* * * *
6971932 AAAAATTGATACTTTCAACTTTTCCTAAAAAAACTTTTTTTTTTTGAAAATTTATTTT-TA-
1 AAAAATTGATACTTTCAACTTTTCC--CAAAAA----TATTTTTTGAAACTTTATTTTCGAG
**
6971992 AAGACAATTGATACTTTCAACTTTTTTTCAAAAATATTTTTTG
1 AA-A-AATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTG
6972035 GATTTTATTT
Statistics
Matches: 296, Mismatches: 20, Indels: 49
0.81 0.05 0.13
Matches are distributed among these distances:
56 6 0.02
57 32 0.11
58 120 0.41
59 41 0.14
60 2 0.01
61 7 0.02
62 47 0.16
63 29 0.10
64 12 0.04
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (56 bp):
AAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAACTTTATTTTCGAG
Found at i:6971912 original size:120 final size:119
Alignment explanation
Indices: 6971637--6972032 Score: 520
Period size: 120 Copynumber: 3.3 Consensus size: 119
6971627 CTTGTGCAGA
* *
6971637 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTCTTTTGAAACTTT-AATTTCGAGAAAAAT
1 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATT-TTTGGAAACTTTGATTTTCGAGAAAAAT
* **
6971701 TGATACTTTCAACTTTTCC-C---CAAAAATATTTTTTGAAAACTTTTATTTTCGAG
65 TGATACTTTCAACTTTTCCTCAAAAAAAAATATTTTTTGAAAA--TTTATTTTTAAG
*
6971754 AAAAATTGATACTTTCAAC-TTTTCCCGAAAATATTTTTTGGAAACTTTGATTTTCGAGAAAAAT
1 AAAAATTGATACTTTCAACTTTTTCCCAAAAATA-TTTTTGGAAACTTTGATTTTCGAGAAAAAT
*
6971818 TGATACTTTCAACTTTTCCTCAAAAAAAAAAACTTTTTTGAAAATTTATTTTTAAG
65 TGATACTTTCAACTTTTCCTCAAAAAAAAATA-TTTTTTGAAAATTTATTTTTAAG
* * *
6971874 AAAAATTGATACTTTTAACTTTTTCCCAAAAATATTTTTGAAAACTTTGATTTTCAAGAAAAATT
1 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTGGAAACTTTGATTTTCGAGAAAAATT
** *
6971939 GATACTTTCAACTTTTCCT-AAAAAAACTTTTTTTTTTTGAAAATTTATTTTTAA-
66 GATACTTTCAACTTTTCCTCAAAAAAA--AATATTTTTTGAAAATTTATTTTTAAG
* **
6971993 AGACAATTGATACTTTCAACTTTTTTTCAAAAATATTTTT
1 A-AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTT
6972033 TGGATTTTAT
Statistics
Matches: 249, Mismatches: 19, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
116 24 0.10
117 54 0.22
118 1 0.00
119 8 0.03
120 132 0.53
121 19 0.08
122 11 0.04
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (119 bp):
AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTGGAAACTTTGATTTTCGAGAAAAATT
GATACTTTCAACTTTTCCTCAAAAAAAAATATTTTTTGAAAATTTATTTTTAAG
Found at i:6972101 original size:21 final size:20
Alignment explanation
Indices: 6972061--6972113 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
6972051 AATAAAATAA
*
6972061 TAAAACAAAATAAAATAAAAG
1 TAAAACAAAA-AAAAGAAAAG
*
6972082 TGAAAATAAAAAAAAGAAAAG
1 T-AAAACAAAAAAAAGAAAAG
6972103 TAAAACAAAAA
1 TAAAACAAAAA
6972114 TAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 11 0.39
22 8 0.29
ACGTcount: A:0.77, C:0.04, G:0.08, T:0.11
Consensus pattern (20 bp):
TAAAACAAAAAAAAGAAAAG
Found at i:6972133 original size:6 final size:5
Alignment explanation
Indices: 6972045--6972148 Score: 81
Period size: 5 Copynumber: 20.4 Consensus size: 5
6972035 GATTTTATTT
*
6972045 AAATA AAATA AAAT- -AATA AAACA AAATA AAATA AAAGTGA AAATA AAA-A
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA-T-A AAATA AAATA
* * * *
6972094 AAAGA AAAGTA AAACAA AAATAA AAATA AAATA AAGATA AAA-A ACATT
1 AAATA AAA-TA AAA-TA AAAT-A AAATA AAATA AA-ATA AAATA AAATA
6972142 AAATA AA
1 AAATA AA
6972149 CCTAATCTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
3 3 0.04
4 7 0.09
5 46 0.57
6 20 0.25
7 4 0.05
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (5 bp):
AAATA
Found at i:6972133 original size:17 final size:16
Alignment explanation
Indices: 6972045--6972136 Score: 80
Period size: 17 Copynumber: 5.6 Consensus size: 16
6972035 GATTTTATTT
6972045 AAAT-AAAATAAAATA
1 AAATAAAAATAAAATA
*
6972060 ATAAAACAAAATAAAATA
1 A-AATA-AAAATAAAATA
*
6972078 AAAGTGAAAATAAAA-A
1 AAA-TAAAAATAAAATA
* * *
6972094 AAAGAAAAGTAAAACAA
1 AAATAAAAATAAAA-TA
6972111 AAATAAAAATAAAATA
1 AAATAAAAATAAAATA
6972127 AAGATAAAAA
1 AA-ATAAAAA
6972137 ACATTAAATA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
15 9 0.15
16 9 0.15
17 31 0.51
18 12 0.20
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.14
Consensus pattern (16 bp):
AAATAAAAATAAAATA
Found at i:6972836 original size:21 final size:20
Alignment explanation
Indices: 6972812--6972858 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
6972802 AACCTTTAAA
*
6972812 TCTTCTCTGTATCTCTTTTTC
1 TCTTCTCGGTATC-CTTTTTC
*
6972833 TCTTAATCGGTATCCTTTTTC
1 TCTT-CTCGGTATCCTTTTTC
6972854 -CTTCT
1 TCTTCT
6972859 GTTTTCTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.05
20 3 0.14
21 11 0.50
22 7 0.32
ACGTcount: A:0.09, C:0.28, G:0.06, T:0.57
Consensus pattern (20 bp):
TCTTCTCGGTATCCTTTTTC
Found at i:6973079 original size:21 final size:22
Alignment explanation
Indices: 6973046--6973089 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
6973036 AAATCAGATG
6973046 AAAATAAATCAGATAAATCAAA
1 AAAATAAATCAGATAAATCAAA
* *
6973068 AAAATTAA-CAGATAAATTAAA
1 AAAATAAATCAGATAAATCAAA
6973089 A
1 A
6973090 TTAAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAATAAATCAGATAAATCAAA
Found at i:6973241 original size:17 final size:15
Alignment explanation
Indices: 6973195--6973289 Score: 52
Period size: 15 Copynumber: 5.9 Consensus size: 15
6973185 AATACCTAAG
*
6973195 ATAAAAATAAAAAAT
1 ATAATAATAAAAAAT
6973210 ATATATATATAAAAACA-
1 ATA-ATA-ATAAAAA-AT
6973227 ATAATAATAATAAAATT
1 ATAATAATAA-AAAA-T
*
6973244 AAAATTAA-AATTAAAAT
1 ATAA-TAATAA--AAAAT
*
6973261 AAAATAA-AATAAAAT
1 ATAATAATAA-AAAAT
*
6973276 AAAATAATAAAAAA
1 ATAATAATAAAAAA
6973290 AAAGAATATA
Statistics
Matches: 69, Mismatches: 2, Indels: 18
0.78 0.02 0.20
Matches are distributed among these distances:
15 25 0.36
16 15 0.22
17 20 0.29
18 9 0.13
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (15 bp):
ATAATAATAAAAAAT
Found at i:6973265 original size:5 final size:5
Alignment explanation
Indices: 6973229--6973303 Score: 73
Period size: 5 Copynumber: 14.6 Consensus size: 5
6973219 TAAAAACAAT
6973229 AATAA TAATAA AATTAA AATTAA AATTAA AATAA AATAA AATAA AATAA
1 AATAA -AATAA AA-TAA AA-TAA AA-TAA AATAA AATAA AATAA AATAA
* * *
6973278 AAT-- AATAA AAAAA AAGAA TATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
6973304 TTACCTATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
3 3 0.05
5 36 0.59
6 22 0.36
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:6973284 original size:23 final size:23
Alignment explanation
Indices: 6973218--6973303 Score: 79
Period size: 23 Copynumber: 3.7 Consensus size: 23
6973208 ATATATATAT
*
6973218 ATAAAA-ACAATAATAATAATAAA
1 ATAAAATAAAATAA-AATAATAAA
*
6973241 ATTAAAATTAAAAT-TAA-AATAAA
1 A-TAAAA-TAAAATAAAATAATAAA
6973264 ATAAAATAAAATAAAATAATAAA
1 ATAAAATAAAATAAAATAATAAA
* * *
6973287 AAAAAAGAATATAAAAT
1 ATAAAATAAAATAAAAT
6973304 TTACCTATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
21 6 0.12
22 7 0.13
23 28 0.54
24 7 0.13
26 4 0.08
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.23
Consensus pattern (23 bp):
ATAAAATAAAATAAAATAATAAA
Found at i:6978743 original size:65 final size:65
Alignment explanation
Indices: 6978639--6978770 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
6978629 TAATCAAAAC
6978639 TTGTGCTAAATGCATATATATATATATATATATTAAAAGAGAAAGGTCTAACAATTTGAACCTTT
1 TTGTGCTAAATGCATATATATATATATATATATTAAAAGAGAAAGGTCTAACAATTTGAACCTTT
6978704 TTGTGCTAAATGCATATATATATATATATATATTAAAAGAGAAAGGTCTAACAATTTGAACCTTT
1 TTGTGCTAAATGCATATATATATATATATATATTAAAAGAGAAAGGTCTAACAATTTGAACCTTT
6978769 TT
1 TT
6978771 TCATTCAACA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (65 bp):
TTGTGCTAAATGCATATATATATATATATATATTAAAAGAGAAAGGTCTAACAATTTGAACCTTT
Found at i:6980324 original size:30 final size:30
Alignment explanation
Indices: 6980284--6980349 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
6980274 TTTATCTCAT
* * *
6980284 TTAA-AAAAAAAAATCTATCACATATATATA
1 TTAATAAAAAATAATCAAGCACA-ATATATA
*
6980314 TTAATAAAAAATAATCAAGCACAATATATG
1 TTAATAAAAAATAATCAAGCACAATATATA
6980344 TTAATA
1 TTAATA
6980350 CAATCAAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (30 bp):
TTAATAAAAAATAATCAAGCACAATATATA
Found at i:6980704 original size:18 final size:18
Alignment explanation
Indices: 6980677--6980714 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6980667 ATAGAAATCT
6980677 AAAATAAAATAAT-TGAA
1 AAAATAAAATAATATGAA
*
6980694 AAAATTAAAATCATATGAA
1 AAAA-TAAAATAATATGAA
6980713 AA
1 AA
6980715 CAAGAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 8 0.44
19 6 0.33
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAATAAAATAATATGAA
Found at i:6983318 original size:7 final size:7
Alignment explanation
Indices: 6983309--6983360 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
6983299 TTAAAAACTT
*
6983309 AAAATAT
1 AAAATAA
*
6983316 AAAATGAT
1 AAAAT-AA
6983324 AAAATAA
1 AAAATAA
6983331 AAAA-ATA
1 AAAATA-A
6983338 AAAATAA
1 AAAATAA
6983345 AAAATAA
1 AAAATAA
6983352 AAAATAA
1 AAAATAA
6983359 AA
1 AA
6983361 CCTTCAATCA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
6 1 0.02
7 32 0.78
8 8 0.20
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (7 bp):
AAAATAA
Found at i:6983332 original size:13 final size:14
Alignment explanation
Indices: 6983269--6983360 Score: 64
Period size: 14 Copynumber: 6.5 Consensus size: 14
6983259 TTTAAAAATC
*
6983269 AATAAAATAAA-ATA
1 AATAAAA-AAATAAA
*
6983283 AATAACAAAAATGAA
1 AATAA-AAAAATAAA
* **
6983298 ATTAAAAACTTAAA
1 AATAAAAAAATAAA
**
6983312 ATATAAAATGAT-AA
1 A-ATAAAAAAATAAA
6983326 AATAAAAAAATAAA
1 AATAAAAAAATAAA
6983340 AAT-AAAAAATAAAA
1 AATAAAAAAAT-AAA
6983354 AATAAAA
1 AATAAAA
6983361 CCTTCAATCA
Statistics
Matches: 60, Mismatches: 12, Indels: 11
0.72 0.14 0.13
Matches are distributed among these distances:
13 15 0.25
14 29 0.48
15 16 0.27
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (14 bp):
AATAAAAAAATAAA
Found at i:6995737 original size:21 final size:21
Alignment explanation
Indices: 6995695--6995738 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6995685 AAAAATTTAT
* *
6995695 AATAAATATTAACTATATTAA
1 AATAAATATTAACTAAAATAA
6995716 AATAAATAATTAA-TAAAATAA
1 AATAAAT-ATTAACTAAAATAA
6995737 AA
1 AA
6995739 CTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATAAATATTAACTAAAATAA
Found at i:7000320 original size:5 final size:5
Alignment explanation
Indices: 7000310--7000342 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7000300 TTATATATTT
*
7000310 TTTTA TTTTA TTTTG TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
7000343 ATTAAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:7003160 original size:21 final size:21
Alignment explanation
Indices: 7003134--7003173 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7003124 GATCGATACC
7003134 AGTACCAAAAGTAACAAAACT
1 AGTACCAAAAGTAACAAAACT
* *
7003155 AGTACCGAGAGTAACAAAA
1 AGTACCAAAAGTAACAAAA
7003174 ATATTAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.17, G:0.15, T:0.12
Consensus pattern (21 bp):
AGTACCAAAAGTAACAAAACT
Found at i:7004900 original size:17 final size:17
Alignment explanation
Indices: 7004878--7004910 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7004868 ATAAACACCA
7004878 TCTTTTAAAGAAATATG
1 TCTTTTAAAGAAATATG
7004895 TCTTTTAAAGAAATAT
1 TCTTTTAAAGAAATAT
7004911 AACTATTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (17 bp):
TCTTTTAAAGAAATATG
Found at i:7005084 original size:17 final size:17
Alignment explanation
Indices: 7005058--7005090 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7005048 TAAACACTAT
7005058 TCTTTCAAAGAAATATG
1 TCTTTCAAAGAAATATG
*
7005075 TCTTTTAAAGAAATAT
1 TCTTTCAAAGAAATAT
7005091 AACTATTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (17 bp):
TCTTTCAAAGAAATATG
Found at i:7005187 original size:35 final size:35
Alignment explanation
Indices: 7005141--7005210 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
7005131 ATTATGTGTC
*
7005141 ATCTCTTATAGTAAAAATCTATATAAATCAACCAA
1 ATCTCTTATAGTAAAAATCCATATAAATCAACCAA
7005176 ATCTCTTATAGTAAAAATCCATATAAATCAACCAA
1 ATCTCTTATAGTAAAAATCCATATAAATCAACCAA
7005211 TTAGGTTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (35 bp):
ATCTCTTATAGTAAAAATCCATATAAATCAACCAA
Found at i:7006981 original size:27 final size:27
Alignment explanation
Indices: 7006951--7007008 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7006941 TTTATATTTT
* *
7006951 ATACATATTTAATATAAAATAAATATG
1 ATACATATTTAATATAAAACAAATATA
* * *
7006978 ATACGTATTTGATATGAAACAAATATA
1 ATACATATTTAATATAAAACAAATATA
7007005 ATAC
1 ATAC
7007009 CCAAGTGTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (27 bp):
ATACATATTTAATATAAAACAAATATA
Found at i:7014921 original size:2 final size:2
Alignment explanation
Indices: 7014914--7014946 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7014904 GATAAATTTA
7014914 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7014947 AATTCTGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7026859 original size:18 final size:18
Alignment explanation
Indices: 7026831--7026885 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7026821 AGATTTAGTA
7026831 ATTTGTATATTTATATTAT
1 ATTT-TATATTTATATTAT
* *
7026850 ATTTTATATTAAAATTAT
1 ATTTTATATTTATATTAT
* *
7026868 GTGTTATAATTTATATTA
1 ATTTTAT-ATTTATATTA
7026886 ACATGAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 17 0.59
19 12 0.41
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
ATTTTATATTTATATTAT
Found at i:7027350 original size:23 final size:23
Alignment explanation
Indices: 7027295--7027359 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
7027285 TATTATTTCA
* ** *
7027295 TATAATTATTAAAAATTGATATT
1 TATAATTTTTAAATTTTAATATT
7027318 TAATAA-TTTTAAATTTTAATATT
1 T-ATAATTTTTAAATTTTAATATT
* *
7027341 TATAATTTTTTATTTTTAA
1 TATAATTTTTAAATTTTAA
7027360 ATTACAGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TATAATTTTTAAATTTTAATATT
Found at i:7027476 original size:2 final size:2
Alignment explanation
Indices: 7027469--7027502 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7027459 TGATTAGATA
* *
7027469 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7027503 GTGTGTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7028244 original size:29 final size:30
Alignment explanation
Indices: 7028182--7028264 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 30
7028172 AATTAATGAC
*
7028182 TTTTAATTTACATTC-AAATAAATTTGTAAA
1 TTTTAATTTATA-TCAAAATAAATTTGTAAA
* **
7028212 TTTTAATTTATCTCAAAATAAATTT-TAGT
1 TTTTAATTTATATCAAAATAAATTTGTAAA
* *
7028241 TTTTAATTTGTATCTAAATAAATT
1 TTTTAATTTATATCAAAATAAATT
7028265 CTTAATATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 25 0.56
30 20 0.44
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.51
Consensus pattern (30 bp):
TTTTAATTTATATCAAAATAAATTTGTAAA
Found at i:7034171 original size:24 final size:24
Alignment explanation
Indices: 7034131--7034220 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
7034121 ATGCATGACA
*
7034131 TTTATAAAATTATTTATTTAACATT
1 TTTATAATA-TATTTATTTAACATT
*
7034156 TTTATAATATATTTATTTAACATA
1 TTTATAATATATTTATTTAACATT
** * *
7034180 TGAATAAT-TAATT-TTTAATATT
1 TTTATAATATATTTATTTAACATT
* *
7034202 TTGATGATATATTTATTTA
1 TTTATAATATATTTATTTA
7034221 TTGAACTTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
22 12 0.23
23 8 0.15
24 24 0.46
25 8 0.15
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (24 bp):
TTTATAATATATTTATTTAACATT
Found at i:7038985 original size:3 final size:3
Alignment explanation
Indices: 7038977--7039014 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7038967 AATTAAACCA
7038977 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7039015 ATCAAATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7039706 original size:82 final size:81
Alignment explanation
Indices: 7039585--7039874 Score: 264
Period size: 82 Copynumber: 3.5 Consensus size: 81
7039575 AGAGGACTTG
* * * * *
7039585 AAGATTATGCCTAGAGGTTTTATAAATCTTAACTCTAAAACAAATTCAGCCCGAAAGACTTATGA
1 AAGATTATGCCTAGAGGTCTTACAAATCTCAACTTTAAAACAAATTCAGCCCAAAAGACTTATGA
*
7039650 ATTTTGCTTAGAAGATA
66 ATTTTGCTGA-AAGATA
* * *
7039667 AAGATTATGCTTAGAGGTCTTACAAATCTCAACTTTAAAATAAATTCAGCTCAAAAGACTTATGA
1 AAGATTATGCCTAGAGGTCTTACAAATCTCAACTTTAAAACAAATTCAGCCCAAAAGACTTATGA
*
7039732 ATCTTTTCTGAAAGACTTA
66 AT-TTTGCTGAAAGA--TA
* * * * *** * * *
7039751 GAGATTATG-CTCGGAGGTCTTACCAATCTCAACTGTAAAATGGATTTA-ACTAAGAAGACTTAT
1 AAGATTATGCCT-AGAGGTCTTACAAATCTCAACTTTAAAACAAATTCAGCCCAA-AAGACTTAT
*
7039814 GAA-TTTGCCTCGATAACATA
64 GAATTTTG-CT-GA-AAGATA
* *
7039834 AAGATTATGCCTAAAGGTCTTGC-AATCTCAACTTTAAAACA
1 AAGATTATGCCTAGAGGTCTTACAAATCTCAACTTTAAAACA
7039875 TAAGCCCGAA
Statistics
Matches: 169, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
82 81 0.48
83 29 0.17
84 56 0.33
85 3 0.02
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (81 bp):
AAGATTATGCCTAGAGGTCTTACAAATCTCAACTTTAAAACAAATTCAGCCCAAAAGACTTATGA
ATTTTGCTGAAAGATA
Found at i:7045066 original size:23 final size:23
Alignment explanation
Indices: 7045029--7045089 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7045019 TATGCAATGA
*
7045029 CATGATAAATTAATGA-TGATGATG
1 CATGAT-AATGAATGAGTGA-GATG
7045053 -ATGATCAATGAATGAGTGAGATG
1 CATGAT-AATGAATGAGTGAGATG
7045076 CATGA-AATGAATGA
1 CATGATAATGAATGA
7045090 AAATAGACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 9 0.27
23 17 0.52
24 7 0.21
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.28
Consensus pattern (23 bp):
CATGATAATGAATGAGTGAGATG
Found at i:7046641 original size:19 final size:18
Alignment explanation
Indices: 7046583--7046642 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
7046573 ATATATAATG
*
7046583 AAATCAAAATAAAATAGGA
1 AAAT-AAAATAAAAAAGGA
* *
7046602 GAAATTAAATCAAAACA-GA
1 -AAATAAAAT-AAAAAAGGA
7046621 AAATAAAATGAAAAAAGGA
1 AAATAAAAT-AAAAAAGGA
7046640 AAA
1 AAA
7046643 GAATTACTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
18 13 0.39
19 11 0.33
20 9 0.27
ACGTcount: A:0.70, C:0.05, G:0.12, T:0.13
Consensus pattern (18 bp):
AAATAAAATAAAAAAGGA
Found at i:7047302 original size:25 final size:23
Alignment explanation
Indices: 7047269--7047338 Score: 59
Period size: 25 Copynumber: 2.9 Consensus size: 23
7047259 GCACTAAAAT
*
7047269 TTTCATTTGTTTTTTTTTTTTAAA
1 TTTCCTTTGTTTTTTTTTTTT-AA
** *
7047293 CTTTCCTTTGTTATTGATTTTTTGA
1 -TTTCCTTTGTT-TTTTTTTTTTAA
*
7047318 TTTCTCTTTCTTTTTTTTTTT
1 TTTC-CTTTGTTTTTTTTTTT
7047339 ATTTTTTAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 11 0.31
25 17 0.47
26 8 0.22
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.74
Consensus pattern (23 bp):
TTTCCTTTGTTTTTTTTTTTTAA
Found at i:7047705 original size:2 final size:2
Alignment explanation
Indices: 7047698--7047730 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7047688 ATTAGTGTCA
7047698 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7047731 AGCATGTGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7052915 original size:18 final size:17
Alignment explanation
Indices: 7052881--7052939 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
7052871 ATAATACTTG
7052881 TTATTATAAT-TTA-TT
1 TTATTATAATATTATTT
7052896 TTATTATCAATATTATTT
1 TTATTAT-AATATTATTT
*
7052914 TTA-TATTAAAATATATTT
1 TTATTA-TAATAT-TATTT
7052932 TTCATTAT
1 TT-ATTAT
7052940 TTTAATTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
15 7 0.19
16 3 0.08
17 9 0.25
18 13 0.36
19 2 0.06
20 2 0.06
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTATAATATTATTT
Found at i:7053353 original size:2 final size:2
Alignment explanation
Indices: 7053346--7053377 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7053336 TGATAATGGC
*
7053346 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7053378 GAAATGTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7062582 original size:29 final size:29
Alignment explanation
Indices: 7062545--7062604 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
7062535 ATTATTTTAG
* * *
7062545 TCATGTTAGTCGTGTCTATTTATGTATAT
1 TCATGTTAGTCGTGTCAATTCATATATAT
* *
7062574 TCATTTTAGTTGTGTCAATTCATATATAT
1 TCATGTTAGTCGTGTCAATTCATATATAT
7062603 TC
1 TC
7062605 GTAATATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (29 bp):
TCATGTTAGTCGTGTCAATTCATATATAT
Found at i:7068054 original size:25 final size:24
Alignment explanation
Indices: 7068001--7068048 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
7067991 ATATAATAAA
* *
7068001 AATTTTAAGTTTGAATTTGATTCAT
1 AATTTGAAGTTTGAATTCGATT-AT
7068026 AATTTGAAGTTTGATATTCGATT
1 AATTTGAAGTTTGA-ATTCGATT
7068049 TGAATTCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (24 bp):
AATTTGAAGTTTGAATTCGATTAT
Found at i:7070086 original size:27 final size:28
Alignment explanation
Indices: 7070052--7070110 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
7070042 AAAATAATAC
* *
7070052 ATTAATTAATATATTTAT-AATTCAAAT
1 ATTAATTAAAAAATTTATAAATTCAAAT
* *
7070079 ATTAATTAAAAAATTTTTAAATTTAAAT
1 ATTAATTAAAAAATTTATAAATTCAAAT
7070107 ATTA
1 ATTA
7070111 CAAACATTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (28 bp):
ATTAATTAAAAAATTTATAAATTCAAAT
Found at i:7071007 original size:2 final size:2
Alignment explanation
Indices: 7071000--7071026 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7070990 GATTTCTTTC
7071000 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7071027 AAAGAGGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7071110 original size:20 final size:20
Alignment explanation
Indices: 7071085--7071124 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7071075 ATGAGATCAA
7071085 AATTA-TTAAATTTAAAAAAT
1 AATTATTTAAA-TTAAAAAAT
*
7071105 AATTATTTTAATTAAAAAAT
1 AATTATTTAAATTAAAAAAT
7071125 TCAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTATTTAAATTAAAAAAT
Found at i:7071122 original size:21 final size:20
Alignment explanation
Indices: 7071085--7071123 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7071075 ATGAGATCAA
*
7071085 AATTATTAAATTTAAAAAAT
1 AATTATTAAATTAAAAAAAT
*
7071105 AATTATTTTAATTAAAAAA
1 AATTA-TTAAATTAAAAAA
7071124 TTCAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTATTAAATTAAAAAAAT
Found at i:7082755 original size:2 final size:2
Alignment explanation
Indices: 7082748--7082774 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7082738 AGATATGAAA
7082748 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
7082775 ATACACCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7089497 original size:30 final size:31
Alignment explanation
Indices: 7089458--7089517 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
7089448 TATTTCAAAC
* * *
7089458 AAAATATTAATTTATGTTAAGAGTTTATTTT
1 AAAATATTAATTTATATTAAAAATTTATTTT
7089489 AAAA-ATTAATTTATATTAAAAATTTATTT
1 AAAATATTAATTTATATTAAAAATTTATTT
7089518 AATATAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (31 bp):
AAAATATTAATTTATATTAAAAATTTATTTT
Found at i:7089525 original size:17 final size:17
Alignment explanation
Indices: 7089481--7089518 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7089471 ATGTTAAGAG
*
7089481 TTTATTTTAAAAATTAA
1 TTTATATTAAAAATTAA
*
7089498 TTTATATTAAAAATTTA
1 TTTATATTAAAAATTAA
7089515 TTTA
1 TTTA
7089519 ATATAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATATTAAAAATTAA
Found at i:7089538 original size:29 final size:29
Alignment explanation
Indices: 7089506--7089584 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 29
7089496 AATTTATATT
7089506 AAAAATTTATTTAATATAAATTAAAGA-TA
1 AAAAATTTATTTAATATAAATTAAA-ATTA
*
7089535 AAAATTTTATTTAAATATAAATTAAAATTTA
1 AAAAATTTATTT-AATATAAATTAAAA-TTA
7089566 AAAAA-TTATTTAGATATAA
1 AAAAATTTATTTA-ATATAA
7089585 CAAAAATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
29 13 0.30
30 25 0.57
31 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (29 bp):
AAAAATTTATTTAATATAAATTAAAATTA
Found at i:7090988 original size:21 final size:23
Alignment explanation
Indices: 7090948--7090995 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
7090938 TTAGAAAAGC
7090948 TTTTGGCAAAAGGTTTTGATTTAG
1 TTTTGGCAAAAGGTTTTGATTT-G
7090972 TTTTGG-AAAA-G-TTTGATTTG
1 TTTTGGCAAAAGGTTTTGATTTG
7090992 TTTT
1 TTTT
7090996 CTGAGGCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.21
21 8 0.33
22 1 0.04
23 4 0.17
24 6 0.25
ACGTcount: A:0.23, C:0.02, G:0.23, T:0.52
Consensus pattern (23 bp):
TTTTGGCAAAAGGTTTTGATTTG
Found at i:7091047 original size:20 final size:20
Alignment explanation
Indices: 7091024--7091063 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7091014 TTTTTTGAGG
* *
7091024 AATTTTCATAAATTTTAGAA
1 AATTTTCAAAAATTTCAGAA
*
7091044 AATTTTGAAAAATTTCAGAA
1 AATTTTCAAAAATTTCAGAA
7091064 TTTGTTGAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (20 bp):
AATTTTCAAAAATTTCAGAA
Found at i:7094020 original size:34 final size:34
Alignment explanation
Indices: 7093982--7094050 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7093972 AAAAGTACAT
7093982 AGTTTTACTTCACTTTGATTTGCCAAACCCAGAC
1 AGTTTTACTTCACTTTGATTTGCCAAACCCAGAC
7094016 AGTTTTACTTCACTTTGATTTGCCAAACCCAGAC
1 AGTTTTACTTCACTTTGATTTGCCAAACCCAGAC
7094050 A
1 A
7094051 AGATTTATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (34 bp):
AGTTTTACTTCACTTTGATTTGCCAAACCCAGAC
Found at i:7099257 original size:21 final size:21
Alignment explanation
Indices: 7099232--7099273 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7099222 CAGTTTGCTT
*
7099232 TTTATTTTATTT-TTAATTTAA
1 TTTATTTT-TTTGTTAAATTAA
7099253 TTTATTTTTTTGTTAAATTAA
1 TTTATTTTTTTGTTAAATTAA
7099274 ACAAAGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTATTTTTTTGTTAAATTAA
Found at i:7112888 original size:50 final size:50
Alignment explanation
Indices: 7112729--7112996 Score: 231
Period size: 49 Copynumber: 5.4 Consensus size: 50
7112719 TTCCAATATG
* ** * * *
7112729 AGATTTTTAAAATTGTTGATTCTCTACTTAGAGGA-ATTTTTTCAAGATA
1 AGATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTTCAAGATA
* * * * * * *
7112778 AAATTTCTAAAGTTGTTAAGCCTCTACTTAGATGAGC-ATTTTCAAGATG
1 AGATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTTCAAGATA
* * *
7112827 AGATTCTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACTTTTTTCAAGATA
1 AGATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTTCAAGATA
** * **
7112877 AGATTTTTAAAGTCATTGAGCCTTTGGT-AGGAAGAGC-TTTTTCAAGATAA
1 AGATTTTTAAAGTTGTTGAGCCTCTACTGA-GAAGAGCTTTTTTCAAGAT-A
* * * * * * *
7112927 AAATTTTTAAAATTATTAAGCCTCTATTGAGATGAGCTTTTTT-AAGATG
1 AGATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTTCAAGATA
7112976 AGATTTTTAAAGTTGTTGAGC
1 AGATTTTTAAAGTTGTTGAGC
7112997 TATTGTCAAG
Statistics
Matches: 174, Mismatches: 39, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
49 96 0.55
50 72 0.41
51 6 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (50 bp):
AGATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTTCAAGATA
Found at i:7112899 original size:99 final size:99
Alignment explanation
Indices: 7112715--7112988 Score: 266
Period size: 99 Copynumber: 2.8 Consensus size: 99
7112705 AATGATATCT
* ** * *
7112715 CATTTTCCAATATGAGATTTTTAAAATTGTTGATTCTCTACTTAGAGGAA-TTTTTTCAAGATAA
1 CATTTT-CAAGATGAGATTTTTAAAATTGTTGAGCCTCTACTGAGAAGAACTTTTTTCAAGATAA
* * ** * *
7112779 AATTTCTAAAGTTGTTAAGCCTCTACTTA-GATGAG
65 GATTTTTAAAGTCATTAAGCCT-TACGTAGGAAGAG
* * *
7112814 CATTTTCAAGATGAGATTCTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACTTTTTTCAAGATAAG
1 CATTTTCAAGATGAGATTTTTAAAATTGTTGAGCCTCTACTGAGAAGAACTTTTTTCAAGATAAG
* **
7112879 ATTTTTAAAGTCATTGAGCCTTTGGTAGGAAGAG
66 ATTTTTAAAGTCATTAAGCCTTACGTAGGAAGAG
* * * * * * * * *
7112913 CTTTTTCAAGATAAAAATTTTTAAAATTATTAAGCCTCTATTGAGATGAGCTTTTTT-AAGATGA
1 CATTTTCAAGAT-GAGATTTTTAAAATTGTTGAGCCTCTACTGAGAAGAACTTTTTTCAAGATAA
7112977 GATTTTTAAAGT
65 GATTTTTAAAGT
7112989 TGTTGAGCTA
Statistics
Matches: 143, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
98 38 0.27
99 71 0.50
100 34 0.24
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (99 bp):
CATTTTCAAGATGAGATTTTTAAAATTGTTGAGCCTCTACTGAGAAGAACTTTTTTCAAGATAAG
ATTTTTAAAGTCATTAAGCCTTACGTAGGAAGAG
Found at i:7119175 original size:7 final size:8
Alignment explanation
Indices: 7119163--7119200 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
7119153 CTACGCTTCA
*
7119163 AAAAAATA
1 AAAAAATG
7119171 AAAAAATG
1 AAAAAATG
7119179 AGAAAAATG
1 A-AAAAATG
7119188 -AAAAATG
1 AAAAAATG
7119195 AAAAAA
1 AAAAAA
7119201 AAAAAGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
7 7 0.26
8 13 0.48
9 7 0.26
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:7119201 original size:9 final size:9
Alignment explanation
Indices: 7119162--7119201 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
7119152 ACTACGCTTC
7119162 AAAAAAAT-
1 AAAAAAATG
7119170 AAAAAAATG
1 AAAAAAATG
*
7119179 AGAAAAATG
1 AAAAAAATG
7119188 --AAAAATG
1 AAAAAAATG
7119195 AAAAAAA
1 AAAAAAA
7119202 AAAAGAACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.25
8 8 0.29
9 13 0.46
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:7120368 original size:43 final size:43
Alignment explanation
Indices: 7120273--7120664 Score: 378
Period size: 43 Copynumber: 9.0 Consensus size: 43
7120263 GTTAAAAAAA
* * **
7120273 AGCCTTATTTATTTTTCAAAAGTGATTGAGCCTCT-GTTAGAAAA
1 AGCCTTATTTATTTTTCAAAAGTTA-TGAGCCTCTATTTAG-AGG
* * * *
7120317 AGCCTTATTTATTTTTCAAAAATTAAGAGCCTTTGTTTAGAGG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
* * * * *
7120360 AACTTTA-TTATTTTTTAAAAGTCATTGAAG-CTCTATTTAGAAG
1 AGCCTTATTTATTTTTCAAAAGTTA-TG-AGCCTCTATTTAGAGG
* * * **
7120403 AGCCTCATTTATTTTTCAAAAGTTATGAGTCTCTGTTTAGAAT
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
*
7120446 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
** * * *
7120489 AGTTTTATTTATTTTTAAAAAGTCGT-TGAGCTTGTATTTAGAGG
1 AGCCTTATTTATTTTTCAAAAGT--TATGAGCCTCTATTTAGAGG
* *
7120533 AGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAAAGG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
** * * *
7120576 AGTTTTATTTATTTTTTAAAAGTTGTAGAGCCTCTATTTATAGG
1 AGCCTTATTTATTTTTCAAAAGTTAT-GAGCCTCTATTTAGAGG
* * **
7120620 AGCCTTATATATTTTTCAAAAGTTGTGAGCCTCTGCTTAGAGG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
7120663 AG
1 AG
7120665 TTTTTATGTT
Statistics
Matches: 287, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
42 17 0.06
43 152 0.53
44 117 0.41
45 1 0.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.43
Consensus pattern (43 bp):
AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAGAGG
Found at i:7120542 original size:87 final size:87
Alignment explanation
Indices: 7120273--7120677 Score: 355
Period size: 87 Copynumber: 4.6 Consensus size: 87
7120263 GTTAAAAAAA
* * ** **
7120273 AGCCTTATTTATTTTTCAAAAGTGATTGAGCCTCT-GTTAGAAAAAGCCTTATTTATTTTTCAAA
1 AGCCTTATTTATTTTTCAAAAGTTA-TGAGCCTCTATTTA-AAGGAGTTTTATTTATTTTT-AAA
*
7120337 AA-TTAAGAGCCTT-TGTTTAGAGG
63 AAGTTAAGAGCCTTGTATTTAGAGG
* * * * ** * *
7120360 AACTTTA-TTATTTTTTAAAAGTCATTGAAG-CTCTATTTAGAA-GAGCCTCATTTATTTTTCAA
1 AGCCTTATTTATTTTTCAAAAGTTA-TG-AGCCTCTATTTA-AAGGAGTTTTATTTATTTTTAAA
* * **
7120422 AAGTTATGAGTCTCTG--TTTAGAAT
63 AAGTTAAGAGCCT-TGTATTTAGAGG
7120446 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGGAGTTTTATTTATTTTTAAAAAG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGGAGTTTTATTTATTTTTAAAAAG
*
7120511 TCGT-TGAG-CTTGTATTTAGAGG
66 T--TAAGAGCCTTGTATTTAGAGG
* *
7120533 AGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAAAGGAGTTTTATTTATTTTTTAAAAG
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGGAGTTTTATTTATTTTTAAAAAG
* * *
7120598 TTGTAGAGCC-TCTATTTATAGG
66 TT-AAGAGCCTTGTATTTAGAGG
* * ** *
7120620 AGCCTTATATATTTTTCAAAAGTTGTGAGCCTCTGCTTAGAGGAGTTTTTATGTTATT
1 AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGGAG-TTTTAT-TTATT
7120678 CAAATAGTTT
Statistics
Matches: 270, Mismatches: 31, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
85 11 0.04
86 89 0.33
87 157 0.58
88 8 0.03
89 5 0.02
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (87 bp):
AGCCTTATTTATTTTTCAAAAGTTATGAGCCTCTATTTAAAGGAGTTTTATTTATTTTTAAAAAG
TTAAGAGCCTTGTATTTAGAGG
Found at i:7124250 original size:29 final size:30
Alignment explanation
Indices: 7124196--7124277 Score: 100
Period size: 29 Copynumber: 2.8 Consensus size: 30
7124186 AAAGTTAATC
7124196 ATTT-TATTTAAATAAATTTTTA-TATTT-
1 ATTTATATTTAAATAAATTTTTATTATTTG
* *
7124223 TTATTATATTT-AAGAAATTTTTATTATTTG
1 AT-TTATATTTAAATAAATTTTTATTATTTG
*
7124253 ATTTCTATTTAAATAAATTTTTATT
1 ATTTATATTTAAATAAATTTTTATT
7124278 TAAAAAATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.02
28 13 0.29
29 17 0.38
30 14 0.31
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (30 bp):
ATTTATATTTAAATAAATTTTTATTATTTG
Found at i:7124277 original size:16 final size:15
Alignment explanation
Indices: 7124253--7124286 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7124243 TTATTATTTG
7124253 ATTTCTATTTAAATAA
1 ATTTCTATTTAAA-AA
*
7124269 ATTTTTATTTAAAAA
1 ATTTCTATTTAAAAA
7124284 ATT
1 ATT
7124287 AATTTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTCTATTTAAAAA
Found at i:7124326 original size:30 final size:30
Alignment explanation
Indices: 7124292--7124428 Score: 97
Period size: 30 Copynumber: 4.7 Consensus size: 30
7124282 AAATTAATTT
*
7124292 ATATTAAAGACTTTTTTAAATGTAAAATAA
1 ATATTAAAGACTTATTTAAATGTAAAATAA
* * *
7124322 ATATTAATAGA-TTATTTGAATATAAATTAA
1 ATATTAA-AGACTTATTTAAATGTAAAATAA
* * * * *
7124352 ATGTT-AAGAATTTATTTAGATTTAAATTAA
1 ATATTAAAG-ACTTATTTAAATGTAAAATAA
** *
7124382 A-ATTAAATTCTTATTTAAATGTAATA-AA
1 ATATTAAAGACTTATTTAAATGTAAAATAA
*
7124410 ATA-TAAA-AATTATTTAAAT
1 ATATTAAAGACTTATTTAAAT
7124429 AAAATGATAA
Statistics
Matches: 84, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
27 10 0.12
28 9 0.11
29 17 0.20
30 45 0.54
31 3 0.04
ACGTcount: A:0.50, C:0.01, G:0.06, T:0.43
Consensus pattern (30 bp):
ATATTAAAGACTTATTTAAATGTAAAATAA
Found at i:7136399 original size:2 final size:2
Alignment explanation
Indices: 7136386--7136419 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
7136376 CTCTTTGCCT
7136386 TA TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T
7136420 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7136424 original size:2 final size:2
Alignment explanation
Indices: 7136419--7136451 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7136409 TATATATATA
7136419 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7136452 ATAATGATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7140560 original size:7 final size:6
Alignment explanation
Indices: 7140525--7140576 Score: 70
Period size: 6 Copynumber: 8.7 Consensus size: 6
7140515 TCGATTAATA
* *
7140525 TTAAAT TTAAAT TTAAAT TTGAGT TTAAATT TTAAAT TT-AAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T TTAAAT TTAAAT TTAAAT
7140573 TTAA
1 TTAA
7140577 TCAAATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 5 0.12
6 29 0.73
7 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:7140669 original size:23 final size:23
Alignment explanation
Indices: 7140643--7140687 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7140633 TTCACTTGAT
* *
7140643 TAAATTTAATTAATATAAAAAAA
1 TAAACTTAATTAACATAAAAAAA
*
7140666 TAAACTTAATTAACATATAAAA
1 TAAACTTAATTAACATAAAAAA
7140688 TTTTTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
TAAACTTAATTAACATAAAAAAA
Found at i:7144408 original size:19 final size:18
Alignment explanation
Indices: 7144386--7144433 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
7144376 GTATTCTATG
*
7144386 ATTTAAAATTAATTTAAT
1 ATTTAAAATTAATATAAT
* *
7144404 AATTTTAAGTTAATATAAT
1 -ATTTAAAATTAATATAAT
7144423 ATTTATAAATT
1 ATTTA-AAATT
7144434 TTATTTTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTTAAAATTAATATAAT
Found at i:7144505 original size:13 final size:13
Alignment explanation
Indices: 7144485--7144518 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7144475 ATAACATTTT
*
7144485 TATTAAATTAATA
1 TATTAAATTAAAA
*
7144498 TTTTAAATTAAAA
1 TATTAAATTAAAA
7144511 TATTAAAT
1 TATTAAAT
7144519 ATTAATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTAAATTAAAA
Found at i:7146538 original size:127 final size:130
Alignment explanation
Indices: 7146309--7146561 Score: 395
Period size: 127 Copynumber: 2.0 Consensus size: 130
7146299 AGATGGATTA
* ** *
7146309 AATTGTTCCCTTTGCCCTAACAATTTGAATGTAAATACTAGTTTTATTGTTCTTTTAGTTGTTTG
1 AATTGTTCCCTTTGCCCTAACAAGTTGAACATAAATACTAGTTTTATTGTTCTTTTAGTTATTTG
*
7146374 ATGATAAAAAATATTATTTGTATCACAAATCTATTCTATTTAAATTTTATTTTTCAATAAACGAT
66 ATGATAAAAAATATTATTTGTATCACAAATCTATTCTATATAAATTTTATTTTTCAATAAACGAT
**
7146439 AATTGTTCCCTTTGCCCTAACAAGTTGAACATAAATGTTAGTTTTA-T-TT-TTTTAGTTATTTG
1 AATTGTTCCCTTTGCCCTAACAAGTTGAACATAAATACTAGTTTTATTGTTCTTTTAGTTATTTG
** *
7146501 ATGATAAAAAATATTATTTGTATCATGAATTTATTCTATATAAATTTTATTTTTCAATAAA
66 ATGATAAAAAATATTATTTGTATCACAAATCTATTCTATATAAATTTTATTTTTCAATAAA
7146562 TGGTGTGTTT
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
127 69 0.61
128 2 0.02
129 1 0.01
130 41 0.36
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.47
Consensus pattern (130 bp):
AATTGTTCCCTTTGCCCTAACAAGTTGAACATAAATACTAGTTTTATTGTTCTTTTAGTTATTTG
ATGATAAAAAATATTATTTGTATCACAAATCTATTCTATATAAATTTTATTTTTCAATAAACGAT
Found at i:7147753 original size:67 final size:65
Alignment explanation
Indices: 7147626--7147838 Score: 213
Period size: 67 Copynumber: 3.2 Consensus size: 65
7147616 TTTTAATAAT
*
7147626 TAATTATTA-TAATTG-GTTTT-TTGAGCTTTCTTTACCTTTTTGTTTTCTTCGA-TTTAAAAGT
1 TAATTATTATTAATTGTGTTTTCTTG-GCTTTCTTTACCTTTTT-TTTTCTTCAATTTTAAAAGT
7147687 AA
64 AA
*
7147689 TAATTATATATTAATTGTGTTTTCTTGGCTTTTTTTACCTTTTCTTTTTCTTCAATTTTAAAAGT
1 TAATTAT-TATTAATTGTGTTTTCTTGGCTTTCTTTACCTTTT-TTTTTCTTCAATTTTAAAAGT
*
7147754 CA
64 AA
* * * * *
7147756 TATTTATTAATTAATTGTG-TATCTTTGGCTTTCTTTA-TTTTTTTGATTTCTTTAGTTTTAAAA
1 TAATTATT-ATTAATTGTGTTTTC-TTGGCTTTCTTTACCTTTTTT--TTTCTTCAATTTTAAAA
*
7147819 ATAA
62 GTAA
*
7147823 TATTTATCTATTAATT
1 TAATTAT-TATTAATT
7147839 ATGATAATTG
Statistics
Matches: 128, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
63 7 0.05
64 2 0.02
65 8 0.06
66 37 0.29
67 73 0.57
68 1 0.01
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.58
Consensus pattern (65 bp):
TAATTATTATTAATTGTGTTTTCTTGGCTTTCTTTACCTTTTTTTTTCTTCAATTTTAAAAGTAA
Found at i:7149627 original size:3 final size:3
Alignment explanation
Indices: 7149619--7149660 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7149609 ACTTGAAAAT
7149619 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7149661 AATCTAATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7152195 original size:219 final size:217
Alignment explanation
Indices: 7151724--7152378 Score: 683
Period size: 219 Copynumber: 3.0 Consensus size: 217
7151714 CTCCATAATT
* * * * * * * *
7151724 AGTAACATAACAAACAAAAATTAAAAGGAGAAAGTGTAATAGAGGCATAAAA-AATACTCATATA
1 AGTAATATGACAAACAAAAATTGAAAGAAAAAAGTGAAAAAGAGACATAAAAGAA-ACTCATATA
* *
7151788 ACTTTTCATCCTTAAAAGAGATGGAAAACCATAAGTTACAAAAAAAATCAAAAGTAAAAAATATA
65 AC-TTTCATCCTTAAAAGAGATAGAAAACCATAAGTTAC-AAGAAAATCAAAAGTAAAAAATATA
* * * *
7151853 ACTGTTACAAAACTAAAAATTTGAAT-GATAAATTTTAACAGATAATGGTTTTAAAGAAAATGAA
128 AATGTTACAAAATTAAAAGTTTG-ATCAATAAATTTTAACA-ATAATGGTTTTAAA-AAAATGAA
* * * *
7151917 TATAAGAAAATAAAAAATCAATAATCCA
190 TACAAGAAAATCAAAAGTCAATAATCAA
* * * * * ** *
7151945 AGTAATATGAGACATAAGAATAGGGAGAAAAAAGTGAAAAAGAGATATAAAAGAAACTCATATAA
1 AGTAATATGACAAACAAAAATTGAAAGAAAAAAGTGAAAAAGAGACATAAAAGAAACTCATATAA
* * **
7152010 CTTTAATCCTTAAAAGAGATAGAAAACCATAAATCGCAAGAAAATCAAAAGTAAAAAATATAAAT
66 CTTTCATCCTTAAAAGAGATAGAAAACCATAAGTTACAAGAAAATCAAAAGTAAAAAATATAAAT
* * * * * * *
7152075 ATTATAAAATTAAAGGTTTGATCAATAAATTTTGACCAATACTAGTTTTAAATAAAATGAATGCA
131 GTTACAAAATTAAAAGTTTGATCAATAAATTTT-AACAATAATGGTTTTAAA-AAAATGAATACA
7152140 AGAAAATCAAAAGTCAATAATCAA
194 AGAAAATCAAAAGTCAATAATCAA
* * * *
7152164 AGTAATATGACAAACAATAATTGAAAGAAAAAAGTGAAATAA-AAACATGAAAGATACTCATATA
1 AGTAATATGACAAACAAAAATTGAAAGAAAAAAGTGAAA-AAGAGACATAAAAGAAACTCATATA
* * * ** * ***
7152228 AC-TCCACCCTTAAAAGAGATAGAAGATTATAAGTTATAAGAAAAAT-AAAAACCAAAAATATAA
65 ACTTTCATCCTTAAAAGAGATAGAAAACCATAAGTTACAAG-AAAATCAAAAGTAAAAAATATAA
* * *
7152291 ATGTTACAAAATTAAATAG-TTGATCAATACATTTTAAAAATAATGGATTTAAAAAGAATGAATA
129 ATGTTACAAAATTAAA-AGTTTGATCAATAAATTTTAACAATAATGGTTTTAAAAA-AATGAATA
7152355 CAAGAAAATCAAAAGTCAATAATC
192 CAAGAAAATCAAAAGTCAATAATC
7152379 CAAATAAATA
Statistics
Matches: 355, Mismatches: 72, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
216 2 0.01
217 44 0.12
218 73 0.21
219 151 0.43
220 36 0.10
221 47 0.13
222 2 0.01
ACGTcount: A:0.56, C:0.09, G:0.11, T:0.24
Consensus pattern (217 bp):
AGTAATATGACAAACAAAAATTGAAAGAAAAAAGTGAAAAAGAGACATAAAAGAAACTCATATAA
CTTTCATCCTTAAAAGAGATAGAAAACCATAAGTTACAAGAAAATCAAAAGTAAAAAATATAAAT
GTTACAAAATTAAAAGTTTGATCAATAAATTTTAACAATAATGGTTTTAAAAAAATGAATACAAG
AAAATCAAAAGTCAATAATCAA
Found at i:7153342 original size:220 final size:213
Alignment explanation
Indices: 7152747--7153391 Score: 692
Period size: 216 Copynumber: 3.0 Consensus size: 213
7152737 TCATAATTAA
* * * * * *
7152747 TAATAAGACAAACAAGAATT--AAGAGAAAGTGTAATAGAGGCATAAAAGATATTCATATAACTT
1 TAATATGACAAACAAGAATTGGAA-AAAAAGTGTAATAGAGACATAAATGATACTCATATAACTC
**
7152810 TTACCCTTAAAAGAGAT-GGAAAATCATAAATCACAAAAAAATCAAAAGTAAAAAATATAAATGT
65 TTA-CCTTAAAAGAGATAAAAAAAT-ATAAATCACAAAAAAATCAAAAGTAAAAAATATAAATGT
* *
7152874 TACAAAACCAAAGATTTGAACAATAAATTTTAATAAATAATGGTTTTAAAAAAAATGAATACAAG
128 TAC-AAACTAAAGATTTGATCAATAAATTTTAA-AAATAATGGTTTT-AAAAAAATGAATACAAG
* *
7152939 AAAATCAAAAGTTAA-AATCCAAG
190 AAAATCAAAAGTCAATAATCAAAG
* * * * * *
7152962 TAATATGACAAATAAGAATTGGAAAAAAAGTGTAAAAAATACATGAAAT-AAACTTATATAACTC
1 TAATATGACAAACAAGAATTGGAAAAAAAGTGTAATAGAGACAT-AAATGATACTCATATAACTC
* * * * * *
7153026 TCACATTTAAAAGAGATAAAATACTATAAATCACAATAAAATCAAAAGTAAAAAATATAAATATT
65 TTAC-CTTAAAAGAGATAAAAAAATATAAATCACAAAAAAATCAAAAGTAAAAAATATAAATGTT
*
7153091 ACAAAATCAAAGATTTGATCAATAAATTTTAACAAATAATGGTTTTAAATAAAATGAATACAAGA
129 ACAAACT-AAAGATTTGATCAATAAATTTTAA-AAATAATGGTTTTAAA-AAAATGAATACAAGA
*
7153156 AAATCAAAAGCCAATAATCAAAG
191 AAATCAAAAGTCAATAATCAAAG
* * * **
7153179 TAATATGACAAACAATAATTAGAAGAAAAAAAGTGTAATAGAGATATAAATGATGCTCATATTCC
1 TAATATGACAAACAAGAATT-G--GAAAAAAAGTGTAATAGAGACATAAATGATACTCATATAAC
* * * * *
7153244 TCTTATCCTTAAAAGAGATAAAAAAATATAAGTCACAAGAAAATAAAAAATAAAAAATAAAAATG
63 TCTTA-CCTTAAAAGAGATAAAAAAATATAAATCACAAAAAAATCAAAAGTAAAAAATATAAATG
* ** * ** *
7153309 TTATATAACTAAAGGGTTGATCAA-AGTATTTTAAAGCTAATGGTTTT-AAAAAATGAATATAAG
127 TTACA-AACTAAAGATTTGATCAATA-AATTTTAAAAATAATGGTTTTAAAAAAATGAATACAAG
*
7153372 AAAATTAAAAGTCAATAATC
190 AAAATCAAAAGTCAATAATC
7153392 CAAATAAATA
Statistics
Matches: 357, Mismatches: 58, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
215 25 0.07
216 142 0.40
217 64 0.18
218 3 0.01
219 16 0.04
220 103 0.29
221 4 0.01
ACGTcount: A:0.56, C:0.09, G:0.10, T:0.25
Consensus pattern (213 bp):
TAATATGACAAACAAGAATTGGAAAAAAAGTGTAATAGAGACATAAATGATACTCATATAACTCT
TACCTTAAAAGAGATAAAAAAATATAAATCACAAAAAAATCAAAAGTAAAAAATATAAATGTTAC
AAACTAAAGATTTGATCAATAAATTTTAAAAATAATGGTTTTAAAAAAATGAATACAAGAAAATC
AAAAGTCAATAATCAAAG
Found at i:7160486 original size:6 final size:7
Alignment explanation
Indices: 7160472--7160496 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7160462 TTCTTTAAAA
7160472 TTAATTT
1 TTAATTT
7160479 TTAATTT
1 TTAATTT
7160486 TTAATTT
1 TTAATTT
7160493 TTAA
1 TTAA
7160497 ATATAGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTAATTT
Found at i:7161593 original size:155 final size:150
Alignment explanation
Indices: 7161413--7161719 Score: 533
Period size: 151 Copynumber: 2.0 Consensus size: 150
7161403 GATAAACTCA
* *
7161413 AAAAAGTAATATATAGGATCAAAAAATTTAAAAAAAAAAATCAGATTTTGATATCATGTTAAATA
1 AAAAAGTAATATATAGGATCAAAAAA-TT---AAAAAAAATCAGATTTTAATACCATGTTAAATA
7161478 TTCAAAACCAATTGATCATAAATGGATTTAAATTGAATATAATACTATAAAAAAAATTAAAGATT
62 TTCAAAACCAATTGATCATAAATGGATTTAAATTGAATATAATACTAT-AAAAAAATTAAAGATT
7161543 TAAGAGACGCGAGATAACATCACTT
126 TAAGAGACGCGAGATAACATCACTT
*
7161568 AAAATGTAATATATAGGATCAAAAAATTAAAAAAAATCAGATTTTAATACCATGTTAAATATTCA
1 AAAAAGTAATATATAGGATCAAAAAATTAAAAAAAATCAGATTTTAATACCATGTTAAATATTCA
*
7161633 AAACTAATTGATCATAAATGGATTTAAATTGAATATAATACTATAAAAAAATTAAAGATTTAAGA
66 AAACCAATTGATCATAAATGGATTTAAATTGAATATAATACTATAAAAAAATTAAAGATTTAAGA
7161698 GACGCGAGATAACATCACTT
131 GACGCGAGATAACATCACTT
7161718 AA
1 AA
7161720 TAGTTAACTC
Statistics
Matches: 148, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
150 43 0.29
151 78 0.53
154 2 0.01
155 25 0.17
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.29
Consensus pattern (150 bp):
AAAAAGTAATATATAGGATCAAAAAATTAAAAAAAATCAGATTTTAATACCATGTTAAATATTCA
AAACCAATTGATCATAAATGGATTTAAATTGAATATAATACTATAAAAAAATTAAAGATTTAAGA
GACGCGAGATAACATCACTT
Found at i:7162183 original size:2 final size:2
Alignment explanation
Indices: 7162176--7162209 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7162166 CAGCACATTA
7162176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7162210 GAAAATGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7163855 original size:31 final size:29
Alignment explanation
Indices: 7163802--7163861 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
7163792 ATTATGATAC
* *
7163802 ATAATTTTTATATAAAATATGATATAAAT
1 ATAATTTTTACATAAAATATGATACAAAT
*
7163831 ATAATATTTTACATAACATAATGATACAAAT
1 ATAAT-TTTTACATAAAAT-ATGATACAAAT
7163862 TATCAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 11 0.42
31 10 0.38
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (29 bp):
ATAATTTTTACATAAAATATGATACAAAT
Found at i:7164233 original size:21 final size:22
Alignment explanation
Indices: 7164196--7164248 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
7164186 TATTTATATA
*
7164196 TATTTAA-TAAATAAAATTTTT
1 TATTTAATTAAATAAAATTGTT
*
7164217 TATTTAATTATAT-AAATTGTT
1 TATTTAATTAAATAAAATTGTT
7164238 T-TTTAGATTAA
1 TATTTA-ATTAA
7164249 TTAGAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 19 0.70
22 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
TATTTAATTAAATAAAATTGTT
Found at i:7164644 original size:2 final size:2
Alignment explanation
Indices: 7164637--7164662 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7164627 TTCCAACAAC
7164637 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7164663 GTCAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7168468 original size:20 final size:20
Alignment explanation
Indices: 7168428--7168468 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7168418 TCATTTGGGT
**
7168428 TTGAATCTAATTTAATTTTA
1 TTGAATCTAATTTAAAATTA
*
7168448 TTGAATGTAATTTAAAATTA
1 TTGAATCTAATTTAAAATTA
7168468 T
1 T
7168469 ATTATTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
TTGAATCTAATTTAAAATTA
Found at i:7174696 original size:49 final size:49
Alignment explanation
Indices: 7174640--7174735 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
7174630 AGAATGTACG
* * **
7174640 AGTTATGGTTCTTGTTGTAATGAATTATCCATCCAAACTAAATGAAGCC
1 AGTTATGGTTCTTGCTGCAATGAACCATCCATCCAAACTAAATGAAGCC
7174689 AGTTATGGTTCTTGCTGCAATGAACCATCCATCCAAACTAAATGAAG
1 AGTTATGGTTCTTGCTGCAATGAACCATCCATCCAAACTAAATGAAG
7174736 TCATACTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (49 bp):
AGTTATGGTTCTTGCTGCAATGAACCATCCATCCAAACTAAATGAAGCC
Found at i:7178354 original size:10 final size:11
Alignment explanation
Indices: 7178325--7178360 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
7178315 GATTTAACTC
*
7178325 TGTGATTTTAT
1 TGTGATTTGAT
7178336 TGTGATTTGAT
1 TGTGATTTGAT
7178347 T-TGATTTGAT
1 TGTGATTTGAT
7178357 TGTG
1 TGTG
7178361 CTATTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.58
Consensus pattern (11 bp):
TGTGATTTGAT
Found at i:7178475 original size:13 final size:13
Alignment explanation
Indices: 7178457--7178487 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7178447 CTAAAAATAA
7178457 TAAAAACCAAAAT
1 TAAAAACCAAAAT
7178470 TAAAAACCAAAAT
1 TAAAAACCAAAAT
7178483 TAAAA
1 TAAAA
7178488 CTAAAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.71, C:0.13, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAACCAAAAT
Found at i:7178487 original size:12 final size:12
Alignment explanation
Indices: 7178459--7178499 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
7178449 AAAAATAATA
7178459 AAAACCAAAATT
1 AAAACCAAAATT
7178471 AAAAACCAAAATT
1 -AAAACCAAAATT
* *
7178484 AAAACTAAAATC
1 AAAACCAAAATT
7178496 AAAA
1 AAAA
7178500 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAACCAAAATT
Found at i:7178691 original size:29 final size:30
Alignment explanation
Indices: 7178645--7178701 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
7178635 AAATGTTCAA
* *
7178645 CAAAAAATTCATATAAAAACT-TAAAAAAC
1 CAAAAAATTCATAAAAAAAATCTAAAAAAC
7178674 CAAAAAATTCCA-AAAAAAAATCTAAAAA
1 CAAAAAATT-CATAAAAAAAATCTAAAAA
7178702 TTTTAGCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.68, C:0.14, G:0.00, T:0.18
Consensus pattern (30 bp):
CAAAAAATTCATAAAAAAAATCTAAAAAAC
Found at i:7179921 original size:17 final size:18
Alignment explanation
Indices: 7179901--7179945 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
7179891 TAAAAGTTCT
7179901 ATATTCACAAAG-GTTTC
1 ATATTCACAAAGAGTTTC
* *
7179918 ATATTCGCAAAGATTTTC
1 ATATTCACAAAGAGTTTC
*
7179936 AAATTCACAA
1 ATATTCACAA
7179946 GAATTTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (18 bp):
ATATTCACAAAGAGTTTC
Found at i:7179964 original size:18 final size:18
Alignment explanation
Indices: 7179914--7179966 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
7179904 TTCACAAAGG
*
7179914 TTTCATATTCGCAA-AGAT
1 TTTCAAATTCGCAAGA-AT
*
7179932 TTTCAAATTCACAAGAAT
1 TTTCAAATTCGCAAGAAT
*
7179950 TTTTAAATTCGCAAGAA
1 TTTCAAATTCGCAAGAA
7179967 CTCATATTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 29 0.97
19 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (18 bp):
TTTCAAATTCGCAAGAAT
Found at i:7180088 original size:16 final size:17
Alignment explanation
Indices: 7180063--7180098 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7180053 AATTTTAAAA
*
7180063 ATTCGTAAGAATTT-AG
1 ATTCGCAAGAATTTCAG
7180079 ATTCGCAAGAATTTCAG
1 ATTCGCAAGAATTTCAG
7180096 ATT
1 ATT
7180099 TGTAAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (17 bp):
ATTCGCAAGAATTTCAG
Found at i:7180160 original size:18 final size:18
Alignment explanation
Indices: 7180137--7180185 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
7180127 AAAACTTCAT
7180137 ATTCACAAGAATTTTTAG
1 ATTCACAAGAATTTTTAG
7180155 ATTCACAAGAATTTTTAG
1 ATTCACAAGAATTTTTAG
7180173 ATTCACAAGAATT
1 ATTCACAAGAATT
7180186 CATATTTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (18 bp):
ATTCACAAGAATTTTTAG
Found at i:7180454 original size:24 final size:24
Alignment explanation
Indices: 7180427--7180536 Score: 104
Period size: 22 Copynumber: 4.8 Consensus size: 24
7180417 TTTTCATTCG
* *
7180427 AAAAAAATTTAGAGATTCACATCC
1 AAAAAATTTTAAAGATTCACATCC
** *
7180451 --AAAATTTTAAAGATTCTTATTC
1 AAAAAATTTTAAAGATTCACATCC
*
7180473 AAAAAATTTTAAAGTTTCACAT-C
1 AAAAAATTTTAAAGATTCACATCC
*
7180496 -TAAAATTTTAAAGATTCACA-CGC
1 AAAAAATTTTAAAGATTCACATC-C
*
7180519 AAAAAATTTTAGAGATTC
1 AAAAAATTTTAAAGATTC
7180537 CTAAACAAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
22 35 0.51
23 2 0.03
24 32 0.46
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (24 bp):
AAAAAATTTTAAAGATTCACATCC
Found at i:7180459 original size:22 final size:23
Alignment explanation
Indices: 7180429--7180558 Score: 97
Period size: 22 Copynumber: 5.7 Consensus size: 23
7180419 TTCATTCGAA
* *
7180429 AAAAATTTAGAGATTCACATC-C
1 AAAATTTTAAAGATTCACATCAC
** *
7180451 AAAATTTTAAAGATTCTTATTCAA
1 AAAATTTTAAAGATTCACA-TCAC
* *
7180475 AAAATTTTAAAGTTTCACATC-T
1 AAAATTTTAAAGATTCACATCAC
* *
7180497 AAAATTTTAAAGATTCACACGCAA
1 AAAATTTTAAAGATTCACA-TCAC
* *
7180521 AAAATTTTAGAGATTC-C-TAAAC
1 AAAATTTTAAAGATTCACAT-CAC
*
7180543 AAAATTTTAAATATTC
1 AAAATTTTAAAGATTC
7180559 TCATTCGAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
22 48 0.56
23 6 0.07
24 31 0.36
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (23 bp):
AAAATTTTAAAGATTCACATCAC
Found at i:7180477 original size:46 final size:46
Alignment explanation
Indices: 7180352--7180576 Score: 190
Period size: 46 Copynumber: 4.9 Consensus size: 46
7180342 ATTTAAGGGC
* * * *
7180352 TCACATCCAGAA-TTCAAAGATTGTTATTCAAAAAATTTTAGAGGT
1 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAGAGAT
* * * *
7180397 TCGCA-CTTAAAA-GTTAAAGATT-TTCATTCGAAAAAAATTTAGAGAT
1 TCACATC-CAAAATTTTAAAGATTCTT-ATTC-AAAAAATTTTAGAGAT
* *
7180443 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAAAGTT
1 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAGAGAT
* ** **
7180489 TCACATCTAAAATTTTAAAGATTCACACGCAAAAAATTTTAGAGAT
1 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAGAGAT
** * * * *
7180535 TC-CTAAACAAAATTTTAAATATTCTCATTCGAAAGATTTTAG
1 TCAC-ATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAG
7180577 TGACTATATC
Statistics
Matches: 144, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
44 3 0.02
45 20 0.14
46 105 0.73
47 14 0.10
48 2 0.01
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (46 bp):
TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAGAGAT
Found at i:7180500 original size:92 final size:92
Alignment explanation
Indices: 7180352--7180575 Score: 233
Period size: 92 Copynumber: 2.4 Consensus size: 92
7180342 ATTTAAGGGC
* * * * *
7180352 TCACATCCAGAA-TTCAAAGATTGTTATTCAAAAAATTTTAGAGGTTCGCACTTAAAA-GTTAAA
1 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAAAGGTTCACACTTAAAATGTTAAA
**
7180415 GATTTTCATTCG-AAAAAAATTTAGAGAT
66 GA--TTCACACGCAAAAAAATTTAGAGAT
* *
7180443 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAAAGTTTCACA-TCTAAAATTTTAA
1 TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAAAGGTTCACACT-TAAAATGTTAA
*
7180507 AGATTCACACGCAAAAAATTTTAGAGAT
65 AGATTCACACGCAAAAAAATTTAGAGAT
** * * * *
7180535 TC-CTAAACAAAATTTTAAATATTCTCATTCGAAAGATTTTA
1 TCAC-ATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTA
7180576 GTGACTATAT
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
91 19 0.17
92 86 0.77
93 7 0.06
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (92 bp):
TCACATCCAAAATTTTAAAGATTCTTATTCAAAAAATTTTAAAGGTTCACACTTAAAATGTTAAA
GATTCACACGCAAAAAAATTTAGAGAT
Found at i:7185194 original size:27 final size:28
Alignment explanation
Indices: 7185150--7185203 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
7185140 GTTAGTAGGC
*
7185150 ACATAATATATACAAAGAACAACATAAT
1 ACATAATAAATACAAAGAACAACATAAT
7185178 ACAT-ATAAATACAAAGAACAACATAA
1 ACATAATAAATACAAAGAACAACATAA
7185204 AAGGTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.63, C:0.15, G:0.04, T:0.19
Consensus pattern (28 bp):
ACATAATAAATACAAAGAACAACATAAT
Found at i:7186574 original size:13 final size:14
Alignment explanation
Indices: 7186547--7186576 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7186537 AAACAAAAAT
7186547 TATCATGCAAATAA
1 TATCATGCAAATAA
7186561 TATCATGC-AATAA
1 TATCATGCAAATAA
7186574 TAT
1 TAT
7186577 AGTAAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (14 bp):
TATCATGCAAATAA
Found at i:7186659 original size:13 final size:13
Alignment explanation
Indices: 7186638--7186684 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
7186628 TATAATTATT
* *
7186638 AAAATATAAATAT
1 AAAAAATAAATAA
*
7186651 AAAAAATAAAAACA
1 AAAAAATAAATA-A
7186665 AAAAAATAAATAA
1 AAAAAATAAATAA
7186678 AAAAAAT
1 AAAAAAT
7186685 TCAAAGCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAAATAAATAA
Found at i:7186695 original size:27 final size:27
Alignment explanation
Indices: 7186638--7186709 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
7186628 TATAATTATT
* *
7186638 AAAATATAAATATAAAAAATAAAAACA
1 AAAAAATAAATAAAAAAAATAAAAACA
* *
7186665 AAAAAATAAATAAAAAAAATTCAAAGCA
1 AAAAAATAAATAAAAAAAA-TAAAAACA
7186693 AAAAAA-AAA-AAAAAAAA
1 AAAAAATAAATAAAAAAAA
7186710 CATGCGATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.20
27 20 0.50
28 12 0.30
ACGTcount: A:0.82, C:0.04, G:0.01, T:0.12
Consensus pattern (27 bp):
AAAAAATAAATAAAAAAAATAAAAACA
Found at i:7187630 original size:16 final size:16
Alignment explanation
Indices: 7187609--7187647 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 16
7187599 TTTATCTTTG
7187609 ACTAAAAATAATAAAA
1 ACTAAAAATAATAAAA
7187625 ACT-AAAAT--TAAAA
1 ACTAAAAATAATAAAA
7187638 AC-AAAAATAA
1 ACTAAAAATAA
7187648 AAACTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.60
15 5 0.25
16 3 0.15
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (16 bp):
ACTAAAAATAATAAAA
Found at i:7187650 original size:25 final size:25
Alignment explanation
Indices: 7187618--7187686 Score: 104
Period size: 24 Copynumber: 2.8 Consensus size: 25
7187608 GACTAAAAAT
7187618 AATAAAAACTAAAATTAAAAACAAA
1 AATAAAAACTAAAATTAAAAACAAA
*
7187643 AATAAAAACT-AAATTAAAAACCAA
1 AATAAAAACTAAAATTAAAAACAAA
* *
7187667 AATTAAAACTAAAATCAAAA
1 AATAAAAACTAAAATTAAAA
7187687 TTAAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 22 0.55
25 18 0.45
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.17
Consensus pattern (25 bp):
AATAAAAACTAAAATTAAAAACAAA
Found at i:7187675 original size:12 final size:12
Alignment explanation
Indices: 7187622--7187686 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 12
7187612 AAAAATAATA
*
7187622 AAAACTAAAATT
1 AAAACCAAAATT
* *
7187634 AAAAACAAAAAT
1 AAAACCAAAATT
* *
7187646 AAAAACTAAATT
1 AAAACCAAAATT
7187658 AAAAACCAAAATT
1 -AAAACCAAAATT
* *
7187671 AAAACTAAAATC
1 AAAACCAAAATT
7187683 AAAA
1 AAAA
7187687 TTAAAAATTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
12 33 0.77
13 10 0.23
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAACCAAAATT
Found at i:7187693 original size:13 final size:12
Alignment explanation
Indices: 7187620--7187674 Score: 74
Period size: 12 Copynumber: 4.4 Consensus size: 12
7187610 CTAAAAATAA
7187620 TAAAAACTAAAAT
1 TAAAAAC-AAAAT
*
7187633 TAAAAACAAAAA
1 TAAAAACAAAAT
*
7187645 TAAAAACTAAAT
1 TAAAAACAAAAT
7187657 TAAAAACCAAAAT
1 TAAAAA-CAAAAT
7187670 TAAAA
1 TAAAA
7187675 CTAAAATCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
12 20 0.54
13 17 0.46
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (12 bp):
TAAAAACAAAAT
Found at i:7187872 original size:15 final size:15
Alignment explanation
Indices: 7187849--7187893 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
7187839 TTATGATAAT
7187849 TAAATAATTTTTAAA
1 TAAATAATTTTTAAA
* *
7187864 TATATAATTTTTTAA
1 TAAATAATTTTTAAA
*
7187879 TAAAT-ATCTTTAAA
1 TAAATAATTTTTAAA
7187893 T
1 T
7187894 TAAAAAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 8 0.32
15 17 0.68
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
TAAATAATTTTTAAA
Found at i:7189677 original size:23 final size:23
Alignment explanation
Indices: 7189651--7189697 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7189641 AAAAAGTAAA
*
7189651 AAAATAAAATAAAAT-ATAATTTT
1 AAAATAAAA-AAAATAAAAATTTT
*
7189674 AAAATATAAAAAATAAAAATTTT
1 AAAATAAAAAAAATAAAAATTTT
7189697 A
1 A
7189698 GATATTCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
AAAATAAAAAAAATAAAAATTTT
Found at i:7198199 original size:2 final size:2
Alignment explanation
Indices: 7198192--7198218 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7198182 CATTAAACTT
7198192 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7198219 TTTGCTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7199322 original size:16 final size:15
Alignment explanation
Indices: 7199298--7199328 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7199288 TTCAACCAAA
7199298 TTTTTATTTTTTATT
1 TTTTTATTTTTTATT
7199313 TTTTTGATTTTTTATT
1 TTTTT-ATTTTTTATT
7199329 GAAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (15 bp):
TTTTTATTTTTTATT
Found at i:7199584 original size:29 final size:30
Alignment explanation
Indices: 7199539--7199598 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
7199529 TTAATCATGC
*
7199539 AAAAATACTAAGAAAAATAAACACATAAAT
1 AAAAATACTAAGAAAAATAAACAAATAAAT
*
7199569 AAAAA-ACTAA-ATAAAATAAATAAATAAAT
1 AAAAATACTAAGA-AAAATAAACAAATAAAT
7199598 A
1 A
7199599 CCAAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 21 0.78
30 5 0.19
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (30 bp):
AAAAATACTAAGAAAAATAAACAAATAAAT
Found at i:7199585 original size:17 final size:17
Alignment explanation
Indices: 7199565--7199598 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7199555 ATAAACACAT
7199565 AAATAAA-AAACTAAATA
1 AAATAAATAAA-TAAATA
7199582 AAATAAATAAATAAATA
1 AAATAAATAAATAAATA
7199599 CCAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAATAAATAAATA
Found at i:7199613 original size:29 final size:28
Alignment explanation
Indices: 7199551--7199618 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
7199541 AAATACTAAG
*
7199551 AAAAATAAACACATAAATAAAAAACTAAA
1 AAAAATAAACAAATAAATAAAAAAC-AAA
* *
7199580 TAAAATAAATAAATAAATACCAAAAA-AAA
1 AAAAATAAACAAATAAATA--AAAAACAAA
7199609 AAAAA-AAACA
1 AAAAATAAACA
7199619 GCTCGACTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 4 0.12
29 23 0.72
31 5 0.16
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (28 bp):
AAAAATAAACAAATAAATAAAAAACAAA
Found at i:7200452 original size:22 final size:21
Alignment explanation
Indices: 7200422--7200480 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
7200412 GATTATCAAT
7200422 TAAAAATAAAATAAATAAAAAA
1 TAAAAATAAAATAAA-AAAAAA
* *
7200444 TCAAAATAAAATTAAAAAAAA
1 TAAAAATAAAATAAAAAAAAA
*
7200465 TAAACAAAAAAATAAA
1 TAAA-AATAAAATAAA
7200481 CAGTTGGGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 9 0.29
22 22 0.71
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (21 bp):
TAAAAATAAAATAAAAAAAAA
Found at i:7200460 original size:28 final size:27
Alignment explanation
Indices: 7200422--7200480 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
7200412 GATTATCAAT
*
7200422 TAAAAATAAAATAAATAAA-AAATCAAAA
1 TAAAAATAAAAAAAATAAACAAA--AAAA
*
7200450 TAAAATTAAAAAAAATAAACAAAAAAA
1 TAAAAATAAAAAAAATAAACAAAAAAA
7200477 TAAA
1 TAAA
7200481 CAGTTGGGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 17 0.61
29 3 0.11
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (27 bp):
TAAAAATAAAAAAAATAAACAAAAAAA
Found at i:7200473 original size:12 final size:12
Alignment explanation
Indices: 7200458--7200482 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7200448 AATAAAATTA
7200458 AAAAAAATAAAC
1 AAAAAAATAAAC
7200470 AAAAAAATAAAC
1 AAAAAAATAAAC
7200482 A
1 A
7200483 GTTGGGCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAAAAATAAAC
Found at i:7200885 original size:42 final size:41
Alignment explanation
Indices: 7200838--7201193 Score: 231
Period size: 41 Copynumber: 8.6 Consensus size: 41
7200828 TTAAATAGAA
7200838 GCTCAACAACTTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
1 GCTCAACAAC-TTTGAAAAATAAAAGGCTTCTCTAAACAAAG
* *
7200880 ACTCAACGACTTTGAAAAATAAAAGG-TTCTCTAAACAAAG
1 GCTCAACAACTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
* * * * *
7200920 GCACAAGAACTTTGGAAAATAAATCAAGCTTCTCTAAACAGAG
1 GCTCAACAACTTTGAAAAATAAA--AGGCTTCTCTAAACAAAG
** * * *
7200963 GCTCAATGACTTTGAAAAATAAATAATG-TTCCTCTAAATAGAG
1 GCTCAACAACTTTGAAAAAT-AA-AAGGCTT-CTCTAAACAAAG
* ** * *
7201006 GCTCAATAACTTTGAAAAATAAAAGGCTGATATAAATAAAG
1 GCTCAACAACTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
* * * * * *
7201047 GCACAATAACTCTGAAAAACAAAATG-TTCCTCTAAATAAAG
1 GCTCAACAACTTTGAAAAATAAAAGGCTT-CTCTAAACAAAG
* * * * * * *
7201088 G-TATAACAACTCTAAAAAATAAAATGCTCCTTTAAACAGAG
1 GCT-CAACAACTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
* * * * * *
7201129 GCGCAACAGCTTT-AGAAAATAAAAAGC-TCATTTAAATAGAG
1 GCTCAACAACTTTGA-AAAATAAAAGGCTTC-TCTAAACAAAG
*
7201170 GCAT-AATAACTTTGAAAAATAAAA
1 GC-TCAACAACTTTGAAAAATAAAA
7201194 AGCTCATCGA
Statistics
Matches: 252, Mismatches: 47, Indels: 31
0.76 0.14 0.09
Matches are distributed among these distances:
40 35 0.14
41 136 0.54
42 17 0.07
43 61 0.24
44 2 0.01
45 1 0.00
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (41 bp):
GCTCAACAACTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
Found at i:7200938 original size:41 final size:40
Alignment explanation
Indices: 7200838--7201088 Score: 200
Period size: 43 Copynumber: 6.0 Consensus size: 40
7200828 TTAAATAGAA
*
7200838 GCTCAACAACTTTTGAAAAATAAAAGGCTTCTCTAAACAAAG
1 GCTCAAGAAC-TTTGAAAAATAAAAGG-TTCTCTAAACAAAG
*
7200880 ACTCAACG-ACTTTGAAAAATAAAAGGTTCTCTAAACAAAG
1 GCTCAA-GAACTTTGAAAAATAAAAGGTTCTCTAAACAAAG
* * * *
7200920 GCACAAGAACTTTGGAAAATAAATCAAGCTTCTCTAAACAGAG
1 GCTCAAGAACTTTGAAAAAT-AA--AAGGTTCTCTAAACAAAG
* * *
7200963 GCTCAATG-ACTTTGAAAAATAAATAATGTTCCTCTAAATAGAG
1 GCTCAA-GAACTTTGAAAAAT-AA-AAGGTT-CTCTAAACAAAG
* ** * *
7201006 GCTCAATAACTTTGAAAAATAAAAGGCTGATATAAATAAAG
1 GCTCAAGAACTTTGAAAAATAAAAGG-TTCTCTAAACAAAG
* * * * * *
7201047 GCACAATAACTCTGAAAAACAAAATGTTCCTCTAAATAAAG
1 GCTCAAGAACTTTGAAAAATAAAAGGTT-CTCTAAACAAAG
7201088 G
1 G
7201089 TATAACAACT
Statistics
Matches: 173, Mismatches: 26, Indels: 21
0.79 0.12 0.10
Matches are distributed among these distances:
39 1 0.01
40 30 0.17
41 63 0.36
42 14 0.08
43 64 0.37
44 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (40 bp):
GCTCAAGAACTTTGAAAAATAAAAGGTTCTCTAAACAAAG
Found at i:7200956 original size:83 final size:86
Alignment explanation
Indices: 7200849--7201028 Score: 235
Period size: 83 Copynumber: 2.2 Consensus size: 86
7200839 CTCAACAACT
*
7200849 TTTGAAAAATAAA--AGGCTTCTCTAAACAAAGACTCAACGACTTTGAAAAAT-AA-AAGGTT-C
1 TTTGAAAAATAAATCAAGCTTCTCTAAACAAAGACTCAACGACTTTGAAAAATAAATAAGGTTCC
7200909 TCTAAACAAAGGCACAAGAAC
66 TCTAAACAAAGGCACAAGAAC
* * * * *
7200930 TTTGGAAAATAAATCAAGCTTCTCTAAACAGAGGCTCAATGACTTTGAAAAATAAATAATGTTCC
1 TTTGAAAAATAAATCAAGCTTCTCTAAACAAAGACTCAACGACTTTGAAAAATAAATAAGGTTCC
* * * *
7200995 TCTAAATAGAGGCTCAATAAC
66 TCTAAACAAAGGCACAAGAAC
7201016 TTTGAAAAATAAA
1 TTTGAAAAATAAA
7201029 AGGCTGATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
81 12 0.14
83 34 0.41
84 2 0.02
85 5 0.06
86 30 0.36
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (86 bp):
TTTGAAAAATAAATCAAGCTTCTCTAAACAAAGACTCAACGACTTTGAAAAATAAATAAGGTTCC
TCTAAACAAAGGCACAAGAAC
Found at i:7201737 original size:23 final size:24
Alignment explanation
Indices: 7201704--7201769 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
7201694 TCAAAGATTA
7201704 TCAAAGATTCTTATTTAAAA-AAC
1 TCAAAGATTCTTATTTAAAATAAC
* * *
7201727 TCAAAGGTTCTCATTTGAAAATATC
1 TCAAAGATTCTTATTT-AAAATAAC
*
7201752 TTAAAGATTCTTATTTAA
1 TCAAAGATTCTTATTTAA
7201770 GATTCAAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
23 14 0.40
24 6 0.17
25 15 0.43
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (24 bp):
TCAAAGATTCTTATTTAAAATAAC
Found at i:7201800 original size:21 final size:21
Alignment explanation
Indices: 7201704--7201798 Score: 64
Period size: 23 Copynumber: 4.2 Consensus size: 21
7201694 TCAAAGATTA
* * *
7201704 TCAAAGATTCTTATTTAAAAAAC
1 TCAAAGATTCTCATTT--AAGAT
* *
7201727 TCAAAGGTTCTCATTTGAAAAT
1 TCAAAGATTCTCATTT-AAGAT
*
7201749 ATCTTAAAGATTCTTATTTAAGAT
1 -TC--AAAGATTCTCATTTAAGAT
*
7201773 TCAAAGATTCTCATTTGAGGAT
1 TCAAAGATTCTCATTT-AAGAT
7201795 TCAA
1 TCAA
7201799 GACTTCATCA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
21 13 0.22
22 12 0.20
23 18 0.31
24 4 0.07
25 12 0.20
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.38
Consensus pattern (21 bp):
TCAAAGATTCTCATTTAAGAT
Found at i:7202225 original size:63 final size:63
Alignment explanation
Indices: 7202124--7202277 Score: 184
Period size: 63 Copynumber: 2.4 Consensus size: 63
7202114 TGAGCTTTTT
* * * *
7202124 AGCACTAGCAATTTTAAAACAAATTCTGT-CATCTATCACTTGATCACCACTCATAGGCTTCTC
1 AGCACTAGCCATTTCAAAACAAATTTTGTCCTTC-ATCACTTGATCACCACTCATAGGCTTCTC
* * * * * * *
7202187 AGCATTGGCCATTTCAAAAGAAATTTTGTCCTTCATCACTTGGTCACCAGTCATAGGTTTTTC
1 AGCACTAGCCATTTCAAAACAAATTTTGTCCTTCATCACTTGATCACCACTCATAGGCTTCTC
*
7202250 AGCACTAGCCATTTCAGAACAAATTTTG
1 AGCACTAGCCATTTCAAAACAAATTTTG
7202278 CCCACTGATC
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
63 72 0.96
64 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (63 bp):
AGCACTAGCCATTTCAAAACAAATTTTGTCCTTCATCACTTGATCACCACTCATAGGCTTCTC
Found at i:7203394 original size:9 final size:9
Alignment explanation
Indices: 7203363--7203401 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
7203353 GTGACATTCA
7203363 TTTTTTTTC
1 TTTTTTTTC
7203372 TTTTATTTTC
1 TTTT-TTTTC
7203382 -TTTTTTTC
1 TTTTTTTTC
7203390 TTTTTTTTC
1 TTTTTTTTC
7203399 TTT
1 TTT
7203402 CTATTTGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.18
9 18 0.64
10 5 0.18
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7203927 original size:22 final size:23
Alignment explanation
Indices: 7203902--7203948 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7203892 ATGAAATCCT
*
7203902 ATTAC-ATAAAAGAAATCCTAAC
1 ATTACTATAAAAAAAATCCTAAC
* *
7203924 ATTACTCTAAAAAAAATCTTAAC
1 ATTACTATAAAAAAAATCCTAAC
7203947 AT
1 AT
7203949 AACAAATAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.53, C:0.17, G:0.02, T:0.28
Consensus pattern (23 bp):
ATTACTATAAAAAAAATCCTAAC
Found at i:7207396 original size:26 final size:24
Alignment explanation
Indices: 7207342--7207389 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
7207332 TTTACCTAAG
* *
7207342 AATTTTATAAAAATTTATCATTTAA
1 AATTTT-TATAAATTTATCATTGAA
7207367 AATTTTTATAAATTTCATCATTG
1 AATTTTTATAAATTT-ATCATTG
7207390 GATAATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (24 bp):
AATTTTTATAAATTTATCATTGAA
Found at i:7208320 original size:11 final size:11
Alignment explanation
Indices: 7208304--7208328 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7208294 TATTATCAAC
7208304 TAAAAATAAAA
1 TAAAAATAAAA
7208315 TAAAAATAAAA
1 TAAAAATAAAA
7208326 TAA
1 TAA
7208329 GCCCATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:7209565 original size:30 final size:30
Alignment explanation
Indices: 7209529--7209585 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
7209519 TAGAACATGC
7209529 TACTGATACTGGCCATTTCTTCATAAGCCT
1 TACTGATACTGGCCATTTCTTCATAAGCCT
7209559 TACTGATACTGGCCATTTCTTCATAAG
1 TACTGATACTGGCCATTTCTTCATAAG
7209586 TCGCTGACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
TACTGATACTGGCCATTTCTTCATAAGCCT
Found at i:7217225 original size:14 final size:15
Alignment explanation
Indices: 7217197--7217227 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7217187 CCAAAGTCAC
7217197 CAGAAAAAATCAAAT
1 CAGAAAAAATCAAAT
7217212 CAGAAAAAAT-AAAT
1 CAGAAAAAATCAAAT
7217226 CA
1 CA
7217228 AAATCAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.68, C:0.13, G:0.06, T:0.13
Consensus pattern (15 bp):
CAGAAAAAATCAAAT
Done.