Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 28 of 160
Found at i:7217368 original size:2 final size:2
Alignment explanation
Indices: 7217361--7217407 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
7217351 TGGTCGTTCG
*
7217361 GA GA GA GA GA AA TGA -A G- GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7217402 GA GA GA
1 GA GA GA
7217408 AGGGGGGTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.47, T:0.02
Consensus pattern (2 bp):
GA
Found at i:7219569 original size:21 final size:22
Alignment explanation
Indices: 7219545--7219588 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7219535 TTTTGTTTAG
7219545 TTCATTTT-TTTTCACAAAGCA
1 TTCATTTTCTTTTCACAAAGCA
*
7219566 TTCATTTTCTTTTCACAGAGCA
1 TTCATTTTCTTTTCACAAAGCA
7219588 T
1 T
7219589 CTCAAATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.48
Consensus pattern (22 bp):
TTCATTTTCTTTTCACAAAGCA
Found at i:7219953 original size:27 final size:27
Alignment explanation
Indices: 7219888--7219954 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
7219878 ACATGTTTTT
*
7219888 TAAAATTTAAAAAATACAAAATGAAAA
1 TAAAATTAAAAAAATACAAAATGAAAA
* ** * *
7219915 TTATTTTCAAAAAAT-GAAAATAGAAAA
1 TAAAATTAAAAAAATACAAAAT-GAAAA
7219942 TAAAATTAAAAAA
1 TAAAATTAAAAAA
7219955 TATTTTCTAT
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.25
Consensus pattern (27 bp):
TAAAATTAAAAAAATACAAAATGAAAA
Found at i:7220354 original size:2 final size:2
Alignment explanation
Indices: 7220347--7220372 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7220337 TGAATATAAG
7220347 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7220373 TAATACAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7222600 original size:25 final size:25
Alignment explanation
Indices: 7222561--7222609 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7222551 ATTTTTTATG
*
7222561 AATATATTTTGTTCTTTTTAAAAAT
1 AATATATTTTGTTCTTTCTAAAAAT
7222586 AATATACTTTT-TTCTTTCTAAAAA
1 AATATA-TTTTGTTCTTTCTAAAAA
7222610 ACAATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (25 bp):
AATATATTTTGTTCTTTCTAAAAAT
Found at i:7223335 original size:68 final size:68
Alignment explanation
Indices: 7223256--7223390 Score: 164
Period size: 68 Copynumber: 2.0 Consensus size: 68
7223246 AAGGTTTTCA
* * *
7223256 ATTTATAATTCTATTATGCAAAGTTAACATATTTTTCAT-GTCTTTTAGCTCATATTTGCAATTT
1 ATTTATAATTCTATTATGCAAAGTTAACATA-TTTTCATACTCTTTTAGCTCAGATATGCAATTT
7223320 TTTT
65 TTTT
* * ** * * *
7223324 ATTTATGATTCTTTTATTTAAAGTTAGCATATTTTCATACTTTTTTGGCTCAGATATGCAATTTT
1 ATTTATAATTCTATTATGCAAAGTTAACATATTTTCATACTCTTTTAGCTCAGATATGCAATTTT
7223389 TT
66 TT
7223391 CTTTTTTTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 7 0.12
68 49 0.88
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (68 bp):
ATTTATAATTCTATTATGCAAAGTTAACATATTTTCATACTCTTTTAGCTCAGATATGCAATTTT
TTT
Found at i:7224492 original size:23 final size:22
Alignment explanation
Indices: 7224474--7224516 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7224464 TGGGTTATAC
*
7224474 GTTTATGGGATTTTAGGTTTGA
1 GTTTATAGGATTTTAGGTTTGA
*
7224496 GTTTTTAGGATTTTAGGTTTG
1 GTTTATAGGATTTTAGGTTTG
7224517 GATTTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.53
Consensus pattern (22 bp):
GTTTATAGGATTTTAGGTTTGA
Found at i:7228960 original size:14 final size:14
Alignment explanation
Indices: 7228941--7228971 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7228931 ACATCATCGA
7228941 ATTTATTAATATTT
1 ATTTATTAATATTT
*
7228955 ATTTATTATTATTT
1 ATTTATTAATATTT
7228969 ATT
1 ATT
7228972 AAAAAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTATTAATATTT
Found at i:7229394 original size:18 final size:18
Alignment explanation
Indices: 7229352--7229434 Score: 64
Period size: 18 Copynumber: 4.5 Consensus size: 18
7229342 AAAAAATAGT
*
7229352 AAAATTAAATAAAAATTG
1 AAAATAAAATAAAAATTG
7229370 AAAATAAAATAAAAAATTAAG
1 AAAATAAAAT-AAAAATT--G
* * *
7229391 ATAATAAAATAAATAAATC
1 AAAATAAAATAAA-AATTG
7229410 AAAA-AAAAT-AAAA-TG
1 AAAATAAAATAAAAATTG
7229425 AAAATGAAAA
1 AAAAT-AAAA
7229435 AAGAAAACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
15 5 0.09
16 2 0.04
17 6 0.11
18 14 0.26
19 10 0.19
20 3 0.06
21 13 0.25
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.20
Consensus pattern (18 bp):
AAAATAAAATAAAAATTG
Found at i:7230303 original size:3 final size:3
Alignment explanation
Indices: 7230276--7230398 Score: 109
Period size: 3 Copynumber: 43.0 Consensus size: 3
7230266 AGATTAGAAA
* *
7230276 AAT AA- AAT AA- AAT AA- AAA AAGT AAT AAT AAT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * *
7230319 TAT AAT -AT AAT AAT AAT AAT AAC AAT AGA- AAT -AT AAT -AC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* *
7230361 AAG AGT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7230399 GGTAATAGTT
Statistics
Matches: 97, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
2 14 0.14
3 80 0.82
4 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7230680 original size:55 final size:54
Alignment explanation
Indices: 7230616--7230726 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 54
7230606 TGAGCCACAG
* * * **
7230616 GTCAGAAAAATAATTTGGACTGAGCTGAGATCGAATAACCAGAACGAAATCGTGA
1 GTCAAAAAAATAATATAGACTGAGCCAAGATCGAATAACCAGAACGAAA-CGTGA
* * * *
7230671 GTCAAAAAAATGATATAGACTGAGCCAAGATCGAATGACCTGAATGAAACGTGA
1 GTCAAAAAAATAATATAGACTGAGCCAAGATCGAATAACCAGAACGAAACGTGA
7230725 GT
1 GT
7230727 ATAAAAGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
54 7 0.15
55 40 0.85
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (54 bp):
GTCAAAAAAATAATATAGACTGAGCCAAGATCGAATAACCAGAACGAAACGTGA
Found at i:7231295 original size:120 final size:121
Alignment explanation
Indices: 7231113--7231332 Score: 316
Period size: 120 Copynumber: 1.8 Consensus size: 121
7231103 ACAAAATTGT
*
7231113 AAGTCTAAAAGATAAAGCAACCAAGACCGAGTCGAGGTTAAAGATGAATGACAAAGACAAAATCA
1 AAGTCTAAAAGATAAAGCAACCAAGACCGAGTCGAGGTCAAAGATGAATGACAAAGACAAAATCA
* *
7231178 CGAGTCAAAAAAATGATCTAGACGAAGTCGAGATCAAACAAAGGAGACGAAACCAC
66 CGAGTCAAAAAAATAATCTAGACGAAGGCGAGATCAAACAAAGGAGACGAAACCAC
** * * * * *
7231234 AAGTCT-AAAGATAAAGTGATCAAGATCGAGTCGAGGTCGAAGATGAATGACCAAGATAAAATCA
1 AAGTCTAAAAGATAAAGCAACCAAGACCGAGTCGAGGTCAAAGATGAATGACAAAGACAAAATCA
* * *
7231298 CGAGTCAAGAAAATAATCTGGACTAAGGCGAGATC
66 CGAGTCAAAAAAATAATCTAGACGAAGGCGAGATC
7231333 GACATAAGTG
Statistics
Matches: 86, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
120 80 0.93
121 6 0.07
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.15
Consensus pattern (121 bp):
AAGTCTAAAAGATAAAGCAACCAAGACCGAGTCGAGGTCAAAGATGAATGACAAAGACAAAATCA
CGAGTCAAAAAAATAATCTAGACGAAGGCGAGATCAAACAAAGGAGACGAAACCAC
Found at i:7236879 original size:17 final size:18
Alignment explanation
Indices: 7236856--7236905 Score: 75
Period size: 17 Copynumber: 2.8 Consensus size: 18
7236846 CCAAAAAGAA
7236856 AAAAATTAAATAAAAAAC
1 AAAAATTAAATAAAAAAC
7236874 -AAAATTAAATAAAAAAC
1 AAAAATTAAATAAAAAAC
*
7236891 TAAAAATAAAATAAA
1 -AAAAATTAAATAAA
7236906 TAAATAAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 17 0.59
19 12 0.41
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAATTAAATAAAAAAC
Found at i:7236947 original size:16 final size:16
Alignment explanation
Indices: 7236903--7236949 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
7236893 AAAATAAAAT
7236903 AAATAAATAAGATAATA
1 AAATAAATAA-ATAATA
*
7236920 AAATAAATAAATAATG
1 AAATAAATAAATAATA
7236936 AAATCAAA-AAATAA
1 AAAT-AAATAAATAA
7236950 AATGAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.21
Consensus pattern (16 bp):
AAATAAATAAATAATA
Found at i:7236957 original size:13 final size:12
Alignment explanation
Indices: 7236855--7236957 Score: 77
Period size: 13 Copynumber: 8.4 Consensus size: 12
7236845 TCCAAAAAGA
*
7236855 AAAAAATTAAAT
1 AAAAAATAAAAT
*
7236867 AAAAAACAAAATT
1 AAAAAATAAAA-T
*
7236880 AAATAAA-AAACT
1 AAA-AAATAAAAT
7236892 -AAAAATAAAAT
1 AAAAAATAAAAT
*
7236903 AAATAAATAAGAT
1 AAA-AAATAAAAT
7236916 AATAAAAT-AAAT
1 AA-AAAATAAAAT
* *
7236928 AAATAATGAAAT
1 AAAAAATAAAAT
7236940 CAAAAAATAAAAT
1 -AAAAAATAAAAT
*
7236953 GAAAA
1 AAAAA
7236958 TAGAAAAGCA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
10 3 0.04
11 10 0.14
12 25 0.34
13 31 0.42
14 4 0.05
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:7237296 original size:85 final size:85
Alignment explanation
Indices: 7237198--7237367 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
7237188 AAACTGAAAA
7237198 ACCCTTTCAGTTTTTGGAAAACTGATCGAAATGTGATCGAAAAATTCAACCTTCTGCTGAAAAAT
1 ACCCTTTCAGTTTTTGGAAAACTGATCGAAATGTGATCGAAAAATTCAACCTTCTGCTGAAAAAT
7237263 TCATCGAAAACTTCAAACAT
66 TCATCGAAAACTTCAAACAT
7237283 ACCCTTTCAGTTTTTGGAAAACTGATCGAAATGTGATCGAAAAATTCAACCTTCTGCTGAAAAAT
1 ACCCTTTCAGTTTTTGGAAAACTGATCGAAATGTGATCGAAAAATTCAACCTTCTGCTGAAAAAT
7237348 TCATCGAAAACTTCAAACAT
66 TCATCGAAAACTTCAAACAT
7237368 TCATCCAAAA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (85 bp):
ACCCTTTCAGTTTTTGGAAAACTGATCGAAATGTGATCGAAAAATTCAACCTTCTGCTGAAAAAT
TCATCGAAAACTTCAAACAT
Found at i:7237489 original size:20 final size:20
Alignment explanation
Indices: 7237466--7237524 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
7237456 AACCTTCAAC
7237466 CTAATCCTAGAAACCTAAAT
1 CTAATCCTAGAAACCTAAAT
*
7237486 CTAATCCCAGAAACCTCAAAT
1 CTAATCCTAGAAACCT-AAAT
* *
7237507 C-AATCCTGGAATCCTAAA
1 CTAATCCTAGAAACCTAAA
7237525 AATCAAAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.09
20 26 0.76
21 5 0.15
ACGTcount: A:0.42, C:0.29, G:0.07, T:0.22
Consensus pattern (20 bp):
CTAATCCTAGAAACCTAAAT
Found at i:7237891 original size:3 final size:3
Alignment explanation
Indices: 7237885--7237955 Score: 71
Period size: 3 Copynumber: 25.0 Consensus size: 3
7237875 AAATAAAAAA
* * *
7237885 AAT AAT AAC AGT AAT AAT AAT AAC AAT AAT AAT -AT AAT AAT AAT AGA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
7237932 AAT -AT AAT -AT AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7237956 GGTAATAGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
2 9 0.16
3 46 0.82
4 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7237923 original size:5 final size:5
Alignment explanation
Indices: 7237913--7237981 Score: 52
Period size: 5 Copynumber: 13.2 Consensus size: 5
7237903 AATAACAATA
* *
7237913 ATAAT ATAAT AATAAT AGAAAT ATAAT ATAAT ATAAT AATAAT GGTAAT
1 ATAAT ATAAT -ATAAT A-TAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT
*
7237962 AGT--T ATACT ATAAT ATAAT A
1 A-TAAT ATAAT ATAAT ATAAT A
7237982 ATATATGGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
3 1 0.02
4 2 0.04
5 30 0.58
6 19 0.37
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:7237926 original size:35 final size:35
Alignment explanation
Indices: 7237885--7237953 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
7237875 AAATAAAAAA
*
7237885 AATAATAACAGTAATAATAATA-ACA-ATAATAATAT
1 AATAATAACAGAAAT-ATAATATA-ATATAATAATAT
*
7237920 AATAATAATAGAAATATAATATAATATAATAATA
1 AATAATAACAGAAATATAATATAATATAATAATA
7237954 ATGGTAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (35 bp):
AATAATAACAGAAATATAATATAATATAATAATAT
Found at i:7239192 original size:22 final size:23
Alignment explanation
Indices: 7239167--7239215 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
7239157 AGAGGTGTGG
*
7239167 AAAAAAAAC-T-AAAAAATGAAA
1 AAAAAAAACATAAAAAAAAGAAA
7239188 AAAAAAAACATAAAAAAAAGAAA
1 AAAAAAAACATAAAAAAAAGAAA
7239211 AAAAA
1 AAAAA
7239216 GAAATACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.36
22 1 0.04
23 15 0.60
ACGTcount: A:0.86, C:0.04, G:0.04, T:0.06
Consensus pattern (23 bp):
AAAAAAAACATAAAAAAAAGAAA
Found at i:7240652 original size:65 final size:65
Alignment explanation
Indices: 7240522--7240652 Score: 140
Period size: 65 Copynumber: 2.0 Consensus size: 65
7240512 AAATTTTGAC
* * * * * *
7240522 TTTTATTTTTTAGACTTGCGGTTTAATCTCGATCACTCGTTTCGATCTCAACTTAGTCTAGATCA
1 TTTTATTTTTTAGACCTACGGTTCAATCTCGATCACTCATTTCGATCTCAACTCAGTCTAAATCA
* * * *
7240587 TTTTATTTTTCTA-ACCTACGGTTCAATCTTGATCACTTATTTTGATCTTAACTCAGT-TCAAAT
1 TTTTATTTTT-TAGACCTACGGTTCAATCTCGATCACTCATTTCGATCTCAACTCAGTCT-AAAT
7240650 CA
64 CA
7240652 T
1 T
7240653 CTTTCTGACT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
64 1 0.02
65 51 0.94
66 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.46
Consensus pattern (65 bp):
TTTTATTTTTTAGACCTACGGTTCAATCTCGATCACTCATTTCGATCTCAACTCAGTCTAAATCA
Found at i:7241169 original size:3 final size:3
Alignment explanation
Indices: 7241161--7241212 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
7241151 TAGGGTCAAC
7241161 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7241209 TAT T
1 TAT T
7241213 TGCTTTCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7242091 original size:22 final size:23
Alignment explanation
Indices: 7242066--7242111 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7242056 TATTTTTACC
*
7242066 ATTTTA-TTTTTTAAGTTTTTTT
1 ATTTTACTTTGTTAAGTTTTTTT
* *
7242088 ATTTTACTTTGTTGATTTTTTTT
1 ATTTTACTTTGTTAAGTTTTTTT
7242111 A
1 A
7242112 AATTAAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (23 bp):
ATTTTACTTTGTTAAGTTTTTTT
Found at i:7252083 original size:22 final size:22
Alignment explanation
Indices: 7252057--7252100 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7252047 TATATATTTA
**
7252057 TATTTGTATCTTTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7252079 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7252101 GACAGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7252986 original size:22 final size:22
Alignment explanation
Indices: 7252961--7253002 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7252951 TGTATATTTA
* *
7252961 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
7252983 TATTTGTATCCCTAAAATTA
1 TATTTGTATCCCTAAAATTA
7253003 GGATAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:7262804 original size:3 final size:3
Alignment explanation
Indices: 7262796--7262833 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7262786 TAAAAGCAAA
*
7262796 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7262834 ATAAAACTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7268656 original size:8 final size:8
Alignment explanation
Indices: 7268639--7268677 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
7268629 TCATTTGTCT
7268639 GTGTGTGG
1 GTGTGTGG
*
7268647 GTGTGCGG
1 GTGTGTGG
7268655 GTGTGTGG
1 GTGTGTGG
7268663 GTGTGTGG
1 GTGTGTGG
7268671 GTGTGTG
1 GTGTGTG
7268678 TAAGGTCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.62, T:0.36
Consensus pattern (8 bp):
GTGTGTGG
Found at i:7275174 original size:13 final size:13
Alignment explanation
Indices: 7275156--7275206 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
7275146 TATCTCTATT
7275156 TTTTTTTCTGTCA
1 TTTTTTTCTGTCA
*
7275169 TTTTTTT-TGGATAAA
1 TTTTTTTCT-G-T-CA
*
7275184 TTTTTTTCTCTCA
1 TTTTTTTCTGTCA
7275197 TTTTTTTCTG
1 TTTTTTTCTG
7275207 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.03
13 18 0.60
14 2 0.07
15 8 0.27
16 1 0.03
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.69
Consensus pattern (13 bp):
TTTTTTTCTGTCA
Found at i:7276583 original size:30 final size:30
Alignment explanation
Indices: 7276522--7276583 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
7276512 GAAACTATCA
* *
7276522 GGTAATTGATTTTGCTACGATGGATGGAAT
1 GGTAATTGATTTTGCTACAATGGATGAAAT
* * *
7276552 GGTACTTGATTTTGCTATAATTGATGAAAT
1 GGTAATTGATTTTGCTACAATGGATGAAAT
7276582 GG
1 GG
7276584 ACAATTGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.39
Consensus pattern (30 bp):
GGTAATTGATTTTGCTACAATGGATGAAAT
Found at i:7277422 original size:31 final size:31
Alignment explanation
Indices: 7277350--7277422 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
7277340 ATTTACACTC
*
7277350 AAACAATATAAAGCATAATTTCATACTTTGG
1 AAACAGTATAAAGCATAATTTCATACTTTGG
*
7277381 AAACATTATAAAGCAT-ATTATAACATA-TTTGG
1 AAACAGTATAAAGCATAATT-T--CATACTTTGG
7277413 AAA-AGTATAA
1 AAACAGTATAA
7277423 TTTCATTCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
30 3 0.08
31 22 0.59
32 8 0.22
33 4 0.11
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (31 bp):
AAACAGTATAAAGCATAATTTCATACTTTGG
Found at i:7279121 original size:13 final size:14
Alignment explanation
Indices: 7279103--7279137 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
7279093 CATTATTTTT
7279103 AATAAAATAAT-AA
1 AATAAAATAATAAA
*
7279116 AATAAAAAAATAAA
1 AATAAAATAATAAA
7279130 AATAAAAT
1 AATAAAAT
7279138 TTGTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AATAAAATAATAAA
Found at i:7279625 original size:17 final size:19
Alignment explanation
Indices: 7279579--7279626 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
7279569 ATTATTTGTG
* *
7279579 AATATATAATTATATATTT
1 AATAAATAATTATACATTT
*
7279598 AATATATAATTAT-CATTT
1 AATAAATAATTATACATTT
7279616 AA-AAATAATTA
1 AATAAATAATTA
7279627 ATCACGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 8 0.30
18 6 0.22
19 13 0.48
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
AATAAATAATTATACATTT
Found at i:7280556 original size:30 final size:29
Alignment explanation
Indices: 7280494--7280556 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
7280484 ATTATAAATA
* *
7280494 AATTAGATGATATTATTTTATTAATTAAAT
1 AATTAAATGATATTATTTTAATAATT-AAT
7280524 AATTAAATGTATATTATTTATAATAATT-AT
1 AATTAAATG-ATATTATTT-TAATAATTAAT
7280554 AAT
1 AAT
7280557 ATAATTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 13 0.45
31 9 0.31
32 7 0.24
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (29 bp):
AATTAAATGATATTATTTTAATAATTAAT
Found at i:7280561 original size:35 final size:33
Alignment explanation
Indices: 7280476--7280564 Score: 103
Period size: 31 Copynumber: 2.7 Consensus size: 33
7280466 AAAGTGTTTA
*
7280476 TATATATAATTATAAATAAATTAGATGATATTATT
1 TATA-ATAATTATAAAT-AATTAAATGATATTATT
*
7280511 T-TATTAA-T-TAAATAATTAAATGTATATTATT
1 TATAATAATTATAAATAATTAAATG-ATATTATT
7280542 TATAATAATTATAATATAATTAA
1 TATAATAATTATAA-ATAATTAA
7280565 TAAATCATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
30 8 0.17
31 14 0.30
32 6 0.13
33 4 0.09
34 5 0.11
35 9 0.20
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (33 bp):
TATAATAATTATAAATAATTAAATGATATTATT
Found at i:7280563 original size:24 final size:23
Alignment explanation
Indices: 7280512--7280569 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
7280502 GATATTATTT
*
7280512 TATTAATTAAATAATTAAATGTA
1 TATTAATTAAATAATTAAATATA
*
7280535 TATTATTTATAATAATTATAATATA
1 TATTAATTA-AATAATTA-AATATA
7280560 -ATTAA-TAAAT
1 TATTAATTAAAT
7280570 CATAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 3 0.10
23 10 0.33
24 12 0.40
25 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TATTAATTAAATAATTAAATATA
Found at i:7282383 original size:27 final size:26
Alignment explanation
Indices: 7282342--7282395 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
7282332 AGATAAATAT
*
7282342 AATAATTTATCATTG-TAATTTATTTAA
1 AATAATTAATCATTGCT-ATTT-TTTAA
*
7282369 AATAATTAATTATTGCTATTTTTTAA
1 AATAATTAATCATTGCTATTTTTTAA
7282395 A
1 A
7282396 TTAAATGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 17 0.71
28 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (26 bp):
AATAATTAATCATTGCTATTTTTTAA
Found at i:7282452 original size:27 final size:27
Alignment explanation
Indices: 7282404--7282457 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7282394 AATTAAATGC
* * *
7282404 AATAATTATTTATTATAATTTTTTGAA
1 AATAATTAATTATTACAATTTTATGAA
*
7282431 AATAATTAATTATTACATTTTTATGAA
1 AATAATTAATTATTACAATTTTATGAA
7282458 GCTAAACACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (27 bp):
AATAATTAATTATTACAATTTTATGAA
Found at i:7282486 original size:63 final size:61
Alignment explanation
Indices: 7282342--7282490 Score: 167
Period size: 62 Copynumber: 2.4 Consensus size: 61
7282332 AGATAAATAT
* * * **
7282342 AATAATT-TATCATTGTAATTTATTTAAAATAATTAATTATTGCTATTTTTTAAATTAAATGC
1 AATAATTAT-TCATTATAATTT-TTTAAAATAATTAATTATTACTATTTTTTAAACTAAACAC
* *
7282404 AATAATTATTTATTATAATTTTTTGAAAATAATTAATTATTAC-ATTTTTATGAAGCTAAACAC
1 AATAATTATTCATTATAATTTTTT-AAAATAATTAATTATTACTATTTTT-T-AAACTAAACAC
*
7282467 AGTAATTATTCATTATAATTTTTT
1 AATAATTATTCATTATAATTTTTT
7282491 TTAAAACACA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
61 9 0.12
62 35 0.47
63 30 0.41
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (61 bp):
AATAATTATTCATTATAATTTTTTAAAATAATTAATTATTACTATTTTTTAAACTAAACAC
Found at i:7282627 original size:17 final size:18
Alignment explanation
Indices: 7282605--7282638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7282595 TTAAAATGCA
*
7282605 TTATTT-ATCAATTATTT
1 TTATTTGATAAATTATTT
7282622 TTATTTGATAAATTATT
1 TTATTTGATAAATTATT
7282639 GTGTCTGTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TTATTTGATAAATTATTT
Found at i:7286507 original size:8 final size:8
Alignment explanation
Indices: 7286488--7286516 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7286478 TTTCAAACAA
7286488 AAAAATAT
1 AAAAATAT
7286496 -AAAATAT
1 AAAAATAT
7286503 AAAAATAT
1 AAAAATAT
7286511 AAAAAT
1 AAAAAT
7286517 CTTTTGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAAATAT
Found at i:7292639 original size:14 final size:13
Alignment explanation
Indices: 7292617--7292652 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
7292607 TAATATTTAA
7292617 TAAATTTAAAATT
1 TAAATTTAAAATT
7292630 TAAATCTTAAAATT
1 TAAAT-TTAAAATT
7292644 TATAATTTA
1 TA-AATTTA
7292653 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 13 0.62
15 3 0.14
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATTTAAAATT
Found at i:7293456 original size:20 final size:21
Alignment explanation
Indices: 7293420--7293470 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 21
7293410 TCCGAAATTA
7293420 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
7293442 ATAAAATATTATTTTT-AAAT
1 ATAAAATATTATTTTTAAAAT
7293462 AT-AAATATT
1 ATAAAATATT
7293471 TAAAAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.24
20 6 0.21
21 5 0.17
22 11 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:7293467 original size:19 final size:21
Alignment explanation
Indices: 7293419--7293470 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
7293409 ATCCGAAATT
7293419 AATA-AAATATTATTTTTTAA
1 AATATAAATATTATTTTTTAA
7293439 AATATAAAATATTA-TTTTT-A
1 AATAT-AAATATTATTTTTTAA
7293459 AATATAAATATT
1 AATATAAATATT
7293471 TAAAAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.23
20 10 0.33
21 5 0.17
22 8 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATATAAATATTATTTTTTAA
Found at i:7293855 original size:27 final size:26
Alignment explanation
Indices: 7293803--7293864 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
7293793 TGTATTTGGT
* * *
7293803 AAATAATATTATGATAAGATATAATA
1 AAATAATATTACGATAAAATAAAATA
*
7293829 AGATAATATTACGAATAAAATAAAATA
1 AAATAATATTACG-ATAAAATAAAATA
7293856 AAATAATAT
1 AAATAATAT
7293865 AATTATATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 11 0.37
27 19 0.63
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (26 bp):
AAATAATATTACGATAAAATAAAATA
Found at i:7293920 original size:24 final size:24
Alignment explanation
Indices: 7293888--7293937 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7293878 GTTTGATGCA
* *
7293888 TACAAAAATTATGATAGAATAATT
1 TACAAAAATTAAGATAAAATAATT
7293912 TACAAAAATTAAGATAAAATAATT
1 TACAAAAATTAAGATAAAATAATT
7293936 TA
1 TA
7293938 TTTTTTAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (24 bp):
TACAAAAATTAAGATAAAATAATT
Found at i:7294550 original size:17 final size:17
Alignment explanation
Indices: 7294517--7294550 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7294507 ATTTGGATAC
* *
7294517 AAATTTTAGGTTTATTT
1 AAATTTTAGATTGATTT
7294534 AAATTTTAGATTGATTT
1 AAATTTTAGATTGATTT
7294551 TTAGACAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (17 bp):
AAATTTTAGATTGATTT
Found at i:7299554 original size:29 final size:29
Alignment explanation
Indices: 7299490--7299559 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 29
7299480 ATATACTGTG
7299490 AAATTATAATAGAATATTTAATATTATATTT
1 AAATTATAA-A-AATATTTAATATTATATTT
*
7299521 AAATTTTAAAAATATTTAATA-TA-ATTT
1 AAATTATAAAAATATTTAATATTATATTT
7299548 ATGAATTATAAA
1 A--AATTATAAA
7299560 TTTGTTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 5 0.14
28 2 0.06
29 19 0.54
30 1 0.03
31 8 0.23
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATTATAAAAATATTTAATATTATATTT
Found at i:7299948 original size:27 final size:28
Alignment explanation
Indices: 7299889--7299959 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
7299879 ATTAAATGTA
* * *
7299889 AAATTTAAAATTTTTTAATATAATATTT
1 AAATTAAAAATTTATTAATATAATATAT
*
7299917 AAATTATAAATTTATTAAT-TAATATA-
1 AAATTAAAAATTTATTAATATAATATAT
*
7299943 ATAATTAAAAAATTATT
1 A-AATTAAAAATTTATT
7299960 TTTAATCATA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.03
27 19 0.53
28 16 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATTAAAAATTTATTAATATAATATAT
Found at i:7301879 original size:21 final size:21
Alignment explanation
Indices: 7301839--7301889 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
7301829 ATAATTTTTT
* *
7301839 AAATAAAGTTATTTGATAAAC
1 AAATAAAATTATTTGATAAAA
*
7301860 AACTAAAATTATTT-ATTAAAA
1 AAATAAAATTATTTGA-TAAAA
7301881 AAATAAAAT
1 AAATAAAAT
7301890 CCATATTCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
AAATAAAATTATTTGATAAAA
Found at i:7302116 original size:19 final size:18
Alignment explanation
Indices: 7302092--7302132 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
7302082 CAAACTTGTT
7302092 TATATATATTATTAGATAA
1 TATATATATTATTAGAT-A
7302111 TATATATATTATTAGATA
1 TATATATATTATTAGATA
7302129 TATA
1 TATA
7302133 CTATCATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
TATATATATTATTAGATA
Found at i:7308780 original size:4 final size:4
Alignment explanation
Indices: 7308763--7308852 Score: 67
Period size: 4 Copynumber: 23.0 Consensus size: 4
7308753 CATGCTTCTA
* * * * * *
7308763 ATAT AT-T A-AT ATAT ATAT ATAT AAAT ATAA ATAT AAAC ATAA ACAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * * * *
7308809 AAAT AAAT AAAT AAAT AAAT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
7308853 TAGTTTTAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
3 4 0.06
4 68 0.94
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (4 bp):
ATAT
Found at i:7308780 original size:6 final size:6
Alignment explanation
Indices: 7308763--7308852 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
7308753 CATGCTTCTA
* * * * * *
7308763 ATATAT -TA-AT ATATAT ATATAT AAATAT AAATAT AAACAT AAACAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* * * * *
7308809 AAATAA ATAAAT AAATAA ATATAT ATATAT ATATAT ATATAT AT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT AT
7308853 TAGTTTTAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
4 2 0.03
5 4 0.06
6 64 0.91
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (6 bp):
ATATAT
Found at i:7308851 original size:12 final size:12
Alignment explanation
Indices: 7308762--7308852 Score: 76
Period size: 12 Copynumber: 7.6 Consensus size: 12
7308752 CCATGCTTCT
7308762 AATATAT-TAATA
1 AATATATAT-ATA
*
7308774 TATATATATATA
1 AATATATATATA
*
7308786 AATATAAATATA
1 AATATATATATA
* * *
7308798 AACATAAACATA
1 AATATATATATA
* *
7308810 AATAAATAAATA
1 AATATATATATA
*
7308822 AATAAATATATA
1 AATATATATATA
*
7308834 TATATATATATA
1 AATATATATATA
*
7308846 TATATAT
1 AATATAT
7308853 TAGTTTTAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
12 65 0.98
13 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATATA
Found at i:7309271 original size:6 final size:6
Alignment explanation
Indices: 7309260--7309300 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
7309250 CAGTGCCTTG
7309260 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTC
1 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTC
7309301 TGGGTAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.15, C:0.51, G:0.00, T:0.34
Consensus pattern (6 bp):
CCTTCA
Found at i:7310082 original size:22 final size:20
Alignment explanation
Indices: 7310043--7310097 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
7310033 TTAATTTCGT
* *
7310043 TTAT-TAAATTTAACAAATT
1 TTATATAAATTTAAAAAATA
7310062 TTACTATAAATTTTAAAAAATA
1 TTA-TATAAA-TTTAAAAAATA
7310084 TTATATAAAATTTA
1 TTATAT-AAATTTA
7310098 CACTTATGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 3 0.10
20 1 0.03
21 11 0.37
22 15 0.50
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
TTATATAAATTTAAAAAATA
Found at i:7310469 original size:20 final size:20
Alignment explanation
Indices: 7310444--7310481 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7310434 AAGAAATAGA
7310444 AAATATTT-TGATATTTTTTG
1 AAATATTTAT-ATATTTTTTG
7310464 AAATATTTATATATTTTT
1 AAATATTTATATATTTTT
7310482 AGCAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
AAATATTTATATATTTTTTG
Found at i:7321633 original size:31 final size:29
Alignment explanation
Indices: 7321598--7321658 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 29
7321588 GCTGTCCAAA
7321598 ATTATAAAATGATCATTATATCATTTTCAAT
1 ATTATAAAATGATCATTATATC--TTTCAAT
* *
7321629 ATTATAAAATGATTATTTTATCTTTCAAT
1 ATTATAAAATGATCATTATATCTTTCAAT
7321658 A
1 A
7321659 AAAAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 8 0.29
31 20 0.71
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (29 bp):
ATTATAAAATGATCATTATATCTTTCAAT
Found at i:7321913 original size:144 final size:133
Alignment explanation
Indices: 7321598--7321949 Score: 343
Period size: 144 Copynumber: 2.6 Consensus size: 133
7321588 GCTGTCCAAA
*
7321598 ATTATAAAATGATCATTATATCATTTTCAATATTATAAAATGATTATTTTA-TCTTTCAATAAAA
1 ATTATAAAATGATCATTTTATCATTTTCAATATTATAAAATGATTATTTTACTCTTT--ATAAAA
* * * * *
7321662 AATAAAATAATAAAAATTAAAAATATATTAAAAGAGTTTTCAAAGGATTATATTTTGATACTTAT
64 AATAAAATAATAAAAATTAAAAATATATTAAAAGAATTTCCAAAGGATTATAGTTTGACACCTAT
*
7321727 TCAAT
129 TCAAC
* * * * * * *
7321732 ATTGTAAAATGATCATTTTACCCTTTTTAATAATATAAAATAATTATTTTACCCTTTATAAAACA
1 ATTATAAAATGATCATTTTATCATTTTCAATATTATAAAATGATTATTTTACTCTTTATAAAA-A
* *
7321797 CCTAAAATGTTAATAACAAAAATTTAAAAATA-AGTTAAAAAGAATTTCCAAAGAGGTTATAGTT
65 -ATAAAA---TAAT---AAAAA-TTAAAAATATA-TT-AAAAGAATTTCCAAAG-GATTATAGTT
* *
7321861 TGACACCTGTTTAAC
119 TGACACCTATTCAAC
* * *
7321876 ATTATAAAATGATTATTTTATCATTTTCAACT-TTATAAAATGTTTATTTTACTCTTTA-ATGAA
1 ATTATAAAATGATCATTTTATCATTTTCAA-TATTATAAAATGATTATTTTACTCTTTATA-AAA
7321939 AATAAAATAAT
64 AATAAAATAAT
7321950 TTAAAATGTA
Statistics
Matches: 174, Mismatches: 29, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
133 6 0.03
134 45 0.26
135 9 0.05
138 4 0.02
139 4 0.02
141 6 0.03
142 16 0.09
143 16 0.09
144 67 0.39
145 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (133 bp):
ATTATAAAATGATCATTTTATCATTTTCAATATTATAAAATGATTATTTTACTCTTTATAAAAAA
TAAAATAATAAAAATTAAAAATATATTAAAAGAATTTCCAAAGGATTATAGTTTGACACCTATTC
AAC
Found at i:7321976 original size:15 final size:14
Alignment explanation
Indices: 7321952--7321999 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
7321942 AAAATAATTT
7321952 AAAATGTAAATAATAA
1 AAAAT-TAAA-AATAA
*
7321968 AAAATTAAAAATACT
1 AAAATTAAAAATA-A
7321983 AAAATTAAAAA-AA
1 AAAATTAAAAATAA
7321996 AAAA
1 AAAA
7322000 AAAATCTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 4 0.14
14 5 0.17
15 15 0.52
16 5 0.17
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAATTAAAAATAA
Found at i:7334310 original size:20 final size:19
Alignment explanation
Indices: 7334285--7334324 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
7334275 CATATGCAAG
7334285 TATA-TTTATGATATAAATTA
1 TATATTTTATGA-AT-AATTA
7334305 TATATTTTATGAATAATTA
1 TATATTTTATGAATAATTA
7334324 T
1 T
7334325 TTTTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TATATTTTATGAATAATTA
Found at i:7339614 original size:22 final size:22
Alignment explanation
Indices: 7339570--7339615 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7339560 AGCTGCTCAA
* *
7339570 GTGTGACTGTAAGATATGTAGT
1 GTGTGACTGTAAGATACGCAGT
*
7339592 GTGTGATTGTAAGATACGCAGT
1 GTGTGACTGTAAGATACGCAGT
7339614 GT
1 GT
7339616 ACTTTGTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.07, G:0.33, T:0.35
Consensus pattern (22 bp):
GTGTGACTGTAAGATACGCAGT
Found at i:7341063 original size:27 final size:28
Alignment explanation
Indices: 7341005--7341063 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
7340995 ATAATTATTA
*
7341005 AAATTTTAAATAATATCTTACGTGTTTT
1 AAATTTTAAATAATATCTTACGTATTTT
* * *
7341033 -AATTTTATATTATAT-TTATGTATTTT
1 AAATTTTAAATAATATCTTACGTATTTT
7341059 AAATT
1 AAATT
7341064 GTGAAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (28 bp):
AAATTTTAAATAATATCTTACGTATTTT
Found at i:7342188 original size:9 final size:9
Alignment explanation
Indices: 7342155--7342195 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
7342145 CCCTTTCTTT
*
7342155 TTTCTTTCA
1 TTTCTCTCA
7342164 TTTCTTCTCA
1 TTTC-TCTCA
7342174 TTTCTCTCA
1 TTTCTCTCA
*
7342183 TTTCTCTCT
1 TTTCTCTCA
7342192 TTTC
1 TTTC
7342196 GACTCTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.63
Consensus pattern (9 bp):
TTTCTCTCA
Found at i:7343695 original size:16 final size:16
Alignment explanation
Indices: 7343676--7343706 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7343666 AGCTCGATTT
*
7343676 TTTAAAAATTAAAATA
1 TTTAAAAAATAAAATA
7343692 TTTAAAAAATAAAAT
1 TTTAAAAAATAAAAT
7343707 TTAATATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TTTAAAAAATAAAATA
Found at i:7345115 original size:18 final size:19
Alignment explanation
Indices: 7345075--7345118 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
7345065 TTTTATTATG
*
7345075 ATTATTTTAATTTTTTGTT
1 ATTATTTTAATCTTTTGTT
*
7345094 ATTATTTTTATCTTTT-TT
1 ATTATTTTAATCTTTTGTT
7345112 ATTATTT
1 ATTATTT
7345119 AAATGAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (19 bp):
ATTATTTTAATCTTTTGTT
Found at i:7345606 original size:287 final size:287
Alignment explanation
Indices: 7345308--7345884 Score: 1127
Period size: 287 Copynumber: 2.0 Consensus size: 287
7345298 TAACTATAAT
7345308 TTTAGGATTATCCTAACTTTATGGTGAAATCTGTAAAATATTTTTACTTGTAATAATTAAAGAAA
1 TTTAGGATTATCCTAACTTTATGGTGAAATCTGTAAAATATTTTTACTTGTAATAATTAAAGAAA
7345373 ATTAAACTTTTTCAATTTTCTCTAAAAATTACTTTAAAAAAAACTTAAAAAATTCATTAGTTTTC
66 ATTAAACTTTTTCAATTTTCTCTAAAAATTACTTTAAAAAAAACTTAAAAAATTCATTAGTTTTC
7345438 AAATTTATTTTTTTATCATTTTATTATTTTTTAGAAAAAATTATTTTTTAAATTATCCAAATACT
131 AAATTTATTTTTTTATCATTTTATTATTTTTTAGAAAAAATTATTTTTTAAATTATCCAAATACT
* *
7345503 TTCGTGAAATTTAAATAATATTTTGCTTGCAATAAAATTTTAATTTTTTTTAATAGTTATTTTAA
196 TTCGTGAAATTTAAATAATACTTTGCTTGCAATAAAATTTTAATTTTTTTAAATAGTTATTTTAA
7345568 AGGATTTTTTAAGATTTATGTATATTA
261 AGGATTTTTTAAGATTTATGTATATTA
7345595 TTTAGGATTATCCTAACTTTATGGTGAAATCTGTAAAATATTTTTACTTGTAATAATTAAAGAAA
1 TTTAGGATTATCCTAACTTTATGGTGAAATCTGTAAAATATTTTTACTTGTAATAATTAAAGAAA
7345660 ATTAAACTTTTTCAATTTTCTCTAAAAATTACTTTAAAAAAAACTTAAAAAATTCATTAGTTTTC
66 ATTAAACTTTTTCAATTTTCTCTAAAAATTACTTTAAAAAAAACTTAAAAAATTCATTAGTTTTC
*
7345725 ATATTTATTTTTTTATCATTTTATTATTTTTTAGAAAAAATTATTTTTTAAATTATCCAAATACT
131 AAATTTATTTTTTTATCATTTTATTATTTTTTAGAAAAAATTATTTTTTAAATTATCCAAATACT
7345790 TTCGTGAAATTTAAATAATACTTTGCTTGCAATAAAATTTTAATTTTTTTAAATAGTTATTTTAA
196 TTCGTGAAATTTAAATAATACTTTGCTTGCAATAAAATTTTAATTTTTTTAAATAGTTATTTTAA
7345855 AGGATTTTTTAAGATTTATGTATATTA
261 AGGATTTTTTAAGATTTATGTATATTA
7345882 TTT
1 TTT
7345885 TTTATTTTTT
Statistics
Matches: 287, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
287 287 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (287 bp):
TTTAGGATTATCCTAACTTTATGGTGAAATCTGTAAAATATTTTTACTTGTAATAATTAAAGAAA
ATTAAACTTTTTCAATTTTCTCTAAAAATTACTTTAAAAAAAACTTAAAAAATTCATTAGTTTTC
AAATTTATTTTTTTATCATTTTATTATTTTTTAGAAAAAATTATTTTTTAAATTATCCAAATACT
TTCGTGAAATTTAAATAATACTTTGCTTGCAATAAAATTTTAATTTTTTTAAATAGTTATTTTAA
AGGATTTTTTAAGATTTATGTATATTA
Found at i:7345749 original size:16 final size:18
Alignment explanation
Indices: 7345723--7345755 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7345713 TCATTAGTTT
7345723 TCATATTTATT-TTTTTA
1 TCATATTTATTATTTTTA
7345740 TCAT-TTTATTATTTTT
1 TCATATTTATTATTTTT
7345756 TAGAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (18 bp):
TCATATTTATTATTTTTA
Found at i:7346419 original size:40 final size:39
Alignment explanation
Indices: 7346360--7346570 Score: 192
Period size: 40 Copynumber: 5.3 Consensus size: 39
7346350 TAACTTTTGA
* * *
7346360 AAATTTAAAAAGCTTTTCTGACTAGATGCTATGAAACTTT
1 AAATTTAAAAGGCTCTTCTGACTAGA-GCAATGAAACTTT
* **
7346400 AAATTGAAAAGGCTCTTCTGACCATAG-GCAACAAAACTTT
1 AAATTTAAAAGGCTCTTCTGA-C-TAGAGCAATGAAACTTT
* * * * *
7346440 AAATTTAATATGTTTTTCTAACTAGAGACAATGAAACTTT
1 AAATTTAAAAGGCTCTTCTGACTAGAG-CAATGAAACTTT
* * *
7346480 AAATTCAAAAGGCTCATCTAACTAGAGTCAATGAAACTTT
1 AAATTTAAAAGGCTCTTCTGACTAGAG-CAATGAAACTTT
* * *
7346520 AAATTTAAAAGGCT-TCTCTGACCAGAGATAATGATACTTT
1 AAATTTAAAAGGCTCT-TCTGACTAGAG-CAATGAAACTTT
7346560 AAATTTAAAAG
1 AAATTTAAAAG
7346571 TCTGAGAAGA
Statistics
Matches: 138, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
38 3 0.02
39 2 0.01
40 129 0.93
41 1 0.01
42 3 0.02
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (39 bp):
AAATTTAAAAGGCTCTTCTGACTAGAGCAATGAAACTTT
Found at i:7346733 original size:40 final size:40
Alignment explanation
Indices: 7346672--7346816 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 40
7346662 AGCTCCTCTA
*
7346672 ACCAAAGGCTATGAAACTTTAAA--T----GACTCATCTG
1 ACCAAAGGCTATGAAACTTTAAATTTAAAAGACTCATTTG
* * * *
7346706 ACCAGAA-GCTATGACACTTTAAATTTAAAAGGCTTATTTA
1 ACCA-AAGGCTATGAAACTTTAAATTTAAAAGACTCATTTG
7346746 ACCAAAGGCTATGAAACTTTAAATTTAAAAGACTCATTTG
1 ACCAAAGGCTATGAAACTTTAAATTTAAAAGACTCATTTG
*
7346786 ACCAAAGGCAATGAAACTTTAAATTTAAAAG
1 ACCAAAGGCTATGAAACTTTAAATTTAAAAG
7346817 TCTGAGAGGC
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
34 19 0.20
35 2 0.02
36 1 0.01
39 2 0.02
40 69 0.74
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (40 bp):
ACCAAAGGCTATGAAACTTTAAATTTAAAAGACTCATTTG
Found at i:7346805 original size:80 final size:74
Alignment explanation
Indices: 7346670--7346816 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 74
7346660 AAAGCTCCTC
* *
7346670 TAACCAAAGGCTATGAAACTTTAAATGACTCATCTGACCAGAAGCTATGACACTTTAAATTTAAA
1 TAACCAAAGGCTATGAAACTTTAAATGACTCATCTGACCAGAAGCAATGAAACTTTAAATTTAAA
7346735 AGGCTTATT
66 AGGCTTATT
*
7346744 TAACCAAAGGCTATGAAACTTTAAATTTAAAAGACTCATTTGACCA-AAGGCAATGAAACTTTAA
1 TAACCAAAGGCTATGAAACTTTAAA--T----GACTCATCTGACCAGAA-GCAATGAAACTTTAA
7346808 ATTTAAAAG
59 ATTTAAAAG
7346817 TCTGAGAGGC
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
74 25 0.40
76 1 0.02
79 2 0.03
80 35 0.56
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.29
Consensus pattern (74 bp):
TAACCAAAGGCTATGAAACTTTAAATGACTCATCTGACCAGAAGCAATGAAACTTTAAATTTAAA
AGGCTTATT
Found at i:7358591 original size:52 final size:53
Alignment explanation
Indices: 7358493--7358601 Score: 136
Period size: 52 Copynumber: 2.1 Consensus size: 53
7358483 TATTTTATTT
* *
7358493 TTTTATTAAAAATGATTTTAGAATGATCTTGACTCATTTGTAAAATT-TCAAAA
1 TTTTATTAAAAATAATTTTAGAATGATCTAGACTCATTTGTAAAATTCT-AAAA
*
7358546 TTTTATT-AAACTAATTTTAGAATGATCTAGACTC-TTTG-ACCAAATTCTAAAA
1 TTTTATTAAAAATAATTTTAGAATGATCTAGACTCATTTGTA--AAATTCTAAAA
7358598 TTTT
1 TTTT
7358602 TAAATAAATT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
50 1 0.02
51 4 0.08
52 37 0.74
53 8 0.16
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (53 bp):
TTTTATTAAAAATAATTTTAGAATGATCTAGACTCATTTGTAAAATTCTAAAA
Found at i:7360313 original size:13 final size:13
Alignment explanation
Indices: 7360289--7360323 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7360279 TTTTTGACTT
7360289 TTTTATTTTTATTA
1 TTTTA-TTTTATTA
7360303 TTTTATTTTATTA
1 TTTTATTTTATTA
*
7360316 TTATATTT
1 TTTTATTT
7360324 ATTTTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:7363908 original size:15 final size:15
Alignment explanation
Indices: 7363890--7363919 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7363880 CCATCATATT
*
7363890 TTTTAAATTTTGGTA
1 TTTTAAACTTTGGTA
7363905 TTTTAAACTTTGGTA
1 TTTTAAACTTTGGTA
7363920 GGATTACCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTTAAACTTTGGTA
Found at i:7368320 original size:12 final size:12
Alignment explanation
Indices: 7368303--7368327 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7368293 TAAAAAAATA
7368303 TTTTTTTTGTTT
1 TTTTTTTTGTTT
7368315 TTTTTTTTGTTT
1 TTTTTTTTGTTT
7368327 T
1 T
7368328 GGATTATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:7368800 original size:13 final size:14
Alignment explanation
Indices: 7368777--7368806 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7368767 AAATCTACAT
7368777 TTTATTTTAACTTA
1 TTTATTTTAACTTA
7368791 TTTA-TTTAACTTA
1 TTTATTTTAACTTA
7368804 TTT
1 TTT
7368807 CCAAAAGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTTAACTTA
Found at i:7368873 original size:3 final size:3
Alignment explanation
Indices: 7368818--7368854 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
7368808 CAAAAGAACA
* *
7368818 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7368855 TCATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:7368928 original size:25 final size:27
Alignment explanation
Indices: 7368872--7368928 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
7368862 TATATATAAT
*
7368872 AAAAATCAACACAAAATAAATAAAAAT
1 AAAAATCAACACAAAATAAATAAAAAC
* *
7368899 GAAAATCAA-A-ACAATAAATAAAAAC
1 AAAAATCAACACAAAATAAATAAAAAC
7368924 AAAAA
1 AAAAA
7368929 GAAAAGCGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 17 0.65
26 1 0.04
27 8 0.31
ACGTcount: A:0.75, C:0.11, G:0.02, T:0.12
Consensus pattern (27 bp):
AAAAATCAACACAAAATAAATAAAAAC
Found at i:7373809 original size:61 final size:60
Alignment explanation
Indices: 7373741--7373861 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
7373731 AATTAATATG
* *
7373741 ATAATTTATCATATTTCATTTGTTTATTAATACTATTTATTCAAAAAAATATTTTATTTTT
1 ATAATTTATCATATTTCATTTGTTTATT-ATAATATTTATTCAAAAAAATATTTTACTTTT
*
7373802 ATAATTTATCATATTTCATTTGTTTATTATAATATTTATTCAAAAAACTATTTTACTTTT
1 ATAATTTATCATATTTCATTTGTTTATTATAATATTTATTCAAAAAAATATTTTACTTTT
7373862 GTTAATACTA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
60 29 0.51
61 28 0.49
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (60 bp):
ATAATTTATCATATTTCATTTGTTTATTATAATATTTATTCAAAAAAATATTTTACTTTT
Found at i:7373839 original size:30 final size:30
Alignment explanation
Indices: 7373744--7373840 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
7373734 TAATATGATA
*
7373744 ATTTATCATATTTCATTTGTTTATTAATACT
1 ATTTATCATATTTCATTTGTTTATT-ATAAT
**** * * *
7373775 ATTTATTCA-AAAAAATAT-TTTATTTTTAT
1 ATTTA-TCATATTTCATTTGTTTATTATAAT
7373804 AATTTATCATATTTCATTTGTTTATTATAAT
1 -ATTTATCATATTTCATTTGTTTATTATAAT
7373835 ATTTAT
1 ATTTAT
7373841 TCAAAAAACT
Statistics
Matches: 47, Mismatches: 15, Indels: 9
0.66 0.21 0.13
Matches are distributed among these distances:
29 5 0.11
30 21 0.45
31 18 0.38
32 3 0.06
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (30 bp):
ATTTATCATATTTCATTTGTTTATTATAAT
Found at i:7374533 original size:22 final size:23
Alignment explanation
Indices: 7374508--7374554 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
7374498 AATCTGAAAA
* *
7374508 TAAAAATTGAAATTA-TAGATAT
1 TAAAAATTAAAATTATTAAATAT
*
7374530 TAAAATTTAAAATTATTAAATAT
1 TAAAAATTAAAATTATTAAATAT
7374553 TA
1 TA
7374555 TATTTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
TAAAAATTAAAATTATTAAATAT
Found at i:7374561 original size:23 final size:23
Alignment explanation
Indices: 7374508--7374570 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
7374498 AATCTGAAAA
* * *
7374508 TAAAAATTGAAATTA-TAGATAT
1 TAAAATTTAAAATTATTAAATAT
7374530 TAAAATTTAAAATTATTAAATAT
1 TAAAATTTAAAATTATTAAATAT
* * *
7374553 TATATTTTAAAAATATTA
1 TAAAATTTAAAATTATTA
7374571 CATAAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 13 0.38
23 21 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (23 bp):
TAAAATTTAAAATTATTAAATAT
Found at i:7375562 original size:25 final size:25
Alignment explanation
Indices: 7375514--7375562 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7375504 CTTTTTTCTG
* *
7375514 ATTTAAGTAAATTTATTTACATTAA
1 ATTTAAGTAAATTTATATAAATTAA
7375539 ATTTAA-TAAATTTATAATAAATTA
1 ATTTAAGTAAATTTAT-ATAAATTA
7375563 CTTTTCAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
ATTTAAGTAAATTTATATAAATTAA
Found at i:7375625 original size:4 final size:4
Alignment explanation
Indices: 7375618--7375646 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7375608 CATATATATA
7375618 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
7375647 GTAAAGCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7377398 original size:22 final size:21
Alignment explanation
Indices: 7377364--7377407 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
7377354 TTATTTAATC
7377364 ATTTTAACC-AAAAACTTTACA
1 ATTTTAACCAAAAAAC-TTACA
*
7377385 ATTTTAACTTAAAAAACTTACA
1 ATTTTAAC-CAAAAAACTTACA
7377407 A
1 A
7377408 AGCAAAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 6 0.30
23 6 0.30
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTTTAACCAAAAAACTTACA
Found at i:7378717 original size:11 final size:12
Alignment explanation
Indices: 7378701--7378730 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7378691 ATCATTGCTA
7378701 GTAACTT-GGAG
1 GTAACTTGGGAG
7378712 GTAACTTGGGAG
1 GTAACTTGGGAG
7378724 GTAACTT
1 GTAACTT
7378731 ATATCATGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.10, G:0.33, T:0.30
Consensus pattern (12 bp):
GTAACTTGGGAG
Found at i:7380156 original size:6 final size:6
Alignment explanation
Indices: 7380141--7380201 Score: 72
Period size: 6 Copynumber: 10.0 Consensus size: 6
7380131 GGGTAAGCCC
7380141 ATTTTT -TTTTT ATTTTT ATTTTCGT ATTTTT ATTTTT A-TTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTT--T ATTTTT ATTTTT ATTTTT ATTTTT
*
7380189 ATTATAT ATTTTT
1 ATT-TTT ATTTTT
7380202 TTCTTTTTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
5 10 0.21
6 27 0.56
7 5 0.10
8 6 0.12
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:7380168 original size:14 final size:12
Alignment explanation
Indices: 7380141--7380201 Score: 72
Period size: 11 Copynumber: 5.0 Consensus size: 12
7380131 GGGTAAGCCC
7380141 ATTTTT-TTTTT
1 ATTTTTATTTTT
7380152 ATTTTTATTTTCGT
1 ATTTTTATTTT--T
7380166 ATTTTTATTTTT
1 ATTTTTATTTTT
7380178 A-TTTTATTTTT
1 ATTTTTATTTTT
*
7380189 ATTATATATTTTT
1 ATT-TTTATTTTT
7380202 TTCTTTTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
11 17 0.39
12 7 0.16
13 8 0.18
14 12 0.27
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:7380193 original size:20 final size:20
Alignment explanation
Indices: 7380145--7380210 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
7380135 AAGCCCATTT
*
7380145 TTTTTTTATTTTTATTTTCG
1 TTTTTTTATTTTTATTTTCA
*
7380165 TATTTTTATTTTTATTTT-A
1 TTTTTTTATTTTTATTTTCA
7380184 TTTTTATTATATATTT-TTTTC-
1 TTTTT-TTAT-T-TTTATTTTCA
7380205 TTTTTT
1 TTTTTT
7380211 CTTTTCTTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 4 0.10
20 22 0.56
21 10 0.26
22 3 0.08
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTTTATTTTTATTTTCA
Found at i:7380202 original size:31 final size:31
Alignment explanation
Indices: 7380141--7380201 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
7380131 GGGTAAGCCC
* * *
7380141 ATTTTTTTTTTATTTTTATTTTCGTATTTTT
1 ATTTTTATTTTATTTTTATTATCATATTTTT
7380172 ATTTTTATTTTATTTTTATTAT-ATATTTTT
1 ATTTTTATTTTATTTTTATTATCATATTTTT
7380202 TTCTTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (31 bp):
ATTTTTATTTTATTTTTATTATCATATTTTT
Found at i:7380220 original size:16 final size:15
Alignment explanation
Indices: 7380197--7380226 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7380187 TTATTATATA
7380197 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
7380212 TTTTCTTTCTTTTTT
1 TTTT-TTTCTTTTTT
7380227 TCCTTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:7380262 original size:20 final size:21
Alignment explanation
Indices: 7380233--7380271 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7380223 TTTTTCCTTA
*
7380233 TTTATTTATTTATT-TTATCT
1 TTTATATATTTATTATTATCT
7380253 TTTATATATTTATTATTAT
1 TTTATATATTTATTATTAT
7380272 TTATCTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATATATTTATTATTATCT
Found at i:7380895 original size:16 final size:19
Alignment explanation
Indices: 7380872--7380913 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 19
7380862 CAGTTTCTAG
7380872 AGAGAAGGGAA-AGA-AGA
1 AGAGAAGGGAAGAGAGAGA
7380889 A-AGAAGGGAAGAGAGAGA
1 AGAGAAGGGAAGAGAGAGA
7380907 AGAGAAG
1 AGAGAAG
7380914 AAGGGTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 9 0.41
17 4 0.18
18 4 0.18
19 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (19 bp):
AGAGAAGGGAAGAGAGAGA
Found at i:7381269 original size:25 final size:24
Alignment explanation
Indices: 7381237--7381303 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
7381227 TGTTTAATAT
7381237 TTTTATTTTTTTATCTTTTATTTA
1 TTTTATTTTTTTATCTTTTATTTA
*
7381261 TTTTCA--TTTTTA-C-TTTGTTTA
1 TTTT-ATTTTTTTATCTTTTATTTA
*
7381282 TTTTATTTTATTAT-TTTTATTT
1 TTTTATTTTTTTATCTTTTATTT
7381304 TTCTAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
21 11 0.31
22 6 0.17
23 12 0.34
24 4 0.11
25 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (24 bp):
TTTTATTTTTTTATCTTTTATTTA
Found at i:7381299 original size:14 final size:14
Alignment explanation
Indices: 7381229--7381304 Score: 66
Period size: 14 Copynumber: 5.2 Consensus size: 14
7381219 ATTAGAATTG
*
7381229 TTTAATATTTTTAT
1 TTTATTATTTTTAT
*
7381243 TTTTTTATCTTTTAT
1 TTTATTAT-TTTTAT
*
7381258 TTATTTTCATTTTTACT
1 TT-TATT-ATTTTTA-T
7381275 TTGT-TTA-TTTTAT
1 TT-TATTATTTTTAT
7381288 TTTATTATTTTTAT
1 TTTATTATTTTTAT
7381302 TTT
1 TTT
7381305 TCTAAAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
12 1 0.02
13 6 0.11
14 20 0.38
15 9 0.17
16 11 0.21
17 6 0.11
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (14 bp):
TTTATTATTTTTAT
Found at i:7381392 original size:59 final size:59
Alignment explanation
Indices: 7381315--7381710 Score: 364
Period size: 59 Copynumber: 6.7 Consensus size: 59
7381305 TCTAAAAAAA
* * * *
7381315 TTCAAAAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT-TAAAGATAAATT
1 TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAA-ATAAATT
* *
7381374 TTCAAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
1 TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAAT-AAA-TT
* * * * * * *
7381435 TTCAAAAAATATTG-TTAGA-AAAAAGATGAAAATATCAATTTTCCT-TAAGAATAAATT
1 TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAA-AATAAATT
** *** * * *
7381492 TTTTAAAAAAGGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGGT
1 TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAA-TT
* * * *
7381552 TTCCAAAAAAATATTTTTG-GAAAAAAGTTGAAAGTATCAATTTTCCT-TAAGAATAAATT
1 TTCAAAAAAAATAGTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTCGAA-AATAAATT
* * * *
7381611 TTCAAAAAGAA-GGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
1 TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAATT
*
7381669 TTC-AAAAGAATA-TTTCTG-GGAAAAAGTTGAAA-TATCAATTTT
1 TTCAAAAAAAATAGTTT-TGAGG-AAAAGTTGAAAGTATCAATTTT
7381711 TCCCTGTACA
Statistics
Matches: 273, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
57 32 0.12
58 61 0.22
59 112 0.41
60 55 0.20
61 13 0.05
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.34
Consensus pattern (59 bp):
TTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAATT
Found at i:7381471 original size:118 final size:116
Alignment explanation
Indices: 7381319--7381710 Score: 522
Period size: 118 Copynumber: 3.3 Consensus size: 116
7381309 AAAAAATTCA
* * * *
7381319 AAAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA-AGATAAATTTTCAAAAAA
1 AAAAAA-TATTTTGGA-AAAAAGTTGAAAATATCAATTTTCCTTAAGA-ATAAATTTTC-AAAAA
*
7381383 AAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTTC
62 AAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTTC
* * * *
7381438 AAAAAATATTGTTAGAAAAAAGATGAAAATATCAATTTTCCTTAAGAATAAATTTTTTAAAAAAG
1 AAAAAATATT-TTGGAAAAAAGTTGAAAATATCAATTTTCCTTAAGAATAAA-TTTTCAAAAAAA
* * * *
7381503 GGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGGTTTCC
64 AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTTC
* *
7381556 AAAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTCAAAAAGA
1 -AAAAAATA-TTTTGGAAAAAAGTTGAAAATATCAATTTTCCTTAAGAATAAATTTTCAAAAAAA
7381621 AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATT-AAAG-TTTC
64 AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTTC
*
7381672 AAAAGAATATTTCTGGGAAAAAGTTG-AAATATCAATTTT
1 AAAA-AATATTT-TGGAAAAAAGTTGAAAATATCAATTTT
7381711 TCCCTGTACA
Statistics
Matches: 242, Mismatches: 24, Indels: 18
0.85 0.08 0.06
Matches are distributed among these distances:
115 19 0.08
116 19 0.08
117 3 0.01
118 138 0.57
119 61 0.25
120 2 0.01
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (116 bp):
AAAAAATATTTTGGAAAAAAGTTGAAAATATCAATTTTCCTTAAGAATAAATTTTCAAAAAAAAG
GTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTTC
Found at i:7392118 original size:9 final size:9
Alignment explanation
Indices: 7392104--7392143 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
7392094 ATGCTTAAAG
7392104 AAAAAATGA
1 AAAAAATGA
7392113 AAAAAATGA
1 AAAAAATGA
7392122 AAAAAATG-
1 AAAAAATGA
7392130 AAAAAA-GA
1 AAAAAATGA
7392138 AAAAAA
1 AAAAAA
7392144 AGTGAATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 1 0.03
8 12 0.40
9 17 0.57
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (9 bp):
AAAAAATGA
Found at i:7392143 original size:8 final size:8
Alignment explanation
Indices: 7392100--7392143 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
7392090 TATTATGCTT
7392100 AAAGAAAA
1 AAAGAAAA
*
7392108 AATGAAAA
1 AAAGAAAA
7392116 AAATGAAAA
1 AAA-GAAAA
7392125 AAATG-AAA
1 AAA-GAAAA
7392133 AAAGAAAA
1 AAAGAAAA
7392141 AAA
1 AAA
7392144 AGTGAATGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 1 0.03
8 21 0.66
9 10 0.31
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (8 bp):
AAAGAAAA
Found at i:7392144 original size:17 final size:17
Alignment explanation
Indices: 7392100--7392143 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
7392090 TATTATGCTT
7392100 AAAG-AAAAAATGAAAA
1 AAAGAAAAAAATGAAAA
7392116 AAATGAAAAAAATG-AAA
1 AAA-GAAAAAAATGAAAA
7392133 AAAGAAAAAAA
1 AAAGAAAAAAA
7392144 AGTGAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 11 0.42
17 7 0.27
18 8 0.31
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAAATGAAAA
Found at i:7392144 original size:18 final size:18
Alignment explanation
Indices: 7392104--7392149 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7392094 ATGCTTAAAG
*
7392104 AAAAAATGAAAAAAATGA
1 AAAAAATGAAAAAAATAA
7392122 AAAAAATGAAAAAAGA-AA
1 AAAAAATGAAAAAA-ATAA
*
7392140 AAAAAGTGAA
1 AAAAAATGAA
7392150 TGAAAAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (18 bp):
AAAAAATGAAAAAAATAA
Found at i:7393173 original size:41 final size:41
Alignment explanation
Indices: 7393128--7393348 Score: 265
Period size: 41 Copynumber: 5.4 Consensus size: 41
7393118 ATGATTGTCA
*
7393128 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
*
7393169 AGGAGCAATTTATTTTTCAAAGTTTCGT--TGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGGTGCCTCTATTTAG
* * *
7393210 AGTAGCAATTTACCTTTCAAAGTCGTGGTGCCTCTATTTAA
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
*
7393251 AGGAGCAATTTA-TTCTCCAAAGTTTCGT--TGCCTCTATTTAG
1 AGGAGCAATTTACTT-TTCAAAG--TCGTGGTGCCTCTATTTAG
**
7393292 AGGAGCAATTTACTTTTCAAAGTTATGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
* *
7393333 ATGAGC-ATTTATTTTT
1 AGGAGCAATTTACTTTT
7393349 GAAGTCATGG
Statistics
Matches: 155, Mismatches: 15, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
39 6 0.04
40 10 0.06
41 129 0.83
42 2 0.01
43 8 0.05
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
Found at i:7393237 original size:82 final size:82
Alignment explanation
Indices: 7393128--7393348 Score: 354
Period size: 82 Copynumber: 2.7 Consensus size: 82
7393118 ATGATTGTCA
*
7393128 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAGTT
7393193 TCGTTGCCTCTATTTAG
66 TCGTTGCCTCTATTTAG
* * * * *
7393210 AGTAGCAATTTACCTTTCAAAGTCGTGGTGCCTCTATTTAAAGGAGCAATTTATTCTCCAAAGTT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAGTT
7393275 TCGTTGCCTCTATTTAG
66 TCGTTGCCTCTATTTAG
** *
7393292 AGGAGCAATTTACTTTTCAAAGTTATGGTGCCTCTATTTAGATGAGC-ATTTATTTTT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTT
7393349 GAAGTCATGG
Statistics
Matches: 125, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 8 0.06
82 117 0.94
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (82 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAGTT
TCGTTGCCTCTATTTAG
Found at i:7393382 original size:40 final size:41
Alignment explanation
Indices: 7393338--7393416 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
7393328 TTTAGATGAG
* * **
7393338 CATTTA-TTTTTGAAGTCATGGTGTTTCTGCTTAGAGAATT
1 CATTTATTTTTTCAAGTCATGGAGCATCTGCTTAGAGAATT
*
7393378 CATTTATTTTTTCAAGTCATTGAGCATCTGCTTAGAGAA
1 CATTTATTTTTTCAAGTCATGGAGCATCTGCTTAGAGAA
7393417 GTTTTGATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
40 6 0.18
41 27 0.82
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (41 bp):
CATTTATTTTTTCAAGTCATGGAGCATCTGCTTAGAGAATT
Found at i:7393575 original size:46 final size:44
Alignment explanation
Indices: 7393445--7393593 Score: 180
Period size: 41 Copynumber: 3.4 Consensus size: 44
7393435 ACAAAAAAAT
* *
7393445 GCCTCTGATTAGAGGAGCTTTGTTT-TTTTTTCCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCATTATTTATTTTTT-CAAAGTCGTTGA
*
7393489 GCCTCTGATTAGAGGAGCA--ATTTA-TTTTCCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCATTATTTATTTTTTCAAAGTCGTTGA
* *
7393530 GCCTCTGATTAAAGGAGCATTATTTATTCATTTTCAAAGTTGTTGA
1 GCCTCTGATTAGAGGAGCATTATTTATT--TTTTCAAAGTCGTTGA
* *
7393576 GCCCCTGTTTAGAGGAGC
1 GCCTCTGATTAGAGGAGC
7393594 CTCGATCAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
41 30 0.33
42 7 0.08
43 5 0.06
44 19 0.21
46 29 0.32
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (44 bp):
GCCTCTGATTAGAGGAGCATTATTTATTTTTTCAAAGTCGTTGA
Found at i:7393982 original size:10 final size:10
Alignment explanation
Indices: 7393967--7393999 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7393957 TATATTAATA
7393967 TTTTTTATTT
1 TTTTTTATTT
7393977 TTTTTTA-TT
1 TTTTTTATTT
*
7393986 TTTTTGATTT
1 TTTTTTATTT
7393996 TTTT
1 TTTT
7394000 CGGTTCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:7394470 original size:14 final size:16
Alignment explanation
Indices: 7394435--7394473 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
7394425 TTCGATTTTT
*
7394435 AGAAAGAGGGGAGAGA
1 AGAAAGAAGGGAGAGA
7394451 AGAAAGAAGGGA-AG-
1 AGAAAGAAGGGAGAGA
7394465 AGAAAGAAG
1 AGAAAGAAG
7394474 AAAAGAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 2 0.09
16 11 0.50
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (16 bp):
AGAAAGAAGGGAGAGA
Found at i:7394475 original size:17 final size:17
Alignment explanation
Indices: 7394435--7394468 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7394425 TTCGATTTTT
*
7394435 AGAAAG-AGGGGAGAGA
1 AGAAAGAAGGGAAGAGA
7394451 AGAAAGAAGGGAAGAGA
1 AGAAAGAAGGGAAGAGA
7394468 A
1 A
7394469 AGAAGAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (17 bp):
AGAAAGAAGGGAAGAGA
Found at i:7394931 original size:59 final size:60
Alignment explanation
Indices: 7394867--7395269 Score: 482
Period size: 59 Copynumber: 6.7 Consensus size: 60
7394857 TCTAAAAAAA
* *
7394867 TTCAAAAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAA-GATAAA-TT
1 TTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTA-AAAGTT
* * *
7394926 TTCAAAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTT
1 TTC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
* * * *
7394988 TTC-AAAAAATATTGTTG-GGAAAAAATTGAAAATATCAATTTTCCTCGAAATTAAAGGTT
1 TTCAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
* * *
7395047 TCCAAAAAAATATTTTTGGGGAAAGGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTT
1 TTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAG-TT
* * *
7395108 TTCAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAAG-T
1 TTC-AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
* * *
7395169 TTCCAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT-AAAG-T
1 TTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
* *
7395227 TTCAAAAGAATATTTTTTG-GAAAAAGTTGAAAGTATCAATTTT
1 TTCAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7395270 TCCTTATACT
Statistics
Matches: 298, Mismatches: 34, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
58 39 0.13
59 95 0.32
60 85 0.29
61 23 0.08
62 14 0.05
63 42 0.14
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (60 bp):
TTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTT
Found at i:7395208 original size:182 final size:177
Alignment explanation
Indices: 7394867--7395269 Score: 576
Period size: 182 Copynumber: 2.2 Consensus size: 177
7394857 TCTAAAAAAA
* *
7394867 TTCAAAAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAATTTTCAAA
1 TTCAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTGAAAGATAAATTTTCAAA
* *
7394932 AAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTTTTCAAAAAA
65 AAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTCCAAAAAA
7394997 TATTGTTGGGAAAAAATTGAAAATATCAATTTTCCTCGAAATTAAAGGT
130 TATTGTTGGGAAAAAATTGAAAATATCAATTTTCCTCGAAATTAAA-GT
* *
7395046 TTCCAAAAAAATATTTTTGGGGAAAGGTTGAAAGTATCAATTTTCCTCGAAA-TTAAAAGTTTTT
1 TT-CAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-GAAAGAT-AAA--TTTT
* *
7395110 CAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAAGTTTCCAA
61 CAAAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTCCAA
* * * * *
7395175 AAAGTATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGT
126 AAAATATTGTTG-GGAAAAAATTGAAAATATCAATTTTCCTCGAAATTAAAGT
* * *
7395227 TTCAAAAGAATATTTTTTGGAAAAAGTTGAAAGTATCAATTTT
1 TTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
7395270 TCCTTATACT
Statistics
Matches: 201, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
179 37 0.18
180 51 0.25
181 4 0.02
182 107 0.53
183 2 0.01
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (177 bp):
TTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTGAAAGATAAATTTTCAAAA
AAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTCCAAAAAAT
ATTGTTGGGAAAAAATTGAAAATATCAATTTTCCTCGAAATTAAAGT
Found at i:7395268 original size:27 final size:27
Alignment explanation
Indices: 7395181--7395270 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
7395171 CCAAAAAGTA
*
7395181 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTG-GAAAAAGTTGAAAGTATCAAT
* * *
7395209 TTTTCTCGAAATTAAAGTTTCAAAAGAAT--AT
1 TTTT-T-GGAA--AAAG-TT-GAAAGTATCAAT
7395240 TTTTTGGAAAAAGTTGAAAGTATCAAT
1 TTTTTGGAAAAAGTTGAAAGTATCAAT
7395267 TTTT
1 TTTT
7395271 CCTTATACTA
Statistics
Matches: 47, Mismatches: 7, Indels: 17
0.66 0.10 0.24
Matches are distributed among these distances:
25 6 0.13
26 2 0.04
27 10 0.21
28 4 0.09
29 5 0.11
30 2 0.04
31 10 0.21
32 2 0.04
33 6 0.13
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.40
Consensus pattern (27 bp):
TTTTTGGAAAAAGTTGAAAGTATCAAT
Found at i:7395707 original size:15 final size:15
Alignment explanation
Indices: 7395687--7395716 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7395677 AAAAGATTGG
7395687 TGGCGACTCCTTCAA
1 TGGCGACTCCTTCAA
7395702 TGGCGACTCCTTCAA
1 TGGCGACTCCTTCAA
7395717 GTCAATGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (15 bp):
TGGCGACTCCTTCAA
Found at i:7403349 original size:15 final size:15
Alignment explanation
Indices: 7403331--7403372 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
7403321 TTAAAACATG
*
7403331 AAACTCTAAAACCCC
1 AAACTCTAAAACCCA
* *
7403346 AAACCCTAAAATCCA
1 AAACTCTAAAACCCA
7403361 AAACTC-AAAACC
1 AAACTCTAAAACC
7403373 TTAAAAACTG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.52, C:0.36, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACTCTAAAACCCA
Found at i:7403378 original size:15 final size:16
Alignment explanation
Indices: 7403360--7403441 Score: 57
Period size: 16 Copynumber: 5.3 Consensus size: 16
7403350 CCTAAAATCC
7403360 AAAACT-CAAAACCTT
1 AAAACTCCAAAACCTT
* *
7403375 AAAAACT--GAAACCCT
1 -AAAACTCCAAAACCTT
* *
7403390 AAAA-TCCAAAATCTC
1 AAAACTCCAAAACCTT
7403405 AAAA-TCCTAAAACCTT
1 AAAACTCC-AAAACCTT
*
7403421 GAAACTCCAAAACCTT
1 AAAACTCCAAAACCTT
*
7403437 GAAAC
1 AAAAC
7403442 GAGACTCTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
13 1 0.02
14 4 0.08
15 17 0.32
16 28 0.53
17 3 0.06
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAACTCCAAAACCTT
Found at i:7403378 original size:37 final size:38
Alignment explanation
Indices: 7403336--7403418 Score: 116
Period size: 37 Copynumber: 2.2 Consensus size: 38
7403326 ACATGAAACT
7403336 CTAAAACCCCAAACCCTAAAATCCAAAA-CTCAAAA-C
1 CTAAAACCCCAAACCCTAAAATCCAAAATCTCAAAATC
* **
7403372 CTTAAAAACTGAAACCCTAAAATCCAAAATCTCAAAATC
1 C-TAAAACCCCAAACCCTAAAATCCAAAATCTCAAAATC
7403411 CTAAAACC
1 CTAAAACC
7403419 TTGAAACTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
36 1 0.03
37 24 0.60
38 13 0.32
39 2 0.05
ACGTcount: A:0.52, C:0.31, G:0.01, T:0.16
Consensus pattern (38 bp):
CTAAAACCCCAAACCCTAAAATCCAAAATCTCAAAATC
Found at i:7406075 original size:19 final size:18
Alignment explanation
Indices: 7406034--7406079 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
7406024 TCGAATAAAG
7406034 AAAATAAATAAACTAATGA
1 AAAATAAATAAAC-AATGA
7406053 AAAATAAATAAA-AGATGA
1 AAAATAAATAAACA-ATGA
7406071 TAAAATAAA
1 -AAAATAAA
7406080 AAATAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.04
18 4 0.16
19 20 0.80
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (18 bp):
AAAATAAATAAACAATGA
Found at i:7406321 original size:119 final size:117
Alignment explanation
Indices: 7406074--7406421 Score: 325
Period size: 119 Copynumber: 3.0 Consensus size: 117
7406064 AAGATGATAA
* * * * * *
7406074 AATAAAAAATAAAATTACAAGTGGTGATTTTAGTAAAAATAATTACACAAAT-AATTTTCTAAAA
1 AATAAAAAAAAAAATCACAAGTAGTGATTTTA-TTAAAATATTTATAC-AATGAATTTTCTAAAA
** * * *
7406138 TATTCTAAAAGCGTTAAAAATATTTTAGATTTTTTTTCAAACATAAAAAAAGTT
64 TATTCTAAAAGTATTAGAAATATTTTAGAATTTTTTTCAAACACAAAAAAAGTT
* *
7406192 AGTAACAAAAAAAAATCACAAGCAGTGATTTTATTAAAATATTTATACAATGAGATTTTCTAAAA
1 AATAA-AAAAAAAAATCACAAGTAGTGATTTTATTAAAATATTTATACAATGA-ATTTTCTAAAA
*
7406257 TATTCTAAAAATATTAGAAATATTTTA-AATTTTTTT-AACACACAAAAATATTA-TT
64 TATTCTAAAAGTATTAGAAATATTTTAGAATTTTTTTCAA-ACACAAAAA-A--AGTT
** * ** * * *
7406312 AATAAAAAAATAAAGCCACAAGTAGTGATTTTATTGAAA-ATTTATGTAAAGAAAATTTCTAAAG
1 AATAAAAAAA-AAAATCACAAGTAGTGATTTTATTAAAATATTTATACAATG-AATTTTCTAAAA
* * *
7406376 TATTCCAAAAGTATTGGAAATA-TTTAGAA--TTTTTCAAACATAAAAA
64 TATTCTAAAAGTATTAGAAATATTTTAGAATTTTTTTCAAACACAAAAA
7406422 TAAATATATA
Statistics
Matches: 191, Mismatches: 28, Indels: 23
0.79 0.12 0.10
Matches are distributed among these distances:
117 18 0.09
118 39 0.20
119 102 0.53
120 31 0.16
121 1 0.01
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (117 bp):
AATAAAAAAAAAAATCACAAGTAGTGATTTTATTAAAATATTTATACAATGAATTTTCTAAAATA
TTCTAAAAGTATTAGAAATATTTTAGAATTTTTTTCAAACACAAAAAAAGTT
Found at i:7416824 original size:110 final size:110
Alignment explanation
Indices: 7416630--7416855 Score: 364
Period size: 110 Copynumber: 2.1 Consensus size: 110
7416620 CTTTATTGAA
* * * * * * *
7416630 AAAAATAAACATACAGTATTTTTCCATTGTCAACTATATCAAAAATAGATTATGAGAGCTTATGA
1 AAAAAGAAACATACAGCACTTTGCCATTGTCAACTATATCAAAAATAGATGATAAAAGCTTATGA
7416695 TAAGAAAATTCATCATCGTCACTTCTAAGAAGGTGATTTAGTGCT
66 TAAGAAAATTCATCATCGTCACTTCTAAGAAGGTGATTTAGTGCT
7416740 AAAAAGAAACATACAGCACTTTGCCATTGTCAACTATATCAAAAA-AGGATGATAAAAGCTTATG
1 AAAAAGAAACATACAGCACTTTGCCATTGTCAACTATATCAAAAATA-GATGATAAAAGCTTATG
*
7416804 ATAAGAAAATTCATCCTCGTCACTTCTAAGAAGGTGATTTAGTGCT
65 ATAAGAAAATTCATCATCGTCACTTCTAAGAAGGTGATTTAGTGCT
7416850 AAAAAG
1 AAAAAG
7416856 GATCCTTCTA
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
109 1 0.01
110 106 0.99
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (110 bp):
AAAAAGAAACATACAGCACTTTGCCATTGTCAACTATATCAAAAATAGATGATAAAAGCTTATGA
TAAGAAAATTCATCATCGTCACTTCTAAGAAGGTGATTTAGTGCT
Found at i:7418065 original size:158 final size:159
Alignment explanation
Indices: 7417903--7418257 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 159
7417893 TTAAAAGTGC
* * * * *
7417903 TTTTTAAAATTGTTGAACCTCTACATAGATGAGCTTTCATTCTTAAGATTCATAAATCCTTCGAA
1 TTTTTAAAATTGTTGAACCTCTACTTAGAAGAGCTTTCATTATCAAAATTCATAAATCCTTCGAA
* *
7417968 TAGAATATTTAAAATTTTCAAAAGTTGTAGAACCTCTTCTTAAAAGAGCTTTTTAAAATTATTGA
66 TAGAATATTTAAAATTATCAAAAGTTATAGAACCTCTTCTTAAAAGAGCTTTTTAAAATTATTGA
*
7418033 G-CTTCTATTTAGAGGAG-TAATTTTAAA-T
131 GCCTT-TACTTAGAGGAGCT-ATTTTAAATT
* * * * * * *
7418061 TTTTTAAAGTTGTTGAGCCTATGCTTAGAAGTGCTTTCATTATCAAAATTCATAAGTCCTTTGAA
1 TTTTTAAAATTGTTGAACCTCTACTTAGAAGAGCTTTCATTATCAAAATTCATAAATCCTTCGAA
* * * * * * * * * *
7418126 TAGAATATTTTAAATTATCAAAAGTTATGGAGCTTTTTCTTATAGGAGTTTTTTAAAGTTGTTGA
66 TAGAATATTTAAAATTATCAAAAGTTATAGAACCTCTTCTTAAAAGAGCTTTTTAAAATTATTGA
* * *
7418191 GCCTTTGCTTAGATGAGCTCTTTTAAATT
131 GCCTTTACTTAGAGGAGCTATTTTAAATT
* *
7418220 TTTTTAAAAGTTGTTAAACCTCTACTTAGAGGAGCTTT
1 TTTTTAAAA-TTGTTGAACCTCTACTTAGAAGAGCTTT
7418258 TTCAAGATGA
Statistics
Matches: 158, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
158 123 0.78
159 13 0.08
160 22 0.14
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (159 bp):
TTTTTAAAATTGTTGAACCTCTACTTAGAAGAGCTTTCATTATCAAAATTCATAAATCCTTCGAA
TAGAATATTTAAAATTATCAAAAGTTATAGAACCTCTTCTTAAAAGAGCTTTTTAAAATTATTGA
GCCTTTACTTAGAGGAGCTATTTTAAATT
Found at i:7418318 original size:96 final size:94
Alignment explanation
Indices: 7418175--7418352 Score: 266
Period size: 96 Copynumber: 1.9 Consensus size: 94
7418165 TTATAGGAGT
* * * *
7418175 TTTTTAAAGTTGTTGAGCCTTTGCTTAGATGAGCTCTTTTAAATTTTTTTAAAAGTTGTTAAACC
1 TTTTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTCTTTTAAA-TTTTTT-AAAGTTGTTAAACC
*
7418240 TCTACTTAGAGGAGCTTTTTCAAGATGAAAA
64 TCTACTTAGAGGAACTTTTTCAAGATGAAAA
* *
7418271 TTTTTAAAGTTATTGAGTCTCTACTTAGAGGAGCTCTTTTAAATTTTTTAAAGTTGTTAAACCTT
1 TTTTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTCTTTTAAATTTTTTAAAGTTGTTAAACCTC
*
7418336 TACTTAGATGAACTTTT
66 TACTTAGAGGAACTTTT
7418353 ATTATCAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 30 0.41
95 6 0.08
96 38 0.51
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (94 bp):
TTTTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTCTTTTAAATTTTTTAAAGTTGTTAAACCTC
TACTTAGAGGAACTTTTTCAAGATGAAAA
Done.