Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 31 of 160
Found at i:7841587 original size:24 final size:26
Alignment explanation
Indices: 7841560--7841618 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
7841550 TATATTAAAA
**
7841560 TAAAATAT-ATTATATTTAATA-ATT
1 TAAAATATAATTATAAATAATACATT
7841584 TAAAATAAATAATTATAAATAATACATT
1 TAAAAT--ATAATTATAAATAATACATT
7841612 TAAAATA
1 TAAAATA
7841619 ATCTCAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 6 0.21
26 3 0.10
27 11 0.38
28 9 0.31
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
TAAAATATAATTATAAATAATACATT
Found at i:7841612 original size:28 final size:28
Alignment explanation
Indices: 7841554--7841619 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
7841544 ATTTTTTATA
**
7841554 TTAAAATAAAATATATTATATTTAATAAT
1 TTAAAAT-AAATATATTATAAATAATAAT
7841583 TTAAAATAAATA-ATTATAAATAATACAT
1 TTAAAATAAATATATTATAAATAATA-AT
7841611 TTAAAATAA
1 TTAAAATAA
7841620 TCTCAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 11 0.32
28 16 0.47
29 7 0.21
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (28 bp):
TTAAAATAAATATATTATAAATAATAAT
Found at i:7841620 original size:14 final size:13
Alignment explanation
Indices: 7841576--7841620 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
7841566 ATATTATATT
7841576 TAATAATTTAAAA
1 TAATAATTTAAAA
7841589 TAAATAA-TTATAAA
1 T-AATAATTTA-AAA
7841603 TAATACATTTAAAA
1 TAATA-ATTTAAAA
7841617 TAAT
1 TAAT
7841621 CTCAATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
13 8 0.29
14 17 0.61
15 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAATTTAAAA
Found at i:7841877 original size:2 final size:2
Alignment explanation
Indices: 7841870--7841894 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7841860 ATATAATTGT
7841870 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7841895 GAAAATATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7842790 original size:2 final size:2
Alignment explanation
Indices: 7842783--7842816 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7842773 TCTAAATTAA
7842783 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7842817 CTTATAGAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7844953 original size:2 final size:2
Alignment explanation
Indices: 7844946--7844984 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7844936 AAGCAAACCA
7844946 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7844985 CTGAGTTTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7852979 original size:10 final size:11
Alignment explanation
Indices: 7852949--7852980 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
7852939 CTAACTTTAT
7852949 TTATTAATAT-
1 TTATTAATATA
7852959 TTATTAATATA
1 TTATTAATATA
7852970 TT-TTAATATA
1 TTATTAATATA
7852980 T
1 T
7852981 AAAAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 19 0.90
11 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATTAATATA
Found at i:7853066 original size:3 final size:3
Alignment explanation
Indices: 7853058--7853082 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7853048 AAAAATACAC
7853058 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7853083 AAATCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7855684 original size:30 final size:29
Alignment explanation
Indices: 7855635--7855693 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
7855625 TTCAGAAAAG
7855635 AAAGAACTATTAACTATGAGAAGGCATAT
1 AAAGAACTATTAACTATGAGAAGGCATAT
* *
7855664 AAAGAAACTGTTACCTATGAGAAGGCATAT
1 AAAG-AACTATTAACTATGAGAAGGCATAT
7855694 CTAGACACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.24
Consensus pattern (29 bp):
AAAGAACTATTAACTATGAGAAGGCATAT
Found at i:7860885 original size:29 final size:29
Alignment explanation
Indices: 7860852--7860908 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
7860842 AATTATAATC
*
7860852 AAAATATTTATAATTCAAATATTATTTTA
1 AAAATATTTAAAATTCAAATATTATTTTA
* * *
7860881 AAAATTTTTAAAATTTAAATATTGTTTT
1 AAAATATTTAAAATTCAAATATTATTTT
7860909 GTATATTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (29 bp):
AAAATATTTAAAATTCAAATATTATTTTA
Found at i:7870500 original size:29 final size:29
Alignment explanation
Indices: 7870468--7870524 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
7870458 ATTTCTCTTA
*
7870468 GTATATATTCATATTAATTGTATTTATTC
1 GTATATATTCATATTAATTATATTTATTC
* *
7870497 GTATATATTCGTATTATTTATATTTATT
1 GTATATATTCATATTAATTATATTTATT
7870525 TGTGTCGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (29 bp):
GTATATATTCATATTAATTATATTTATTC
Found at i:7878992 original size:29 final size:29
Alignment explanation
Indices: 7878950--7879008 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
7878940 ATAAACTTGA
7878950 ATAAAAAATATTTTCAACATTATTTAATT
1 ATAAAAAATATTTTCAACATTATTTAATT
* * * *
7878979 ATAAATAATGTTTTCATCATTCTTTAATT
1 ATAAAAAATATTTTCAACATTATTTAATT
7879008 A
1 A
7879009 ACTTTTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.47
Consensus pattern (29 bp):
ATAAAAAATATTTTCAACATTATTTAATT
Found at i:7880973 original size:12 final size:12
Alignment explanation
Indices: 7880956--7880982 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7880946 AAAAATGATT
7880956 AAATAAAAAATA
1 AAATAAAAAATA
7880968 AAATAAAAAATA
1 AAATAAAAAATA
7880980 AAA
1 AAA
7880983 ACCAATAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:7886002 original size:18 final size:17
Alignment explanation
Indices: 7885965--7885998 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7885955 ATTTCATGAA
* *
7885965 ATAATTTACTTCTTAGT
1 ATAAATTACATCTTAGT
7885982 ATAAATTACATCTTAGT
1 ATAAATTACATCTTAGT
7885999 TATATTTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
ATAAATTACATCTTAGT
Found at i:7892978 original size:18 final size:19
Alignment explanation
Indices: 7892945--7892983 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7892935 TATTGAGACG
7892945 AAGATAAAATAAAAATGAA
1 AAGATAAAATAAAAATGAA
* *
7892964 AAGATTAAA-AAAAATTAA
1 AAGATAAAATAAAAATGAA
7892982 AA
1 AA
7892984 TTAATTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (19 bp):
AAGATAAAATAAAAATGAA
Found at i:7895801 original size:26 final size:26
Alignment explanation
Indices: 7895772--7895822 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7895762 ATAGTTTTAT
7895772 TGTACCAAAATCTCTTTGATGTATTC
1 TGTACCAAAATCTCTTTGATGTATTC
7895798 TGTACCAAAATCTCTTTGATGTATT
1 TGTACCAAAATCTCTTTGATGTATT
7895823 GGCTGATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (26 bp):
TGTACCAAAATCTCTTTGATGTATTC
Found at i:7899606 original size:52 final size:52
Alignment explanation
Indices: 7899503--7899606 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 52
7899493 TACAACCATA
* * *** *
7899503 CAAACTTATCGATTAAGAATCTCTTTCCTCTTAAAATTCTTCTTTTGCAAGT
1 CAAACTTACCGATTAAAAATCTCTTTCCTCTTAAAATTCTTCAACTACAAGT
* *
7899555 CAAACTTACCTATTAAAAATCAT-TTTCCTTTTAAAATTCTTCAACTACAAGT
1 CAAACTTACCGATTAAAAATC-TCTTTCCTCTTAAAATTCTTCAACTACAAGT
7899607 TTTCTTGTCC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 42 0.98
53 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (52 bp):
CAAACTTACCGATTAAAAATCTCTTTCCTCTTAAAATTCTTCAACTACAAGT
Found at i:7900523 original size:50 final size:52
Alignment explanation
Indices: 7900448--7900550 Score: 129
Period size: 50 Copynumber: 2.0 Consensus size: 52
7900438 TATAACCATA
* * *
7900448 CAAACTTATCGATTAAGAATATTTTTTCTCTTAAAATT-TT-TTTTGCAAGT
1 CAAACTTACCGATTAAGAATATTTTTCCTCTTAAAATTCTTCTATTGCAAGT
* * * *
7900498 CAAACTTACCTATTAAGAATTTTTTTCCTTTTAGAATTCTTCTATTGCAAGT
1 CAAACTTACCGATTAAGAATATTTTTCCTCTTAAAATTCTTCTATTGCAAGT
7900550 C
1 C
7900551 TTCTTATCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 32 0.73
51 2 0.05
52 10 0.23
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.47
Consensus pattern (52 bp):
CAAACTTACCGATTAAGAATATTTTTCCTCTTAAAATTCTTCTATTGCAAGT
Found at i:7900613 original size:22 final size:22
Alignment explanation
Indices: 7900567--7900613 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7900557 TCCATCAAGC
*
7900567 AATATCTAACAAATCATAAACA
1 AATATCTAACAAATCACAAACA
* *
7900589 AATATCTAACAAATCCCAAATA
1 AATATCTAACAAATCACAAACA
7900611 AAT
1 AAT
7900614 CTCTTATGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.23
Consensus pattern (22 bp):
AATATCTAACAAATCACAAACA
Found at i:7902388 original size:18 final size:17
Alignment explanation
Indices: 7902356--7902390 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7902346 CCGATTACTC
*
7902356 ATTTTTTTATATTTTAT
1 ATTTATTTATATTTTAT
7902373 ATTTATTTATTATTTTAT
1 ATTTATTTA-TATTTTAT
7902391 TTATGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTATTTATATTTTAT
Found at i:7902997 original size:12 final size:12
Alignment explanation
Indices: 7902980--7903005 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7902970 GATTTTTCAA
7902980 TTTTTTGAAATT
1 TTTTTTGAAATT
7902992 TTTTTTGAAATT
1 TTTTTTGAAATT
7903004 TT
1 TT
7903006 CAGATTTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTTTGAAATT
Found at i:7903746 original size:7 final size:7
Alignment explanation
Indices: 7903728--7903787 Score: 66
Period size: 7 Copynumber: 8.4 Consensus size: 7
7903718 ATTCTTTTTC
*
7903728 AAATAAA
1 AAATTAA
7903735 AAATTAA
1 AAATTAA
*
7903742 TAATTAA
1 AAATTAA
7903749 AAATTAA
1 AAATTAA
*
7903756 AAAATAA
1 AAATTAA
* *
7903763 TAATTAG
1 AAATTAA
7903770 AAATTAA
1 AAATTAA
7903777 AAATTAGA
1 AAATTA-A
7903785 AAA
1 AAA
7903788 ACATAACTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
7 39 0.91
8 4 0.09
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
AAATTAA
Found at i:7903752 original size:21 final size:21
Alignment explanation
Indices: 7903728--7903782 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
7903718 ATTCTTTTTC
7903728 AAATAAAAAATTAATAATTAA
1 AAATAAAAAATTAATAATTAA
*
7903749 AAATTAAAAAA-TAATAATTAG
1 AAA-TAAAAAATTAATAATTAA
*
7903770 AAATTAAAAATTA
1 AAATAAAAAATTA
7903783 GAAAAACATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 6 0.20
21 17 0.57
22 7 0.23
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
AAATAAAAAATTAATAATTAA
Found at i:7903793 original size:28 final size:29
Alignment explanation
Indices: 7903728--7903803 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
7903718 ATTCTTTTTC
* * *
7903728 AAATAAAAAATTAATAATTAAAAATTAAA
1 AAATAATAACTTAAAAATTAAAAATTAAA
*
7903757 AAATAATAA-TTAGAAATTAAAAATTAGAA
1 AAATAATAACTTAAAAATTAAAAATTA-AA
*
7903786 AAA-CATAACTTAAAAATT
1 AAATAATAACTTAAAAATT
7903804 TGTGAGAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
AAATAATAACTTAAAAATTAAAAATTAAA
Found at i:7908146 original size:21 final size:21
Alignment explanation
Indices: 7908122--7908170 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
7908112 GATCCATTTT
7908122 TTATTAGATAAA-AAAATTAAA
1 TTATT-GATAAATAAAATTAAA
7908143 TTATTGATAAATAAAATT-AA
1 TTATTGATAAATAAAATTAAA
*
7908163 TTTTTGAT
1 TTATTGAT
7908171 TTAATTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (21 bp):
TTATTGATAAATAAAATTAAA
Found at i:7908170 original size:20 final size:20
Alignment explanation
Indices: 7908122--7908162 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 20
7908112 GATCCATTTT
7908122 TTATTAGATAAAAAAATTAAA
1 TTATT-GATAAAAAAATTAAA
7908143 TTATTGATAAATAAAATTAA
1 TTATTGATAAA-AAAATTAA
7908163 TTTTTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TTATTGATAAAAAAATTAAA
Found at i:7908445 original size:1 final size:1
Alignment explanation
Indices: 7908439--7908477 Score: 51
Period size: 1 Copynumber: 39.0 Consensus size: 1
7908429 AAAACCAAAA
* * *
7908439 TTTTTTTTATTATTTTATTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7908478 CTATCATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:7911810 original size:12 final size:13
Alignment explanation
Indices: 7911783--7911811 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7911773 AACATACTAC
7911783 TTTATATGAGATT
1 TTTATATGAGATT
7911796 TTTATATGA-ATT
1 TTTATATGAGATT
7911808 TTTA
1 TTTA
7911812 GAGTTTTGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (13 bp):
TTTATATGAGATT
Found at i:7911891 original size:24 final size:24
Alignment explanation
Indices: 7911864--7911915 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7911854 TAGCGTCTTA
*
7911864 TTTAAGGTTATAAGGTTTCAATGT
1 TTTAAGGTTATAAGGTTTCAAGGT
* * *
7911888 TTTAGGGTTGTGAGGTTTCAAGGT
1 TTTAAGGTTATAAGGTTTCAAGGT
7911912 TTTA
1 TTTA
7911916 GGATTTCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.04, G:0.27, T:0.46
Consensus pattern (24 bp):
TTTAAGGTTATAAGGTTTCAAGGT
Found at i:7911927 original size:24 final size:24
Alignment explanation
Indices: 7911875--7911953 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
7911865 TTAAGGTTAT
* *
7911875 AAGGTTTCAATGTTTTAGGGTTGT-
1 AAGGTTTCAAGGTTTTAGGATT-TC
*
7911899 GAGGTTTCAAGGTTTTAGGATTTC
1 AAGGTTTCAAGGTTTTAGGATTTC
*
7911923 AAGGTTT-TAGAGTTTTAGGATTTC
1 AAGGTTTCAAG-GTTTTAGGATTTC
7911947 AAGGTTT
1 AAGGTTT
7911954 TAGAATTTTG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 3 0.06
24 45 0.94
ACGTcount: A:0.23, C:0.05, G:0.28, T:0.44
Consensus pattern (24 bp):
AAGGTTTCAAGGTTTTAGGATTTC
Found at i:7911953 original size:40 final size:41
Alignment explanation
Indices: 7911863--7911961 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
7911853 TTAGCGTCTT
* * *
7911863 ATTT-AAGGTTATAAGG-TTTCAATGTTTTAGGGTTGTGAGG
1 ATTTCAAGGTT-TTAGGATTTCAAGGTTTTAGAGTTGTGAGG
*
7911903 -TTTCAAGGTTTTAGGATTTCAAGGTTTTAGAGTT-TTAGG
1 ATTTCAAGGTTTTAGGATTTCAAGGTTTTAGAGTTGTGAGG
*
7911942 ATTTCAAGGTTTTAGAATTT
1 ATTTCAAGGTTTTAGGATTT
7911962 TGAGATTTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
39 11 0.22
40 40 0.78
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.45
Consensus pattern (41 bp):
ATTTCAAGGTTTTAGGATTTCAAGGTTTTAGAGTTGTGAGG
Found at i:7911954 original size:24 final size:24
Alignment explanation
Indices: 7911910--7911962 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
7911900 AGGTTTCAAG
7911910 GTTTTAGGATTTCAAGGTTTTAGA
1 GTTTTAGGATTTCAAGGTTTTAGA
7911934 GTTTTAGGATTTCAAGGTTTTAGA
1 GTTTTAGGATTTCAAGGTTTTAGA
*
7911958 ATTTT
1 GTTTT
7911963 GAGATTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.49
Consensus pattern (24 bp):
GTTTTAGGATTTCAAGGTTTTAGA
Found at i:7912017 original size:31 final size:31
Alignment explanation
Indices: 7911982--7912055 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
7911972 AGTTTGAAGG
7911982 TTTTA-GGTTTTAAGGCTTTG-AGATTTTAGGC
1 TTTTATGGTTTT-AGGCTTTGAAGATTTT-GGC
* * *
7912013 TTTTATGGTTTTAGGGTTTGAAGGTTTTGGG
1 TTTTATGGTTTTAGGCTTTGAAGATTTTGGC
7912044 TTTTATGGTTTT
1 TTTTATGGTTTT
7912056 GAGATTTTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 26 0.68
32 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.28, T:0.54
Consensus pattern (31 bp):
TTTTATGGTTTTAGGCTTTGAAGATTTTGGC
Found at i:7912024 original size:8 final size:8
Alignment explanation
Indices: 7912005--7912055 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
7911995 GGCTTTGAGA
*
7912005 TTTTAGGC
1 TTTTAGGG
*
7912013 TTTTATGG
1 TTTTAGGG
7912021 TTTTAGGG
1 TTTTAGGG
* *
7912029 TTTGAAGG
1 TTTTAGGG
7912037 TTTT-GGG
1 TTTTAGGG
*
7912044 TTTTATGG
1 TTTTAGGG
7912052 TTTT
1 TTTT
7912056 GAGATTTTAG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
7 6 0.18
8 28 0.82
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.57
Consensus pattern (8 bp):
TTTTAGGG
Found at i:7912024 original size:16 final size:15
Alignment explanation
Indices: 7911982--7912055 Score: 60
Period size: 16 Copynumber: 4.7 Consensus size: 15
7911972 AGTTTGAAGG
7911982 TTTTAGGTTTTAAGGC
1 TTTTAGGTTTT-AGGC
* *
7911998 TTTGAGATTTTAGGC
1 TTTTAGGTTTTAGGC
*
7912013 TTTTATGGTTTTAGGG
1 TTTTA-GGTTTTAGGC
* *
7912029 TTTGAAGGTTTT-GGG
1 TTT-TAGGTTTTAGGC
7912044 TTTTATGGTTTT
1 TTTTA-GGTTTT
7912056 GAGATTTTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
14 1 0.02
15 20 0.42
16 26 0.54
17 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.28, T:0.54
Consensus pattern (15 bp):
TTTTAGGTTTTAGGC
Found at i:7912063 original size:23 final size:23
Alignment explanation
Indices: 7912019--7912063 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7912009 AGGCTTTTAT
*
7912019 GGTTTTAGGGTTTGAAGGTTTTG
1 GGTTTTAGGGTTTGAAGATTTTG
*
7912042 GGTTTTATGGTTTTG-AGATTTT
1 GGTTTTA-GGGTTTGAAGATTTT
7912064 AGAGTTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.53
Consensus pattern (23 bp):
GGTTTTAGGGTTTGAAGATTTTG
Found at i:7912080 original size:55 final size:55
Alignment explanation
Indices: 7911965--7912086 Score: 142
Period size: 55 Copynumber: 2.2 Consensus size: 55
7911955 AGAATTTTGA
* *
7911965 GATTTTGA-GTTTGAAGGTTTTAGGTTTTAAGGCTTTGAGATTTTAGGCTTTTAT
1 GATTTTAAGGTTTGAAGGTTTTAGGTTTTAAGGCTTTGAGATTTTAGGCTTTAAT
* * * * *
7912019 GGTTTTAGGGTTTGAAGGTTTTGGGTTTTATGGTTTTGAGATTTTAGAG-TTTCAAT
1 GATTTTAAGGTTTGAAGGTTTTAGGTTTTAAGGCTTTGAGATTTTAG-GCTTT-AAT
7912075 -ATTTTAAGGTTT
1 GATTTTAAGGTTT
7912087 TGAGCTTTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
54 5 0.09
55 48 0.86
56 3 0.05
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (55 bp):
GATTTTAAGGTTTGAAGGTTTTAGGTTTTAAGGCTTTGAGATTTTAGGCTTTAAT
Found at i:7912190 original size:16 final size:16
Alignment explanation
Indices: 7912157--7912207 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
7912147 TAAGACAAGA
*
7912157 GTTTTGAG-TTTTATG
1 GTTTTGAGATTTTAAG
*
7912172 GTTTTGAGATTTTAGG
1 GTTTTGAGATTTTAAG
* *
7912188 GTTTTAATATTTTAAG
1 GTTTTGAGATTTTAAG
7912204 GTTT
1 GTTT
7912208 CGAGCTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.57
Consensus pattern (16 bp):
GTTTTGAGATTTTAAG
Found at i:7912197 original size:121 final size:121
Alignment explanation
Indices: 7912036--7912277 Score: 439
Period size: 121 Copynumber: 2.0 Consensus size: 121
7912026 GGGTTTGAAG
* *
7912036 GTTTTGGGTTTTATGGTTTTGAGATTTTAGAGTTTCAATATTTTAAGGTTTTGAGCTTTTGAAAT
1 GTTTTGAGTTTTATGGTTTTGAGATTTTAGAGTTTCAATATTTTAAGGTTTCGAGCTTTTGAAAT
7912101 TTCGAGGTTTTGGGATTTCATTTATTTATTATTATTATTTTATTTTTAAGACAAGA
66 TTCGAGGTTTTGGGATTTCATTTATTTATTATTATTATTTTATTTTTAAGACAAGA
* * *
7912157 GTTTTGAGTTTTATGGTTTTGAGATTTTAGGGTTTTAATATTTTAAGGTTTCGAGCTTTTGGAAT
1 GTTTTGAGTTTTATGGTTTTGAGATTTTAGAGTTTCAATATTTTAAGGTTTCGAGCTTTTGAAAT
7912222 TTCGAGGTTTTGGGATTTCATTTATTTATTATTATTATTTTATTTTTAAGACAAGA
66 TTCGAGGTTTTGGGATTTCATTTATTTATTATTATTATTTTATTTTTAAGACAAGA
7912278 ATTATTAAAA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 116 1.00
ACGTcount: A:0.24, C:0.04, G:0.19, T:0.53
Consensus pattern (121 bp):
GTTTTGAGTTTTATGGTTTTGAGATTTTAGAGTTTCAATATTTTAAGGTTTCGAGCTTTTGAAAT
TTCGAGGTTTTGGGATTTCATTTATTTATTATTATTATTTTATTTTTAAGACAAGA
Found at i:7912224 original size:16 final size:16
Alignment explanation
Indices: 7912205--7912240 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7912195 TATTTTAAGG
7912205 TTTCGAGCTTTTGGAA
1 TTTCGAGCTTTTGGAA
* *
7912221 TTTCGAGGTTTTGGGA
1 TTTCGAGCTTTTGGAA
7912237 TTTC
1 TTTC
7912241 ATTTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (16 bp):
TTTCGAGCTTTTGGAA
Found at i:7912557 original size:3 final size:3
Alignment explanation
Indices: 7912549--7912581 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7912539 ATCTTATTCT
7912549 TTA TTA TTA TTA TTA -TA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7912582 TCTCTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7912569 original size:14 final size:14
Alignment explanation
Indices: 7912550--7912581 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7912540 TCTTATTCTT
7912550 TATTATTATTATTA
1 TATTATTATTATTA
*
7912564 TATTATTATTATTT
1 TATTATTATTATTA
7912578 TATT
1 TATT
7912582 TCTCTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTATTATTATTA
Found at i:7912777 original size:3 final size:3
Alignment explanation
Indices: 7912769--7912793 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7912759 ATTTTTATTT
7912769 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7912794 ATCCAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7928937 original size:22 final size:20
Alignment explanation
Indices: 7928897--7928935 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7928887 TTGGTAAAAA
*
7928897 AAAAAAGAGAAAAAGAAATG
1 AAAAAAGAGAAAAAAAAATG
7928917 AAAAAAGAGAACAAAAAAA
1 AAAAAAGAGAA-AAAAAAA
7928936 ATAATGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (20 bp):
AAAAAAGAGAAAAAAAAATG
Found at i:7929835 original size:20 final size:20
Alignment explanation
Indices: 7929812--7929850 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7929802 AATATGTTTA
*
7929812 CATGATTATTAATTTATTTG
1 CATGATTATTAATTAATTTG
7929832 CATGATTATTAATTAATTT
1 CATGATTATTAATTAATTT
7929851 ATTTGTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
CATGATTATTAATTAATTTG
Found at i:7929976 original size:33 final size:35
Alignment explanation
Indices: 7929917--7930009 Score: 90
Period size: 33 Copynumber: 2.8 Consensus size: 35
7929907 TTTATATTAT
*
7929917 TATTATATAA-TTATATATTTAATTGCAAG-TTTA
1 TATTGTATAATTTATATATTTAATTGCAAGTTTTA
* *
7929950 T-TTGTATAATTTATAT-TATTATTTGCATGTTTTA
1 TATTGTATAATTTATATAT-TTAATTGCAAGTTTTA
**
7929984 TATTGT-TAA-TTGCATATTTAATTGCA
1 TATTGTATAATTTATATATTTAATTGCA
7930010 TGTCTATTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
32 8 0.16
33 28 0.57
34 9 0.18
35 4 0.08
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (35 bp):
TATTGTATAATTTATATATTTAATTGCAAGTTTTA
Found at i:7929983 original size:21 final size:21
Alignment explanation
Indices: 7929959--7929998 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7929949 ATTTGTATAA
*
7929959 TTTATATTATTATTTGCATGT
1 TTTATATTATTAATTGCATGT
*
7929980 TTTATATTGTTAATTGCAT
1 TTTATATTATTAATTGCAT
7929999 ATTTAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (21 bp):
TTTATATTATTAATTGCATGT
Found at i:7929987 original size:52 final size:52
Alignment explanation
Indices: 7929874--7929972 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 52
7929864 CATGATTATT
** *
7929874 ATTATATATTTAATTGCATTTTTATTTGCATGATTTATATTATTATTATATA
1 ATTATATATTTAATTGCAAGTTTATTTGCATAATTTATATTATTATTATATA
*
7929926 ATTATATATTTAATTGCAAGTTTATTTGTATAATTTATATTATTATT
1 ATTATATATTTAATTGCAAGTTTATTTGCATAATTTATATTATTATT
7929973 TGCATGTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (52 bp):
ATTATATATTTAATTGCAAGTTTATTTGCATAATTTATATTATTATTATATA
Found at i:7930246 original size:20 final size:19
Alignment explanation
Indices: 7930177--7930250 Score: 59
Period size: 20 Copynumber: 4.0 Consensus size: 19
7930167 ATTACATAAT
*
7930177 TATTAATATATTTGCACGA
1 TATTAATATATTTGCATGA
*
7930196 TATT-ATATGTTT--AT-A
1 TATTAATATATTTGCATGA
*
7930211 TCATTATTAT-TATTGCATGA
1 T-ATTAATATAT-TTGCATGA
7930231 TAATTAATATATTTGCATGA
1 T-ATTAATATATTTGCATGA
7930251 CATTCTTGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
15 2 0.05
16 5 0.12
17 5 0.12
18 7 0.16
19 6 0.14
20 17 0.40
21 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (19 bp):
TATTAATATATTTGCATGA
Found at i:7935360 original size:20 final size:21
Alignment explanation
Indices: 7935335--7935374 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7935325 GCACTAAGGC
*
7935335 ACCTTTTC-TTGCCAATATTT
1 ACCTTTACTTTGCCAATATTT
*
7935355 ACCTTTACTTTGCCTATATT
1 ACCTTTACTTTGCCAATATT
7935375 GGTGACCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.20, C:0.25, G:0.05, T:0.50
Consensus pattern (21 bp):
ACCTTTACTTTGCCAATATTT
Found at i:7939320 original size:172 final size:172
Alignment explanation
Indices: 7939028--7939354 Score: 465
Period size: 172 Copynumber: 1.9 Consensus size: 172
7939018 TTTGAGGATA
* * * *
7939028 TGTTGACCTAATTGATGCAAGCAAACAATGCCAACATACAAAGTCAAGGCATATCAATCAAAAAC
1 TGTTGACCCAATTAATGCAAGCAAACAATGCCAACATACAAAGTCAAGGCACATCAATAAAAAAC
* * * * * *
7939093 CTAGAAAATCAAATAGGTCAACTTGTCTAAGCCATAGCTAATCGACCAATAGGTACCTTACCTAG
66 CTAGAAAATCAAATAGGTCAACTTGCCCAAGCCATAACCAATCGACCAATAGGTACCCTACCTAA
*
7939158 TAAAACTAAAACCAATCTAAAAAGGTAAAATAGTAAATGATG
131 TAAAACTAAAACCAATCCAAAAAGGTAAAATAGTAAATGATG
* * * *
7939200 TGTTGACCCAATTAATGCAAGCTAATAATGCTAACATACAAAGTCAAGGCACATCAATAAAAAAT
1 TGTTGACCCAATTAATGCAAGCAAACAATGCCAACATACAAAGTCAAGGCACATCAATAAAAAAC
* * * *
7939265 CTAGAAAATCAAATAGGTCAACTTGCCCAAGCCATAACCAATCGGCTAGTAGGTACCCTGCCTAA
66 CTAGAAAATCAAATAGGTCAACTTGCCCAAGCCATAACCAATCGACCAATAGGTACCCTACCTAA
* *
7939330 TACAACTGAAACCAATCCAAAAAGG
131 TAAAACTAAAACCAATCCAAAAAGG
7939355 CAAGGTAAAA
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
172 134 1.00
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.21
Consensus pattern (172 bp):
TGTTGACCCAATTAATGCAAGCAAACAATGCCAACATACAAAGTCAAGGCACATCAATAAAAAAC
CTAGAAAATCAAATAGGTCAACTTGCCCAAGCCATAACCAATCGACCAATAGGTACCCTACCTAA
TAAAACTAAAACCAATCCAAAAAGGTAAAATAGTAAATGATG
Found at i:7939511 original size:18 final size:18
Alignment explanation
Indices: 7939488--7939523 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7939478 GGTTTCATAG
* *
7939488 AAAATAAGGATATTTTAA
1 AAAATAAAGAGATTTTAA
7939506 AAAATAAAGAGATTTTAA
1 AAAATAAAGAGATTTTAA
7939524 GACTTAGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
AAAATAAAGAGATTTTAA
Found at i:7940308 original size:18 final size:18
Alignment explanation
Indices: 7940285--7940325 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
7940275 GACTCTATTA
*
7940285 CTATTAGGAAAACCTTTT
1 CTATTAGGAAAACCTTTC
7940303 CTATTAGGAAAACCTTTC
1 CTATTAGGAAAACCTTTC
7940321 CTATT
1 CTATT
7940326 TACTGTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (18 bp):
CTATTAGGAAAACCTTTC
Found at i:7943185 original size:63 final size:63
Alignment explanation
Indices: 7943098--7943216 Score: 211
Period size: 63 Copynumber: 1.9 Consensus size: 63
7943088 ATATATAGTG
*
7943098 TCTATACCAACACTTTGTACAACCTTCGATATAGGTAAACTTTTTCTGACGATATAAAGAGTA
1 TCTATACCAACACTTTGTACAACCTTCGACATAGGTAAACTTTTTCTGACGATATAAAGAGTA
* *
7943161 TCTATACCAACACTTTGTACAACCTTCGACATAGGTAAACTTTTTTTGACGTTATA
1 TCTATACCAACACTTTGTACAACCTTCGACATAGGTAAACTTTTTCTGACGATATA
7943217 TAAATATTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (63 bp):
TCTATACCAACACTTTGTACAACCTTCGACATAGGTAAACTTTTTCTGACGATATAAAGAGTA
Found at i:7943362 original size:16 final size:17
Alignment explanation
Indices: 7943343--7943379 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7943333 CTGTAATAAA
7943343 AATTTC-CAAAAACTAT
1 AATTTCTCAAAAACTAT
*
7943359 AATTTCTTAAAAACTAT
1 AATTTCTCAAAAACTAT
7943376 AATT
1 AATT
7943380 ATTAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTTCTCAAAAACTAT
Found at i:7943384 original size:16 final size:17
Alignment explanation
Indices: 7943350--7943384 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7943340 AAAAATTTCC
*
7943350 AAAAACTATAATTTCTT
1 AAAAACTATAATTTATT
7943367 AAAAACTATAA-TTATT
1 AAAAACTATAATTTATT
7943383 AA
1 AA
7943385 TAAATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAACTATAATTTATT
Found at i:7945252 original size:11 final size:11
Alignment explanation
Indices: 7945234--7945275 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
7945224 GCAATATCTG
7945234 ACAAATCTCAA
1 ACAAATCTCAA
* *
7945245 ATAAATCTCTA
1 ACAAATCTCAA
*
7945256 ACAAATCCCAA
1 ACAAATCTCAA
7945267 ACAAATCTC
1 ACAAATCTC
7945276 TTATGGGATT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:7945259 original size:22 final size:22
Alignment explanation
Indices: 7945234--7945276 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7945224 GCAATATCTG
* *
7945234 ACAAATCTCAAATAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
7945256 ACAAATCCCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
7945277 TATGGGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:7945612 original size:25 final size:25
Alignment explanation
Indices: 7945549--7945612 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 25
7945539 TTCATGTCTC
* *
7945549 GAACCATCGGCTCTTTCCACATCTT
1 GAACCTTCAGCTCTTTCCACATCTT
* * * *
7945574 GAATCTTTAACTC-TTCTCACATTTT
1 GAACCTTCAGCTCTTTC-CACATCTT
7945599 GAACCTTCAGCTCT
1 GAACCTTCAGCTCT
7945613 GATACCACTT
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.22, C:0.31, G:0.09, T:0.38
Consensus pattern (25 bp):
GAACCTTCAGCTCTTTCCACATCTT
Found at i:7946211 original size:52 final size:52
Alignment explanation
Indices: 7946144--7946248 Score: 131
Period size: 52 Copynumber: 2.0 Consensus size: 52
7946134 TATAACCACA
*
7946144 CAAACTTGCCCATTAAGAATC-CCTCTCATCTTAGAATTCTTCTCCTGCAAGT
1 CAAACTTACCCATTAAGAATCTCCTCTC-TCTTAGAATTCTTCTCCTGCAAGT
* * * * **
7946196 CAAACTTACCTATTAAGAATCTTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTACCCATTAAGAATCTCCTCTCTCTTAGAATTCTTCTCCTGCAAGT
7946248 C
1 C
7946249 TTCTTGTCCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 41 0.91
53 4 0.09
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.38
Consensus pattern (52 bp):
CAAACTTACCCATTAAGAATCTCCTCTCTCTTAGAATTCTTCTCCTGCAAGT
Found at i:7946289 original size:11 final size:11
Alignment explanation
Indices: 7946275--7946314 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7946265 AATATCTGAT
*
7946275 AAATCTCAAAT
1 AAATCTCAAAC
*
7946286 AAATCTCTAAC
1 AAATCTCAAAC
*
7946297 AAATCCCAAAC
1 AAATCTCAAAC
7946308 AAATCTC
1 AAATCTC
7946315 TTATGGGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:7946652 original size:25 final size:25
Alignment explanation
Indices: 7946589--7946652 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 25
7946579 CTCATGTCTC
* *
7946589 GAACCATCGGCTCTTTCCACATCTT
1 GAACCTTCAGCTCTTTCCACATCTT
* * * *
7946614 GAATCTTTAACTC-TTCTCACATTTT
1 GAACCTTCAGCTCTTTC-CACATCTT
7946639 GAACCTTCAGCTCT
1 GAACCTTCAGCTCT
7946653 GATACCACTT
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.22, C:0.31, G:0.09, T:0.38
Consensus pattern (25 bp):
GAACCTTCAGCTCTTTCCACATCTT
Found at i:7947251 original size:52 final size:52
Alignment explanation
Indices: 7947184--7947288 Score: 131
Period size: 52 Copynumber: 2.0 Consensus size: 52
7947174 TATAACCACA
*
7947184 CAAACTTGCCCATTAAGAATC-CCTCTCATCTTAGAATTCTTCTCCTGCAAGT
1 CAAACTTACCCATTAAGAATCTCCTCTC-TCTTAGAATTCTTCTCCTGCAAGT
* * * * **
7947236 CAAACTTACCTATTAAGAATCTTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTACCCATTAAGAATCTCCTCTCTCTTAGAATTCTTCTCCTGCAAGT
7947288 C
1 C
7947289 TTCTTGTCCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 41 0.91
53 4 0.09
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.38
Consensus pattern (52 bp):
CAAACTTACCCATTAAGAATCTCCTCTCTCTTAGAATTCTTCTCCTGCAAGT
Found at i:7947329 original size:11 final size:11
Alignment explanation
Indices: 7947315--7947354 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7947305 AATATCTGAT
*
7947315 AAATCTCAAAT
1 AAATCTCAAAC
*
7947326 AAATCTCTAAC
1 AAATCTCAAAC
*
7947337 AAATCCCAAAC
1 AAATCTCAAAC
7947348 AAATCTC
1 AAATCTC
7947355 TTATGGGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:7948370 original size:11 final size:11
Alignment explanation
Indices: 7948352--7948393 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
7948342 GCAATATCTG
7948352 ACAAATCTCAA
1 ACAAATCTCAA
* *
7948363 ATAAATCTCTA
1 ACAAATCTCAA
*
7948374 ACAAATCCCAA
1 ACAAATCTCAA
7948385 ACAAATCTC
1 ACAAATCTC
7948394 TTATGGGATT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:7948377 original size:22 final size:22
Alignment explanation
Indices: 7948352--7948394 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7948342 GCAATATCTG
* *
7948352 ACAAATCTCAAATAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
7948374 ACAAATCCCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
7948395 TATGGGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:7957403 original size:55 final size:56
Alignment explanation
Indices: 7957277--7957475 Score: 222
Period size: 56 Copynumber: 3.6 Consensus size: 56
7957267 GAAATATTAT
* ** * ** *
7957277 AAGTCTATATTGACAAACGTTAACCGTCGGTATAGGTAAGAAAAATTAAAACATAT
1 AAGTCTATACTGACAGTCATTAACCGTCGGTATAAATAAGAAAAATTAAAACATAC
* * * * *
7957333 AAATCTATACTGACAGTCGTTAACCGTCGGAATAAACAAG-AAAGTTAAAACATAC
1 AAGTCTATACTGACAGTCATTAACCGTCGGTATAAATAAGAAAAATTAAAACATAC
* * *
7957388 AAGTCTATACTGACAGGCATTAACCATCAGTATAAATAAGAAAAATTAAAACATAC
1 AAGTCTATACTGACAGTCATTAACCGTCGGTATAAATAAGAAAAATTAAAACATAC
* *
7957444 AAGTTTGTACTGACATGT-ATTAACCGTCGGTA
1 AAGTCTATACTGACA-GTCATTAACCGTCGGTA
7957476 AAAGGTATAA
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
55 46 0.39
56 71 0.60
57 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (56 bp):
AAGTCTATACTGACAGTCATTAACCGTCGGTATAAATAAGAAAAATTAAAACATAC
Found at i:7968905 original size:50 final size:50
Alignment explanation
Indices: 7968814--7968910 Score: 126
Period size: 49 Copynumber: 1.9 Consensus size: 50
7968804 ATTTTTTTAT
* * * *
7968814 TTCTAAATTTTTCACCATTTGGGCATGTTTAGAATTTTCTCT-TTTTAAA
1 TTCTAAATATTTCACCATTTGGGCATGCTAAAAATTTTCTCTCTTTTAAA
7968863 TTCTAAATATTTCACCATTTGGGTCTAT-CTAAAAATTTTCTCTCTTTT
1 TTCTAAATATTTCACCATTTGGG-C-ATGCTAAAAATTTTCTCTCTTTT
7968911 TTCTAATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 22 0.54
50 13 0.32
51 6 0.15
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (50 bp):
TTCTAAATATTTCACCATTTGGGCATGCTAAAAATTTTCTCTCTTTTAAA
Found at i:7969555 original size:4 final size:4
Alignment explanation
Indices: 7969546--7969576 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
7969536 AATACTTTAA
*
7969546 AAAT AAAT AAAC AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
7969577 AATAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:7969585 original size:12 final size:12
Alignment explanation
Indices: 7969544--7969586 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7969534 AAAATACTTT
7969544 AAAAATAAATAA
1 AAAAATAAATAA
*
7969556 ACAAATAAATAA
1 AAAAATAAATAA
*
7969568 ATAAATAAA-AA
1 AAAAATAAATAA
7969579 TAAAAATA
1 -AAAAATA
7969587 CCAAAACAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAAATAAATAA
Found at i:7970409 original size:14 final size:13
Alignment explanation
Indices: 7970390--7970435 Score: 60
Period size: 12 Copynumber: 3.5 Consensus size: 13
7970380 AATTCAACCA
7970390 TTTTATTTTCTCT-T
1 TTTTATTTT-T-TAT
7970404 TTTTATTTTTTAT
1 TTTTATTTTTTAT
7970417 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
7970429 TTTTATT
1 TTTTATT
7970436 AATAAAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.43
13 8 0.27
14 9 0.30
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:7970412 original size:7 final size:7
Alignment explanation
Indices: 7970390--7970432 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
7970380 AATTCAACCA
7970390 TTTTATT
1 TTTTATT
* *
7970397 TTCTCTT
1 TTTTATT
7970404 TTTTATT
1 TTTTATT
7970411 TTTTA-T
1 TTTTATT
7970417 TTTTA-T
1 TTTTATT
7970423 TTTTATT
1 TTTTATT
7970430 TTT
1 TTT
7970433 ATTAATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTATT
Found at i:7970419 original size:6 final size:6
Alignment explanation
Indices: 7970403--7970435 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
7970393 TATTTTCTCT
7970403 TTTTTA TTTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TT
7970436 AATAAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:7970672 original size:43 final size:43
Alignment explanation
Indices: 7970625--7971006 Score: 458
Period size: 43 Copynumber: 8.8 Consensus size: 43
7970615 TCTTCTAAAC
* *
7970625 AGAGGCTCAATAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
* ** *
7970668 AGAGGTTCAATGACTTTGAAAAATAAATAAGGCTCTTCTAAGT
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
* * *
7970711 AGAGACTCAACCACTTTGAAAAAATAAATAAGGCTCTTCTAAGT
1 AGAGGCTCAACAACTTTG-AAAAATAAATAAGGCTCCTCTAAGT
* * *
7970755 AAAGGCTCAACAACTTTGAAAAAATAAATAAAGCCCCTCTAAGT
1 AGAGGCTCAACAACTTTG-AAAAATAAATAAGGCTCCTCTAAGT
* * * * *
7970799 AGAGGCTCAACGACCTTGAAAAACAAATAACGTTCCTCTAAGT
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
** * *
7970842 AGAGGCTCAATGATTTTGAAAAATAAATAAGACTCCTCTAAGT
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
* * * **
7970885 AGAGGCTCAACAACTTTTAAAAAATAGATAAGGCTCTTCTAAAC
1 AGAGGCTCAACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAGT
* * *
7970929 AGATGCTTAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGC
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
* *
7970972 ATAAGCTCAACAACTTTGAAAAATAAATAAGGCTC
1 AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTC
7971007 ATCGACAATC
Statistics
Matches: 291, Mismatches: 46, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
43 178 0.61
44 113 0.39
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (43 bp):
AGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGT
Found at i:7970918 original size:174 final size:173
Alignment explanation
Indices: 7970618--7971006 Score: 526
Period size: 174 Copynumber: 2.2 Consensus size: 173
7970608 TAAAAACTCT
* * * *
7970618 TCTAAACAGAGGCTCAATAACTTTGAAAAATAAATAAGGCTCCTCTAAATAGAGGTTCAATGACT
1 TCTAAGCAGAGGCTCAACAACTTTGAAAAATAAATAACGCTCCTCTAAATAGAGGCTCAATGACT
* * *
7970683 TTGAAAAATAAATAAGGCTCTTCTAAGTAGAGACTCAACCACTTTGAAAAAATAAATAAGGCTCT
66 TTGAAAAATAAATAAGACTCCTCTAAGTAGAGACTCAACAACTTTGAAAAAATAAATAAGGCTCT
**
7970748 TCTAAGTAAAGGCTCAACAACTTTGAAAAAATAAATAAAGCCCC
131 TCTAAACAAAGGCTCAACAACTTTG-AAAAATAAATAAAGCCCC
* * * * * * *
7970792 TCTAAGTAGAGGCTCAACGACCTTGAAAAACAAATAACGTTCCTCTAAGTAGAGGCTCAATGATT
1 TCTAAGCAGAGGCTCAACAACTTTGAAAAATAAATAACGCTCCTCTAAATAGAGGCTCAATGACT
* * *
7970857 TTGAAAAATAAATAAGACTCCTCTAAGTAGAGGCTCAACAACTTTTAAAAAATAGATAAGGCTCT
66 TTGAAAAATAAATAAGACTCCTCTAAGTAGAGACTCAACAACTTTGAAAAAATAAATAAGGCTCT
* * * * *
7970922 TCTAAACAGATGCTTAACAACTTTGAAAAATAAATAAGGCTCC
131 TCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAAAGCCCC
* * *
7970965 TCTAAGCATAAGCTCAACAACTTTGAAAAATAAATAAGGCTC
1 TCTAAGCAGAGGCTCAACAACTTTGAAAAATAAATAACGCTC
7971007 ATCGACAATC
Statistics
Matches: 183, Mismatches: 32, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
173 50 0.27
174 133 0.73
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (173 bp):
TCTAAGCAGAGGCTCAACAACTTTGAAAAATAAATAACGCTCCTCTAAATAGAGGCTCAATGACT
TTGAAAAATAAATAAGACTCCTCTAAGTAGAGACTCAACAACTTTGAAAAAATAAATAAGGCTCT
TCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAAAGCCCC
Found at i:7972742 original size:18 final size:19
Alignment explanation
Indices: 7972719--7972774 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 19
7972709 TGAGTTTTCA
*
7972719 TTTTCTC-TCTTTTCATAT
1 TTTTCTCATCTTTTCACAT
*
7972737 TTTTCTCATTTTTTCACA-
1 TTTTCTCATCTTTTCACAT
*
7972755 -TTTCTAATCTTTTCACAT
1 TTTTCTCATCTTTTCACAT
7972773 TT
1 TT
7972775 CATTTTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 15 0.48
18 7 0.23
19 9 0.29
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTCTCATCTTTTCACAT
Found at i:7972758 original size:17 final size:17
Alignment explanation
Indices: 7972738--7972817 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 17
7972728 TTTTCATATT
7972738 TTTCTCATTTTTTCACA
1 TTTCTCATTTTTTCACA
* *
7972755 TTTCTAATCTTTTCACA
1 TTTCTCATTTTTTCACA
**
7972772 -TT-TCATTTTTTTCATT
1 TTTCTCA-TTTTTTCACA
*
7972788 TTTCTC-TTCTTTTCACT
1 TTTCTCATT-TTTTCACA
*
7972805 TTTCACATTTTTT
1 TTTCTCATTTTTT
7972818 TACTGTATCC
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
15 2 0.04
16 11 0.22
17 33 0.66
18 4 0.08
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTCTCATTTTTTCACA
Found at i:7972792 original size:33 final size:34
Alignment explanation
Indices: 7972745--7972818 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 34
7972735 ATTTTTCTCA
7972745 TTTTTTCACATTTCTAATCTTTTCACATTT-CAT
1 TTTTTTCACATTTCTAATCTTTTCACATTTACAT
** ** *
7972778 TTTTTTCATTTTTCTCTTCTTTTCACTTTTCACAT
1 TTTTTTCACATTTCTAATCTTTTCACATTT-ACAT
7972813 TTTTTT
1 TTTTTT
7972819 ACTGTATCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 25 0.74
35 9 0.26
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.65
Consensus pattern (34 bp):
TTTTTTCACATTTCTAATCTTTTCACATTTACAT
Found at i:7974727 original size:138 final size:137
Alignment explanation
Indices: 7974447--7974727 Score: 420
Period size: 138 Copynumber: 2.0 Consensus size: 137
7974437 GTCTTTTTTT
7974447 TCTTTGGTGCCTTCTTGATTGGAGCTTTTTATCCTTTCAACTTCTCATTCTTAACGACATTCTCA
1 TCTTTGGTGCCTTCTTGATTGGAGCTTTTTATCCTTTCAACTTCTCATTCTTAACGACATTCTCA
* *
7974512 ATGATTTCATCAAAGATCATCCTATCATTTTTCATAATAGAGAGATTTTAAAGTGTTGACAAACA
66 ATGATTTCATCAAAGATCACCCTACCATTTTTCATAATA-AGAGATTTTAAAGTGTTGACAAACA
**
7974577 ACACTTTT
130 ACACTTGG
* * * * *
7974585 TCTTTGGTGCCTTCTTGGTTTGAGCTTTTTCTCCTTTCAACTTGTCATTTTTAACGACATTCTCA
1 TCTTTGGTGCCTTCTTGATTGGAGCTTTTTATCCTTTCAACTTCTCATTCTTAACGACATTCTCA
* * *
7974650 ATGATTTCATTAGAGATCACCCTACCATTTTTTCATAAT-AGAGATTTTAAAGTGTTGACAAATA
66 ATGATTTCATCAAAGATCACCCTACCA-TTTTTCATAATAAGAGATTTTAAAGTGTTGACAAACA
7974714 ACACTGTGG
130 ACACT-TGG
7974723 TCTTT
1 TCTTT
7974728 TTCTTAGTTA
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
137 29 0.22
138 89 0.69
139 11 0.09
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (137 bp):
TCTTTGGTGCCTTCTTGATTGGAGCTTTTTATCCTTTCAACTTCTCATTCTTAACGACATTCTCA
ATGATTTCATCAAAGATCACCCTACCATTTTTCATAATAAGAGATTTTAAAGTGTTGACAAACAA
CACTTGG
Found at i:7976894 original size:59 final size:59
Alignment explanation
Indices: 7976674--7977013 Score: 406
Period size: 60 Copynumber: 5.8 Consensus size: 59
7976664 TGCTTTTGTG
* ** * *
7976674 CAAGAAAAATTGATACTTTCAATTTTTTTTC-AAAATA--TTTTTTAAAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAGAAA-TTTATTTT
* * * * *
7976731 CGAGGAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGTAAATTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAG-AAATTTATTTT
* * *
7976791 TAAGAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTACAAAGCTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTAGAAA-TTTATTTT
* * *
7976851 CAAGGAAATTTGATACTTTCAACTTTTCATCAAAAATATTTTTTTT-GAAAATTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAG-AAATTTATTTT
* *
7976910 TAAGAAAAATTGATACTTTCAACTTTTTCCT-AAAAATATTTTTTTTAGAAACTTATTTT
1 CAAGAAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTTAGAAATTTATTTT
7976969 CAA-AGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 CAAGA-AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
7977014 GAATTTTATT
Statistics
Matches: 242, Mismatches: 29, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
57 24 0.10
58 14 0.06
59 90 0.37
60 110 0.45
61 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.46
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAGAAATTTATTTT
Found at i:7977038 original size:5 final size:5
Alignment explanation
Indices: 7977030--7977103 Score: 60
Period size: 5 Copynumber: 13.4 Consensus size: 5
7977020 TATTTAAAGG
*
7977030 AAATA AAATGA TAAAATA AAATAA AAATTA AAATA AAGA-A AATTA AAATTA
1 AAATA AAAT-A -A-AATA AAAT-A AAA-TA AAATA AA-ATA AAATA AAA-TA
7977081 AAATA AGAATA AAATA AAATA AA
1 AAATA A-AATA AAATA AAATA AA
7977104 CAAATATTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
5 31 0.53
6 21 0.36
7 3 0.05
8 3 0.05
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (5 bp):
AAATA
Found at i:7977038 original size:119 final size:119
Alignment explanation
Indices: 7976675--7977013 Score: 497
Period size: 119 Copynumber: 2.9 Consensus size: 119
7976665 GCTTTTGTGC
** * ** * *
7976675 AAGAAAAATTGATACTTTCAA-TTTTTTTTCAAAATA--TTTTTTAAAAATTTTAATTTCGAGGA
1 AAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAAAAAGCTTATTTTCAAGGA
* * *
7976737 AAATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGTAAATTTATTTTT
66 AAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTATTTTT
* *
7976792 AAGAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTACAAAGCTTATTTTCAAGGA
1 AAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAAAAAGCTTATTTTCAAGGA
* *
7976857 AATTTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTGAAAATTTATTTTT
66 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTT
* *
7976911 AAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAGAAA-CTTATTTTCAAAGA
1 AAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAAAAAGCTTATTTTCAAGGA
7976975 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
66 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
7977014 GAATTTTATT
Statistics
Matches: 200, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
117 21 0.10
118 61 0.31
119 69 0.34
120 49 0.25
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (119 bp):
AAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAAAAAGCTTATTTTCAAGGA
AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTT
Found at i:7977062 original size:6 final size:5
Alignment explanation
Indices: 7977040--7977103 Score: 67
Period size: 5 Copynumber: 12.0 Consensus size: 5
7977030 AAATAAAATG
*
7977040 ATAAA ATAAA ATAAAA ATTAAA ATAAA GA-AAA TTAAA ATTAAA ATAAGA
1 ATAAA ATAAA AT-AAA A-TAAA ATAAA -ATAAA ATAAA A-TAAA ATAA-A
7977089 ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA
7977104 CAAATATTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
5 31 0.61
6 19 0.37
7 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:7977062 original size:118 final size:119
Alignment explanation
Indices: 7976735--7977062 Score: 286
Period size: 119 Copynumber: 2.8 Consensus size: 119
7976725 TAATTTCGAG
* ** * *
7976735 GAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGTAAATTTATTTTTAAGAAAAA
1 GAAAATTGATACTTTCAACTTTTCATCAAAAATA-TTTTTTTTGAAAATTTATTTTAAAGAAAAA
* *** * * ***** *
7976800 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTACAAAGCTTATTTTCAAG
65 ATGATAAAATAAAATAAAAACTAAAAATATTTTTTTTACAAAGCTTATTTTCAAA
* * *
7976855 GAAATTTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTGAAAATTTATTTTTAAGAAAAAT
1 GAAAATTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTGAAAATTTATTTTAAAGAAAAAA
*** * * ***** *
7976920 TGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAGAAA-CTTATTTTCAAA
66 TGATAAAATAAAATAAAAACTAAAAATATTTTTTTTACAAAGCTTATTTTCAAA
* *
7976973 GAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTG-AATTTTA-TTTAAAGGAAATA
1 GAAAATTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTGAAAATTTATTTTAAA-G-AA-A
*
7977035 AAATGATAAAATAAAATAAAAATTAAAA
63 AAATGATAAAATAAAATAAAAACTAAAA
7977063 TAAAGAAAAT
Statistics
Matches: 181, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
115 5 0.03
116 7 0.04
117 10 0.06
118 60 0.33
119 69 0.38
120 30 0.17
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.44
Consensus pattern (119 bp):
GAAAATTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTGAAAATTTATTTTAAAGAAAAAA
TGATAAAATAAAATAAAAACTAAAAATATTTTTTTTACAAAGCTTATTTTCAAA
Found at i:7977076 original size:27 final size:26
Alignment explanation
Indices: 7977042--7977103 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
7977032 ATAAAATGAT
7977042 AAAATAAAATAAAAATTAA-AATAAAG
1 AAAATAAAATAAAAA-TAAGAATAAAG
* *
7977068 AAAATTAAAATTAAAATAAGAATAAAAT
1 AAAA-TAAAATAAAAATAAGAAT-AAAG
7977096 AAAATAAA
1 AAAATAAA
7977104 CAAATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 7 0.23
27 17 0.55
28 7 0.23
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (26 bp):
AAAATAAAATAAAAATAAGAATAAAG
Found at i:7977077 original size:21 final size:21
Alignment explanation
Indices: 7977047--7977114 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
7977037 ATGATAAAAT
*
7977047 AAAATAAAAATTAAAATAAAG
1 AAAATTAAAATTAAAATAAAG
7977068 AAAATTAAAATTAAAAT-AAG
1 AAAATTAAAATTAAAATAAAG
*
7977088 --AA-TAAAA-TAAAATAAAC
1 AAAATTAAAATTAAAATAAAG
7977105 AAATATTAAA
1 AAA-ATTAAA
7977115 CAAATCTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 6 0.15
17 7 0.17
18 2 0.05
19 1 0.03
20 4 0.10
21 20 0.50
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (21 bp):
AAAATTAAAATTAAAATAAAG
Found at i:7977095 original size:38 final size:38
Alignment explanation
Indices: 7977024--7977114 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
7977014 GAATTTTATT
*
7977024 TAAAGGAAA-TAAAATGATAAAATAAAATAAAAATTAAAA
1 TAAAGAAAATTAAAAT-ATAAAATAAAATAAAAA-TAAAA
7977063 TAAAGAAAATTAAAAT-TAAAATAAGAAT-AAAATAAAA
1 TAAAGAAAATTAAAATATAAAATAA-AATAAAAATAAAA
*
7977100 TAAACAAATATTAAA
1 TAAAGAAA-ATTAAA
7977115 CAAATCTAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
37 12 0.26
38 18 0.38
39 11 0.23
40 6 0.13
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.22
Consensus pattern (38 bp):
TAAAGAAAATTAAAATATAAAATAAAATAAAAATAAAA
Found at i:7977421 original size:17 final size:17
Alignment explanation
Indices: 7977399--7977446 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
7977389 TTTCTCAGAA
7977399 TCTCTTCTTCTCTTCTC
1 TCTCTTCTTCTCTTCTC
* *
7977416 TCTCTTCCCTTCTTTTTTC
1 TCTCTT--CTTCTCTTCTC
7977435 TCT-TTCTTCTCT
1 TCTCTTCTTCTCT
7977447 CTAAAACCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 6 0.23
17 6 0.23
18 2 0.08
19 12 0.46
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTCTTCTC
Found at i:7977997 original size:13 final size:13
Alignment explanation
Indices: 7977964--7978003 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
7977954 TTAAAGGAAG
7977964 AAAAGAAATAA-AT
1 AAAA-AAATAATAT
*
7977977 AAATAAATAATAT
1 AAAAAAATAATAT
7977990 AAAAAAATAATAT
1 AAAAAAATAATAT
7978003 A
1 A
7978004 TTAATTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAAAAATAATAT
Found at i:7978028 original size:18 final size:18
Alignment explanation
Indices: 7978005--7978043 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7977995 AATAATATAT
*
7978005 TAATTAATAGATAAACAA
1 TAATTAACAGATAAACAA
*
7978023 TAATTAACAGATAAATAA
1 TAATTAACAGATAAACAA
7978041 TAA
1 TAA
7978044 CATATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
TAATTAACAGATAAACAA
Found at i:7978062 original size:14 final size:14
Alignment explanation
Indices: 7978021--7978063 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
7978011 ATAGATAAAC
*
7978021 AATAATTAACAGATA
1 AATAA-TAACATATA
7978036 AATAATAACATATA
1 AATAATAACATATA
7978050 AATAGATAA-ATATA
1 AATA-ATAACATATA
7978064 TTAACAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (14 bp):
AATAATAACATATA
Found at i:7978068 original size:24 final size:22
Alignment explanation
Indices: 7978031--7978075 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
7978021 AATAATTAAC
*
7978031 AGATAAATAATAACATATAAAT
1 AGATAAATAATAACAGATAAAT
7978053 AGATAAATATATTAACAGATAAA
1 AGATAAATA-A-TAACAGATAAA
7978076 AACATACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (22 bp):
AGATAAATAATAACAGATAAAT
Found at i:7978091 original size:40 final size:42
Alignment explanation
Indices: 7978003--7978094 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 42
7977993 AAAATAATAT
* *
7978003 ATTAATTAATAGATAAACAATAATTAACAGATAAATAATAAC
1 ATTAATAAATAGATAAACAATAATTAACAGATAAAAAATAAC
*
7978045 A-T-ATAAATAGATAAA-TAT-ATTAACAGATAAAAACAT-AC
1 ATTAATAAATAGATAAACAATAATTAACAGATAAAAA-ATAAC
7978083 ATTAATAAATAG
1 ATTAATAAATAG
7978095 TAATAATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
38 17 0.39
39 5 0.11
40 20 0.45
41 1 0.02
42 1 0.02
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (42 bp):
ATTAATAAATAGATAAACAATAATTAACAGATAAAAAATAAC
Found at i:7978100 original size:60 final size:60
Alignment explanation
Indices: 7978036--7978171 Score: 147
Period size: 59 Copynumber: 2.3 Consensus size: 60
7978026 TTAACAGATA
* *
7978036 AATAATAACATATAAATA-GATAAATATATTA-ACAGATAAAAACATACAT-TAATA-AATAGT
1 AATAATAA-ATATAAAAATGATAAATACA-TAGA-AGATAAAAACATACATATAATATAATA-T
* * *
7978096 AATAATAAATA-AAAAATGATAAATACATAGAAGATAAAGATATATATATAATATAATAT
1 AATAATAAATATAAAAATGATAAATACATAGAAGATAAAAACATACATATAATATAATAT
7978155 AATATATAAATATAAAA
1 AATA-ATAAATATAAAA
7978172 TACAAAATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
58 19 0.29
59 23 0.35
60 19 0.29
61 4 0.06
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (60 bp):
AATAATAAATATAAAAATGATAAATACATAGAAGATAAAAACATACATATAATATAATAT
Found at i:7983397 original size:200 final size:200
Alignment explanation
Indices: 7983037--7983404 Score: 476
Period size: 200 Copynumber: 1.8 Consensus size: 200
7983027 AAAAGAATAC
* * *
7983037 AATTACTTTTATTGAAATTTCATCTAAATTATTTCACCATTTGGGATAAATTTAAAAAAATTTCT
1 AATTACTTTTATTGAAATTTCATCTAAATCATTCCACCATTTGGGACAAATTTAAAAAAATTTCT
* * * ** * * *
7983102 TACCTAGAGATTTCTTAAAAAATTTTCATTTGAAATTTTTAGGAATCTCATCCTTGGGTAATTAG
66 TACCTAAAAATTTCTTAAAAAATTTCCATTTGAAATTTTTAAAAATCTCATCATTGGATAATTAA
7983167 CATTGAATTTCAAAATCTATATTATTTTTTAATTTTTTAATTTTTTTCTTTTTTTTTGAAAATAA
131 CATTGAATTTCAAAATCTATATTATTTTTTAATTTTTTAATTTTTTTCTTTTTTTTTGAAAATAA
7983232 ATATT
196 ATATT
* *
7983237 AATTA-TTATTATTGAAATTTTATCTAAATCATTCCACCATTTGGGACAAATTTAGACAAAATTT
1 AATTACTT-TTATTGAAATTTCATCTAAATCATTCCACCATTTGGGACAAATTTA-AAAAAATTT
* *
7983301 TTTACCTAAAAA-TT-TTATAAAAATTTACCATTTGAAATTTTTAAAAATTTCATCATTGGATAA
64 CTTACCTAAAAATTTCTTA-AAAAATTT-CCATTTGAAATTTTTAAAAATCTCATCATTGGATAA
* * * * *
7983364 TTAATATTTAA-TTCAAAATTTTTA-TATTTTTTTATTATTTT
127 TTAACATTGAATTTCAAAATCTATATTATTTTTTAATT-TTTT
7983405 CCCTAAACTT
Statistics
Matches: 143, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
199 16 0.11
200 72 0.50
201 55 0.38
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (200 bp):
AATTACTTTTATTGAAATTTCATCTAAATCATTCCACCATTTGGGACAAATTTAAAAAAATTTCT
TACCTAAAAATTTCTTAAAAAATTTCCATTTGAAATTTTTAAAAATCTCATCATTGGATAATTAA
CATTGAATTTCAAAATCTATATTATTTTTTAATTTTTTAATTTTTTTCTTTTTTTTTGAAAATAA
ATATT
Found at i:7986198 original size:18 final size:17
Alignment explanation
Indices: 7986172--7986210 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7986162 AAATTATATT
7986172 TTTAATTATTAATACTAA
1 TTTAATTA-TAATACTAA
* *
7986190 TTTATTTATAATCCTAA
1 TTTAATTATAATACTAA
7986207 TTTA
1 TTTA
7986211 GTATGATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTAATTATAATACTAA
Found at i:7990265 original size:20 final size:22
Alignment explanation
Indices: 7990242--7990288 Score: 80
Period size: 20 Copynumber: 2.2 Consensus size: 22
7990232 ATAATTTAAT
7990242 TAATTAAATA-ATAAAA-ATAA
1 TAATTAAATATATAAAATATAA
7990262 TAATTAAATATATAAAATATAA
1 TAATTAAATATATAAAATATAA
7990284 TAATT
1 TAATT
7990289 TTTTAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 10 0.40
21 6 0.24
22 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
TAATTAAATATATAAAATATAA
Found at i:7990279 original size:29 final size:26
Alignment explanation
Indices: 7990227--7990306 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
7990217 AAAGTAAGAT
* *
7990227 TAAAAATAATTTAATTAATTAAATAA
1 TAAAAATAATTTAAATAATAAAATAA
7990253 TAAAAATAATAATTAAATATATAAAAT-A
1 TAAAAATAAT--TTAAATA-ATAAAATAA
* ** *
7990281 TAATAATTTTTTAAATAATTAAATAA
1 TAAAAATAATTTAAATAATAAAATAA
7990307 AAATGTTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.14
26 18 0.41
28 14 0.32
29 6 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
TAAAAATAATTTAAATAATAAAATAA
Found at i:7990326 original size:26 final size:27
Alignment explanation
Indices: 7990264--7990326 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 27
7990254 AAAAATAATA
* *
7990264 ATTAAATATATAAAATATAATAATTTT
1 ATTAAATAAATTAAATATAATAATTTT
7990291 -TTAAAT-AATTAAATA-AA-AATGTTT
1 ATTAAATAAATTAAATATAATAAT-TTT
7990315 ATTAAATAAATT
1 ATTAAATAAATT
7990327 TTAATTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 3 0.10
24 5 0.16
25 13 0.42
26 10 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (27 bp):
ATTAAATAAATTAAATATAATAATTTT
Found at i:7992199 original size:12 final size:12
Alignment explanation
Indices: 7992182--7992208 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7992172 TTTTAAAAAT
7992182 TTAAATATTTTA
1 TTAAATATTTTA
7992194 TTAAATATTTTA
1 TTAAATATTTTA
7992206 TTA
1 TTA
7992209 TAATTTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAAATATTTTA
Found at i:8002257 original size:13 final size:14
Alignment explanation
Indices: 8002224--8002259 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8002214 AAAATATTTT
* *
8002224 TTAAAAATTATGAC
1 TTAAAAATTATAAA
8002238 TTAAAAATTATAAA
1 TTAAAAATTATAAA
8002252 TTAAAAAT
1 TTAAAAAT
8002260 ATATCATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (14 bp):
TTAAAAATTATAAA
Found at i:8002555 original size:30 final size:30
Alignment explanation
Indices: 8002521--8002620 Score: 119
Period size: 30 Copynumber: 3.3 Consensus size: 30
8002511 TTTATTGTAA
*
8002521 TTAATTAAAATTTTAAATATTTATTTTTAT
1 TTAATTAAATTTTTAAATATTTATTTTTAT
* * *
8002551 TTAATTGAGTTTTTGAATATTTATTTTTAT
1 TTAATTAAATTTTTAAATATTTATTTTTAT
* * * *
8002581 CTAATTTAATTTTTTAACATTTATTTTTAT
1 TTAATTAAATTTTTAAATATTTATTTTTAT
*
8002611 TTATTTAAAT
1 TTAATTAAAT
8002621 CTTTGATTTG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (30 bp):
TTAATTAAATTTTTAAATATTTATTTTTAT
Found at i:8002721 original size:31 final size:28
Alignment explanation
Indices: 8002646--8002723 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 28
8002636 AATAAATATT
* *
8002646 AATAATTAATTTTTATTTAATAAAAACA
1 AATATTTAATTTTAATTTAATAAAAACA
8002674 AATATTTAAAATTTTAATATTATATAAAAA-A
1 AATATTT--AATTTTAAT-TTA-ATAAAAACA
8002705 TAATTATTTAATTTTAATT
1 -AA-TATTTAATTTTAATT
8002724 CAAAAATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
28 6 0.14
30 9 0.21
31 13 0.31
32 9 0.21
33 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (28 bp):
AATATTTAATTTTAATTTAATAAAAACA
Found at i:8005246 original size:13 final size:13
Alignment explanation
Indices: 8005210--8005261 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
8005200 ATGTATATAT
**
8005210 TATATTAATAAAA
1 TATATTAATTTAA
8005223 T-TATT-ATTTAA
1 TATATTAATTTAA
*
8005234 TATTTTAATTTAA
1 TATATTAATTTAA
*
8005247 GATATTAATTTAA
1 TATATTAATTTAA
8005260 TA
1 TA
8005262 AAAATATTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 5 0.16
12 7 0.23
13 19 0.61
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (13 bp):
TATATTAATTTAA
Found at i:8005261 original size:42 final size:41
Alignment explanation
Indices: 8005206--8005307 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 41
8005196 ATTTATGTAT
* *
8005206 ATATT-ATATTAATAAAATTATTAT-TTAATATTTTAATTTAAG
1 ATATTAAT-TTAATAAAAATATTATATTAATA-TATAA-TTAAG
*
8005248 ATATTAATTTAATAAAAATATTATATTTATATATAATTAAG
1 ATATTAATTTAATAAAAATATTATATTAATATATAATTAAG
8005289 ATA-TAATTTATAATAAAAA
1 ATATTAA-TT-TAATAAAAA
8005308 ATAAATTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
40 3 0.06
41 10 0.19
42 33 0.62
43 7 0.13
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (41 bp):
ATATTAATTTAATAAAAATATTATATTAATATATAATTAAG
Found at i:8009814 original size:26 final size:26
Alignment explanation
Indices: 8009785--8009841 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
8009775 TTTAATGTTG
*
8009785 ATTTAAATTTAAATT-TAAATTTTTTT
1 ATTTAAATTTAAATTAT-AATTTTATT
* *
8009811 ATTTTAATTTTAATTATAATTTTATT
1 ATTTAAATTTAAATTATAATTTTATT
8009837 -TTTAA
1 ATTTAA
8009842 TTTTGGTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.15
26 21 0.81
27 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
ATTTAAATTTAAATTATAATTTTATT
Found at i:8009815 original size:6 final size:6
Alignment explanation
Indices: 8009772--8009845 Score: 58
Period size: 6 Copynumber: 12.0 Consensus size: 6
8009762 AAAATGTCAC
* * * * * *
8009772 AATTTT AATGTT GATTTA AATTTA AATTTA AATTTTTT TATTTT AATTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AA--TTTT AATTTT AATTTT
* *
8009822 AATTAT AATTTT ATTTTT AATTTT
1 AATTTT AATTTT AATTTT AATTTT
8009846 GGTCAAAGTT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
6 50 0.93
8 4 0.07
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:8011179 original size:27 final size:26
Alignment explanation
Indices: 8011133--8011286 Score: 83
Period size: 27 Copynumber: 6.0 Consensus size: 26
8011123 AAATCATATC
*
8011133 ATGCAATAATAAATATATTAATAATA
1 ATGCAATAATAAATAAATTAATAATA
* *
8011159 ATGCAATATTATAATAAATTAATAATC
1 ATGCAATAATA-AATAAATTAATAATA
* *
8011186 ATGCATTCATGCAA-AAATATATTAATTAATC
1 ATGCA---AT--AATAAATAAATTAA-TAATA
* * *
8011217 ATGC-A-AATAAATATATCAATAATC
1 ATGCAATAATAAATAAATTAATAATA
*
8011241 ATGC---AAT---TAAATTAATAATC
1 ATGCAATAATAAATAAATTAATAATA
*
8011261 ATGCAATATTACAATAAATTAATAAT
1 ATGCAATAATA-AATAAATTAATAAT
8011287 CATGTAATTA
Statistics
Matches: 104, Mismatches: 9, Indels: 29
0.73 0.06 0.20
Matches are distributed among these distances:
20 15 0.14
23 5 0.05
24 11 0.11
25 10 0.10
26 10 0.10
27 31 0.30
30 11 0.11
31 10 0.10
32 1 0.01
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (26 bp):
ATGCAATAATAAATAAATTAATAATA
Found at i:8011218 original size:23 final size:22
Alignment explanation
Indices: 8011192--8011266 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 22
8011182 AATCATGCAT
8011192 TCATGCAAAAATATATTAATTAA
1 TCATGCAAAAATATATTAA-TAA
*
8011215 TCATGCAAATAAATATATCAATAA
1 TCATGC-AA-AAATATATTAATAA
* *
8011239 TCATGC--AATTAAATTAATAA
1 TCATGCAAAAATATATTAATAA
8011259 TCATGCAA
1 TCATGCAA
8011267 TATTACAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 17 0.39
23 6 0.14
24 11 0.25
25 10 0.23
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (22 bp):
TCATGCAAAAATATATTAATAA
Found at i:8011245 original size:47 final size:47
Alignment explanation
Indices: 8011200--8011301 Score: 120
Period size: 47 Copynumber: 2.2 Consensus size: 47
8011190 ATTCATGCAA
* *
8011200 AAATATATTAATTAATCATGCAA-A-TA-AATATATCAATAATCATGC
1 AAATAAATTAA-TAATCATGCAATATTACAATAAATCAATAATCATGC
* * *
8011245 AATTAAATTAATAATCATGCAATATTACAATAAATTAATAATCATGT
1 AAATAAATTAATAATCATGCAATATTACAATAAATCAATAATCATGC
*
8011292 AATTAAATTA
1 AAATAAATTA
8011302 GATTCATGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 11 0.22
45 10 0.20
46 2 0.04
47 26 0.53
ACGTcount: A:0.52, C:0.09, G:0.04, T:0.35
Consensus pattern (47 bp):
AAATAAATTAATAATCATGCAATATTACAATAAATCAATAATCATGC
Found at i:8011259 original size:20 final size:21
Alignment explanation
Indices: 8011192--8011268 Score: 84
Period size: 23 Copynumber: 3.5 Consensus size: 21
8011182 AATCATGCAT
*
8011192 TCATGCAAAAATATATTAATTAA
1 TCATGCAATAA-ATATTAA-TAA
8011215 TCATGCAAATAAATATATCAATAA
1 TCATGC-AATAAATAT-T-AATAA
*
8011239 TCATGCAATTAA-ATTAATAA
1 TCATGCAATAAATATTAATAA
8011259 TCATGCAATA
1 TCATGCAATA
8011269 TTACAATAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
20 14 0.29
21 1 0.02
22 2 0.04
23 15 0.31
24 14 0.29
25 2 0.04
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (21 bp):
TCATGCAATAAATATTAATAA
Found at i:8011271 original size:17 final size:17
Alignment explanation
Indices: 8011229--8011271 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 17
8011219 GCAAATAAAT
*
8011229 ATATCAATAATCATGCA
1 ATATTAATAATCATGCA
8011246 ATTAAATTAATAATCATGCA
1 A-T--ATTAATAATCATGCA
8011266 ATATTA
1 ATATTA
8011272 CAATAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
17 5 0.23
18 1 0.05
19 1 0.05
20 15 0.68
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (17 bp):
ATATTAATAATCATGCA
Found at i:8011300 original size:20 final size:20
Alignment explanation
Indices: 8011234--8011301 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
8011224 TAAATATATC
*
8011234 AATAATCATGCAATTAAATT
1 AATAATCATGTAATTAAATT
*
8011254 AATAATCATGCAATATTACAATAAATT
1 AATAATCATG------TA-ATTAAATT
8011281 AATAATCATGTAATTAAATT
1 AATAATCATGTAATTAAATT
8011301 A
1 A
8011302 GATTCATGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
20 18 0.47
21 2 0.05
26 1 0.03
27 17 0.45
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.35
Consensus pattern (20 bp):
AATAATCATGTAATTAAATT
Found at i:8011345 original size:16 final size:16
Alignment explanation
Indices: 8011305--8011370 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 16
8011295 TAAATTAGAT
* *
8011305 TCATGCAAATATATTAA
1 TCATGCAAATAAAAT-A
8011322 TCATGCAAATAAAATA
1 TCATGCAAATAAAATA
* **
8011338 TCAGGCAAATAACTTA
1 TCATGCAAATAAAATA
*
8011354 TCATGCAAATATAATA
1 TCATGCAAATAAAATA
8011370 T
1 T
8011371 TAATCATGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
16 27 0.68
17 13 0.32
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (16 bp):
TCATGCAAATAAAATA
Found at i:8012414 original size:75 final size:75
Alignment explanation
Indices: 8012316--8012521 Score: 254
Period size: 75 Copynumber: 2.7 Consensus size: 75
8012306 CTATCGAAGC
** * * *
8012316 TTAAGCTTT-GAAAAATAAAGTACTTTTCCACCGAGGCTTCAACTTTGATAAATAAAGTAC-TCA
1 TTAA-CTTTAGAAAAATAAAGTACTCATCCATCGAAGCTTCAACTTTGAAAAATAAAGTACTTC-
8012379 TCCACCAAGGCT
64 TCCACCAAGGCT
* * *
8012391 TTAACTTTAGAAAAATAAGGTACTCATCCATCGATGCTTCAACTTTGAAAAATAAAGTACTTCTT
1 TTAACTTTAGAAAAATAAAGTACTCATCCATCGAAGCTTCAACTTTGAAAAATAAAGTACTTCTC
**
8012456 CACTGAGGCT
66 CACCAAGGCT
* * * *
8012466 TCAACTTTAAAAAAATAAAGTACTCATCCATTGAAGCTTTAACTTTGAAAAATAAA
1 TTAACTTTAGAAAAATAAAGTACTCATCCATCGAAGCTTCAACTTTGAAAAATAAA
8012522 ATGTTCCTTC
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
74 4 0.04
75 108 0.95
76 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (75 bp):
TTAACTTTAGAAAAATAAAGTACTCATCCATCGAAGCTTCAACTTTGAAAAATAAAGTACTTCTC
CACCAAGGCT
Found at i:8012416 original size:38 final size:37
Alignment explanation
Indices: 8012285--8012521 Score: 235
Period size: 37 Copynumber: 6.4 Consensus size: 37
8012275 TTTTTTTTGT
* * * * * *
8012285 TTTGAAAAGTAAAATACTCCTCTATCGAAGCTT-AAGC
1 TTTGAAAAATAAAGTACTCATCCACCGAGGCTTCAA-C
**
8012322 TTTGAAAAATAAAGTACTTTTCCACCGAGGCTTCAAC
1 TTTGAAAAATAAAGTACTCATCCACCGAGGCTTCAAC
* * *
8012359 TTTGATAAATAAAGTACTCATCCACCAAGGCTTTAAC
1 TTTGAAAAATAAAGTACTCATCCACCGAGGCTTCAAC
* * *
8012396 TTTAGAAAAATAAGGTACTCATCCATCGATGCTTCAAC
1 TTT-GAAAAATAAAGTACTCATCCACCGAGGCTTCAAC
* *
8012434 TTTGAAAAATAAAGTACTTC-TTCACTGAGGCTTCAAC
1 TTTGAAAAATAAAGTAC-TCATCCACCGAGGCTTCAAC
* ** * *
8012471 TTTAAAAAAATAAAGTACTCATCCATTGAAGCTTTAAC
1 TTT-GAAAAATAAAGTACTCATCCACCGAGGCTTCAAC
8012509 TTTGAAAAATAAA
1 TTTGAAAAATAAA
8012522 ATGTTCCTTC
Statistics
Matches: 166, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 102 0.61
38 64 0.39
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (37 bp):
TTTGAAAAATAAAGTACTCATCCACCGAGGCTTCAAC
Found at i:8012516 original size:112 final size:111
Alignment explanation
Indices: 8012285--8012523 Score: 313
Period size: 112 Copynumber: 2.1 Consensus size: 111
8012275 TTTTTTTTGT
* * *
8012285 TTTGAAAAGTAAAATACTCCTCTATCGAAGCTTAAGCTTTGAAAAATAAAGTACTTTTCCACCGA
1 TTTGAAAAATAAAATACTCATCCATCGAAGCTTAAGCTTTGAAAAATAAAGTACTTTTCCACCGA
* *
8012350 GGCTTCAACTTTGATAAATAAAGTACTCATCCACCAAGGCTTTAAC
66 GGCTTCAACTTTAAAAAATAAAGTACTCATCCACCAAGGCTTTAAC
** *
8012396 TTTAGAAAAATAAGGTACTCATCCATCGATGCTTCAA-CTTTGAAAAATAAAGTACTTCTT-CAC
1 TTT-GAAAAATAAAATACTCATCCATCGAAGCTT-AAGCTTTGAAAAATAAAGTACTT-TTCCAC
* **
8012459 TGAGGCTTCAACTTTAAAAAAATAAAGTACTCATCCATTGAA-GCTTTAAC
63 CGAGGCTTCAACTTT-AAAAAATAAAGTACTCATCCA-CCAAGGCTTTAAC
8012509 TTTGAAAAATAAAAT
1 TTTGAAAAATAAAAT
8012524 GTTCCTTCAT
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
111 3 0.03
112 71 0.65
113 34 0.31
114 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (111 bp):
TTTGAAAAATAAAATACTCATCCATCGAAGCTTAAGCTTTGAAAAATAAAGTACTTTTCCACCGA
GGCTTCAACTTTAAAAAATAAAGTACTCATCCACCAAGGCTTTAAC
Found at i:8012566 original size:43 final size:43
Alignment explanation
Indices: 8012513--8012609 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 43
8012503 TTTAACTTTG
* ** * * *
8012513 AAAAATAAAATGTTCCTTCATAATTGAGACATTGAAACTTTTA
1 AAAAATAAAATGCTCCCCCACAACTGAGACATTAAAACTTTTA
*
8012556 AAAAATAAAATGCTCCCCCACAACTGAGGCATTAAAACTTTTA
1 AAAAATAAAATGCTCCCCCACAACTGAGACATTAAAACTTTTA
*
8012599 AAAATTAAAAT
1 AAAAATAAAAT
8012610 ACTTTTTCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.29
Consensus pattern (43 bp):
AAAAATAAAATGCTCCCCCACAACTGAGACATTAAAACTTTTA
Found at i:8012633 original size:42 final size:43
Alignment explanation
Indices: 8012537--8012646 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
8012527 CCTTCATAAT
* * * *
8012537 TGAGACATTGAAACTTTTAAAAAATAAAATGCTCCCCCACAAC
1 TGAGGCATTAAAACTTTTAAAAATTAAAATACTCCCCCACAAC
****
8012580 TGAGGCATTAAAACTTTTAAAAATTAAAATACTTTTTCACAAC
1 TGAGGCATTAAAACTTTTAAAAATTAAAATACTCCCCCACAAC
*
8012623 TGAGG-TTTAAAACTTTTGAAAAAT
1 TGAGGCATTAAAACTTTT-AAAAAT
8012647 AGAAAAGTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 11 0.19
43 46 0.81
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (43 bp):
TGAGGCATTAAAACTTTTAAAAATTAAAATACTCCCCCACAAC
Found at i:8012696 original size:22 final size:22
Alignment explanation
Indices: 8012671--8012732 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
8012661 GGTTTGAGGG
8012671 ATTATACCTGGAGGTTTTGAAA
1 ATTATACCTGGAGGTTTTGAAA
** * *
8012693 ATTATGTCTGAAGGTCTT-AAA
1 ATTATACCTGGAGGTTTTGAAA
*
8012714 ATTATACTTGGAGGTTTTG
1 ATTATACCTGGAGGTTTTG
8012733 GAGATTTTGG
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (22 bp):
ATTATACCTGGAGGTTTTGAAA
Done.