Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 32 of 160
Found at i:8012751 original size:43 final size:44
Alignment explanation
Indices: 8012671--8012759 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 44
8012661 GGTTTGAGGG
8012671 ATTATACCTGGAGGTTTTGAAAATTATGTCTGAAGGTCTTA-AA
1 ATTATACCTGGAGGTTTTGAAAATTATGTCTGAAGGTCTTATAA
* * * * *
8012714 ATTATACTTGGAGGTTTTGGAGATTTTGGT-TGGAGGTCTTATAA
1 ATTATACCTGGAGGTTTTGAAAATTAT-GTCTGAAGGTCTTATAA
8012758 AT
1 AT
8012760 AATTTTTATC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 33 0.85
44 6 0.15
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (44 bp):
ATTATACCTGGAGGTTTTGAAAATTATGTCTGAAGGTCTTATAA
Found at i:8013221 original size:18 final size:18
Alignment explanation
Indices: 8013198--8013360 Score: 94
Period size: 18 Copynumber: 9.5 Consensus size: 18
8013188 ATGCAAAAGA
8013198 TTCAAGATTCGTAAAGTT
1 TTCAAGATTCGTAAAGTT
* *
8013216 TTCAAGATTCATAAAATT
1 TTCAAGATTCGTAAAGTT
* ** *
8013234 TTTAAGATTCACAAAGGT
1 TTCAAGATTCGTAAAGTT
8013252 TTCAAGATTC-----G--
1 TTCAAGATTCGTAAAGTT
* * *
8013263 -CCAAGATTAGCAAAGGTT
1 TTCAAGATTCGTAAA-GTT
** *
8013281 TT-AAGATTCAAAAAATT
1 TTCAAGATTCGTAAAGTT
* * *
8013298 TTCAAAATTTGTAAAATT
1 TTCAAGATTCGTAAAGTT
*
8013316 TTCAAGATTCGTAAAGGT
1 TTCAAGATTCGTAAAGTT
8013334 TTCAAGATTCGTACAAGTT
1 TTCAAGATTCGTA-AAGTT
8013353 TT-AAGATT
1 TTCAAGATT
8013361 TGCAAAGGTC
Statistics
Matches: 111, Mismatches: 23, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
10 7 0.06
13 1 0.01
16 1 0.01
17 4 0.04
18 92 0.83
19 6 0.05
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (18 bp):
TTCAAGATTCGTAAAGTT
Found at i:8013439 original size:18 final size:18
Alignment explanation
Indices: 8013198--8013440 Score: 81
Period size: 18 Copynumber: 13.9 Consensus size: 18
8013188 ATGCAAAAGA
*
8013198 TTCAAGATTCGTAAAGTT
1 TTCAAGATTCGTAAAGGT
* **
8013216 TTCAAGATTCATAAAATT
1 TTCAAGATTCGTAAAGGT
* **
8013234 TTTAAGATTCACAAAGGT
1 TTCAAGATTCGTAAAGGT
8013252 TTCAAGATTC------G-
1 TTCAAGATTCGTAAAGGT
* * *
8013263 -CCAAGATTAGCAAAGGT
1 TTCAAGATTCGTAAAGGT
* ** **
8013280 TTTAAGATTCAAAAAATT
1 TTCAAGATTCGTAAAGGT
* * **
8013298 TTCAAAATTTGTAAAATT
1 TTCAAGATTCGTAAAGGT
8013316 TTCAAGATTCGTAAAGGT
1 TTCAAGATTCGTAAAGGT
8013334 TTCAAGATTCGTACAA-GT
1 TTCAAGATTCGTA-AAGGT
* * *
8013352 TTTAAGATTTGCAAAGGT
1 TTCAAGATTCGTAAAGGT
** ***
8013370 CCCAAGATTTAAAAAGGT
1 TTCAAGATTCGTAAAGGT
** * * **
8013388 CCCAAAATTCATAAAAAT
1 TTCAAGATTCGTAAAGGT
* **
8013406 TCCAAGATTCAAAAAGGT
1 TTCAAGATTCGTAAAGGT
*
8013424 TTCAAGATTTGTAAAGG
1 TTCAAGATTCGTAAAGG
8013441 CCTCAAATAA
Statistics
Matches: 168, Mismatches: 47, Indels: 20
0.71 0.20 0.09
Matches are distributed among these distances:
10 7 0.04
12 1 0.01
16 1 0.01
17 2 0.01
18 155 0.92
19 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (18 bp):
TTCAAGATTCGTAAAGGT
Found at i:8013572 original size:36 final size:36
Alignment explanation
Indices: 8013530--8013617 Score: 113
Period size: 36 Copynumber: 2.4 Consensus size: 36
8013520 TTCACCTTCA
* * * *
8013530 AGATTCACATTTAAGATTTACATTAAAAAATCTTGG
1 AGATTCACATTTAAAATTCACAATAAAAAATCTTAG
* *
8013566 ATATTCACATTTAAAATTCATAATAAAAAATCTTAG
1 AGATTCACATTTAAAATTCACAATAAAAAATCTTAG
*
8013602 AGATTCACATTGAAAA
1 AGATTCACATTTAAAA
8013618 ATCTTAGAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (36 bp):
AGATTCACATTTAAAATTCACAATAAAAAATCTTAG
Found at i:8013698 original size:21 final size:22
Alignment explanation
Indices: 8013664--8013704 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8013654 GTCTAAAGAT
* *
8013664 TAAAAAATTATAAAGATTCACA
1 TAAAAAAATATAAAAATTCACA
8013686 TAAAAAAAT-TAAAAATTCA
1 TAAAAAAATATAAAAATTCA
8013705 TATTGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAAAAAATATAAAAATTCACA
Found at i:8022417 original size:16 final size:16
Alignment explanation
Indices: 8022396--8022428 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8022386 ACATGTTAAG
8022396 TTTTTAATTCAATATT
1 TTTTTAATTCAATATT
8022412 TTTTTAATTCAATATT
1 TTTTTAATTCAATATT
8022428 T
1 T
8022429 ATTTCAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTAATTCAATATT
Found at i:8023443 original size:21 final size:21
Alignment explanation
Indices: 8023369--8023632 Score: 233
Period size: 21 Copynumber: 12.9 Consensus size: 21
8023359 TAAATAAAAA
8023369 TAAATATTAATTTAATAATAT
1 TAAATATTAATTTAATAATAT
**
8023390 T--ATATTGGTTTAATAATAT
1 TAAATATTAATTTAATAATAT
*
8023409 TAACTATT-ATTTAATAATAT
1 TAAATATTAATTTAATAATAT
* *
8023429 TCAATACTAATTTAATAATAT
1 TAAATATTAATTTAATAATAT
*
8023450 TAAATATTAA--T-ATAATAC
1 TAAATATTAATTTAATAATAT
*
8023468 TAAATAGTAATTTAAT-ATAT
1 TAAATATTAATTTAATAATAT
* *
8023488 TAAATTTTAAATTAA-AATAT
1 TAAATATTAATTTAATAATAT
* * *
8023508 TGAATATTGATTTATTAATAT
1 TAAATATTAATTTAATAATAT
*
8023529 TAAATATTGATTTAATAATAT
1 TAAATATTAATTTAATAATAT
* * *
8023550 TAAATATTAATATGATATTAT
1 TAAATATTAATTTAATAATAT
* *
8023571 TAAATATAAATTTAGTAATATT
1 TAAATATTAATTTAATAATA-T
*
8023593 TTAATATT-ATGTTAA-AGATATT
1 TAAATATTAAT-TTAATA-ATA-T
**
8023615 TAAATATTGTTTTAATAA
1 TAAATATTAATTTAATAA
8023633 AATTTTAATT
Statistics
Matches: 194, Mismatches: 36, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
18 15 0.08
19 18 0.09
20 46 0.24
21 86 0.44
22 27 0.14
23 2 0.01
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
TAAATATTAATTTAATAATAT
Found at i:8023531 original size:6 final size:7
Alignment explanation
Indices: 8023445--8023581 Score: 62
Period size: 7 Copynumber: 20.4 Consensus size: 7
8023435 CTAATTTAAT
8023445 AATATTA
1 AATATTA
8023452 AATATT-
1 AATATTA
8023458 AATA-T-
1 AATATTA
*
8023463 AATACTA
1 AATATTA
*
8023470 AATAGT-
1 AATATTA
8023476 AAT-TTA
1 AATATTA
8023482 ATATATTA
1 A-ATATTA
*
8023490 AATTTTA
1 AATATTA
*
8023497 AAT-TAA
1 AATATTA
*
8023503 AATATTG
1 AATATTA
8023510 AATATTGA
1 AATATT-A
**
8023518 TTTATT-
1 AATATTA
8023524 AATATTA
1 AATATTA
8023531 AATATT-
1 AATATTA
*
8023537 GAT-TTAA
1 AATATT-A
8023544 TAATATTA
1 -AATATTA
8023552 AATATT-
1 AATATTA
*
8023558 AATATGA
1 AATATTA
*
8023565 TATTATTA
1 -AATATTA
8023573 AATA-TA
1 AATATTA
8023579 AAT
1 AAT
8023582 TTAGTAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
5 8 0.08
6 30 0.30
7 43 0.43
8 16 0.16
9 2 0.02
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (7 bp):
AATATTA
Found at i:8023638 original size:11 final size:11
Alignment explanation
Indices: 8023581--8023664 Score: 66
Period size: 11 Copynumber: 7.8 Consensus size: 11
8023571 TAAATATAAA
*
8023581 TTTAGTAATAT
1 TTTAATAATAT
*
8023592 TTTAATATTAT
1 TTTAATAATAT
*
8023603 GTTAA-AGATAT
1 TTTAATA-ATAT
* * *
8023614 TTAAATATTGT
1 TTTAATAATAT
*
8023625 TTTAATAAAAT
1 TTTAATAATAT
8023636 TTTAAT--TAT
1 TTTAATAATAT
*
8023645 TTTAATATTAT
1 TTTAATAATAT
8023656 TTTAATAAT
1 TTTAATAAT
8023665 TTTAAAACGA
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
9 8 0.15
10 1 0.02
11 45 0.82
12 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
TTTAATAATAT
Found at i:8023649 original size:20 final size:20
Alignment explanation
Indices: 8023624--8023669 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8023614 TTAAATATTG
*
8023624 TTTTAATAAAATTTTAATTA
1 TTTTAATAAAATTTTAATAA
**
8023644 TTTTAATATTATTTTAATAA
1 TTTTAATAAAATTTTAATAA
8023664 TTTTAA
1 TTTTAA
8023670 AACGAAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAATAAAATTTTAATAA
Found at i:8023704 original size:11 final size:11
Alignment explanation
Indices: 8023690--8023800 Score: 54
Period size: 11 Copynumber: 10.3 Consensus size: 11
8023680 TAAGTTAACT
8023690 TTATTTTAATA
1 TTATTTTAATA
*
8023701 TTATTGTAATA
1 TTATTTTAATA
*
8023712 CT-TTTT--TA
1 TTATTTTAATA
8023720 TTATTTTAATA
1 TTATTTTAATA
*
8023731 TTAAATATTTAAGA
1 TT--AT-TTTAATA
*
8023745 ATATTTTAAT-
1 TTATTTTAATA
*
8023755 TATATTTTCATA
1 T-TATTTTAATA
* * *
8023767 --GTTTCACTA
1 TTATTTTAATA
*
8023776 ATATTTTAATA
1 TTATTTTAATA
*
8023787 TTATTGTAATA
1 TTATTTTAATA
8023798 TTA
1 TTA
8023801 AATAATAATT
Statistics
Matches: 72, Mismatches: 18, Indels: 20
0.65 0.16 0.18
Matches are distributed among these distances:
8 3 0.04
9 9 0.12
10 3 0.04
11 46 0.64
12 2 0.03
13 2 0.03
14 7 0.10
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:8023815 original size:11 final size:11
Alignment explanation
Indices: 8023801--8023826 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8023791 TGTAATATTA
8023801 AATAATAATTC
1 AATAATAATTC
8023812 AATAATAATTC
1 AATAATAATTC
8023823 AATA
1 AATA
8023827 TTTAGTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAATTC
Found at i:8023890 original size:17 final size:18
Alignment explanation
Indices: 8023774--8023910 Score: 71
Period size: 18 Copynumber: 7.2 Consensus size: 18
8023764 ATAGTTTCAC
* *
8023774 TAATATTTTAATATTATTG
1 TAATA-TTTAATAATATTT
* *
8023793 TAATATTAAATAATAATT
1 TAATATTTAATAATATTT
* *
8023811 CAATA-ATAATTCAATATTT
1 TAATATTTAA-T-AATATTT
* *
8023830 AGTATTATTTGGATAATATTT
1 --TAATATTT-AATAATATTT
* *
8023851 TAATATTATTTCATAACATTT
1 T-A-A-TATTTAATAATATTT
*
8023872 TAATA-TTAATGATATTT
1 TAATATTTAATAATATTT
*
8023889 TAATATTTGATAATATTT
1 TAATATTTAATAATATTT
8023907 TAAT
1 TAAT
8023911 GTTACTTGAA
Statistics
Matches: 88, Mismatches: 20, Indels: 21
0.68 0.16 0.16
Matches are distributed among these distances:
17 16 0.18
18 30 0.34
19 13 0.15
20 2 0.02
21 19 0.22
22 7 0.08
23 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (18 bp):
TAATATTTAATAATATTT
Found at i:8024212 original size:32 final size:34
Alignment explanation
Indices: 8024176--8024241 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 34
8024166 AATTGAAGAA
* *
8024176 TATTTTAATATTTAATATT-ATT-ATAATACTAT
1 TATTTAAATATTAAATATTAATTAATAATACTAT
8024208 TATTTAAATATTAAATATTAATTAAATAATACTA
1 TATTTAAATATTAAATATTAATT-AATAATACTA
8024242 GTCGTGCGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 17 0.59
33 3 0.10
35 9 0.31
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (34 bp):
TATTTAAATATTAAATATTAATTAATAATACTAT
Found at i:8026197 original size:13 final size:13
Alignment explanation
Indices: 8026176--8026205 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8026166 TATTTTCTAG
*
8026176 AAAATAAAAATAA
1 AAAAAAAAAATAA
8026189 AAAAAAAAAATAA
1 AAAAAAAAAATAA
8026202 AAAA
1 AAAA
8026206 TATTTTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (13 bp):
AAAAAAAAAATAA
Found at i:8026206 original size:7 final size:7
Alignment explanation
Indices: 8026176--8026207 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
8026166 TATTTTCTAG
8026176 AAAAT-A
1 AAAATAA
8026182 AAAATAA
1 AAAATAA
8026189 AAAA-AA
1 AAAATAA
8026195 AAAATAA
1 AAAATAA
8026202 AAAATA
1 AAAATA
8026208 TTTTCTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.46
7 13 0.54
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:8026233 original size:69 final size:69
Alignment explanation
Indices: 8026155--8026289 Score: 234
Period size: 69 Copynumber: 2.0 Consensus size: 69
8026145 CAAAAAATAG
8026155 AAAATAAAAACTATTTTCTAGAAAATAAAAATAAAAAAAAAAAATAAAAAATATTTTCTCAAACC
1 AAAATAAAAACTATTTTCTAGAAAATAAAAATAAAAAAAAAAAATAAAAAATATTTTCTCAAACC
8026220 ATAA
66 ATAA
* * * *
8026224 AAAATAAAAACTATTTTCTAGAAAATAAAAATTAAAACAAAAATTAAAAAATATTTTCTTAAACC
1 AAAATAAAAACTATTTTCTAGAAAATAAAAATAAAAAAAAAAAATAAAAAATATTTTCTCAAACC
8026289 A
66 A
8026290 AATGGAGGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.63, C:0.09, G:0.01, T:0.27
Consensus pattern (69 bp):
AAAATAAAAACTATTTTCTAGAAAATAAAAATAAAAAAAAAAAATAAAAAATATTTTCTCAAACC
ATAA
Found at i:8026254 original size:29 final size:29
Alignment explanation
Indices: 8026187--8026254 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
8026177 AAATAAAAAT
8026187 AAAAA-AAAAAAATAAAAAATATTTTCTC
1 AAAAATAAAAAAATAAAAAATATTTTCTC
* *
8026215 AAACCAT-AAAAAATAAAAACTATTTTCT-
1 AAA-AATAAAAAAATAAAAAATATTTTCTC
8026243 AGAAAATAAAAA
1 A-AAAATAAAAA
8026255 TTAAAACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
28 6 0.18
29 27 0.82
ACGTcount: A:0.66, C:0.09, G:0.01, T:0.24
Consensus pattern (29 bp):
AAAAATAAAAAAATAAAAAATATTTTCTC
Found at i:8026658 original size:22 final size:22
Alignment explanation
Indices: 8026618--8026660 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8026608 CCACAAATTT
* **
8026618 TATTTATTTAAATTTATATGAA
1 TATTAATTTAAATGGATATGAA
8026640 TATTAATTTAAATGGATATGA
1 TATTAATTTAAATGGATATGA
8026661 TTTTTATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
TATTAATTTAAATGGATATGAA
Found at i:8029411 original size:24 final size:24
Alignment explanation
Indices: 8029366--8029413 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8029356 ATATTGGATC
* *
8029366 ATTTATATGGATTCAAATTTGAAT
1 ATTTATATGGAGTCAAAATTGAAT
8029390 ATTTATATGG-GTCAAAAATTGAAT
1 ATTTATATGGAGTC-AAAATTGAAT
8029414 TTTCTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.42
Consensus pattern (24 bp):
ATTTATATGGAGTCAAAATTGAAT
Found at i:8032202 original size:24 final size:24
Alignment explanation
Indices: 8032170--8032236 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
8032160 AATAATATTT
** *
8032170 TATAAATATAAAATATTATTTTAA
1 TATAAATATAAAATAAAAATTTAA
8032194 TATAAATATAAAATTAAAAATTTAA
1 TATAAATATAAAA-TAAAAATTTAA
8032219 -ATAAATATTAAAATAAAA
1 TATAAATA-TAAAATAAAA
8032237 TAAAATAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 25 0.66
25 13 0.34
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
TATAAATATAAAATAAAAATTTAA
Found at i:8032240 original size:10 final size:12
Alignment explanation
Indices: 8032171--8032259 Score: 60
Period size: 12 Copynumber: 7.5 Consensus size: 12
8032161 ATAATATTTT
8032171 ATAAATA-TAAA
1 ATAAATATTAAA
* * *
8032182 ATATTATTTTAAT
1 ATA-AATATTAAA
8032195 ATAAATA-TAAA
1 ATAAATATTAAA
* *
8032206 ATTAAAAATTTAA
1 A-TAAATATTAAA
8032219 ATAAATATTAAA
1 ATAAATATTAAA
8032231 ATAAA-A-TAAA
1 ATAAATATTAAA
*
8032241 ATAATTAATTAAA
1 ATAAAT-ATTAAA
*
8032254 AAAAAT
1 ATAAAT
8032260 TATTTCGAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
10 8 0.14
11 8 0.14
12 24 0.41
13 18 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAATATTAAA
Found at i:8032258 original size:22 final size:22
Alignment explanation
Indices: 8032195--8032259 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
8032185 TTATTTTAAT
*
8032195 ATAAATA-TAAAATTAAAAATTTAA
1 ATAAATATTAAAA-T-AAAA-TAAA
8032219 ATAAATATTAAAATAAAATAAA
1 ATAAATATTAAAATAAAATAAA
*
8032241 ATAATTAATTAAAA-AAAAT
1 ATAAAT-ATTAAAATAAAAT
8032260 TATTTCGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
22 13 0.35
23 11 0.30
24 8 0.22
25 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
ATAAATATTAAAATAAAATAAA
Found at i:8034213 original size:246 final size:246
Alignment explanation
Indices: 8033765--8034259 Score: 859
Period size: 246 Copynumber: 2.0 Consensus size: 246
8033755 GCTGAGCTTT
* * *
8033765 GAGCTGTGACATAGGAGTCTAGTCCAAGCTTGAGTTTTGCAGTGTTTTGTCTCGGTTCAATTACA
1 GAGCTGCGACATAAGAGTCTAATCCAAGCTTGAGTTTTGCAGTGTTTTGTCTCGGTTCAATTACA
8033830 CCCCTAGTAGGAACTATAGAGCTGCAATATTGATAAACCAAAATCATTTATTTTTATGTAGTGGT
66 CCCCTAGTAGGAACTATAGAGCTGCAATATTGATAAACCAAAATCATTTATTTTTATGTAGTGGT
* *
8033895 AGATAAAATAAGAGTTGCAGTGATTATAATGTTGATTTATTTTTATGATTCTATATTGTTGATTG
131 AGAAAAAAAAAGAGTTGCAGTGATTATAATGTTGATTTATTTTTATGATTCTATATTGTTGATTG
*
8033960 AATTCAGAAATAATGGTGTCTGGTTTAATAAATGCAAATCCTGTTTTCTAC
196 AATTCAGAAATAATGGTGTCTGGTTTAATAAATGCAAATCCTGTTGTCTAC
* *
8034011 GAGCTGCGAGATAAGAGTCTAATCCAAGCTTGAGTTTTGCAGTGTTTTGTCTTGGTTCAATTACA
1 GAGCTGCGACATAAGAGTCTAATCCAAGCTTGAGTTTTGCAGTGTTTTGTCTCGGTTCAATTACA
*
8034076 CCCCTAGTAGGAACTATAGAGCTGCAATATTGATCAACCAAAGA-CATTTATTTTTATGTAGTGG
66 CCCCTAGTAGGAACTATAGAGCTGCAATATTGATAAACCAAA-ATCATTTATTTTTATGTAGTGG
*
8034140 CT-GAAAAAAAAAGAGTTGCAGTGATTATAATGTTGATTTATTTTTATGATTCTATTTTGTTGAT
130 -TAGAAAAAAAAAGAGTTGCAGTGATTATAATGTTGATTTATTTTTATGATTCTATATTGTTGAT
*
8034204 TGAATTCAGAAATTATGGTGTCTGGTTTAATAAATGCAAATCCTGTTGTCTAC
194 TGAATTCAGAAATAATGGTGTCTGGTTTAATAAATGCAAATCCTGTTGTCTAC
8034257 GAG
1 GAG
8034260 AAGAAAGAGC
Statistics
Matches: 236, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
246 234 0.99
247 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (246 bp):
GAGCTGCGACATAAGAGTCTAATCCAAGCTTGAGTTTTGCAGTGTTTTGTCTCGGTTCAATTACA
CCCCTAGTAGGAACTATAGAGCTGCAATATTGATAAACCAAAATCATTTATTTTTATGTAGTGGT
AGAAAAAAAAAGAGTTGCAGTGATTATAATGTTGATTTATTTTTATGATTCTATATTGTTGATTG
AATTCAGAAATAATGGTGTCTGGTTTAATAAATGCAAATCCTGTTGTCTAC
Found at i:8036641 original size:12 final size:12
Alignment explanation
Indices: 8036626--8036650 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8036616 TGTTTAATAT
8036626 TTTCTGGTCTAC
1 TTTCTGGTCTAC
8036638 TTTCTGGTCTAC
1 TTTCTGGTCTAC
8036650 T
1 T
8036651 GTCAAGAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.16, T:0.52
Consensus pattern (12 bp):
TTTCTGGTCTAC
Found at i:8039155 original size:22 final size:23
Alignment explanation
Indices: 8039106--8039162 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
8039096 ATAAAAATAA
8039106 TAAAAAATAAT-T-TAAATTTTT
1 TAAAAAATAATATATAAATTTTT
8039127 TATAAAAATAATATATAAA-TTTT
1 TA-AAAAATAATATATAAATTTTT
8039150 T-AAAAAT-ATATAT
1 TAAAAAATAATATAT
8039163 TTTATATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
20 6 0.18
21 8 0.24
22 9 0.27
23 6 0.18
24 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TAAAAAATAATATATAAATTTTT
Found at i:8039293 original size:84 final size:83
Alignment explanation
Indices: 8039139--8039317 Score: 245
Period size: 86 Copynumber: 2.1 Consensus size: 83
8039129 TAAAAATAAT
* * *
8039139 ATATAAATTTTTAAAAATATATATTTTATATTTAATATATCGATATAAATTATAATATGATAATT
1 ATATAAA--TTTAAAAATATATATTTTATATTTAACATA-CAACATAAATTATAATATGATAATT
8039204 TTTATATTTTATATATATATTTA
63 TTTATA-TTT-TATATATATTTA
*
8039227 ATATAAATTTAAAAATATATATTTTATATTTGACATA-AACATAAATTATAATAT-ATTAATTTT
1 ATATAAATTTAAAAATATATATTTTATATTTAACATACAACATAAATTATAATATGA-TAATTTT
8039290 TATATTTTATATATATTTA
65 TATATTTTATATATATTTA
8039309 ATATGAAAT
1 ATAT-AAAT
8039318 ATATATTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
82 16 0.19
83 8 0.09
84 26 0.31
86 28 0.33
88 7 0.08
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (83 bp):
ATATAAATTTAAAAATATATATTTTATATTTAACATACAACATAAATTATAATATGATAATTTTT
ATATTTTATATATATTTA
Found at i:8044829 original size:30 final size:30
Alignment explanation
Indices: 8044793--8044853 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8044783 GTGCAAATGC
8044793 ACCATTATTTTAAGACAATTAAATGCATTT
1 ACCATTATTTTAAGACAATTAAATGCATTT
*
8044823 ACCATTATTTTAAGACAATTAAATGCGTTT
1 ACCATTATTTTAAGACAATTAAATGCATTT
8044853 A
1 A
8044854 TCTTATCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (30 bp):
ACCATTATTTTAAGACAATTAAATGCATTT
Found at i:8050518 original size:14 final size:14
Alignment explanation
Indices: 8050499--8050528 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8050489 AAATACCATG
*
8050499 ATAAAATAAAATAA
1 ATAAAATAAAAAAA
8050513 ATAAAATAAAAAAA
1 ATAAAATAAAAAAA
8050527 AT
1 AT
8050529 TATGTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAATAAAAAAA
Found at i:8051670 original size:20 final size:21
Alignment explanation
Indices: 8051647--8051694 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8051637 CAACGAAAAA
*
8051647 GATAAAAAGAATA-GGAAAGT
1 GATAAAAAGAATATGAAAAGT
* *
8051667 GATAAAAATAATATTAAAAGT
1 GATAAAAAGAATATGAAAAGT
8051688 GATAAAA
1 GATAAAA
8051695 GTCATCTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (21 bp):
GATAAAAAGAATATGAAAAGT
Found at i:8051883 original size:15 final size:16
Alignment explanation
Indices: 8051847--8051889 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
8051837 ATTATAAAAA
8051847 ATTAATAAAAATATTT
1 ATTAATAAAAATATTT
* *
8051863 ATTAATAAAATTTTTT
1 ATTAATAAAAATATTT
8051879 A-TAATAAAAAT
1 ATTAATAAAAAT
8051890 TACATAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAATAAAAATATTT
Found at i:8052453 original size:17 final size:17
Alignment explanation
Indices: 8052431--8052464 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8052421 ACAAAAATCT
8052431 TAAAATGAAAATTTTAA
1 TAAAATGAAAATTTTAA
8052448 TAAAATGAAAATTTTAA
1 TAAAATGAAAATTTTAA
8052465 ATTTTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
TAAAATGAAAATTTTAA
Found at i:8054222 original size:30 final size:30
Alignment explanation
Indices: 8054188--8054246 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
8054178 TAACATGTTA
* *
8054188 AAAATTATTAAATATAATTTATATTTATTT
1 AAAATTATTAAATATAACTTACATTTATTT
*
8054218 AAAATTATTAAATATGACTTACATTTATT
1 AAAATTATTAAATATAACTTACATTTATT
8054247 CAAGTGAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (30 bp):
AAAATTATTAAATATAACTTACATTTATTT
Found at i:8055127 original size:16 final size:16
Alignment explanation
Indices: 8055102--8055132 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8055092 TATAATTAAA
*
8055102 AAAAATTAAAAAAAAT
1 AAAAACTAAAAAAAAT
8055118 AAAAACTAAAAAAAA
1 AAAAACTAAAAAAAA
8055133 AGACCCAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAACTAAAAAAAAT
Found at i:8062296 original size:20 final size:20
Alignment explanation
Indices: 8062273--8062313 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8062263 GTAAAAATAA
*
8062273 TTATTTATATATAAATT-TAT
1 TTATTTAT-TAAAAATTATAT
8062293 TTATTTATTAAAAATTATAT
1 TTATTTATTAAAAATTATAT
8062313 T
1 T
8062314 AAAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATTTATTAAAAATTATAT
Found at i:8074211 original size:14 final size:15
Alignment explanation
Indices: 8074183--8074215 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8074173 AACCTTCAGT
*
8074183 TTTTTTGGTAGTTTG
1 TTTTTTGCTAGTTTG
8074198 TTTTTTGCTA-TTTG
1 TTTTTTGCTAGTTTG
8074212 TTTT
1 TTTT
8074216 CAATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.06, C:0.03, G:0.18, T:0.73
Consensus pattern (15 bp):
TTTTTTGCTAGTTTG
Found at i:8076038 original size:196 final size:199
Alignment explanation
Indices: 8075749--8076124 Score: 546
Period size: 196 Copynumber: 1.9 Consensus size: 199
8075739 AGGATAATAA
*
8075749 TCTTCCTTATAATTTTATCAATTTCAGCTAGATACAAATCAAACATAATATAAAATTATTATCAT
1 TCTTCCTTATAATTTTATCAATTTCAGCTAGATACAAA-CAAACATAATATAAAATAATTATCAT
* *
8075814 ATTATCTTATTCATCATCGTACGTATCAAACATTACCTTAGGTATAGAAGCTTTTTTATAATTTT
65 ATTATCATATTCATCATCGTACGTATCAAACATTACCTTAGGTATAGAAACTTTTTTATAATTTT
8075879 TAGATAAAAGAATAAAAGCAAAAGAAAATTAGGAAAA-AAATAATGTGTGTTTTATGGCATCACC
130 TAGATAAAAGAA-AAAAGCAAAAGAAAATTAGGAAAATAAATAATGTGTGTTTTATGGCATCACC
8075943 ACCAAC
194 ACCAAC
** * *
8075949 TCTT-CTTATAATTTTATCTCTTTCAGTTAGATA-AAA-AAATATAATATAAAATAATTATCATA
1 TCTTCCTTATAATTTTATCAATTTCAGCTAGATACAAACAAACATAATATAAAATAATTATCATA
** * * **
8076011 TTATCATA-TCTATCATTTTATGTATCAAATATTATTTTAGGTATAGAAACTTTTTTATAATTTT
66 TTATCATATTC-ATCATCGTACGTATCAAACATTACCTTAGGTATAGAAACTTTTTTATAATTTT
** *
8076075 TAGATAAAAGAAAAAAGTGAAAGAAAATTAGGAAAATAAATAATTTGTGT
130 TAGATAAAAGAAAAAAGCAAAAGAAAATTAGGAAAATAAATAATGTGTGT
8076125 GTGTTTTATG
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
195 24 0.15
196 101 0.64
198 3 0.02
199 26 0.16
200 4 0.03
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (199 bp):
TCTTCCTTATAATTTTATCAATTTCAGCTAGATACAAACAAACATAATATAAAATAATTATCATA
TTATCATATTCATCATCGTACGTATCAAACATTACCTTAGGTATAGAAACTTTTTTATAATTTTT
AGATAAAAGAAAAAAGCAAAAGAAAATTAGGAAAATAAATAATGTGTGTTTTATGGCATCACCAC
CAAC
Found at i:8076319 original size:21 final size:22
Alignment explanation
Indices: 8076288--8076330 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
8076278 AATTAGAAAC
8076288 ATTTATTTTAATAA-ATTAATTA
1 ATTTATTTTAATAATA-TAATTA
8076310 ATTT-TTTTAATAATATAATTA
1 ATTTATTTTAATAATATAATTA
8076331 TATGATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTATTTTAATAATATAATTA
Found at i:8091196 original size:17 final size:16
Alignment explanation
Indices: 8091174--8091217 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
8091164 GTCAAACCCT
8091174 AAAACCTTCAAAATCAC
1 AAAACCTT-AAAATCAC
* * *
8091191 AAAACCCTGAAATCTC
1 AAAACCTTAAAATCAC
8091207 AAAACCTTAAA
1 AAAACCTTAAA
8091218 CCCTTAAATC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.18
Consensus pattern (16 bp):
AAAACCTTAAAATCAC
Found at i:8091221 original size:23 final size:25
Alignment explanation
Indices: 8091192--8091264 Score: 82
Period size: 23 Copynumber: 3.1 Consensus size: 25
8091182 CAAAATCACA
*
8091192 AAACCCTGAAATC-TCAAAACCTT-
1 AAACCCTGAAATCATAAAAACCTTG
*
8091215 AAACCCTTAAATCATAAAAACCTTG
1 AAACCCTGAAATCATAAAAACCTTG
* *
8091240 AAACCCT-AAACCCT-AAAACCTTG
1 AAACCCTGAAATCATAAAAACCTTG
8091263 AA
1 AA
8091265 GTTTTCTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
23 23 0.52
24 14 0.32
25 7 0.16
ACGTcount: A:0.47, C:0.29, G:0.04, T:0.21
Consensus pattern (25 bp):
AAACCCTGAAATCATAAAAACCTTG
Found at i:8091259 original size:40 final size:40
Alignment explanation
Indices: 8091165--8091259 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 40
8091155 TAAATTTTTG
* *
8091165 TCAAACCCTAAAA-CCTTCAAAATCACAAAACCCTGAAATC
1 TCAAACCCTAAAACCCTT-AAAATCAAAAAACCCTGAAACC
* * *
8091205 TCAAAACCTTAAACCCTT-AAATCATAAAAACCTTGAAACC
1 TCAAACCCTAAAACCCTTAAAATCA-AAAAACCCTGAAACC
8091245 -CTAAACCCTAAAACC
1 TC-AAACCCTAAAACC
8091260 TTGAAGTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
39 7 0.16
40 34 0.76
41 4 0.09
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (40 bp):
TCAAACCCTAAAACCCTTAAAATCAAAAAACCCTGAAACC
Found at i:8091514 original size:18 final size:20
Alignment explanation
Indices: 8091491--8091535 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
8091481 TCCACCAATA
*
8091491 CCCTAAATTTAAC-C-CAAC
1 CCCTAAATTCAACTCGCAAC
8091509 CCCTAAATTCAACTCGCAAC
1 CCCTAAATTCAACTCGCAAC
8091529 CCC-AAAT
1 CCCTAAAT
8091536 CATTACCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 12 0.50
19 5 0.21
20 7 0.29
ACGTcount: A:0.38, C:0.40, G:0.02, T:0.20
Consensus pattern (20 bp):
CCCTAAATTCAACTCGCAAC
Found at i:8093510 original size:17 final size:17
Alignment explanation
Indices: 8093488--8093526 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8093478 ATTTTACTAG
8093488 TTTTTATAAAAACAAAA
1 TTTTTATAAAAACAAAA
* * *
8093505 TTTTTATTATATCAAAA
1 TTTTTATAAAAACAAAA
8093522 TTTTT
1 TTTTT
8093527 TTATAAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTATAAAAACAAAA
Found at i:8093525 original size:16 final size:17
Alignment explanation
Indices: 8093500--8093531 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8093490 TTTATAAAAA
8093500 CAAAATTTTTATTATAT
1 CAAAATTTTTATTATAT
8093517 CAAAATTTTT-TTATA
1 CAAAATTTTTATTATA
8093532 AATACTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
CAAAATTTTTATTATAT
Found at i:8094548 original size:11 final size:11
Alignment explanation
Indices: 8094511--8094549 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
8094501 TGACAATGTG
*
8094511 TTTTTTTATCT
1 TTTTTTTATTT
*
8094522 ATTTTTTATGTT
1 TTTTTTTAT-TT
8094534 TTTTTTTATTT
1 TTTTTTTATTT
8094545 TTTTT
1 TTTTT
8094550 ACAGGGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.10, C:0.03, G:0.03, T:0.85
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:8094548 original size:21 final size:23
Alignment explanation
Indices: 8094506--8094550 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8094496 GAATCTGACA
8094506 ATGTGTTTTTTTATCTATTTTTT
1 ATGTGTTTTTTTATCTATTTTTT
*
8094529 ATGTTTTTTTTTAT-T-TTTTTT
1 ATGTGTTTTTTTATCTATTTTTT
8094550 A
1 A
8094551 CAGGGTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 1 0.05
23 13 0.62
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (23 bp):
ATGTGTTTTTTTATCTATTTTTT
Found at i:8095051 original size:44 final size:44
Alignment explanation
Indices: 8094966--8095051 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
8094956 TTTTTTTTAA
* *
8094966 AAAATTTAAAAGGGCTCATTTTAATAGAGGCTCAACGACTTTTG
1 AAAATTTAAAAGGGCTCATTATAATAGAGGCTCAACAACTTTTG
* * * *
8095010 AAAATTTAAAATGGCTTA-TATAAGTAGATGCTCAATAACTTT
1 AAAATTTAAAAGGGCTCATTATAA-TAGAGGCTCAACAACTTT
8095052 AAAGAATCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 4 0.11
44 31 0.89
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (44 bp):
AAAATTTAAAAGGGCTCATTATAATAGAGGCTCAACAACTTTTG
Found at i:8095210 original size:49 final size:49
Alignment explanation
Indices: 8095030--8095456 Score: 365
Period size: 49 Copynumber: 8.7 Consensus size: 49
8095020 ATGGCTTATA
* * * * *
8095030 TAAGTAGATGCTCAATAACTTTAAAGAA-TCATCTTGAAAAAAGGGCTCATC
1 TAAGCAGAGGCTCAACAACTTTAAA-AATTCATCTTGGAAAAA--GCTCCTC
* * * *
8095081 TAAGCAAAGGCTTAACAA-TTTAAAAAAAAAAATCCTCTTGAGAAAAAGCTCCTC
1 TAAGCAGAGGCTCAACAACTTT-----AAAAATTCATCTTG-GAAAAAGCTCCTC
* * * * *
8095135 TAAGCAGAGACTCAACGACTTTAAAAATTCATTTTGACAAAAAGCTCTTC
1 TAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTG-GAAAAAGCTCCTC
* *
8095185 TAAGCAGAGGCTCCACAA-TTTAAAAAAAATCATCTTGGAAAAAGCTCCTC
1 TAAGCAGAGGCTCAACAACTTT--AAAAATTCATCTTGGAAAAAGCTCCTC
* *
8095235 TAAGTAGAGGCTCAACAACTTTAAAAATTCATATTGG-AAAAGCTCCTC
1 TAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTGGAAAAAGCTCCTC
* * * *
8095283 TCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGGAAAAAGCTCTTT
1 TAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTGGAAAAAGCTCCTC
*
8095332 TAAGCAGAGGC-CTAACAACTTTAAAAATTCATCTT-G---AA--TCCTT
1 TAAGCAGAGGCTC-AACAACTTTAAAAATTCATCTTGGAAAAAGCTCCTC
* * * * *
8095375 TTAGCAGAGGTTCAACAATTTTAAAAATTTATCTTGAAAAAAGCTCC-C
1 TAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTGGAAAAAGCTCCTC
**
8095423 TTAAATAGAGGCTCAACAACTTTAAAAATCTCAT
1 -TAAGCAGAGGCTCAACAACTTTAAAAAT-TCAT
8095457 ATGTTCTTGA
Statistics
Matches: 305, Mismatches: 49, Indels: 45
0.76 0.12 0.11
Matches are distributed among these distances:
43 33 0.11
44 1 0.00
45 2 0.01
47 2 0.01
48 46 0.15
49 82 0.27
50 71 0.23
51 28 0.09
54 22 0.07
55 13 0.04
56 5 0.02
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (49 bp):
TAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTGGAAAAAGCTCCTC
Found at i:8095420 original size:92 final size:95
Alignment explanation
Indices: 8095116--8095458 Score: 361
Period size: 92 Copynumber: 3.5 Consensus size: 95
8095106 AAAAAAATCC
* * * * * *
8095116 TCTTGAGAAAAAGCTCCTCTAAGCAGAGACTCAACGACTTTAAAAATTCATTTTGACAAAAAGCT
1 TCTTG-GAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAAATTCATATTG---GAAA-CT
* * * * * *
8095181 CTTCTAAGCAGAGGCTCCACAATTTAAAAAAAATCA
61 CCTCTCAGCAGAGGCTCAACAATTT-TAAAAATTTA
*
8095217 TCTTGGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATTCATATTGGAAAAGCTCCT
1 TCTTGGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAAATTCATATTGG-AAA-CTCCT
*
8095282 CTCAGCAGAGGCTCAACAACTTTAAAAATTTA
64 CTCAGCAGAGGCTCAACAATTTTAAAAATTTA
* * * *
8095314 TCTTGGAAAAAGCTCTTTTAAGCAGAGGC-CTAACAACTTTAAAAATTCATCTT-G-AA-TCCTT
1 TCTTGGAAAAAGCTCCTTTAAGTAGAGGCTC-AACAACTTTAAAAATTCATATTGGAAACTCCTC
* *
8095375 TTAGCAGAGGTTCAACAATTTTAAAAATTTA
65 TCAGCAGAGGCTCAACAATTTTAAAAATTTA
* * *
8095406 TCTTGAAAAAAGCTCCCTTAAATAGAGGCTCAACAACTTTAAAAATCTCATAT
1 TCTTGGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAAAT-TCATAT
8095459 GTTCTTGAAA
Statistics
Matches: 212, Mismatches: 26, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
92 71 0.33
93 6 0.03
94 2 0.01
96 2 0.01
97 54 0.25
98 27 0.13
100 45 0.21
101 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (95 bp):
TCTTGGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAAATTCATATTGGAAACTCCTCT
CAGCAGAGGCTCAACAATTTTAAAAATTTA
Found at i:8097710 original size:23 final size:23
Alignment explanation
Indices: 8097684--8097737 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
8097674 TTATTATTAT
*
8097684 TAATAACAATTAAATATTTAT-CA
1 TAATAA-AATTAAACATTTATGCA
*
8097707 TAATAAATTTAAACATTTATGCA
1 TAATAAAATTAAACATTTATGCA
*
8097730 TAAAAAAA
1 TAATAAAA
8097738 AACTTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (23 bp):
TAATAAAATTAAACATTTATGCA
Found at i:8097724 original size:22 final size:24
Alignment explanation
Indices: 8097684--8097732 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
8097674 TTATTATTAT
*
8097684 TAATAACAATTAAATATTTAT-CA
1 TAATAACAATTAAACATTTATGCA
*
8097707 TAATAA-ATTTAAACATTTATGCA
1 TAATAACAATTAAACATTTATGCA
8097730 TAA
1 TAA
8097733 AAAAAAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (24 bp):
TAATAACAATTAAACATTTATGCA
Found at i:8098776 original size:16 final size:16
Alignment explanation
Indices: 8098755--8098810 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
8098745 CCATCCTTAA
*
8098755 TTTTTTTGTCTTTTAT
1 TTTTTTTGTTTTTTAT
8098771 TTTTTTTGGGTATTTTTCAT
1 TTTTTTT--GT-TTTTT-AT
8098791 TTTTTTTGTTTTTGTAT
1 TTTTTTTGTTTTT-TAT
8098808 TTT
1 TTT
8098811 GTATTATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
16 7 0.21
17 9 0.26
18 5 0.15
19 4 0.12
20 9 0.26
ACGTcount: A:0.07, C:0.04, G:0.11, T:0.79
Consensus pattern (16 bp):
TTTTTTTGTTTTTTAT
Found at i:8098819 original size:34 final size:34
Alignment explanation
Indices: 8098781--8098852 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
8098771 TTTTTTTGGG
* * *
8098781 TATTTTTCAT-TTTTTTTGTTTTTGTATTTTGTAT
1 TATTTTTCATATTTTTTT-ATTTCGTATTTTGTAA
**
8098815 TATTTTTGGTATTTTTTTATTTCGTATTTTGTAA
1 TATTTTTCATATTTTTTTATTTCGTATTTTGTAA
8098849 TATT
1 TATT
8098853 ATTATTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 25 0.78
35 7 0.22
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.72
Consensus pattern (34 bp):
TATTTTTCATATTTTTTTATTTCGTATTTTGTAA
Found at i:8098820 original size:24 final size:24
Alignment explanation
Indices: 8098767--8098822 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
8098757 TTTTTGTCTT
8098767 TTATTTTT-TTTGGGTATTTTTCA
1 TTATTTTTGTTTGGGTATTTTTCA
* **
8098790 TTTTTTTTGTTTTTGTATTTTGT-A
1 TTATTTTTGTTTGGGTATTTT-TCA
8098814 TTATTTTTG
1 TTATTTTTG
8098823 GTATTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 7 0.26
24 19 0.70
25 1 0.04
ACGTcount: A:0.11, C:0.02, G:0.12, T:0.75
Consensus pattern (24 bp):
TTATTTTTGTTTGGGTATTTTTCA
Found at i:8099398 original size:35 final size:36
Alignment explanation
Indices: 8099359--8099532 Score: 124
Period size: 35 Copynumber: 4.9 Consensus size: 36
8099349 TGGTCGAGAT
* *
8099359 TAAACCACGAGCCAAAGATTAAAGATGACTGGA-AC
1 TAAACCACGAGTCAAAGATTAAAGATGACTGAAGAC
* * * * * *
8099394 TAAACCGCAAGTCAGAGAATGAA-ATGACT-AAGAT
1 TAAACCACGAGTCAAAGATTAAAGATGACTGAAGAC
*
8099428 TAAACCACGAGTCAAAGATTAAAGATGACTG-AGAT
1 TAAACCACGAGTCAAAGATTAAAGATGACTGAAGAC
* * * * * * * *
8099463 TGAGCCACAAGTCAGAGAATTAATGAAATGACAG-GGAT
1 TAAACCACGAGTCAAAG-ATTAA--AGATGACTGAAGAC
*
8099501 TAAACCATGAGTCAAAGATTAAAGATGACTGA
1 TAAACCACGAGTCAAAGATTAAAGATGACTGA
8099533 GATTGAACCG
Statistics
Matches: 105, Mismatches: 27, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
33 1 0.01
34 25 0.24
35 47 0.45
36 5 0.05
37 5 0.05
38 22 0.21
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.18
Consensus pattern (36 bp):
TAAACCACGAGTCAAAGATTAAAGATGACTGAAGAC
Found at i:8099514 original size:38 final size:37
Alignment explanation
Indices: 8099471--8100128 Score: 316
Period size: 35 Copynumber: 18.4 Consensus size: 37
8099461 ATTGAGCCAC
* *
8099471 AAGTCAGAGAATTAATGAAATGACAGGGATTAAACCAT
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* * * *
8099509 GAGTCAAAG-ATTAA--AGATGACTGAGATTGAACCGT
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* * *
8099544 AAGTCAAAAAAGTAATGAAATGATCGGGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * *
8099582 GAGTCAAAG-ATTAA--AGATGACTGGGATTGAACCGT
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* * *
8099617 AAGTTAAAAAATTAATGAAATGATCGGGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * * *
8099655 GAGTCAAAG-ATTAA--AGATGACTGAGATTGAGCCGT
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* *
8099690 AAGTC--AG-A-GAATGAAATGATCGGGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * * *
8099724 GAGTCAAAG-ATTAA--AGATGATTGGGATTGAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* *
8099759 AAGTC--AG-A-GAATGAAATGATCGGGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * * *
8099793 GAGTCAAAG-ATTAA--AGATGACTGGGATTGAATCGC
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* * *
8099828 AAGTCAAAAAATTAATGAAATGATCGAGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * * * *
8099866 GAGTTAAAG-ATTAA--AGATGACTTGGATTGAACCGC
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* *
8099901 AAGTCAAAAAATTAATGAAATGATCGGGATTAAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * *
8099939 GAGTCAAAG-ATTAA--AGATGACTGGGATTGAACCGC
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
* *
8099974 AAGTCAAAAAATTAATGAAATGATCGGGATT-AACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * * * *
8100011 GAGCCAAAG-ATT-A-GAGATGATTGGGATTGAACCGC
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
8100046 AAGTC-AA-AA--AATGAAATGATCGGGATTAAACCGT
1 AAGTCAAAGAATTAATGAAATGA-CGGGATTAAACCGT
* * * *
8100080 GAGTCAAAG-ATTAA--AGATGACTGGGATTGAACCGC
1 AAGTCAAAGAATTAATGAAATGAC-GGGATTAAACCGT
*
8100115 AAGTCAAAAAATTA
1 AAGTCAAAGAATTA
8100129 TATAAGACTG
Statistics
Matches: 475, Mismatches: 99, Indels: 94
0.71 0.15 0.14
Matches are distributed among these distances:
32 4 0.01
33 7 0.01
34 84 0.18
35 190 0.40
36 37 0.08
37 42 0.09
38 106 0.22
39 5 0.01
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.21
Consensus pattern (37 bp):
AAGTCAAAGAATTAATGAAATGACGGGATTAAACCGT
Found at i:8099519 original size:73 final size:73
Alignment explanation
Indices: 8099276--8100128 Score: 1114
Period size: 73 Copynumber: 11.9 Consensus size: 73
8099266 AGAATAAGAA
* * * * * ***
8099276 GATCAGGATTAAACCACGAATCAAATATTAATGATGACTGGGATTGAACCGCAAGTCGAGGGAAT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTC-AAAAAAT
8099341 TAATGAAAT
65 TAATGAAAT
* * * * * * * * *
8099350 GGTCGAGATTAAACCACGAGCCAAAGATTAAAGATGACTGGAACTAAACCGCAAGTC---AGA-G
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099411 AATGAAAT
66 AATGAAAT
** * * * * * *
8099419 GA-CTAAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAGCCACAAGTCAGAGAAT
1 GATC-GGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAAT
8099483 TAATGAAAT
65 TAATGAAAT
** * * *
8099492 GA-CAGGGATTAAACCATGAGTCAAAGATTAAAGATGACTGAGATTGAACCGTAAGTCAAAAAAG
1 GATC-GGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAAT
8099556 TAATGAAAT
65 TAATGAAAT
* *
8099565 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGTAAGTTAAAAAATT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099630 AATGAAAT
66 AATGAAAT
* * * * *
8099638 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGAGATTGAGCCGTAAGTC---AGA-G
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099699 AATGAAAT
66 AATGAAAT
* * *
8099707 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGATTGGGATTGAACCGCAAGTC---AGA-G
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099768 AATGAAAT
66 AATGAAAT
*
8099776 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAATCGCAAGTCAAAAAATT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099841 AATGAAAT
66 AATGAAAT
* * *
8099849 GATCGAGATTAAACCGCGAGTTAAAGATTAAAGATGACTTGGATTGAACCGCAAGTCAAAAAATT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099914 AATGAAAT
66 AATGAAAT
8099922 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8099987 AATGAAAT
66 AATGAAAT
* * *
8099995 GATCGGGATT-AACCGCGAGCCAAAGATTAGAGATGATTGGGATTGAACCGCAAGTC--AAAA--
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8100055 AATGAAAT
66 AATGAAAT
*
8100063 GATCGGGATTAAACCGTGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
8100128 A
66 A
8100129 TATAAGACTG
Statistics
Matches: 697, Mismatches: 67, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
68 19 0.03
69 224 0.32
70 7 0.01
71 4 0.01
72 46 0.07
73 349 0.50
74 48 0.07
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (73 bp):
GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAAAAAATT
AATGAAAT
Found at i:8099896 original size:357 final size:357
Alignment explanation
Indices: 8099276--8100120 Score: 1239
Period size: 357 Copynumber: 2.4 Consensus size: 357
8099266 AGAATAAGAA
* * * * *
8099276 GATCAGGATTAAACCACGAATCAAATATTAATGATGACTGGGATTGAACCGCAAGTCGAGGGAAT
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTC-A--GAA-
* * * * * * *
8099341 TAATGAAATGGTCGAGATTAAACCACGAGCCAAAGATTAAAGATGACTGGAACTAAACCGCAAGT
62 -AATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGT
*
8099406 CAGAGAATGAAATGACTAAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAGCCAC
126 CAGAGAATGAAATGACTAAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAACCAC
* * * *
8099471 AAGTCAGAGAATTAATGAAATGACAGGGATTAAACCATGAGTCAAAGATTAAAGATGACTGAGAT
191 AAGTCAAAAAATTAATGAAATGACAGAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGAT
*
8099536 TGAACCGTAAGTCAAAAAAGTAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATG
256 TGAACCGCAAGTCAAAAAAGTAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATG
* *
8099601 ACTGGGATTGAACCGTAAGTTAAAAAATTAATGAAAT
321 ACTGGGATTGAACCGCAAGTCAAAAAATTAATGAAAT
* * * *
8099638 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGAGATTGAGCCGTAAGTCAGAGAATG
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGAAAATG
*
8099703 AAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGATTGGGATTGAACCGCAAGTCAGAG
66 AAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGAG
** * * * *
8099768 AATGAAATGA-TCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAATCGCAAGT
131 AATGAAATGACT-AAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAACCACAAGT
* *
8099832 CAAAAAATTAATGAAATGATC-GAGATTAAACCGCGAGTTAAAGATTAAAGATGACTTG-GATTG
195 CAAAAAATTAATGAAATGA-CAGAGATTAAACCACGAGTCAAAGATTAAAGATGAC-TGAGATTG
*
8099895 AACCGCAAGTCAAAAAATTAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGAC
258 AACCGCAAGTCAAAAAAGTAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGAC
8099960 TGGGATTGAACCGCAAGTCAAAAAATTAATGAAAT
323 TGGGATTGAACCGCAAGTCAAAAAATTAATGAAAT
* * * *
8099995 GATCGGGATT-AACCGCGAGCCAAAGATTAGAGATGATTGGGATTGAACCGCAAGTCAAAAAATG
1 GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGAAAATG
*
8100059 AAATGATCGGGATTAAACCGTGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCA
66 AAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCA
8100121 AAAAATTATA
Statistics
Matches: 436, Mismatches: 44, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
356 107 0.25
357 274 0.63
358 3 0.01
359 2 0.00
361 1 0.00
362 49 0.11
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (357 bp):
GATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGAAAATG
AAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGAG
AATGAAATGACTAAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAACCACAAGTC
AAAAAATTAATGAAATGACAGAGATTAAACCACGAGTCAAAGATTAAAGATGACTGAGATTGAAC
CGCAAGTCAAAAAAGTAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAAGATGACTGG
GATTGAACCGCAAGTCAAAAAATTAATGAAAT
Found at i:8101162 original size:13 final size:13
Alignment explanation
Indices: 8101144--8101187 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
8101134 TCTTTTCTCA
*
8101144 TTTTTTTTCTTTT
1 TTTTTTTTATTTT
8101157 TTTTTTTTATTTT
1 TTTTTTTTATTTT
*
8101170 TTGATTTTTGATTTT
1 TT--TTTTTTATTTT
8101185 TTT
1 TTT
8101188 GCTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 15 0.56
15 12 0.44
ACGTcount: A:0.07, C:0.02, G:0.05, T:0.86
Consensus pattern (13 bp):
TTTTTTTTATTTT
Found at i:8112934 original size:23 final size:23
Alignment explanation
Indices: 8112908--8112961 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
8112898 TTATTATTAT
*
8112908 TAATAACAATTAAATATTTAT-CA
1 TAATAA-AATTAAACATTTATGCA
*
8112931 TAATAAATTTAAACATTTATGCA
1 TAATAAAATTAAACATTTATGCA
*
8112954 TAAAAAAA
1 TAATAAAA
8112962 ACTTAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (23 bp):
TAATAAAATTAAACATTTATGCA
Found at i:8112948 original size:22 final size:24
Alignment explanation
Indices: 8112908--8112956 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
8112898 TTATTATTAT
*
8112908 TAATAACAATTAAATATTTAT-CA
1 TAATAACAATTAAACATTTATGCA
*
8112931 TAATAA-ATTTAAACATTTATGCA
1 TAATAACAATTAAACATTTATGCA
8112954 TAA
1 TAA
8112957 AAAAAACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (24 bp):
TAATAACAATTAAACATTTATGCA
Found at i:8114030 original size:24 final size:25
Alignment explanation
Indices: 8113976--8114032 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 25
8113966 TTTTGTCTTC
8113976 TATTTTT-TTTTTGGGTATTTTTCAT
1 TATTTTTGTTTTT-GGTATTTTTCAT
*
8114001 TTTTTTTGTTTTT-GTATTTTGT-AT
1 TATTTTTGTTTTTGGTATTTT-TCAT
8114025 TATTTTTG
1 TATTTTTG
8114033 GTATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 16 0.57
25 7 0.25
26 5 0.18
ACGTcount: A:0.11, C:0.02, G:0.12, T:0.75
Consensus pattern (25 bp):
TATTTTTGTTTTTGGTATTTTTCAT
Found at i:8126137 original size:10 final size:10
Alignment explanation
Indices: 8126124--8126158 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
8126114 AAAAACTGCC
8126124 AAAAAGAAGA
1 AAAAAGAAGA
*
8126134 AAAAAGAAAA
1 AAAAAGAAGA
8126144 AAAAAGAAGA
1 AAAAAGAAGA
8126154 AAAAA
1 AAAAA
8126159 ATTATAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAGAAGA
Found at i:8128793 original size:17 final size:18
Alignment explanation
Indices: 8128771--8128805 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8128761 ATTTACTTTT
8128771 TTTAAAAATTAT-TAATA
1 TTTAAAAATTATATAATA
*
8128788 TTTAAAAGTTATATAATA
1 TTTAAAAATTATATAATA
8128806 ATATTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTAAAAATTATATAATA
Found at i:8129359 original size:17 final size:18
Alignment explanation
Indices: 8129325--8129378 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 18
8129315 TTTTACTTTA
*
8129325 TTATATATATACATATTTT
1 TTAT-TATATATATATTTT
8129344 TTATCT-TAT-TATATTTT
1 TTAT-TATATATATATTTT
8129361 TTATTATATATATATTTT
1 TTATTATATATATATTTT
8129379 AAAAACATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 1 0.03
17 14 0.45
18 11 0.35
19 5 0.16
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTATATATATATTTT
Found at i:8130658 original size:2 final size:2
Alignment explanation
Indices: 8130651--8130692 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8130641 GCTTAGCAGA
8130651 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8130693 GCTTCCGACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8130952 original size:20 final size:20
Alignment explanation
Indices: 8130929--8130973 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8130919 AGAAACAGCC
*
8130929 ATGCAAATGTAGAAAAACAT
1 ATGCAAATGCAGAAAAACAT
** *
8130949 ATGCTGATGCAGAAAAATAT
1 ATGCAAATGCAGAAAAACAT
8130969 ATGCA
1 ATGCA
8130974 GAAACAAGGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (20 bp):
ATGCAAATGCAGAAAAACAT
Found at i:8131006 original size:45 final size:45
Alignment explanation
Indices: 8130955--8131053 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
8130945 ACATATGCTG
* *
8130955 ATGCAGAAAAATATATGCAGAAACAAGGAACAGCCATGCAGATGC
1 ATGCAGAAAAATATATGCAGAAACAAGGAAAAACCATGCAGATGC
*
8131000 ATGCAGAAAAATATATGCAGAAACCAGGAAAAACCATGCAGATGC
1 ATGCAGAAAAATATATGCAGAAACAAGGAAAAACCATGCAGATGC
8131045 ATGCAGAAA
1 ATGCAGAAA
8131054 CAAGGAACAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.48, C:0.17, G:0.21, T:0.13
Consensus pattern (45 bp):
ATGCAGAAAAATATATGCAGAAACAAGGAAAAACCATGCAGATGC
Found at i:8131052 original size:31 final size:31
Alignment explanation
Indices: 8131014--8131076 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
8131004 AGAAAAATAT
*
8131014 ATGCAGAAACCAGGAAAAACCATGCAGATGC
1 ATGCAGAAACAAGGAAAAACCATGCAGATGC
* * *
8131045 ATGCAGAAACAAGGAACAGCCATGCGGATGC
1 ATGCAGAAACAAGGAAAAACCATGCAGATGC
8131076 A
1 A
8131077 GAAAAATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (31 bp):
ATGCAGAAACAAGGAAAAACCATGCAGATGC
Found at i:8131091 original size:72 final size:75
Alignment explanation
Indices: 8130969--8131112 Score: 231
Period size: 72 Copynumber: 1.9 Consensus size: 75
8130959 AGAAAAATAT
*
8130969 ATGCAGAAACAAGGAACAGCCATGCAGATGCATGCAGAAAAATATATGCAGAAACCAGGAAAAAC
1 ATGCAGAAACAAGGAACAGCCATGCAGA-GCATGCAGAAAAATATATGCAGAAACAAGGAAAAAC
8131034 CATGCAGATGC
65 CATGCAGATGC
* *
8131045 ATGCAGAAACAAGGAACAGCCATGC-G-G-ATGCAGAAAAATATATGCAGAAACAAGGAACATCC
1 ATGCAGAAACAAGGAACAGCCATGCAGAGCATGCAGAAAAATATATGCAGAAACAAGGAAAAACC
8131107 ATGCAG
66 ATGCAG
8131113 GTGTAGAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 38 0.58
73 1 0.02
75 1 0.02
76 25 0.38
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (75 bp):
ATGCAGAAACAAGGAACAGCCATGCAGAGCATGCAGAAAAATATATGCAGAAACAAGGAAAAACC
ATGCAGATGC
Found at i:8131095 original size:117 final size:113
Alignment explanation
Indices: 8130949--8131156 Score: 308
Period size: 117 Copynumber: 1.8 Consensus size: 113
8130939 AGAAAAACAT
* *
8130949 ATGCTGATGCAGAAAAATATATGCAGAAACAAGGAACAGCCATGCAGATGCATGCAGAAAAATAT
1 ATGCGGATGCAGAAAAATATATGCAGAAACAAGGAACAGCCATGCAG--G--TGCAGAAAAACAT
* *
8131014 ATGCAGAAACCAGGAAAAACCATGCAGATGCATGCAGAAACAAGGAACAGCC
62 ATACAGAAACAAGGAAAAACCATGCAGATGCATGCAGAAACAAGGAACAGCC
* *
8131066 ATGCGGATGCAGAAAAATATATGCAGAAACAAGGAACATCCATGCAGGTGTAGAAAAACATATAC
1 ATGCGGATGCAGAAAAATATATGCAGAAACAAGGAACAGCCATGCAGGTGCAGAAAAACATATAC
* *
8131131 AGAAACAAGGAACAGCCATGCAGATG
66 AGAAACAAGGAAAAACCATGCAGATG
8131157 TAGAGAATTG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
113 37 0.45
115 1 0.01
117 45 0.54
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (113 bp):
ATGCGGATGCAGAAAAATATATGCAGAAACAAGGAACAGCCATGCAGGTGCAGAAAAACATATAC
AGAAACAAGGAAAAACCATGCAGATGCATGCAGAAACAAGGAACAGCC
Found at i:8131112 original size:21 final size:21
Alignment explanation
Indices: 8131044--8131112 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
8131034 CATGCAGATG
*
8131044 CATGCAGAAACAAGGAACAGC
1 CATGCAGAAACAAGGAACATC
* ** * * *
8131065 CATGCGGATGC-AGAAAAATA
1 CATGCAGAAACAAGGAACATC
*
8131085 TATGCAGAAACAAGGAACATC
1 CATGCAGAAACAAGGAACATC
8131106 CATGCAG
1 CATGCAG
8131113 GTGTAGAAAA
Statistics
Matches: 32, Mismatches: 15, Indels: 2
0.65 0.31 0.04
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (21 bp):
CATGCAGAAACAAGGAACATC
Found at i:8131159 original size:41 final size:41
Alignment explanation
Indices: 8131048--8131160 Score: 172
Period size: 41 Copynumber: 2.8 Consensus size: 41
8131038 CAGATGCATG
* * * *
8131048 CAGAAACAAGGAACAGCCATGCGGATGCAGAAAAATATATG
1 CAGAAACAAGGAACAGCCATGCAGATGTAGAAAAACATATA
* *
8131089 CAGAAACAAGGAACATCCATGCAGGTGTAGAAAAACATATA
1 CAGAAACAAGGAACAGCCATGCAGATGTAGAAAAACATATA
8131130 CAGAAACAAGGAACAGCCATGCAGATGTAGA
1 CAGAAACAAGGAACAGCCATGCAGATGTAGA
8131161 GAATTGCCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.12
Consensus pattern (41 bp):
CAGAAACAAGGAACAGCCATGCAGATGTAGAAAAACATATA
Found at i:8132375 original size:22 final size:20
Alignment explanation
Indices: 8132314--8132375 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 20
8132304 CTATCTCTCA
8132314 TTTTTTTGTTTTTGTTTTGG
1 TTTTTTTGTTTTTGTTTTGG
*
8132334 TTATTTGTT-TTATTTGTTTTGT
1 TT-TTT-TTGTT-TTTGTTTTGG
8132356 TTTTTTATGTTTTTGCTTTT
1 TTTTTT-TGTTTTTG-TTTT
8132376 TGAAATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 19 0.54
ACGTcount: A:0.05, C:0.02, G:0.15, T:0.79
Consensus pattern (20 bp):
TTTTTTTGTTTTTGTTTTGG
Found at i:8132388 original size:43 final size:41
Alignment explanation
Indices: 8132314--8132402 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 41
8132304 CTATCTCTCA
** *
8132314 TTTTTTTGTTTTTGTTTTGGTTATTTGTTTTATTTGTTTTGT
1 TTTTTTTGTTTTTGTTTTGGAAATTTGTTTTACTT-TTTTGT
*
8132356 TTTTTTATGTTTTTGCTTTTTGAAATTT-TTTTACTTTTTTGT
1 TTTTTT-TGTTTTTG-TTTTGGAAATTTGTTTTACTTTTTTGT
*
8132398 CTTTT
1 TTTTT
8132403 ATCTTTTGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 16 0.40
43 15 0.38
44 9 0.22
ACGTcount: A:0.08, C:0.03, G:0.12, T:0.76
Consensus pattern (41 bp):
TTTTTTTGTTTTTGTTTTGGAAATTTGTTTTACTTTTTTGT
Found at i:8132432 original size:16 final size:16
Alignment explanation
Indices: 8132413--8132454 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8132403 ATCTTTTGGG
8132413 TTTTTTATTTTATT-AT
1 TTTTTTATTTT-TTAAT
*
8132429 TTTTTAATTTTTTAAT
1 TTTTTTATTTTTTAAT
8132445 TTTTTCTATT
1 TTTTT-TATT
8132455 GATTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 17 0.77
17 3 0.14
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTATTTTTTAAT
Found at i:8132440 original size:9 final size:8
Alignment explanation
Indices: 8132413--8132449 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
8132403 ATCTTTTGGG
8132413 TTTTTT-A
1 TTTTTTAA
8132420 TTTTATT-A
1 TTTT-TTAA
8132428 TTTTTTAA
1 TTTTTTAA
8132436 TTTTTTAA
1 TTTTTTAA
8132444 TTTTTT
1 TTTTTT
8132450 CTATTGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTAA
Found at i:8132737 original size:50 final size:49
Alignment explanation
Indices: 8132683--8132908 Score: 184
Period size: 50 Copynumber: 4.5 Consensus size: 49
8132673 GCCTAAAGGT
* * * *
8132683 CTTTAAAGATCTTGTTTGAAAATGACTCCATTTAAACAGAGGCTTTGAAA
1 CTTTAAAAATCTTATTTGAAAATGACTCC-TCTAAACAAAGGCTTTGAAA
* * * *
8132733 CTTTAAAAATATTCTTTGAAAATTGATCTCC-CTAAAAAAAGGTTTTGAAA
1 CTTTAAAAATCTTATTTGAAAA-TGA-CTCCTCTAAACAAAGGCTTTGAAA
* * * * * * *
8132783 TTTTAAAAGTCTTGTCTGAAAATGGCTCTTCCTAAACAGAGGCTTTGAAA
1 CTTTAAAAATCTTATTTGAAAATGACTCCT-CTAAACAAAGGCTTTGAAA
* * * * * * *
8132833 TTTTAAAAAAATTTTATTTAAAAATGGCTCCAACCAAACAAAGGCTTTAAAA
1 CTTT--AAAAATCTTATTTGAAAATGACTCC-TCTAAACAAAGGCTTTGAAA
8132885 CTTTAAAAATCTTATTTGAAAATG
1 CTTTAAAAATCTTATTTGAAAATG
8132909 CCTCATGACA
Statistics
Matches: 139, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 89 0.64
51 3 0.02
52 42 0.30
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (49 bp):
CTTTAAAAATCTTATTTGAAAATGACTCCTCTAAACAAAGGCTTTGAAA
Found at i:8133871 original size:24 final size:24
Alignment explanation
Indices: 8133814--8133880 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
8133804 TCCTCTTTTA
* *
8133814 TTTTTTTTTCTTTATCTTTTTGCT
1 TTTTTTTTTATATATCTTTTTGCT
*
8133838 TTTTGCTTTTATATAT-TTTTTGCCT
1 TTTT-TTTTTATATATCTTTTTG-CT
*
8133863 TTTTTTTTTA-ATTTCTTT
1 TTTTTTTTTATATATCTTT
8133881 CTCCTTTCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 3 0.09
24 18 0.51
25 14 0.40
ACGTcount: A:0.09, C:0.10, G:0.04, T:0.76
Consensus pattern (24 bp):
TTTTTTTTTATATATCTTTTTGCT
Found at i:8145817 original size:2 final size:2
Alignment explanation
Indices: 8145810--8145840 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8145800 TTAGCAGAAA
*
8145810 AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8145841 AGCTTTCGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8146022 original size:13 final size:13
Alignment explanation
Indices: 8146000--8146029 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8145990 CAGGAACAAG
*
8146000 GAAAATATATGCA
1 GAAAAAATATGCA
8146013 GAAAAAATATGCA
1 GAAAAAATATGCA
8146026 GAAA
1 GAAA
8146030 CAAGGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.17, T:0.17
Consensus pattern (13 bp):
GAAAAAATATGCA
Found at i:8146078 original size:31 final size:32
Alignment explanation
Indices: 8146014--8146079 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
8146004 ATATATGCAG
*
8146014 AAAAAATATGCAGAAACAAGGGAAAACCGTGC
1 AAAAAATATGCAGAAACAAGGGAAAACCATGC
* * *
8146046 AAAATATATGCAGAAATAA-GGAAAGCCATGC
1 AAAAAATATGCAGAAACAAGGGAAAACCATGC
8146077 AAA
1 AAA
8146080 TGCAGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.55, C:0.14, G:0.20, T:0.12
Consensus pattern (32 bp):
AAAAAATATGCAGAAACAAGGGAAAACCATGC
Found at i:8146136 original size:20 final size:20
Alignment explanation
Indices: 8146073--8146137 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
8146063 AAGGAAAGCC
*
8146073 ATGCAAATGCAGAAAAATAT
1 ATGCAGATGCAGAAAAATAT
** * ***
8146093 ATGCAGAAACA-AGGAAAGCC
1 ATGCAGATGCAGA-AAAATAT
8146113 ATGCAGATGCAGAAAAATAT
1 ATGCAGATGCAGAAAAATAT
8146133 ATGCA
1 ATGCA
8146138 AAAACAAGGA
Statistics
Matches: 30, Mismatches: 13, Indels: 4
0.64 0.28 0.09
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.15
Consensus pattern (20 bp):
ATGCAGATGCAGAAAAATAT
Found at i:8146166 original size:41 final size:40
Alignment explanation
Indices: 8146046--8146166 Score: 206
Period size: 40 Copynumber: 3.0 Consensus size: 40
8146036 AAAACCGTGC
* *
8146046 AAAATATATGCAGAAATAAGGAAAGCCATGCAAATGCAGA
1 AAAATATATGCAGAAACAAGGAAAGCCATGCAGATGCAGA
8146086 AAAATATATGCAGAAACAAGGAAAGCCATGCAGATGCAGA
1 AAAATATATGCAGAAACAAGGAAAGCCATGCAGATGCAGA
*
8146126 AAAATATATGCAAAAACAAGGAACAGCCATGCAGATGCAGA
1 AAAATATATGCAGAAACAAGGAA-AGCCATGCAGATGCAGA
8146167 GAATAGCCAT
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 60 0.78
41 17 0.22
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (40 bp):
AAAATATATGCAGAAACAAGGAAAGCCATGCAGATGCAGA
Found at i:8149943 original size:12 final size:12
Alignment explanation
Indices: 8149926--8149950 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8149916 AAGGGTATTT
8149926 ATTGAGCTCAAA
1 ATTGAGCTCAAA
8149938 ATTGAGCTCAAA
1 ATTGAGCTCAAA
8149950 A
1 A
8149951 AGGTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (12 bp):
ATTGAGCTCAAA
Found at i:8150421 original size:6 final size:6
Alignment explanation
Indices: 8150410--8150469 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
8150400 AAACCCTTGC
**
8150410 TTTTTG TTTTTG TTTTTG GGTTT- TTTTTG -TTTTG TTTTTG TTTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG -TTTTTG
8150457 TTTCTTTG TTTTT
1 -TT-TTTG TTTTT
8150470 ACAACATCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 8 0.17
6 23 0.50
7 11 0.24
8 4 0.09
ACGTcount: A:0.00, C:0.02, G:0.17, T:0.82
Consensus pattern (6 bp):
TTTTTG
Found at i:8150436 original size:22 final size:19
Alignment explanation
Indices: 8150410--8150469 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
8150400 AAACCCTTGC
8150410 TTTTTGTTTTTGTTTTTGGGT
1 TTTTTGTTTTTGTTTTT--GT
*
8150431 TTTTTTTGTTTTGTTTTTGT
1 TTTTTGT-TTTTGTTTTTGT
8150451 TTTTTGTTTCTTTGTTTTT
1 TTTTTG-TT-TTTGTTTTT
8150470 ACAACATCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 8 0.24
21 16 0.47
22 10 0.29
ACGTcount: A:0.00, C:0.02, G:0.17, T:0.82
Consensus pattern (19 bp):
TTTTTGTTTTTGTTTTTGT
Found at i:8150629 original size:68 final size:67
Alignment explanation
Indices: 8150551--8151595 Score: 604
Period size: 68 Copynumber: 15.5 Consensus size: 67
8150541 TTAAAATGCT
* ** * * *
8150551 AGTCAAAGAATAATAAGAATGAAATTGAA-CAGCGACTCAAAAAATAAAAGGATCAGGATTGAAT
1 AGTCAGAGAATAATAAGAA-GGGATTGAACCA-CGAGTCAAAAAATAAAAGGACCAGGATTGAAC
*
8150615 CGTG
64 CATG
* * * * *
8150619 AGTCAGAGAATAATGAGACAGGGATTGAACCATGAGTCAAAAAA-GAAAGAGATCGGGATTGAAC
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAG-GACCAGGATTGAAC
*
8150683 CGTG
64 CATG
* * * * *** * * * *
8150687 AGTCAAAGAATAGTGAA-ACA-AGATTAAAGTGCGAGTC---AGA-AAGA-GATCAGGATTGAAT
1 AGTCAGAGAATAAT-AAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAAC
* *
8150745 TATA
64 CATG
* * * **
8150749 AGTCAGAGAATAATGAGACAGGGATTGAATCTCGAGTC-AAAAATAAAGAAAACCAGGATTGAAC
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAA-AGGACCAGGATTGAAC
*
8150813 CATA
64 CATG
* * * * * *
8150817 AGTCAGAGAATAACAAGATAGGAATTTAACCACGAGTCAGAAAAT-AAAGAGACTATGATTGAAC
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAG-GACCAGGATTGAAC
8150881 CATG
64 CATG
* * * * *
8150885 AGTCAAAGAATAATGAA-ACAAGGATTGAACCATGAGT-AAAAAATAAAAAGACCAAGATTGAAC
1 AGTCAGAGAATAAT-AAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAAC
*
8150948 CGTG
64 CATG
* * * *
8150952 AGTTAGAGAATAACAAGACGGGGATTGAACCACGAGTCAAAAAAT-AAAGAGACCAGGATTGAAT
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAG-GACCAGGATTGAAC
8151016 CATG
64 CATG
* * * * * * *
8151020 AGTCAGAGAATAATGAGACAGGAATTGAATCACGAGTC-AAAAATAAAAAGATCAGGATTAAACT
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAACC
8151084 ATG
65 ATG
** *** *** ** * *
8151087 AGTCAGAGAATAACGAGATAATAATTGAACTGTGAGTCAAAAAATAAAAAAAATCAGGATTAAAC
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAAT-AAAAGGACCAGGATTGAAC
*
8151152 CGTG
64 CATG
* ** * * *
8151156 AGTCAAAGAATAA-AGAGACAACGATTGAACTACGAGT-AAAAAA-AAAA-GACCATGATTGAAT
1 AGTCAGAGAATAATA-AGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAAC
8151217 CATG
64 CATG
* * * * * * *
8151221 AGTCAAAGAATAACAAGATAGGGATTGAACTATGAGTAAAAAAAT-AAAGAGACCAAGATTGAAT
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAG-GACCAGGATTGAAC
*
8151285 CGTG
64 CATG
* * * *
8151289 AGTAAGAGAATAATGAA-ATAGGGATTGAACTATGAGTCAAAAAATAAAAAAGACCAGGATTGAA
1 AGTCAGAGAATAAT-AAGA-AGGGATTGAACCACGAGTCAAAAAAT-AAAAGGACCAGGATTGAA
* *
8151353 CTATA
63 CCATG
* * * ** * * * * *
8151358 AGTTAGAGAATAACAAAACAAAGATTAAACCATGAGTAAAAAAAAAAAAAGAGACCAGGATTAAA
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGT-CAAAAAATAAAAG-GACCAGGATTGAA
8151423 CCATG
63 CCATG
* * * *** * * *
8151428 AGTCAAAGAATAATGAGATAAGGATTGAACTGTGAGTCAAAAAATAAAAAGACAAGAATTGAACC
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAACC
*
8151493 ATA
65 ATG
* * * * * *
8151496 AG-CAAGAGAATAACAAGATAAGGATTAAACCACGAGTCAAAAAATAAAAAGACAAGAATTGAAC
1 AGTC-AGAGAATAATAAGA-AGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAAC
8151560 CATG
64 CATG
* * *
8151564 AGTCAGAGAATAACAAGATAAGGATTAAACCA
1 AGTCAGAGAATAATAAGA-AGGGATTGAACCA
8151596 TTAGTAAAAA
Statistics
Matches: 778, Mismatches: 164, Indels: 70
0.77 0.16 0.07
Matches are distributed among these distances:
61 1 0.00
62 28 0.04
63 12 0.02
64 4 0.01
65 45 0.06
66 18 0.02
67 120 0.15
68 382 0.49
69 117 0.15
70 51 0.07
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.18
Consensus pattern (67 bp):
AGTCAGAGAATAATAAGAAGGGATTGAACCACGAGTCAAAAAATAAAAGGACCAGGATTGAACCA
TG
Found at i:8150631 original size:34 final size:34
Alignment explanation
Indices: 8150593--8151594 Score: 196
Period size: 34 Copynumber: 29.7 Consensus size: 34
8150583 CGACTCAAAA
*
8150593 AATAAAAG-GATCAGGATTGAATCGTGAGTCAGAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCA-AG
* *
8150627 AAT-AATGAGA-CAGGGATTGAACCATGAGTCAA-
1 AATAAAAGAGATCA-GGATTGAACCGTGAGTCAAG
* *
8150659 AAAAGAAAGAGATCGGGATTGAACCGTGAGTCAAAG
1 AATA-AAAGAGATCAGGATTGAACCGTGAGTC-AAG
** * * * ** *
8150695 AAT-AGTGA-AACAAGATTAAAGTGCGAGTC-AG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCAAG
*** *
8150726 ----AAAGAGATCAGGATTGAATTATAAGTCAGAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * *
8150757 AAT-AATGAGA-CAGGGATTGAATC-TCGAGTCAAA
1 AATAAAAGAGATCA-GGATTGAACCGT-GAGTCAAG
* * * *
8150790 AAT-AAAGAAAACCAGGATTGAACCATAAGTCAGAG
1 AATAAAAG-AGATCAGGATTGAACCGTGAGTCA-AG
* * **
8150825 AATAACA-AGAT-AGGAATTTAACCACGAGTC-AG
1 AATAAAAGAGATCAGG-ATTGAACCGTGAGTCAAG
* * *
8150857 AAAATAAAGAGA-CTATGATTGAACCATGAGTCAAAG
1 AATA-AAAGAGATC-AGGATTGAACCGTGAGTC-AAG
* * * * *
8150893 AAT-AATGA-AACAAGGATTGAACCATGAGTAAAA
1 AATAAAAGAGATC-AGGATTGAACCGTGAGTCAAG
* * *
8150926 AATAAAA-AGACCAAGATTGAACCGTGAGTTAGAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * **
8150960 AATAACA-AGA-CGGGGATTGAACCACGAGTCAA-
1 AATAAAAGAGATC-AGGATTGAACCGTGAGTCAAG
* * * *
8150992 AAAATAAAGAGACCAGGATTGAATCATGAGTCAGAG
1 AATA-AAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * ** *
8151028 AAT-AATGAGA-CAGGAATTGAATCACGAGTCAAA
1 AATAAAAGAGATCAGG-ATTGAACCGTGAGTCAAG
* **
8151061 AATAAAA-AGATCAGGATTAAACTATGAGTCAGAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * ** * *
8151095 AAT-AACGAGATAATAATTGAACTGTGAGTCAAAA
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* * *
8151129 AATAAAAAAAATCAGGATTAAACCGTGAGTCAAAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* ***
8151164 AAT-AAAGAGA-CAACGATTGAACTACGAGT-AA-
1 AATAAAAGAGATC-AGGATTGAACCGTGAGTCAAG
* * * * *
8151195 AA-AAAAAAGACCATGATTGAATCATGAGTCAAAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* ** *
8151229 AATAACA-AGAT-AGGGATTGAACTATGAGT-AAA
1 AATAAAAGAGATCA-GGATTGAACCGTGAGTCAAG
* * * * *
8151261 AAAATAAAGAGACCAAGATTGAATCGTGAGTAAGAG
1 AATA-AAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * ** *
8151297 AAT-AATGAAAT-AGGGATTGAACTATGAGTCAAAA
1 AATAAAAGAGATCA-GGATTGAACCGTGAGTC-AAG
* * ** * *
8151331 AATAAAAAAGACCAGGATTGAACTATAAGTTAGAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTCA-AG
* * * * *
8151366 AATAACAA-A-A-CAAAGATTAAACCATGAGTAAAAAA
1 AATAA-AAGAGATC-AGGATTGAACCGTGAGT--CAAG
* * * *
8151401 AAAAAAAGAGACCAGGATTAAACCATGAGTCAAAG
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* * * *
8151436 AAT-AATGAGATAAGGATTGAACTGTGAGTCAAAA
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* * *
8151470 AATAAAA-AGA-CAAGAATTGAACCATAAG-CAAGAG
1 AATAAAAGAGATC-AGGATTGAACCGTGAGTC-A-AG
* * * ** *
8151504 AATAACA-AGATAAGGATTAAACCACGAGTCAAAA
1 AATAAAAGAGATCAGGATTGAACCGTGAGTC-AAG
* *
8151538 AATAAAA-AGA-CAAGAATTGAACCATGAGTCAGAG
1 AATAAAAGAGATC-AGGATTGAACCGTGAGTCA-AG
* * *
8151572 AATAACA-AGATAAGGATTAAACC
1 AATAAAAGAGATCAGGATTGAACC
8151595 ATTAGTAAAA
Statistics
Matches: 710, Mismatches: 180, Indels: 156
0.68 0.17 0.15
Matches are distributed among these distances:
28 3 0.00
29 14 0.02
31 25 0.04
32 18 0.03
33 99 0.14
34 429 0.60
35 87 0.12
36 34 0.05
37 1 0.00
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.18
Consensus pattern (34 bp):
AATAAAAGAGATCAGGATTGAACCGTGAGTCAAG
Found at i:8150997 original size:135 final size:135
Alignment explanation
Indices: 8150574--8151606 Score: 856
Period size: 135 Copynumber: 7.7 Consensus size: 135
8150564 TAAGAATGAA
* * * * *
8150574 ATTGAA-CAGCGACTCAAAAAATAAA-AGGATCAGGATTGAATCGTGAGTCAGAGAATAATGAGA
1 ATTGAACCA-CGAGTCAAAAAATAAAGA-GACCAGGATTGAACCATGAGTCAAAGAATAATGAGA
* * * * * * * * **
8150637 CAGGGATTGAACCATGAGTCAAAAAAGAAAGAGATCGGGATTGAACCGTGAGTCAAAGAATAGTG
64 CAAGGATTGAACCATGAGT-AAAAAATAAAAAGACCAGGATTGAACCATAAGTCAGAGAATA-AC
*
8150702 AA-ACAA-G
127 AAGATAAGG
* *** * * ** * *
8150709 ATTAAAGTGCGAGTC-----AGAAAGAGATCAGGATTGAATTATAAGTCAGAGAATAATGAGACA
1 ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGACA
* * * *
8150769 GGGATTGAATC-TCGAGTCAAAAATAAAGAAAACCAGGATTGAACCATAAGTCAGAGAATAACAA
66 AGGATTGAACCAT-GAGTAAAAAATAAA-AAGACCAGGATTGAACCATAAGTCAGAGAATAACAA
8150833 GAT-AGG
129 GATAAGG
* * * * *
8150839 AATTTAACCACGAGTCAGAAAATAAAGAGACTATGATTGAACCATGAGTCAAAGAATAATGAAAC
1 -ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGAC
* * * *
8150904 AAGGATTGAACCATGAGTAAAAAATAAAAAGACCAAGATTGAACCGTGAGTTAGAGAATAACAAG
65 AAGGATTGAACCATGAGTAAAAAATAAAAAGACCAGGATTGAACCATAAGTCAGAGAATAACAAG
***
8150969 ACGGGG
130 ATAAGG
* *
8150975 ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAATCATGAGTCAGAGAATAATGAGAC-
1 ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGACA
* * * * * * * *
8151039 AGGAATTGAATCACGAGTCAAAAATAAAAAGATCAGGATTAAACTATGAGTCAGAGAATAACGAG
66 AGG-ATTGAACCATGAGTAAAAAATAAAAAGACCAGGATTGAACCATAAGTCAGAGAATAACAAG
**
8151104 ATAATA
130 ATAAGG
*** * * * * * *
8151110 ATTGAACTGTGAGTCAAAAAATAAAAAAAATCAGGATTAAACCGTGAGTCAAAGAATAAAGAGAC
1 ATTGAACCACGAGTCAAAAAAT-AAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGAC
* * * * * * *
8151175 AACGATTGAACTACGAGT-AAAAA-AAAAAGACCATGATTGAATCATGAGTCAAAGAATAACAAG
65 AAGGATTGAACCATGAGTAAAAAATAAAAAGACCAGGATTGAACCATAAGTCAGAGAATAACAAG
*
8151238 ATAGGG
130 ATAAGG
* * * * * * * *
8151244 ATTGAACTATGAGTAAAAAAATAAAGAGACCAAGATTGAATCGTGAGT-AAGAGAATAATGAAAT
1 ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAA-AGAATAATGAGAC
* * * *
8151308 AGGGATTGAACTATGAGTCAAAAAATAAAAAAGACCAGGATTGAACTATAAGTTAGAGAATAACA
65 AAGGATTGAACCATGAGT-AAAAAAT-AAAAAGACCAGGATTGAACCATAAGTCAGAGAATAACA
* * *
8151373 AAACAAAG
128 AGATAAGG
* * * * *
8151381 ATTAAACCATGAGTAAAAAAAAAAAAAGAGACCAGGATTAAACCATGAGTCAAAGAATAATGAGA
1 ATTGAACCACGAGT--CAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGA
* ** * *
8151446 TAAGGATTGAACTGTGAGTCAAAAAATAAAAAGACAAGAATTGAACCATAAG-CAAGAGAATAAC
64 CAAGGATTGAACCATGAGT-AAAAAATAAAAAGACCAGGATTGAACCATAAGTC-AGAGAATAAC
8151510 AAGATAAGG
127 AAGATAAGG
* * * * * ** *
8151519 ATTAAACCACGAGTCAAAAAATAAAAAGACAAGAATTGAACCATGAGTCAGAGAATAACAAGATA
1 ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGACA
* *
8151584 AGGATTAAACCATTAGTAAAAAA
66 AGGATTGAACCATGAGTAAAAAA
8151607 AGATTAAGAC
Statistics
Matches: 727, Mismatches: 145, Indels: 52
0.79 0.16 0.06
Matches are distributed among these distances:
129 12 0.02
130 80 0.11
131 12 0.02
132 2 0.00
133 45 0.06
134 59 0.08
135 187 0.26
136 161 0.22
137 51 0.07
138 51 0.07
139 65 0.09
140 2 0.00
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.18
Consensus pattern (135 bp):
ATTGAACCACGAGTCAAAAAATAAAGAGACCAGGATTGAACCATGAGTCAAAGAATAATGAGACA
AGGATTGAACCATGAGTAAAAAATAAAAAGACCAGGATTGAACCATAAGTCAGAGAATAACAAGA
TAAGG
Found at i:8151595 original size:34 final size:34
Alignment explanation
Indices: 8150735--8151596 Score: 511
Period size: 34 Copynumber: 25.4 Consensus size: 34
8150725 GAAAGAGATC
** * * **
8150735 AGGATTGAATTATAAGTCAGAGAATAATGAGACA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8150769 GGGATTGAATC-TCGAGTCAAA-AATAAAGAAAACC
1 AGGATTGAACCAT-GAGTCAAAGAATAAA-AAGACA
* * * *
8150803 AGGATTGAACCATAAGTCAGAGAATAACAAGA-T
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8150836 AGGAATTTAACCACGAGTCAGAA-AATAAAGAGACT
1 AGG-ATTGAACCATGAGTCA-AAGAATAAAAAGACA
* *
8150871 ATGATTGAACCATGAGTCAAAGAATAATGAA-ACA
1 AGGATTGAACCATGAGTCAAAGAATAA-AAAGACA
*
8150905 AGGATTGAACCATGAGT-AAAAAATAAAAAGACCA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGA-CA
* * * * *
8150939 A-GATTGAACCGTGAGTTAGAGAATAACAAGACG
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * * *
8150972 GGGATTGAACCACGAGTCAAAAAATAAAGAGACC
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * **
8151006 AGGATTGAATCATGAGTCAGAGAATAATGAGAC-
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* *
8151039 AGGAATTGAATCACGAGTCAAA-AATAAAAAGATC-
1 AGG-ATTGAACCATGAGTCAAAGAATAAAAAGA-CA
* * * ** *
8151073 AGGATTAAACTATGAGTCAGAGAATAACGAGATA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
** ** * *
8151107 ATAATTGAACTGTGAGTCAAAAAATAAAAA-AAA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * *
8151140 TCAGGATTAAACCGTGAGTCAAAGAATAAAGAGACA
1 --AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8151176 ACGATTGAACTACGAGT-AAA-AA-AAAAAGACC
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8151207 ATGATTGAATCATGAGTCAAAGAATAACAAGATA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * * *
8151241 GGGATTGAACTATGAGTAAAAAAATAAAGAGACCA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGA-CA
* * * *
8151276 A-GATTGAATCGTGAGT-AAGAGAATAATGAA-ATA
1 AGGATTGAACCATGAGTCAA-AGAATAA-AAAGACA
* * * *
8151309 GGGATTGAACTATGAGTCAAAAAATAAAAAAGACC
1 AGGATTGAACCATGAGTCAAAGAAT-AAAAAGACA
* * * *
8151344 AGGATTGAACTATAAGTTAGAGAATAACAAA-ACA
1 AGGATTGAACCATGAGTCAAAGAATAA-AAAGACA
* * * * * *
8151378 AAGATTAAACCATGAGTAAAAAAAAAAAAAGAGACC
1 AGGATTGAACCATGAGT-CAAAGAATAAAA-AGACA
* ** *
8151414 AGGATTAAACCATGAGTCAAAGAATAATGAGATA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
** *
8151448 AGGATTGAACTGTGAGTCAAAAAATAAAAAGACA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8151482 AGAATTGAACCATAAG-CAAGAGAATAACAAGATA
1 AGGATTGAACCATGAGTCAA-AGAATAAAAAGACA
* * *
8151516 AGGATTAAACCACGAGTCAAAAAATAAAAAGACA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
* * * *
8151550 AGAATTGAACCATGAGTCAGAGAATAACAAGATA
1 AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
*
8151584 AGGATTAAACCAT
1 AGGATTGAACCAT
8151597 TAGTAAAAAA
Statistics
Matches: 622, Mismatches: 170, Indels: 72
0.72 0.20 0.08
Matches are distributed among these distances:
31 20 0.03
32 7 0.01
33 72 0.12
34 421 0.68
35 82 0.13
36 20 0.03
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.18
Consensus pattern (34 bp):
AGGATTGAACCATGAGTCAAAGAATAAAAAGACA
Found at i:8151606 original size:68 final size:68
Alignment explanation
Indices: 8150735--8151607 Score: 691
Period size: 68 Copynumber: 12.9 Consensus size: 68
8150725 GAAAGAGATC
** * ** * * *
8150735 AGGATTGAATTATAAGTCAGAGAATAATGAGACAGGGATTGAATC-TCGAGTC-AAAAATAAAGA
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCAT-GAGTCAAAAAATAAA-A
* *
8150798 AAACC
64 AGACA
* * * * *
8150803 AGGATTGAACCATAAGTCAGAGAATAACAAGAT-AGGAATTTAACCACGAGTCAGAAAATAAAGA
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGG-ATTGAACCATGAGTCAAAAAATAAAAA
*
8150867 GACT
65 GACA
* * * *
8150871 ATGATTGAACCATGAGTCAAAGAATAATGAA-ACAAGGATTGAACCATGAGT-AAAAAATAAAAA
1 AGGATTGAACCATGAGTCAGAGAATAA-CAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAA
8150934 GACCA
65 GA-CA
* * *** * *
8150939 A-GATTGAACCGTGAGTTAGAGAATAACAAGACGGGGATTGAACCACGAGTCAAAAAATAAAGAG
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAAG
*
8151003 ACC
66 ACA
* ** * * *
8151006 AGGATTGAATCATGAGTCAGAGAATAATGAGA-CAGGAATTGAATCACGAGTC-AAAAATAAAAA
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGG-ATTGAACCATGAGTCAAAAAATAAAAA
8151069 GATC-
65 GA-CA
* * * ** **
8151073 AGGATTAAACTATGAGTCAGAGAATAACGAGATAATAATTGAACTGTGAGTCAAAAAATAAAAA-
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAAG
*
8151137 AAA
66 ACA
* * * * * * *
8151140 TCAGGATTAAACCGTGAGTCAAAGAATAA-AGAGACAACGATTGAACTACGAGT--AAAAA-AAA
1 --AGGATTGAACCATGAGTCAGAGAATAACA-AGATAAGGATTGAACCATGAGTCAAAAAATAAA
*
8151201 AAGACC
63 AAGACA
* * * * * * *
8151207 ATGATTGAATCATGAGTCAAAGAATAACAAGATAGGGATTGAACTATGAGTAAAAAAATAAAGAG
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAAG
8151272 ACCA
66 A-CA
* * * * * *
8151276 A-GATTGAATCGTGAGTAAGAGAATAATGAA-ATAGGGATTGAACTATGAGTCAAAAAATAAAAA
1 AGGATTGAACCATGAGTCAGAGAATAA-CAAGATAAGGATTGAACCATGAGTCAAAAAAT-AAAA
*
8151339 AGACC
64 AGACA
* * * * * * * * *
8151344 AGGATTGAACTATAAGTTAGAGAATAACAAAACAAAGATTAAACCATGAGTAAAAAAAAAAAAAG
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGT-CAAAAAATAAAA-
*
8151409 AGACC
64 AGACA
* * ** **
8151414 AGGATTAAACCATGAGTCAAAGAATAATGAGATAAGGATTGAACTGTGAGTCAAAAAATAAAAAG
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAAG
8151479 ACA
66 ACA
* * * *
8151482 AGAATTGAACCATAAG-CAAGAGAATAACAAGATAAGGATTAAACCACGAGTCAAAAAATAAAAA
1 AGGATTGAACCATGAGTC-AGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAA
8151546 GACA
65 GACA
* * * *
8151550 AGAATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTAAACCATTAGTAAAAAAA
1 AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAA
8151608 GATTAAGACT
Statistics
Matches: 650, Mismatches: 124, Indels: 62
0.78 0.15 0.07
Matches are distributed among these distances:
65 41 0.06
66 8 0.01
67 121 0.19
68 317 0.49
69 114 0.18
70 49 0.08
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.18
Consensus pattern (68 bp):
AGGATTGAACCATGAGTCAGAGAATAACAAGATAAGGATTGAACCATGAGTCAAAAAATAAAAAG
ACA
Found at i:8151629 original size:28 final size:28
Alignment explanation
Indices: 8151589--8151664 Score: 71
Period size: 29 Copynumber: 2.7 Consensus size: 28
8151579 AGATAAGGAT
* *
8151589 TAAACCATTAGTAAAAAAAGATTAAGAC
1 TAAACCGTAAGTAAAAAAAGATTAAGAC
* * * * *
8151617 TAAACTGTGAGTAAGAAAGAGATTAGGAT
1 TAAACCGTAAGTAA-AAAAAGATTAAGAC
*
8151646 TAAACCGTAAGTCAAAAAA
1 TAAACCGTAAGTAAAAAAA
8151665 TAACAAGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (28 bp):
TAAACCGTAAGTAAAAAAAGATTAAGAC
Found at i:8151809 original size:34 final size:34
Alignment explanation
Indices: 8151765--8151831 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
8151755 AGTCAAAAGA
* *
8151765 GAGACCAAGATTGAACTGCAAGTTAAAGAATAAC
1 GAGACCAAGATTGAACTGCAAGTCAAAAAATAAC
* *
8151799 GAGACTAAGATTGAACTGCTAGTCAAAAAATAA
1 GAGACCAAGATTGAACTGCAAGTCAAAAAATAA
8151832 AGGATCGGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (34 bp):
GAGACCAAGATTGAACTGCAAGTCAAAAAATAAC
Found at i:8162980 original size:11 final size:11
Alignment explanation
Indices: 8162964--8162993 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8162954 AAGTGAATAC
8162964 GCAAAGTGTAT
1 GCAAAGTGTAT
*
8162975 GCAAAGTGTGT
1 GCAAAGTGTAT
8162986 GCAAAGTG
1 GCAAAGTG
8162994 ACACATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.23
Consensus pattern (11 bp):
GCAAAGTGTAT
Found at i:8163029 original size:16 final size:16
Alignment explanation
Indices: 8163008--8163042 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8162998 ATTAATCAAA
*
8163008 ATATCATAACTAAATC
1 ATATCATAAATAAATC
8163024 ATATCATAAATAAATC
1 ATATCATAAATAAATC
8163040 ATA
1 ATA
8163043 AACACAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (16 bp):
ATATCATAAATAAATC
Found at i:8168807 original size:42 final size:41
Alignment explanation
Indices: 8168717--8168813 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 41
8168707 AAAAAAGGGA
* ** * * * *
8168717 CATTTGCATCACTCACATCTATATCAATAAAAAGACATTTG
1 CATTTACATCACTTGCATCTACATCAAAAAAAAAACACTTG
* *
8168758 CTTTTACATTACTTGCATCTACATCATAAAAAAAAACACTTG
1 CATTTACATCACTTGCATCTACATCA-AAAAAAAAACACTTG
8168800 CATTTACATCACTT
1 CATTTACATCACTT
8168814 ATATTTGTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
41 20 0.45
42 24 0.55
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (41 bp):
CATTTACATCACTTGCATCTACATCAAAAAAAAAACACTTG
Found at i:8169061 original size:98 final size:100
Alignment explanation
Indices: 8168868--8169093 Score: 307
Period size: 98 Copynumber: 2.3 Consensus size: 100
8168858 CTCATATCTG
* * * *
8168868 CATCAACAAAAAGACATTTATATTTGCATCACTTGCATCTACATCACAAAAAAAAGAAAGATATT
1 CATCAACAAAAAGACATTCACATTTGCATCACTTGCATCTACATCACAAAAAAAAGAAAAAAATT
**
8168933 TGCATTTGTATCACTCGCATTCATACTTACATGTA
66 CACATTTGTATCACTCGCATTCATACTTACATGTA
* * * *
8168968 CATCAATAAAAAGACATTCACATTTGTATCACTTGCATTTGCAT-A-AAAAAACAA-AAAAAAAT
1 CATCAACAAAAAGACATTCACATTTGCATCACTTGCATCTACATCACAAAAAA-AAGAAAAAAAT
* *
8169030 TCATATTTGTATCACTCGCATTCGTACTTACATGTA
65 TCACATTTGTATCACTCGCATTCATACTTACATGTA
8169066 -ATCAACAAAAAGACATTCACATTTGCAT
1 CATCAACAAAAAGACATTCACATTTGCAT
8169094 TCAAATCTAT
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
97 26 0.23
98 44 0.40
99 3 0.03
100 38 0.34
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (100 bp):
CATCAACAAAAAGACATTCACATTTGCATCACTTGCATCTACATCACAAAAAAAAGAAAAAAATT
CACATTTGTATCACTCGCATTCATACTTACATGTA
Found at i:8169114 original size:97 final size:99
Alignment explanation
Indices: 8168936--8169119 Score: 259
Period size: 98 Copynumber: 1.9 Consensus size: 99
8168926 AGATATTTGC
* * **
8168936 ATTTGTATCACTCGCATTCATACTTACATGTACATCAATAAAAAGACATTCACATTTGTATCACT
1 ATTTGTATCACTCGCATTCATACTTACATGTACATCAACAAAAAGACATTCACATTTGCATCAAA
* *
8169001 TGCATTTGCATAAAAAA-ACAAAAAAAAATTCAT
66 TGCATATGCACAAAAAAGACAAAAAAAAATTCAT
*
8169034 ATTTGTATCACTCGCATTCGTACTTACATGTA-ATCAACAAAAAGACATTCACATTTGCATTCAA
1 ATTTGTATCACTCGCATTCATACTTACATGTACATCAACAAAAAGACATTCACATTTGCA-TCAA
8169098 AT-CTATAT-CACAAAAAAGACAA
65 ATGC-ATATGCACAAAAAAGACAA
8169120 TTGCATTTGT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
97 34 0.45
98 42 0.55
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (99 bp):
ATTTGTATCACTCGCATTCATACTTACATGTACATCAACAAAAAGACATTCACATTTGCATCAAA
TGCATATGCACAAAAAAGACAAAAAAAAATTCAT
Found at i:8169255 original size:128 final size:125
Alignment explanation
Indices: 8169084--8169313 Score: 280
Period size: 128 Copynumber: 1.8 Consensus size: 125
8169074 AAAGACATTC
* * * * ** *
8169084 ACATTTGCATTCAAATCTATATCACAAAAAAGACAATTGCATTTGTATGGCTTGCATTTACATCA
1 ACATTTGCATTCAAACCTACATCACAAAAAAGACAATTACATTTGCATCACTTGCATCTACATCA
*
8169149 CAAAAAAAAAATATTCGTATTTGCATCACTTGCATTTGCACTTGCATGTGCATCATCAAAAAG
66 C--AAAAAAAATA-TCATATTTGCATCACTTGCATTTGCACTTGCATGTGCATCATCAAAAAG
* * * * * *
8169212 ACATTTGTATTCACACCTACATCACAAAAGAGATATTTACATTTGCATCACTTGTATCTACATCA
1 ACATTTGCATTCAAACCTACATCACAAAAAAGACAATTACATTTGCATCACTTGCATCTACATCA
* * *
8169277 CAAGAAAGATATCATATTTGCATCACTTGTATTTGCA
66 CAAAAAAAATATCATATTTGCATCACTTGCATTTGCA
8169314 ATTGTATAAG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
125 24 0.28
126 8 0.09
128 53 0.62
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (125 bp):
ACATTTGCATTCAAACCTACATCACAAAAAAGACAATTACATTTGCATCACTTGCATCTACATCA
CAAAAAAAATATCATATTTGCATCACTTGCATTTGCACTTGCATGTGCATCATCAAAAAG
Found at i:8169307 original size:40 final size:41
Alignment explanation
Indices: 8169228--8169308 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 41
8169218 GTATTCACAC
*
8169228 CTACATCACAAAAGAGATATTTACATTTGCATCACTTGTAT
1 CTACATCACAAAAGAGATATTCACATTTGCATCACTTGTAT
*
8169269 CTACATCACAAGAA-AGATA-TCATATTTGCATCACTTGTAT
1 CTACATCACAA-AAGAGATATTCACATTTGCATCACTTGTAT
8169309 TTGCAATTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 19 0.51
41 16 0.43
42 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (41 bp):
CTACATCACAAAAGAGATATTCACATTTGCATCACTTGTAT
Found at i:8169770 original size:22 final size:22
Alignment explanation
Indices: 8169738--8169872 Score: 119
Period size: 22 Copynumber: 6.1 Consensus size: 22
8169728 AGATTAAAAT
* * *
8169738 TAAGCCGAGATTAGTTAGCACA
1 TAAGCCCAGATTAGCTGGCACA
8169760 TAAGCCCAGATTAGCTGGCACA
1 TAAGCCCAGATTAGCTGGCACA
* ***
8169782 TATGCCCAGATTAGCTAATACA
1 TAAGCCCAGATTAGCTGGCACA
* * * *
8169804 TGAGCCCAAATTAGTTGGCACT
1 TAAGCCCAGATTAGCTGGCACA
* *
8169826 TAA-ACCAGATTAGTTGGCACA
1 TAAGCCCAGATTAGCTGGCACA
* *
8169847 TAAACTCAAGATTAGCTGGCACA
1 TAAGC-CCAGATTAGCTGGCACA
8169870 TAA
1 TAA
8169873 ACTCAAATTA
Statistics
Matches: 89, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
21 18 0.20
22 53 0.60
23 18 0.20
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (22 bp):
TAAGCCCAGATTAGCTGGCACA
Found at i:8169866 original size:23 final size:23
Alignment explanation
Indices: 8169813--8169882 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
8169803 ATGAGCCCAA
*
8169813 ATTAGTTGGCACTTAAAC-C-AG
1 ATTAGTTGGCACATAAACTCAAG
8169834 ATTAGTTGGCACATAAACTCAAG
1 ATTAGTTGGCACATAAACTCAAG
*
8169857 ATTAGCTGGCACATAAACTCAA-
1 ATTAGTTGGCACATAAACTCAAG
8169879 ATTA
1 ATTA
8169883 CCAGTCATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 17 0.38
22 5 0.11
23 23 0.51
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (23 bp):
ATTAGTTGGCACATAAACTCAAG
Found at i:8170008 original size:36 final size:37
Alignment explanation
Indices: 8169963--8170122 Score: 142
Period size: 35 Copynumber: 4.5 Consensus size: 37
8169953 GTCCCAGTCG
**
8169963 TTCTCTATTTTTTTGACTTGTGGTGTTATCTC-GATCA
1 TTCT-TATTTTTTCAACTTGTGGTGTTATCTCGGATCA
* *
8170000 TTATTA--TTTTCAACTTGTGGTATTATC-CTGG-TCA
1 TTCTTATTTTTTCAACTTGTGGTGTTATCTC-GGATCA
* *
8170034 TTCTTA-TTTTTCAACTTGTGGTGTTGTCCCGGA-CA
1 TTCTTATTTTTTCAACTTGTGGTGTTATCTCGGATCA
* *
8170069 TTCTTTATTTTTT-GACTTGTGATGTTATCTTC-GATCA
1 TTC-TTATTTTTTCAACTTGTGGTGTTATC-TCGGATCA
8170106 TTCTTA-TTTTTCAACTT
1 TTCTTATTTTTTCAACTT
8170123 ATCCTATCGT
Statistics
Matches: 101, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
33 1 0.01
34 26 0.26
35 32 0.32
36 28 0.28
37 14 0.14
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.53
Consensus pattern (37 bp):
TTCTTATTTTTTCAACTTGTGGTGTTATCTCGGATCA
Found at i:8170052 original size:35 final size:36
Alignment explanation
Indices: 8169978--8170122 Score: 165
Period size: 36 Copynumber: 4.1 Consensus size: 36
8169968 TATTTTTTTG
*
8169978 ACTTGTGGTGTTAT-CTCGATCATTATTA-TTTTCA
1 ACTTGTGGTGTTATCCTCGATCATTCTTATTTTTCA
* *
8170012 ACTTGTGGTATTATCCT-GGTCATTCTTATTTTTCA
1 ACTTGTGGTGTTATCCTCGATCATTCTTATTTTTCA
* **
8170047 ACTTGTGGTGTTGTCC-CGGA-CATTCTTTATTTTTTG
1 ACTTGTGGTGTTATCCTC-GATCATTC-TTATTTTTCA
* *
8170083 ACTTGTGATGTTATCTTCGATCATTCTTATTTTTCA
1 ACTTGTGGTGTTATCCTCGATCATTCTTATTTTTCA
8170119 ACTT
1 ACTT
8170123 ATCCTATCGT
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
34 22 0.24
35 27 0.30
36 36 0.40
37 6 0.07
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (36 bp):
ACTTGTGGTGTTATCCTCGATCATTCTTATTTTTCA
Found at i:8170079 original size:106 final size:107
Alignment explanation
Indices: 8169925--8170122 Score: 274
Period size: 106 Copynumber: 1.9 Consensus size: 107
8169915 GTTGTCATGA
* * * * *
8169925 TCATTTTTATTTTTTAACTTATAGTATTGTCCCAGTCGTTCTCTATTTTTTTGACTTGTGGTGTT
1 TCATTCTTATTTTTCAACTTATAGTATTGTCCCAGACATTCTCTA-TTTTTTGACTTGTGATGTT
8169990 ATC-TCGATCATTATTA-TTTTCAACTTGTGGTATTATCCTGG
65 ATCTTCGATCATTATTATTTTTCAACTTGTGGTATTATCCTGG
* * * * *
8170031 TCATTCTTATTTTTCAACTTGTGGTGTTGTCCCGGACATTCTTTATTTTTTGACTTGTGATGTTA
1 TCATTCTTATTTTTCAACTTATAGTATTGTCCCAGACATTCTCTATTTTTTGACTTGTGATGTTA
*
8170096 TCTTCGATCATTCTTATTTTTCAACTT
66 TCTTCGATCATTATTATTTTTCAACTT
8170123 ATCCTATCGT
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
105 21 0.27
106 48 0.61
107 10 0.13
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (107 bp):
TCATTCTTATTTTTCAACTTATAGTATTGTCCCAGACATTCTCTATTTTTTGACTTGTGATGTTA
TCTTCGATCATTATTATTTTTCAACTTGTGGTATTATCCTGG
Found at i:8170150 original size:106 final size:105
Alignment explanation
Indices: 8169922--8170150 Score: 246
Period size: 106 Copynumber: 2.2 Consensus size: 105
8169912 AATGTTGTCA
* * * *
8169922 TGATCATTTTTATTTTTTAACTTATAGTATTGTCCCAGTCGTTCTCTATTTTTTTGACTTGTGGT
1 TGATCATTTTT-TTTTTCAACTTATAGTATTGTCCCAGACATTCTCTATTTTTTTGACTTGTGAT
* ** *
8169987 GTTATCTCGATCATTATTATTTTCAACTTGTGGTATTATCC
65 GTTATCTCGATCATTATTATTTTCAACTTATCCTATCATCC
* * * * * * *
8170028 TGGTCATTCTTATTTTTCAACTTGTGGTGTTGTCCCGGACATTCTTTA-TTTTTTGACTTGTGAT
1 TGATCATT-TTTTTTTTCAACTTATAGTATTGTCCCAGACATTCTCTATTTTTTTGACTTGTGAT
* *
8170092 GTTATCTTCGATCATTCTTATTTTTCAACTTATCCTATCGT-C
65 GTTATC-TCGATCATTATTA-TTTTCAACTTATCCTATCATCC
8170134 TCGATCATTTTTTTTTT
1 T-GATCATTTTTTTTTT
8170151 TTTTTTGACT
Statistics
Matches: 100, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
105 21 0.21
106 56 0.56
107 23 0.23
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.53
Consensus pattern (105 bp):
TGATCATTTTTTTTTTCAACTTATAGTATTGTCCCAGACATTCTCTATTTTTTTGACTTGTGATG
TTATCTCGATCATTATTATTTTCAACTTATCCTATCATCC
Found at i:8170171 original size:25 final size:25
Alignment explanation
Indices: 8170143--8170194 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
8170133 CTCGATCATT
*
8170143 TTTTTTTTTTTTTTGACTTATAGTG
1 TTTTTTTATTTTTTGACTTATAGTG
8170168 TTTTTTTATTTTTTGACTTATAGTG
1 TTTTTTTATTTTTTGACTTATAGTG
8170193 TT
1 TT
8170195 ATCCCGATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.04, G:0.12, T:0.71
Consensus pattern (25 bp):
TTTTTTTATTTTTTGACTTATAGTG
Found at i:8170209 original size:36 final size:36
Alignment explanation
Indices: 8170169--8170549 Score: 213
Period size: 36 Copynumber: 10.8 Consensus size: 36
8170159 CTTATAGTGT
* *
8170169 TTTTTTATTTTTTGACTTATAGTGTTATCCCGATCA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * * *
8170205 -TTTTTATTTTTTGACTTATGGTATTGTTCTGGTCG
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * * *
8170240 TTCTTTATTTTTTAATTTGTGGTGTTGTCTCGATCA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * *
8170276 -TTTTCATTTTTTGACTTATGATGTTGTCCC-A-AA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * ** *
8170309 TTATTTT-TTTTTTGACCTGTAGTGTCAT-CCTAGTCA
1 TT-TTTTATTTTTTGACTTATGGTGTTGTCCCGA-TCA
* ** * *
8170345 -TATTTATTTTTCAACTTATGGTTTTGTCCCGATCG
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * *
8170380 TTCTTTATTTTCTT-AGTTGTGGTGTTGTCCCAATCA
1 TTTTTTATTTT-TTGACTTATGGTGTTGTCCCGATCA
* * * *** *
8170416 -TTTTTATTTTTTGACTTGTGGTATTATTTTGGTCA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * *
8170451 TTTTTTATTTTTCGACTTGTGATGTTGTCCCGGTCA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * * **
8170487 TTCTTTATTTTTCGACTTATGGTATTTTCCTAATCA
1 TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
* * * *
8170523 TTCTTTATTTTCTAACTTATGATGTTG
1 TTTTTTATTTTTTGACTTATGGTGTTG
8170550 CCTAAAAAAA
Statistics
Matches: 252, Mismatches: 81, Indels: 24
0.71 0.23 0.07
Matches are distributed among these distances:
33 3 0.01
34 23 0.09
35 93 0.37
36 132 0.52
37 1 0.00
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.56
Consensus pattern (36 bp):
TTTTTTATTTTTTGACTTATGGTGTTGTCCCGATCA
Found at i:8170247 original size:71 final size:71
Alignment explanation
Indices: 8170172--8170533 Score: 277
Period size: 71 Copynumber: 5.1 Consensus size: 71
8170162 ATAGTGTTTT
* *
8170172 TTTATTTTTTGACTTATAGTGTTATCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTGG
1 TTTATTTTTTGACTTGTAGTGTTGTCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTGG
*
8170237 TCGTTC
66 TCATTC
* * * * * * * **
8170243 TTTATTTTTTAATTTGTGGTGTTGTCTCGATCATTTTCATTTTTTGACTTATGATGTTG-TC-CC
1 TTTATTTTTTGACTTGTAGTGTTGTCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTGG
** *
8170306 AAATTA
66 TCATTC
* * ** * * ** * * *
8170312 TTTTTTTTTTGACCTGTAGTGTCAT-CCTAGTCATATTTATTTTTCAACTTATGGTTTTGTCCCG
1 TTTATTTTTTGACTTGTAGTGTTGTCCCGA-TCATTTTTATTTTTTGACTTATGGTATTGTTCTG
* *
8170376 ATCGTTC
65 GTCATTC
* * * * * *
8170383 TTTATTTTCTT-AGTTGTGGTGTTGTCCCAATCATTTTTATTTTTTGACTTGTGGTATTATTTTG
1 TTTATTTT-TTGACTTGTAGTGTTGTCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTG
*
8170447 GTCATTT
65 GTCATTC
* * *
8170454 TTTATTTTTCGACTTGT-GATGTTGTCCCGGTCATTCTTTATTTTTCGACTTATGGTATT-TTCC
1 TTTATTTTTTGACTTGTAG-TGTTGTCCCGATCATT-TTTATTTTTTGACTTATGGTATTGTT-C
**
8170517 TAATCATTC
63 TGGTCATTC
8170526 TTTATTTT
1 TTTATTTT
8170534 CTAACTTATG
Statistics
Matches: 216, Mismatches: 66, Indels: 17
0.72 0.22 0.06
Matches are distributed among these distances:
68 2 0.01
69 43 0.20
70 5 0.02
71 126 0.58
72 40 0.19
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.56
Consensus pattern (71 bp):
TTTATTTTTTGACTTGTAGTGTTGTCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTGG
TCATTC
Found at i:8170362 original size:140 final size:141
Alignment explanation
Indices: 8170171--8170432 Score: 350
Period size: 140 Copynumber: 1.9 Consensus size: 141
8170161 TATAGTGTTT
* * * * ** * *
8170171 TTTTATTTTTTGACTTATAGTGTTATCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCTG
1 TTTTATTTTTTGACCTATAGTGTCATCCAGATCATATTTATTTTTCAACTTATGGTATTGTCCCG
* * * *
8170236 GTCGTTCTTTATTTT-TTAATTTGTGGTGTTGTCTCGATCATTTTCATTTTTTGACTTATGATGT
66 ATCGTTCTTTATTTTCTT-AGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTTATGATGT
8170300 TGTCCCAAATTA
130 TGTCCCAAATTA
* *
8170312 TTTT-TTTTTTGACCTGTAGTGTCATCCTAG-TCATATTTATTTTTCAACTTATGGTTTTGTCCC
1 TTTTATTTTTTGACCTATAGTGTCATCC-AGATCATATTTATTTTTCAACTTATGGTATTGTCCC
*
8170375 GATCGTTCTTTATTTTCTTAGTTGTGGTGTTGTCCCAATCATTTTTATTTTTTGACTT
65 GATCGTTCTTTATTTTCTTAGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTT
8170433 GTGGTATTAT
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
140 97 0.93
141 7 0.07
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.56
Consensus pattern (141 bp):
TTTTATTTTTTGACCTATAGTGTCATCCAGATCATATTTATTTTTCAACTTATGGTATTGTCCCG
ATCGTTCTTTATTTTCTTAGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTTATGATGTT
GTCCCAAATTA
Found at i:8170456 original size:140 final size:141
Alignment explanation
Indices: 8170170--8170535 Score: 339
Period size: 140 Copynumber: 2.6 Consensus size: 141
8170160 TTATAGTGTT
* * * * * *
8170170 TTTTTATTTTTTGACTTATAGTGTTATCCCGATCATTTTTATTTTTTGACTTATGGTATTGTTCT
1 TTTTT-TTTTTTGACTTGTAGTGTTATCCAG-TCATATTTATTTTTCGACTTATGGTTTTGTCCT
* * * * *
8170235 GGTCGTTCTTTATTTT-TTAATTTGTGGTGTTGTCTCGATCATTTTCATTTTTTGACTTATGATG
64 GATCGTTCTTTATTTTCTTAAGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTTATGATA
* *
8170299 TTGTCCCAAATTA
129 TTATCCCAAATCA
* * * *
8170312 -TTTTTTTTTTGACCTGTAGTGTCATCCTAGTCATATTTATTTTTCAACTTATGGTTTTGTCCCG
1 TTTTTTTTTTTGACTTGTAGTGTTATCC-AGTCATATTTATTTTTCGACTTATGGTTTTGTCCTG
* * *
8170376 ATCGTTCTTTATTTTCTT-AGTTGTGGTGTTGTCCCAATCATTTTTATTTTTTGACTTGTGGTAT
65 ATCGTTCTTTATTTTCTTAAGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTTATGATAT
*****
8170440 TAT-TTTGGTCA
130 TATCCCAAATCA
* * *
8170451 TTTTTTATTTTTCGACTTGT-GATGTTGTCCCGGTCATTCTTTATTTTTCGACTTATGGTATTT-
1 TTTTTT-TTTTT-GACTTGTAG-TGTTAT-CCAGTCA-TATTTATTTTTCGACTTATGGT-TTTG
* *
8170514 TCCTAATCATTCTTTATTTTCT
60 TCCTGATCGTTCTTTATTTTCT
8170536 AACTTATGAT
Statistics
Matches: 181, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
139 2 0.01
140 108 0.60
141 13 0.07
142 14 0.08
143 41 0.23
144 3 0.02
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (141 bp):
TTTTTTTTTTTGACTTGTAGTGTTATCCAGTCATATTTATTTTTCGACTTATGGTTTTGTCCTGA
TCGTTCTTTATTTTCTTAAGTTGTGGTGTTGTCCCAATCATTTTCATTTTTTGACTTATGATATT
ATCCCAAATCA
Found at i:8171192 original size:145 final size:145
Alignment explanation
Indices: 8170952--8171352 Score: 441
Period size: 145 Copynumber: 2.8 Consensus size: 145
8170942 GAGAAGGGCA
* * * * *
8170952 AAATTACCAAAATATCCTTATAGGGAGTATTTTCGTAATTTGACCTTTCCGAGC-TCATATTTTC
1 AAATTACCAAAATACCCTTATA-GGAGTATTTTTGTAATTTGACTTTTTCGAGCTTGA-ATTTTC
* * * *
8171016 ATGAAACTTTTTAAATCTCAAATTT-ATAATATTTCATGATTTTTGGTGCATTTGAAGTCACAAC
64 ACGAAACTTTTCAAATCT-AAATTTCATAATATTTCATGATTTTTGGTGCATCTGAAATCACAAC
* *
8171080 AGTACCTTGAA-AAGTATG
128 AATACC-TCAAGAAGTATG
* * *
8171098 AAATTATCAAAATACCCTTATAGGAGTATTTTTGTTATTTGACTTTTTCGAGCTTGAAATTTCAC
1 AAATTACCAAAATACCCTTATAGGAGTATTTTTGTAATTTGACTTTTTCGAGCTTGAATTTTCAC
* * * * * * *
8171163 AAAACCTTTCATATCTTAATTTCATAATATTTCATGATTTTTGGTTCATCTGAAATTATAACAAT
66 GAAACTTTTCAAATCTAAATTTCATAATATTTCATGATTTTTGGTGCATCTGAAATCACAACAAT
*
8171228 ACCTCAAGAAGTGTG
131 ACCTCAAGAAGTATG
* * * * * ** *
8171243 AAATTACCAAAATACCTTTGTAGGGGTATTTTTGTGATTT-AGTTTTTTTTAGCTCGAATTTTCA
1 AAATTACCAAAATACCCTTATAGGAGTATTTTTGTAATTTGA-CTTTTTCGAGCTTGAATTTTCA
* *
8171307 CGAAACTTTTCAAATCTCAATTTCATAATATTTCATAATTTTTGGT
65 CGAAACTTTTCAAATCTAAATTTCATAATATTTCATGATTTTTGGT
8171353 ACTTTAAAAT
Statistics
Matches: 214, Mismatches: 37, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
144 9 0.04
145 183 0.86
146 22 0.10
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (145 bp):
AAATTACCAAAATACCCTTATAGGAGTATTTTTGTAATTTGACTTTTTCGAGCTTGAATTTTCAC
GAAACTTTTCAAATCTAAATTTCATAATATTTCATGATTTTTGGTGCATCTGAAATCACAACAAT
ACCTCAAGAAGTATG
Found at i:8179494 original size:21 final size:20
Alignment explanation
Indices: 8179464--8179502 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8179454 ATAATCTTTA
8179464 AAAAATTATTATACAAAATACG
1 AAAAATTATTA-A-AAAATACG
8179486 AAAAA-TATTAAAAAATA
1 AAAAATTATTAAAAAATA
8179503 TGTAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 5 0.29
22 5 0.29
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAATTATTAAAAAATACG
Found at i:8179607 original size:49 final size:49
Alignment explanation
Indices: 8179554--8179657 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 49
8179544 CATATAAATG
* * *
8179554 AAATTGTAATAACAATAAAATATACCTTTAAAAATTTTA-TAAACAAAAA
1 AAATTGCAATAACAATAAAATATACCTTTAAAAA-GTTACTAAAAAAAAA
* ** * *
8179603 AAATTACAATAGTAATATAATATATCTTTAAAAAGTTACTAAAAAAAAA
1 AAATTGCAATAACAATAAAATATACCTTTAAAAAGTTACTAAAAAAAAA
8179652 AAATTG
1 AAATTG
8179658 ATGTATAACA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
48 3 0.07
49 42 0.93
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.31
Consensus pattern (49 bp):
AAATTGCAATAACAATAAAATATACCTTTAAAAAGTTACTAAAAAAAAA
Found at i:8180575 original size:18 final size:21
Alignment explanation
Indices: 8180546--8180591 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8180536 TTATCATTGT
8180546 TAATGAACTAC-TT-ATTTAAA
1 TAATG-ACTACTTTAATTTAAA
8180566 -AATGACTACTTTAATTTAAA
1 TAATGACTACTTTAATTTAAA
8180586 TAATGA
1 TAATGA
8180592 GTCTTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 5 0.22
19 6 0.26
20 7 0.30
21 5 0.22
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (21 bp):
TAATGACTACTTTAATTTAAA
Found at i:8181609 original size:3 final size:3
Alignment explanation
Indices: 8181603--8181634 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8181593 ATTATATCTT
8181603 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8181635 CTGTATTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8184143 original size:25 final size:25
Alignment explanation
Indices: 8184115--8184165 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8184105 CAGAAGTCTC
8184115 TCTGTGTTATTTTAGAGAAACTAAT
1 TCTGTGTTATTTTAGAGAAACTAAT
8184140 TCTGTGTTATTTTAGAGAAACTAAT
1 TCTGTGTTATTTTAGAGAAACTAAT
8184165 T
1 T
8184166 TTTAAGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (25 bp):
TCTGTGTTATTTTAGAGAAACTAAT
Found at i:8184194 original size:17 final size:17
Alignment explanation
Indices: 8184172--8184205 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8184162 AATTTTTAAG
8184172 TTGAATCTTT-TATGGGC
1 TTGAAT-TTTCTATGGGC
8184189 TTGAATTTTCTATGGGC
1 TTGAATTTTCTATGGGC
8184206 AGAAAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.47
Consensus pattern (17 bp):
TTGAATTTTCTATGGGC
Found at i:8200937 original size:2 final size:2
Alignment explanation
Indices: 8200930--8200958 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8200920 ATGTCAATGT
8200930 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8200959 GTAGATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.