Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 33 of 160
Found at i:8202404 original size:13 final size:14
Alignment explanation
Indices: 8202388--8202425 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
8202378 AAACTACTAT
8202388 AAAAATATCATAG-
1 AAAAATATCATAGC
8202401 AAAAATATCAT-GC
1 AAAAATATCATAGC
*
8202414 AATAATATCATA
1 AAAAATATCATA
8202426 ATTAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 1 0.05
13 21 0.95
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.26
Consensus pattern (14 bp):
AAAAATATCATAGC
Found at i:8202463 original size:14 final size:14
Alignment explanation
Indices: 8202444--8202470 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8202434 ATGCAAAGAT
8202444 CATGCAAAAATAAC
1 CATGCAAAAATAAC
8202458 CATGCAAAAATAA
1 CATGCAAAAATAA
8202471 ATCATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.19, G:0.07, T:0.15
Consensus pattern (14 bp):
CATGCAAAAATAAC
Found at i:8202594 original size:36 final size:36
Alignment explanation
Indices: 8202554--8202627 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
8202544 AGTAATCATG
*
8202554 TAAAAAGATAATGCAAATGAATATAATAAAAAATAT
1 TAAAAAGATAATGCAAATAAATATAATAAAAAATAT
*
8202590 TAAAAATATAATGCAAATAAATATAATAAAAAATAT
1 TAAAAAGATAATGCAAATAAATATAATAAAAAATAT
8202626 TA
1 TA
8202628 TCTAATTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (36 bp):
TAAAAAGATAATGCAAATAAATATAATAAAAAATAT
Found at i:8206430 original size:11 final size:11
Alignment explanation
Indices: 8206411--8206478 Score: 66
Period size: 11 Copynumber: 5.7 Consensus size: 11
8206401 AGCTAACTAA
8206411 AATAAAAAAAT
1 AATAAAAAAAT
*
8206422 AATACAAAAAT
1 AATAAAAAAAT
8206433 AATAAAATAAAAT
1 AAT-AAA-AAAAT
8206446 AAATAAATCAAAAT
1 -AATAAA--AAAAT
8206460 AATTAAAAAAAT
1 AA-TAAAAAAAT
8206472 AA-AAAAA
1 AATAAAAA
8206479 TTATAAATGG
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
10 5 0.10
11 13 0.27
12 9 0.18
13 10 0.20
14 12 0.24
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (11 bp):
AATAAAAAAAT
Found at i:8206433 original size:19 final size:18
Alignment explanation
Indices: 8206409--8206485 Score: 75
Period size: 19 Copynumber: 4.1 Consensus size: 18
8206399 ATAGCTAACT
8206409 AAAATAAAAAAATAATACA
1 AAAATAAAAAAATAATA-A
*
8206428 AAAATAATAAAATAA-AA
1 AAAATAAAAAAATAATAA
*
8206445 TAAATAAATCAAAATAATTAAA
1 AAAATAAA--AAAATAA-T-AA
*
8206467 AAAATAAAAAAATTATAA
1 AAAATAAAAAAATAATAA
8206485 A
1 A
8206486 TGGTTTGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
17 7 0.15
18 4 0.08
19 22 0.46
20 6 0.12
22 9 0.19
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAAAAAATAATAA
Found at i:8206443 original size:27 final size:30
Alignment explanation
Indices: 8206408--8206479 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 30
8206398 AATAGCTAAC
8206408 TAAAATAAAAAAAT-AAT-ACAAA-AA-TAA
1 TAAAATAAAAAAATAAATCA-AAATAATTAA
8206435 TAAAATAAAATAAATAAATCAAAATAATTAA
1 TAAAATAAAA-AAATAAATCAAAATAATTAA
*
8206466 AAAAATAAAAAAAT
1 TAAAATAAAAAAAT
8206480 TATAAATGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 10 0.26
28 4 0.10
29 6 0.15
30 7 0.18
31 12 0.31
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (30 bp):
TAAAATAAAAAAATAAATCAAAATAATTAA
Found at i:8208791 original size:21 final size:22
Alignment explanation
Indices: 8208767--8208813 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
8208757 TGAATATAGT
*
8208767 TAGTGTT-AATGAGATTTGAAA
1 TAGTGTTAAAAGAGATTTGAAA
**
8208788 TAGT-TTAAAAGAGATTTTCAA
1 TAGTGTTAAAAGAGATTTGAAA
8208809 TAGTG
1 TAGTG
8208814 AGTGTTCTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.38
Consensus pattern (22 bp):
TAGTGTTAAAAGAGATTTGAAA
Found at i:8230117 original size:104 final size:103
Alignment explanation
Indices: 8229957--8230242 Score: 317
Period size: 104 Copynumber: 2.7 Consensus size: 103
8229947 GGCCCGAAAG
* * * *
8229957 TCTTACAAATCTCGATATCTTTGAATGCT-TCTTTCATCAAAGGCATTGAAAATTTAAAAATTTA
1 TCTTACAAATCTCAATATCTTTGAATGCTCTC-GT-ATCAGAGGCATTGAAACTTTAAAAATTTA
* * *
8230021 AAATGTTTTGCTCGAGGATCTTAGAGATTATG-CTAGGATA
64 AAATGTTTTGCTCGAAGATCTTAGAGATTATGCCT-GAAGA
* *
8230061 TTTTACAAATCTCAATATCTATGAATGCTCATCGTATCAGAGGCATTGAAACTTTAAAAATTTAA
1 TCTTACAAATCTCAATATCTTTGAATGCTC-TCGTATCAGAGGCATTGAAACTTTAAAAATTTAA
** *
8230126 AACATTTTGC-CAGAAGATCTTAGAGATTATGCCTGAAGG
65 AATGTTTTGCTC-GAAGATCTTAGAGATTATGCCTGAAGA
* * * * ** *
8230165 TCTTACAAATCTCAACATTTTTAAATGCTCTTTGTATTTGCGGCATTGAAACTTTAAAAATTTAA
1 TCTTACAAATCTCAATATCTTTGAATGCTC-TCGTATCAGAGGCATTGAAACTTTAAAAATTTAA
*
8230230 AATGTTTTACTCG
65 AATGTTTTGCTCG
8230243 GAGGTTTTAC
Statistics
Matches: 152, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
103 1 0.01
104 145 0.95
105 4 0.03
106 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (103 bp):
TCTTACAAATCTCAATATCTTTGAATGCTCTCGTATCAGAGGCATTGAAACTTTAAAAATTTAAA
ATGTTTTGCTCGAAGATCTTAGAGATTATGCCTGAAGA
Found at i:8230291 original size:22 final size:22
Alignment explanation
Indices: 8230244--8230303 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
8230234 TTTTACTCGG
* *
8230244 AGGTTTTACAAATTATACCTAG
1 AGGTTTTAAAAATTATACCTAA
8230266 AGGTTTTAAAAATTATA-CTCAA
1 AGGTTTTAAAAATTATACCT-AA
* *
8230288 AGGTCTTAAAGATTAT
1 AGGTTTTAAAAATTAT
8230304 GCTCGGAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 2 0.06
22 31 0.94
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (22 bp):
AGGTTTTAAAAATTATACCTAA
Found at i:8230313 original size:22 final size:22
Alignment explanation
Indices: 8230237--8230313 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
8230227 TAAAATGTTT
* * *
8230237 TACTCGGAGGTTTTACAAATTA
1 TACTCAGAGGTCTTAAAAATTA
*
8230259 TAC-CTAGAGGTTTTAAAAATTA
1 TACTC-AGAGGTCTTAAAAATTA
* *
8230281 TACTCAAAGGTCTTAAAGATTA
1 TACTCAGAGGTCTTAAAAATTA
* *
8230303 TGCTCGGAGGT
1 TACTCAGAGGT
8230314 TCTGCAAATC
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.02
22 43 0.96
23 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (22 bp):
TACTCAGAGGTCTTAAAAATTA
Found at i:8230463 original size:104 final size:104
Alignment explanation
Indices: 8230283--8230513 Score: 270
Period size: 104 Copynumber: 2.2 Consensus size: 104
8230273 AAAAATTATA
* * * * * *
8230283 CTCAAAGGTCTTAAAGATTATGCTCGGAGGTTCTGCAAATCTCGATATTTTTGAATGCTTCTCGA
1 CTCAAAGGTCTTAAAGATTATGCTCAGAGGTTCTACAAATCTCAACATCTTTGAATGCTCCTCGA
8230348 ATCAAAGGCATTGAAACTTTAAAAATTTAAAATGTTTTC
66 ATCAAAGGCATTGAAACTTTAAAAATTTAAAATGTTTTC
* * * * *
8230387 CTCAAAGGTTTTAGAGATTATGCTTAGAGGTGT-TATAAATCTCAACATCTTTGAATGCTCCTTG
1 CTCAAAGGTCTTAAAGATTATGCTCAGAGGT-TCTACAAATCTCAACATCTTTGAATGCTCCTCG
* * * * *
8230451 TATTAAAGGCATTGAAATTTTGAAAATTTAAAATGTTTTG
65 AATCAAAGGCATTGAAACTTTAAAAATTTAAAATGTTTTC
8230491 C-CATAAGGTCTTACAA-ATTATGC
1 CTCA-AAGGTCTTA-AAGATTATGC
8230514 CCGAAGCTCT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
103 2 0.02
104 102 0.96
105 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (104 bp):
CTCAAAGGTCTTAAAGATTATGCTCAGAGGTTCTACAAATCTCAACATCTTTGAATGCTCCTCGA
ATCAAAGGCATTGAAACTTTAAAAATTTAAAATGTTTTC
Found at i:8230507 original size:252 final size:252
Alignment explanation
Indices: 8230039--8230511 Score: 603
Period size: 252 Copynumber: 1.9 Consensus size: 252
8230029 TGCTCGAGGA
* * * * *
8230039 TCTTAGAGATTATGCTAGGATATTTTACAAATCTCAATATCTATGAATGCTCATCGTATCAGAGG
1 TCTTAAAGATTATGCTAGGAGATTCTACAAATCTCAATATCTATGAATGCTCATCGAATCAAAGG
*
8230104 CATTGAAACTTTAAAAATTTAAAACATTTTGCCAGAAGATCTTAGAGATTATGCCTGAAGGTCTT
66 CATTGAAACTTTAAAAATTTAAAACATTTTCCCAGAAGATCTTAGAGATTATGCCTGAAGGTCTT
* * ***
8230169 ACAAATCTCAACATTTTTAAATGCTCTTTGTATTTGCGGCATTGAAACTTTAAAAATTTAAAATG
131 ACAAATCTCAACATCTTTAAATGCTCCTTGTATTAAAGGCATTGAAACTTTAAAAATTTAAAATG
* *
8230234 TTTTACTCGGAGGTTTTACAAATTATACCTAGAGGTTTTAAAAATTATACTCAAAGG
196 TTTTACTCGAAGGTCTTACAAATTATACCTAGAGGTTTTAAAAATTATACTCAAAGG
* * * * * *
8230291 TCTTAAAGATTATGCTCGGAGGTTCTGCAAATCTCGATATTTTTGAATGCTTC-TCGAATCAAAG
1 TCTTAAAGATTATGCTAGGAGATTCTACAAATCTCAATATCTATGAATGC-TCATCGAATCAAAG
** * * *
8230355 GCATTGAAACTTTAAAAATTTAAAATGTTTTCCTCA-AAGGTTTTAGAGATTATG-CTTAGAGGT
65 GCATTGAAACTTTAAAAATTTAAAACATTTTCC-CAGAAGATCTTAGAGATTATGCCTGA-AGGT
* * * * *
8230418 GTTATAAATCTCAACATCTTTGAATGCTCCTTGTATTAAAGGCATTGAAATTTTGAAAATTTAAA
128 CTTACAAATCTCAACATCTTTAAATGCTCCTTGTATTAAAGGCATTGAAACTTTAAAAATTTAAA
* *
8230483 ATGTTTTGC-CATAAGGTCTTACAAATTAT
193 ATGTTTTACTC-GAAGGTCTTACAAATTAT
8230512 GCCCGAAGCT
Statistics
Matches: 186, Mismatches: 31, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
251 4 0.02
252 178 0.96
253 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (252 bp):
TCTTAAAGATTATGCTAGGAGATTCTACAAATCTCAATATCTATGAATGCTCATCGAATCAAAGG
CATTGAAACTTTAAAAATTTAAAACATTTTCCCAGAAGATCTTAGAGATTATGCCTGAAGGTCTT
ACAAATCTCAACATCTTTAAATGCTCCTTGTATTAAAGGCATTGAAACTTTAAAAATTTAAAATG
TTTTACTCGAAGGTCTTACAAATTATACCTAGAGGTTTTAAAAATTATACTCAAAGG
Found at i:8230638 original size:23 final size:23
Alignment explanation
Indices: 8230582--8230652 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
8230572 TGCTAGCTTT
** *
8230582 ACTGGGCTTAGTGTGCCAGCTAA
1 ACTGGGCTTAAAGTGCCAGTTAA
*
8230605 ACTGGGCTTAAAGTGTCAGTTAA
1 ACTGGGCTTAAAGTGCCAGTTAA
*
8230628 ACTGGGCTTAAAGTGCCAATTAA
1 ACTGGGCTTAAAGTGCCAGTTAA
8230651 AC
1 AC
8230653 AAGGTTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (23 bp):
ACTGGGCTTAAAGTGCCAGTTAA
Found at i:8230661 original size:23 final size:23
Alignment explanation
Indices: 8230609--8230683 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
8230599 AGCTAAACTG
* * **
8230609 GGCTTAAAGTGTCAGTTAAACTG
1 GGCTTAAAGTGCCAATTAAACAA
8230632 GGCTTAAAGTGCCAATTAAACAA
1 GGCTTAAAGTGCCAATTAAACAA
* * * * *
8230655 GGTTTAAAATGCCAACTAAGCTA
1 GGCTTAAAGTGCCAATTAAACAA
8230678 GGCTTA
1 GGCTTA
8230684 GGTGCCAGCT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (23 bp):
GGCTTAAAGTGCCAATTAAACAA
Found at i:8230769 original size:32 final size:31
Alignment explanation
Indices: 8230731--8230801 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
8230721 AACTAATCTG
* *
8230731 GGCTTAATTTGATCT-AGGTGCTAGCTAGACT
1 GGCTTAACTTGATCTGA-ATGCTAGCTAGACT
8230762 GGACTTAACTTGATCTGAATGCTAGCTAGACT
1 GG-CTTAACTTGATCTGAATGCTAGCTAGACT
8230794 AGGCTTAA
1 -GGCTTAA
8230802 AATGTCATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 2 0.06
32 30 0.86
33 3 0.09
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (31 bp):
GGCTTAACTTGATCTGAATGCTAGCTAGACT
Found at i:8232833 original size:141 final size:134
Alignment explanation
Indices: 8232541--8232841 Score: 317
Period size: 135 Copynumber: 2.2 Consensus size: 134
8232531 AAAAGTCATT
* * *
8232541 TGTCTTTCTTTCTTTACTC---TTTCTTTTTTGGAAACATTTAACTTCAACTTTAGCATTCTACT
1 TGTCTTTCTTTCTTTACTCTTTTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACT
** * *
8232603 TTCTCGAATTTTATCTTTTTTTTTAAGCTTCATTCATTTTTTACCCCAAATCCTCATTTTCTAAG
66 TTCTCGAATTTTATCTTTTTACTTAAGCTTCATTCACTTTTTACCCCAAATCCTCATCTTCTAAG
*
8232668 TGCA
131 TACA
*
8232672 TGTCTCTCTTTCTTTACTCTTTTTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTAC
1 TGTCTTTCTTTCTTTACTC-TTTTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTAC
* ** * * *
8232737 TTTCTTGAATTTT-TACTTGGGATTCTAACTTAAGCTAT-ATTCACTTTTTGTCTCGAATTCTCA
65 TTTCTCGAATTTTAT-CTT----TT-T-ACTTAAGCT-TCATTCACTTTTTACCCCAAATCCTCA
8232800 TCTTC-AATGTACA
122 TCTTCTAA-GTACA
* *
8232813 TGTCTTTCTTTCTTTGCTCTTTCTTTTTT
1 TGTCTTTCTTTCTTTACTCTTTTTTTTTT
8232842 GCTCTTTTTT
Statistics
Matches: 139, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
131 18 0.13
134 1 0.01
135 54 0.39
139 2 0.01
140 12 0.09
141 51 0.37
142 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.07, T:0.53
Consensus pattern (134 bp):
TGTCTTTCTTTCTTTACTCTTTTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACT
TTCTCGAATTTTATCTTTTTACTTAAGCTTCATTCACTTTTTACCCCAAATCCTCATCTTCTAAG
TACA
Found at i:8232853 original size:12 final size:14
Alignment explanation
Indices: 8232815--8232854 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
8232805 AATGTACATG
8232815 TCTTTCTTTCTTTGC
1 TCTTTCTTT-TTTGC
8232830 TCTTTCTTTTTTGC
1 TCTTTCTTTTTTGC
8232844 TCTTT-TTTTTT
1 TCTTTCTTTTTT
8232855 CTTTCCCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 9 0.36
ACGTcount: A:0.00, C:0.20, G:0.05, T:0.75
Consensus pattern (14 bp):
TCTTTCTTTTTTGC
Found at i:8239235 original size:28 final size:28
Alignment explanation
Indices: 8239200--8239266 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
8239190 TTAATTTTCG
*
8239200 TATTTAAAAATTA-ATTTTCTTATTTTT
1 TATTTAAAAAATATATTTTCTTATTTTT
* *
8239227 TATTGTAAAAAATATTTTTTTTTA-TTTT
1 TATT-TAAAAAATATATTTTCTTATTTTT
8239255 TAGTTTAAAAAA
1 TA-TTTAAAAAA
8239267 AAATAAGAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.12
28 21 0.62
29 9 0.26
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (28 bp):
TATTTAAAAAATATATTTTCTTATTTTT
Found at i:8240525 original size:16 final size:16
Alignment explanation
Indices: 8240506--8240541 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8240496 ATTTTCTCCA
*
8240506 TTTTTTTCTTTCTTTCT
1 TTTTTTTC-TTCTCTCT
8240523 TTTTTTTCTTCTCTCT
1 TTTTTTTCTTCTCTCT
8240539 TTT
1 TTT
8240542 CTCTTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTTCTTCTCTCT
Found at i:8240529 original size:20 final size:22
Alignment explanation
Indices: 8240506--8240555 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 22
8240496 ATTTTCTCCA
*
8240506 TTTTTTTCTTTC-TTTCT-TTT
1 TTTTTTTCTCTCTTTTCTCTTT
*
8240526 TTTTCTTCTCTCTTTTCTCTTT
1 TTTTTTTCTCTCTTTTCTCTTT
8240548 TTCTTTTT
1 TT-TTTTT
8240556 TGGTTCGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 5 0.21
23 4 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTTCTCTCTTTTCTCTTT
Found at i:8240530 original size:29 final size:29
Alignment explanation
Indices: 8240492--8240556 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
8240482 GCCATTGAAG
* *
8240492 CTTTATTTTCTCCAT-TTTTTTCT-TTCTTT
1 CTTTTTTTTCTCC-TCTCTTTTCTCTT-TTT
*
8240521 CTTTTTTTTCTTCTCTCTTTTCTCTTTTT
1 CTTTTTTTTCTCCTCTCTTTTCTCTTTTT
8240550 CTTTTTT
1 CTTTTTT
8240557 GGTTCGATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 1 0.03
29 28 0.90
30 2 0.06
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (29 bp):
CTTTTTTTTCTCCTCTCTTTTCTCTTTTT
Found at i:8240744 original size:26 final size:26
Alignment explanation
Indices: 8240688--8240750 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 26
8240678 TCATTTCTCT
8240688 ATTTTTTTTTGTATAAACTGAAATTG
1 ATTTTTTTTTGTATAAACTGAAATTG
*
8240714 A-TTTTTTTTGTATAAATTGAAATTG
1 ATTTTTTTTTGTATAAACTGAAATTG
8240739 ATTTTTTTTTGT
1 ATTTTTTTTTGT
8240751 TTTTTTTCGC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 24 0.69
26 11 0.31
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (26 bp):
ATTTTTTTTTGTATAAACTGAAATTG
Found at i:8245124 original size:26 final size:26
Alignment explanation
Indices: 8245078--8245137 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
8245068 GACCTTATAT
*
8245078 GGGATTAATAATATACTTATCCATGA
1 GGGATTAATAATATACCTATCCATGA
* *
8245104 GGGATTAATGATGTACCTATCCATGA
1 GGGATTAATAATATACCTATCCATGA
*
8245130 GGAATTAA
1 GGGATTAA
8245138 GTTACAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (26 bp):
GGGATTAATAATATACCTATCCATGA
Found at i:8246470 original size:98 final size:98
Alignment explanation
Indices: 8246301--8246485 Score: 237
Period size: 98 Copynumber: 1.9 Consensus size: 98
8246291 TCAGTTAACT
* * * *
8246301 CTTAATGTTATTGAGGGTAGAATTATATCTAGATCTCATGCTAATGATAAAATCTTCATTTCAAA
1 CTTAATGTTATTGAGGATAAAATTATATATAGAACTCATGCTAATGATAAAATCTTCATTTCAAA
8246366 AATTATTCTAACTATTAAACATCATAAATAGCC
66 AATTATTCTAACTATTAAACATCATAAATAGCC
* * * * * *
8246399 CTTAATGTTATTTAGGATAAAATTATATATGGAACTCATGTTGATGATAAAGTTTTCATTAT-AA
1 CTTAATGTTATTGAGGATAAAATTATATATAGAACTCATGCTAATGATAAAATCTTCATT-TCAA
* * *
8246463 GAATTATTTTGACTATTAAACAT
65 AAATTATTCTAACTATTAAACAT
8246486 TAGAATTGGC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
98 72 0.99
99 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (98 bp):
CTTAATGTTATTGAGGATAAAATTATATATAGAACTCATGCTAATGATAAAATCTTCATTTCAAA
AATTATTCTAACTATTAAACATCATAAATAGCC
Found at i:8252743 original size:25 final size:24
Alignment explanation
Indices: 8252707--8252753 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
8252697 TTATATTTTA
*
8252707 AATAAAATAATATTTAATTTTTAGT
1 AATAAAATAATA-ATAATTTTTAGT
8252732 AATATAAA-AATAATAATTTTTA
1 AATA-AAATAATAATAATTTTTA
8252754 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 8 0.40
26 3 0.15
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
AATAAAATAATAATAATTTTTAGT
Found at i:8261222 original size:31 final size:31
Alignment explanation
Indices: 8261186--8261258 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
8261176 TTAAACACTG
* * *
8261186 AAAATAAGGAAT-ATTTTATACTAAAATATAA
1 AAAATAAAGAATCATATTATAATAAAA-ATAA
*
8261217 AAAATAAAG-ATCATATTATAATTAAAATAA
1 AAAATAAAGAATCATATTATAATAAAAATAA
8261247 AAAATAAAGAAT
1 AAAATAAAGAAT
8261259 TCAAGATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 15 0.42
31 21 0.58
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (31 bp):
AAAATAAAGAATCATATTATAATAAAAATAA
Found at i:8261268 original size:30 final size:29
Alignment explanation
Indices: 8261213--8261275 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
8261203 ATACTAAAAT
*
8261213 ATAAAAAATAAAGATCATATTATAATTAAA
1 ATAAAAAATAAAGATCATATGATAA-TAAA
8261243 ATAAAAAATAAAGAATTCA-A-GATAATAAA
1 ATAAAAAATAAAG-A-TCATATGATAATAAA
8261272 ATAA
1 ATAA
8261276 TACTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 8 0.27
30 17 0.57
31 2 0.07
32 3 0.10
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (29 bp):
ATAAAAAATAAAGATCATATGATAATAAA
Found at i:8262216 original size:33 final size:33
Alignment explanation
Indices: 8262178--8262243 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
8262168 ATTTAAGAGA
8262178 TTAAAAAGATGAAACATGTTTTACATTTGATTG
1 TTAAAAAGATGAAACATGTTTTACATTTGATTG
*
8262211 TTAAAAAGATGAAACATGTTTTATATTTGATTG
1 TTAAAAAGATGAAACATGTTTTACATTTGATTG
8262244 AGAAGACACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (33 bp):
TTAAAAAGATGAAACATGTTTTACATTTGATTG
Found at i:8269754 original size:2 final size:2
Alignment explanation
Indices: 8269747--8269771 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8269737 ATATTTGGAT
8269747 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8269772 GATTGATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8272622 original size:14 final size:14
Alignment explanation
Indices: 8272614--8272660 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
8272604 AATATTATTT
8272614 TTTAAATATAAATA
1 TTTAAATATAAATA
8272628 TTTAAATATATAATTA
1 TTTAAATATA-AA-TA
* *
8272644 TATAAATA-AAAAA
1 TTTAAATATAAATA
8272657 TTTA
1 TTTA
8272661 TTTAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 4 0.14
14 12 0.43
15 3 0.11
16 9 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAATATAAATA
Found at i:8273435 original size:33 final size:33
Alignment explanation
Indices: 8273360--8273435 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
8273350 ACATAAAAAT
*
8273360 AATTTTAATAATTTTAAATTATTTATTAACATA
1 AATTTTAATAATTTAAAATTATTTATTAACATA
*
8273393 AATAATTAATAATTTAAAATT-TTTATTATAC-TCA
1 AAT-TTTAATAATTTAAAATTATTTATTA-ACAT-A
8273427 AATTTTAAT
1 AATTTTAAT
8273436 TTAATGCCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
33 16 0.43
34 21 0.57
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (33 bp):
AATTTTAATAATTTAAAATTATTTATTAACATA
Found at i:8278877 original size:33 final size:32
Alignment explanation
Indices: 8278821--8278891 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
8278811 TTTATTTTTG
* *
8278821 GCAAAA-AACGAATAGAAAGCAAAAGGCAAA-A
1 GCAAAAGAATGAATAGAAAACAAAA-GCAAATA
*
8278852 GCTAAAAGAATGAATATAAAACAAAAGCAAATA
1 GC-AAAAGAATGAATAGAAAACAAAAGCAAATA
8278885 GCAAAAG
1 GCAAAAG
8278892 TATCAACCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 2 0.06
32 14 0.41
33 18 0.53
ACGTcount: A:0.63, C:0.11, G:0.17, T:0.08
Consensus pattern (32 bp):
GCAAAAGAATGAATAGAAAACAAAAGCAAATA
Found at i:8280774 original size:37 final size:37
Alignment explanation
Indices: 8280733--8280804 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
8280723 TCAAGTAATC
* * **
8280733 ATTCAGTAAATCTGAAGTTTGAATTTCAAAATTTGAT
1 ATTCAATAAATCTGAAGATTGAATCCCAAAATTTGAT
*
8280770 ATTCAATAAATTTGAAGATTGAATCCCAAAATTTG
1 ATTCAATAAATCTGAAGATTGAATCCCAAAATTTG
8280805 TAATTTCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (37 bp):
ATTCAATAAATCTGAAGATTGAATCCCAAAATTTGAT
Found at i:8285506 original size:68 final size:68
Alignment explanation
Indices: 8285397--8285528 Score: 201
Period size: 68 Copynumber: 1.9 Consensus size: 68
8285387 TGATACTCCG
** *
8285397 AATAAGTCTTCGGTGCATCCAAGAATGAATGGAAGAGGTTGATTGATGATGATAATTCAAATTGT
1 AATAAGTCTTCGGCACATCCAAGAATGAATAGAAGAGGTTGATTGATGATGATAATTCAAATTGT
8285462 GTT
66 GTT
* * * *
8285465 AATAAGTCTTTGGCACATTCAATAATGAATAGAAGAGGTTGATTGATGGTGATAATTCAAATTG
1 AATAAGTCTTCGGCACATCCAAGAATGAATAGAAGAGGTTGATTGATGATGATAATTCAAATTG
8285529 AGTTTGGTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (68 bp):
AATAAGTCTTCGGCACATCCAAGAATGAATAGAAGAGGTTGATTGATGATGATAATTCAAATTGT
GTT
Found at i:8287275 original size:2 final size:2
Alignment explanation
Indices: 8287268--8287292 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8287258 TTTTGAGAGT
8287268 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8287293 CAAAAGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8290076 original size:18 final size:18
Alignment explanation
Indices: 8290053--8290088 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8290043 TTTCTTCTTT
8290053 TTTTTTA-ATTAATTTTTA
1 TTTTTTATA-TAATTTTTA
8290071 TTTTTTATATAATTTTTA
1 TTTTTTATATAATTTTTA
8290089 GAGTAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTATATAATTTTTA
Found at i:8290488 original size:25 final size:23
Alignment explanation
Indices: 8290459--8290524 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 23
8290449 TTTTAATATG
*
8290459 ATTTTAATTTTGATTTTGCTTTTA
1 ATTTTAATTTTGATTTTG-GTTTA
8290483 ATTTTTAATTTTGATTTTTGGTTTA
1 A-TTTTAATTTTGA-TTTTGGTTTA
*
8290508 ATTTTAATTTTAATTTT
1 ATTTTAATTTTGATTTT
8290525 AGTCAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
23 4 0.11
24 12 0.32
25 17 0.45
26 5 0.13
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.68
Consensus pattern (23 bp):
ATTTTAATTTTGATTTTGGTTTA
Found at i:8290513 original size:6 final size:6
Alignment explanation
Indices: 8290459--8290525 Score: 62
Period size: 6 Copynumber: 11.0 Consensus size: 6
8290449 TTTTAATATG
* * * * * **
8290459 ATTTTA ATTTTG ATTTTG CTTTTA ATTTTTA ATTTTG ATTTTT GGTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA A-TTTTA ATTTTA ATTTTA ATTTTA
8290508 ATTTTA ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA
8290526 GTCAAAAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
6 43 0.88
7 6 0.12
ACGTcount: A:0.24, C:0.01, G:0.07, T:0.67
Consensus pattern (6 bp):
ATTTTA
Found at i:8291337 original size:19 final size:19
Alignment explanation
Indices: 8291313--8291353 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8291303 ATGGGTTTTC
8291313 TTTGAATTTCCTGGCACCA
1 TTTGAATTTCCTGGCACCA
**
8291332 TTTGAATTTTTTGGCACCA
1 TTTGAATTTCCTGGCACCA
8291351 TTT
1 TTT
8291354 TTTGTATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (19 bp):
TTTGAATTTCCTGGCACCA
Found at i:8291628 original size:6 final size:6
Alignment explanation
Indices: 8291610--8291687 Score: 58
Period size: 6 Copynumber: 13.3 Consensus size: 6
8291600 TTTGTTTTGG
* * *
8291610 TTTTA- TTTGAT TTTTAT TTTCT-G TTTTGT -TTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT
*
8291656 TTTCTA- TTTGAT TTTTAT TTTTCA- TTTTAT TT
1 TTT-TAT TTTTAT TTTTAT TTTT-AT TTTTAT TT
8291688 AATTTTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
5 11 0.19
6 43 0.74
7 4 0.07
ACGTcount: A:0.14, C:0.04, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:8291629 original size:29 final size:29
Alignment explanation
Indices: 8291597--8291660 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
8291587 TTTTTTGATT
*
8291597 TTTTTTGTTTTGGTTTTA-TTTGATTTTTA
1 TTTTCTGTTTT-GTTTTATTTTGATTTTTA
*
8291626 TTTTCTGTTTTGTTTTATTTTTATTTTTA
1 TTTTCTGTTTTGTTTTATTTTGATTTTTA
8291655 TTTTCT
1 TTTTCT
8291661 ATTTGATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.78
Consensus pattern (29 bp):
TTTTCTGTTTTGTTTTATTTTGATTTTTA
Found at i:8291635 original size:23 final size:23
Alignment explanation
Indices: 8291585--8291716 Score: 99
Period size: 23 Copynumber: 5.6 Consensus size: 23
8291575 TATTCCTTTT
* * *
8291585 TTTTTTTTGATTTTTTTTGTTTTGG
1 TTTTATTTGA-TTTTTAT-TTTTAG
8291610 TTTTATTTGATTTTTATTTTCT-G
1 TTTTATTTGATTTTTATTTT-TAG
* * *
8291633 TTTTGTTTTATTTTTATTTTTAT
1 TTTTATTTGATTTTTATTTTTAG
8291656 TTTCTATTTGATTTTTATTTTTCA-
1 TTT-TATTTGATTTTTATTTTT-AG
* *
8291680 TTTTATTT-AATTTTATCTTTTTG
1 TTTTATTTGATTTTTAT-TTTTAG
**
8291703 TTTGGTTTGATTTT
1 TTTTATTTGATTTT
8291717 CTGTTAATTT
Statistics
Matches: 88, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
22 8 0.09
23 40 0.45
24 30 0.34
25 10 0.11
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (23 bp):
TTTTATTTGATTTTTATTTTTAG
Found at i:8291653 original size:7 final size:6
Alignment explanation
Indices: 8291638--8291687 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
8291628 TTCTGTTTTG
*
8291638 TTTTAT TTTTAT TTTTAT TTTCTA- TTTGAT TTTTAT TTTTCA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTT-TAT TTTTAT TTTTAT TTTT-AT TTTTAT
8291686 TT
1 TT
8291688 AATTTTATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 2 0.05
6 33 0.87
7 3 0.08
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:8291670 original size:29 final size:29
Alignment explanation
Indices: 8291609--8291687 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 29
8291599 TTTTGTTTTG
* *
8291609 GTTTTA-TTTGATTTTTATTTTCTGTTTT
1 GTTTTATTTTTATTTTTATTTTCTGATTT
8291637 GTTTTATTTTTATTTTTATTTTCT-ATTT
1 GTTTTATTTTTATTTTTATTTTCTGATTT
8291665 GATTTTTATTTTTCA-TTTTATTT
1 G--TTTTATTTTT-ATTTTTATTT
8291688 AATTTTATCT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
28 10 0.22
29 16 0.36
30 18 0.40
31 1 0.02
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.76
Consensus pattern (29 bp):
GTTTTATTTTTATTTTTATTTTCTGATTT
Found at i:8291687 original size:12 final size:11
Alignment explanation
Indices: 8291610--8291676 Score: 71
Period size: 12 Copynumber: 5.8 Consensus size: 11
8291600 TTTGTTTTGG
*
8291610 TTTTATTTGAT
1 TTTTATTTTAT
*
8291621 TTTTATTTTCT
1 TTTTATTTTAT
*
8291632 GTTTTGTTTTAT
1 -TTTTATTTTAT
8291644 TTTTATTTTTAT
1 TTTTA-TTTTAT
*
8291656 TTTCTATTTGAT
1 TTT-TATTTTAT
8291668 TTTTATTTT
1 TTTTATTTT
8291677 TCATTTTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
11 18 0.39
12 26 0.57
13 2 0.04
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.78
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:8291687 original size:18 final size:18
Alignment explanation
Indices: 8291610--8291687 Score: 65
Period size: 18 Copynumber: 4.4 Consensus size: 18
8291600 TTTGTTTTGG
*
8291610 TTTTA-TTTGATTTT-TA
1 TTTTATTTTTATTTTCTA
* * *
8291626 TTTTCTGTTTTGTTTTAT-
1 TTTTAT-TTTTATTTTCTA
8291644 TTTTATTTTTATTTTCTA
1 TTTTATTTTTATTTTCTA
*
8291662 TTTGATTTTTATTTT-TCA
1 TTTTATTTTTATTTTCT-A
8291680 TTTTATTT
1 TTTTATTT
8291688 AATTTTATCT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
16 4 0.08
17 10 0.20
18 34 0.69
19 1 0.02
ACGTcount: A:0.14, C:0.04, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTATTTTCTA
Found at i:8291812 original size:16 final size:16
Alignment explanation
Indices: 8291788--8291862 Score: 51
Period size: 17 Copynumber: 4.5 Consensus size: 16
8291778 TTTTTTTATA
8291788 TTTATTTTGCATGATAT
1 TTTA-TTTGCATGATAT
* *
8291805 TTTATTTGTATGTCTAT
1 TTTATTTGCATG-ATAT
* *
8291822 TATATTTGCATGCTAT
1 TTTATTTGCATGATAT
* * *
8291838 TATAATTAGTATGATAT
1 T-TTATTTGCATGATAT
*
8291855 ATTATTTG
1 TTTATTTG
8291863 TTTGACTTTT
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
16 17 0.39
17 27 0.61
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (16 bp):
TTTATTTGCATGATAT
Found at i:8291822 original size:17 final size:16
Alignment explanation
Indices: 8291789--8291841 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
8291779 TTTTTTATAT
*
8291789 TTAT-TTTGCATGATA
1 TTATATTTGCATGCTA
* *
8291804 TTTTATTTGTATGTCTA
1 TTATATTTGCATG-CTA
8291821 TTATATTTGCATGCTA
1 TTATATTTGCATGCTA
8291837 TTATA
1 TTATA
8291842 ATTAGTATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 3 0.10
16 15 0.48
17 13 0.42
ACGTcount: A:0.25, C:0.08, G:0.11, T:0.57
Consensus pattern (16 bp):
TTATATTTGCATGCTA
Found at i:8292034 original size:28 final size:28
Alignment explanation
Indices: 8292002--8292084 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
8291992 TTATTGTATG
* *
8292002 ATAATATATTCAAGTATATGTTTTCATT
1 ATAATATATTCAAGTACATGTTTGCATT
*
8292030 ATAATATATTCAATTACATGTTTGCATT
1 ATAATATATTCAAGTACATGTTTGCATT
* * *
8292058 ATAATATATTTAATTACATTTTTGCAT
1 ATAATATATTCAAGTACATGTTTGCAT
8292085 GATTTTTAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.49
Consensus pattern (28 bp):
ATAATATATTCAAGTACATGTTTGCATT
Found at i:8293705 original size:19 final size:20
Alignment explanation
Indices: 8293681--8293718 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8293671 ATGAGACAGT
8293681 TATTATT-CTTGTAAATTTA
1 TATTATTCCTTGTAAATTTA
*
8293700 TATTATTCCTTGTATATTT
1 TATTATTCCTTGTAAATTT
8293719 TTGCATACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTATTCCTTGTAAATTTA
Found at i:8293742 original size:23 final size:23
Alignment explanation
Indices: 8293712--8293784 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
8293702 TTATTCCTTG
8293712 TATATTTTTGCATACTAACTTTT
1 TATATTTTTGCATACTAACTTTT
* * * *
8293735 TATA-TTTTG-TTA-T-TCCTTG
1 TATATTTTTGCATACTAACTTTT
*
8293754 TATATATTTGCATACTAACTTTT
1 TATATTTTTGCATACTAACTTTT
8293777 TATATTTT
1 TATATTTT
8293785 ATTATTCCTC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
19 7 0.19
20 5 0.14
21 4 0.11
22 6 0.17
23 14 0.39
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.59
Consensus pattern (23 bp):
TATATTTTTGCATACTAACTTTT
Found at i:8293764 original size:42 final size:42
Alignment explanation
Indices: 8293695--8293803 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 42
8293685 ATTCTTGTAA
*
8293695 ATTTATATTATTCCTTGTATATTTTTGCATACTAACTTTTTAT
1 ATTT-TATTATTCCTTGTATATATTTGCATACTAACTTTTTAT
*
8293738 ATTTTGTTATTCCTTGTATATATTTGCATACTAACTTTTTAT
1 ATTTTATTATTCCTTGTATATATTTGCATACTAACTTTTTAT
*
8293780 ATTTTATTATTCCTCGTATATATT
1 ATTTTATTATTCCTTGTATATATT
8293804 ATATTATGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
42 58 0.94
43 4 0.06
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.58
Consensus pattern (42 bp):
ATTTTATTATTCCTTGTATATATTTGCATACTAACTTTTTAT
Found at i:8293780 original size:21 final size:21
Alignment explanation
Indices: 8293718--8293783 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
8293708 CTTGTATATT
8293718 TTTGCATACTAACTTTTTATA
1 TTTGCATACTAACTTTTTATA
* ** *
8293739 TTTTG-TTA-TTCCTTGTATATA
1 -TTTGCATACTAACTT-TTTATA
8293760 TTTGCATACTAACTTTTTATA
1 TTTGCATACTAACTTTTTATA
8293781 TTT
1 TTT
8293784 TATTATTCCT
Statistics
Matches: 33, Mismatches: 8, Indels: 7
0.69 0.17 0.15
Matches are distributed among these distances:
20 8 0.24
21 17 0.52
22 8 0.24
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.58
Consensus pattern (21 bp):
TTTGCATACTAACTTTTTATA
Found at i:8303920 original size:91 final size:91
Alignment explanation
Indices: 8303755--8303947 Score: 248
Period size: 91 Copynumber: 2.1 Consensus size: 91
8303745 TTGAGATCCC
* * * * *
8303755 TATTTGTATTTAGATGATAAAGTGGATGAGATTACTTGATAGTGTATGATATTCATGACGATCGT
1 TATTTGAATTTAGATGATAAAGTGGATGAGATCACTTAATAGTGCATGATATTCATAACGATCGT
* *
8303820 GCATGATAACCCATGTTGATAAGACA
66 GCATAATAACCCATGTTGATAAGAAA
*
8303846 TATTTGAATTTAGATGATAAAGTGGATCG-GATCACTTAATAGTGCATGAT-GTCTATAA-GCAT
1 TATTTGAATTTAGATGATAAAGTGGAT-GAGATCACTTAATAGTGCATGATATTC-ATAACG-AT
* *
8303908 TGTGCCTAATAACCCATGTTGATAAGAAA
63 CGTGCATAATAACCCATGTTGATAAGAAA
8303937 TATTTGAATTT
1 TATTTGAATTT
8303948 GGATAATGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
90 3 0.03
91 85 0.96
92 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (91 bp):
TATTTGAATTTAGATGATAAAGTGGATGAGATCACTTAATAGTGCATGATATTCATAACGATCGT
GCATAATAACCCATGTTGATAAGAAA
Found at i:8304500 original size:42 final size:43
Alignment explanation
Indices: 8304440--8304584 Score: 150
Period size: 42 Copynumber: 3.3 Consensus size: 43
8304430 AGCATGATCT
* *
8304440 CATTTTAATTTTCAAAAGTTTCAAAGCCTTAGTTGTGATG-GAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGA-GAGAG
**
8304483 CA-TTTATTTTTCAAAAGTTTCAAATTCTCAGTTGTGAGAGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGAGAG
* * *
8304525 CATTTTTTCATTTTTTTCAAAAGTTTCAAAGCTTCAGTTATGGGAGAG
1 CA--TTTT-A--TTTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGAGAG
*
8304573 TATTTTATTTTT
1 CATTTTATTTTT
8304585 GTGAAAGTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 36 0.42
43 7 0.08
45 4 0.05
46 5 0.06
48 32 0.38
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (43 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGAGAG
Found at i:8304562 original size:48 final size:45
Alignment explanation
Indices: 8304442--8304578 Score: 133
Period size: 48 Copynumber: 3.0 Consensus size: 45
8304432 CATGATCTCA
*
8304442 TTTTAATTTTCAAAAGTTTCAAAGCCTT-AGTTGTGATG-GAGCA--
1 TTTTATTTTTCAAAAGTTTCAAAG-CTTCAGTTGTGA-GAGAGCATT
*
8304485 -TTTATTTTTCAAAAGTTTCAAA-TTCTCAGTTGTGAGAGAGCATT
1 TTTTATTTTTCAAAAGTTTCAAAGCT-TCAGTTGTGAGAGAGCATT
* * *
8304529 TTTTCATTTTTTTCAAAAGTTTCAAAGCTTCAGTTATGGGAGAGTATT
1 TTTT-A--TTTTTCAAAAGTTTCAAAGCTTCAGTTGTGAGAGAGCATT
8304577 TT
1 TT
8304579 ATTTTTGTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 34 0.44
45 3 0.04
46 1 0.01
48 36 0.46
49 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (45 bp):
TTTTATTTTTCAAAAGTTTCAAAGCTTCAGTTGTGAGAGAGCATT
Found at i:8304869 original size:6 final size:6
Alignment explanation
Indices: 8304850--8304921 Score: 56
Period size: 6 Copynumber: 11.8 Consensus size: 6
8304840 TTTTAATCTA
* * * * * * *
8304850 ATTTTA ATTCTG ATTTTG ATTCTA ATTTTG ATTTTG CTTTTA ATTTTA
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
8304898 ATTTT- ATTTTTG ATTTTTG ATTTT
1 ATTTTG A-TTTTG A-TTTTG ATTTT
8304922 TAATTTTTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
5 1 0.02
6 45 0.83
7 8 0.15
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.67
Consensus pattern (6 bp):
ATTTTG
Found at i:8304893 original size:18 final size:18
Alignment explanation
Indices: 8304850--8304921 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
8304840 TTTTAATCTA
*
8304850 ATTTTAATTCTGATTTTG
1 ATTTTAATTTTGATTTTG
*
8304868 ATTCTAATTTTGATTTTG
1 ATTTTAATTTTGATTTTG
* *
8304886 CTTTTAATTTTAATTTT-
1 ATTTTAATTTTGATTTTG
*
8304903 ATTTTTGATTTTTGATTTT
1 A-TTTT-AATTTTGATTTT
8304922 TAATTTTTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
18 34 0.77
19 10 0.23
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.67
Consensus pattern (18 bp):
ATTTTAATTTTGATTTTG
Found at i:8304928 original size:6 final size:6
Alignment explanation
Indices: 8304848--8304941 Score: 55
Period size: 6 Copynumber: 15.3 Consensus size: 6
8304838 ATTTTTAATC
* * * * * **
8304848 TAATTT TAATTC TGATTT TGATTC TAATTT TGATTT TGCTTT TAATTT
1 TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT
* * * *
8304896 TAATTT TATTTT TGATTTT TGATTTT TAATTTT TAAATT T-ATTT TA
1 TAATTT TAATTT T-AATTT T-AATTT TAA-TTT TAATTT TAATTT TA
8304942 GTCAAAAAGA
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
5 4 0.06
6 48 0.68
7 19 0.27
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.66
Consensus pattern (6 bp):
TAATTT
Found at i:8304935 original size:8 final size:7
Alignment explanation
Indices: 8304887--8304931 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
8304877 TTGATTTTGC
8304887 TTTTAA-
1 TTTTAAT
8304893 TTTTAA-
1 TTTTAAT
8304899 TTTT-AT
1 TTTTAAT
*
8304905 TTTTGAT
1 TTTTAAT
*
8304912 TTTTGAT
1 TTTTAAT
8304919 TTTTAAT
1 TTTTAAT
8304926 TTTTAA
1 TTTTAA
8304932 ATTTATTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
5 1 0.03
6 14 0.39
7 21 0.58
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:8306028 original size:5 final size:5
Alignment explanation
Indices: 8306018--8306095 Score: 57
Period size: 6 Copynumber: 13.8 Consensus size: 5
8306008 TTCGTTTTGG
*
8306018 TTTTA TTTTA TTTTTA TTTTCTA TTTTA TTTTA TTTTTA TTTTCTA TTTGA
1 TTTTA TTTTA -TTTTA -TTT-TA TTTTA TTTTA -TTTTA -TTT-TA TTTTA
*
8306069 TTTTTA TTTTT TGTTTGA TTTTA TTTT
1 -TTTTA TTTTA T-TTT-A TTTTA TTTT
8306096 CTATTAATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
5 23 0.37
6 34 0.55
7 5 0.08
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:8306031 original size:23 final size:23
Alignment explanation
Indices: 8306018--8306095 Score: 97
Period size: 23 Copynumber: 3.4 Consensus size: 23
8306008 TTCGTTTTGG
*
8306018 TTTTATTTTATTTTTATTTTCTA
1 TTTTATTTTATTTTTATTTTCGA
*
8306041 TTTTATTTTATTTTTATTTTCTA
1 TTTTATTTTATTTTTATTTTCGA
*
8306064 TTTGATTTTTATTTTT-TGTTT-GA
1 TTTTA-TTTTATTTTTAT-TTTCGA
8306087 TTTTATTTT
1 TTTTATTTT
8306096 CTATTAATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.08
23 33 0.66
24 13 0.26
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.78
Consensus pattern (23 bp):
TTTTATTTTATTTTTATTTTCGA
Found at i:8306042 original size:18 final size:18
Alignment explanation
Indices: 8306018--8306100 Score: 84
Period size: 17 Copynumber: 4.8 Consensus size: 18
8306008 TTCGTTTTGG
* *
8306018 TTTTATTTTAT-TTTTAT
1 TTTTATTTTCTATTTGAT
*
8306035 TTTCTA-TTT-TATTTTAT
1 TTT-TATTTTCTATTTGAT
8306052 TTTTATTTTCTATTTGAT
1 TTTTATTTTCTATTTGAT
* *
8306070 TTTTATTTTTTGTTTGA-
1 TTTTATTTTCTATTTGAT
8306087 TTTTATTTTCTATT
1 TTTTATTTTCTATT
8306101 AATGTGGATA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.05
17 30 0.53
18 24 0.42
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (18 bp):
TTTTATTTTCTATTTGAT
Found at i:8306072 original size:41 final size:42
Alignment explanation
Indices: 8306021--8306100 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
8306011 GTTTTGGTTT
* *
8306021 TATTTTATTTTTATTTTCTATTTTATTTTATTTT-TATTTTC
1 TATTTGATTTTTATTTTCTATTTGATTTTATTTTCTATTTTC
* *
8306062 TATTTGATTTTTATTTTTTGTTTGATTTTATTTTCTATT
1 TATTTGATTTTTATTTTCTATTTGATTTTATTTTCTATT
8306101 AATGTGGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 30 0.88
42 4 0.12
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (42 bp):
TATTTGATTTTTATTTTCTATTTGATTTTATTTTCTATTTTC
Found at i:8306185 original size:16 final size:17
Alignment explanation
Indices: 8306164--8306237 Score: 66
Period size: 16 Copynumber: 4.5 Consensus size: 17
8306154 TGATTTTTTT
8306164 ATATTTAT-TTTGCATG
1 ATATTTATATTTGCATG
8306180 ATATTT-TATTTGCATG
1 ATATTTATATTTGCATG
*
8306196 -TCTATTATATTTGCATG
1 ATAT-TTATATTTGCATG
* * *
8306213 CTA-TTATATTAGTATG
1 ATATTTATATTTGCATG
8306229 ATATATTAT
1 ATAT-TTAT
8306238 TCGTTTGACT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
15 3 0.06
16 29 0.62
17 10 0.21
18 5 0.11
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (17 bp):
ATATTTATATTTGCATG
Found at i:8306189 original size:17 final size:16
Alignment explanation
Indices: 8306167--8306222 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
8306157 TTTTTTTATA
8306167 TTTATTTTGCATGATAT
1 TTTATTTTGCATG-TAT
*
8306184 TTTA-TTTGCATGTCT
1 TTTATTTTGCATGTAT
*
8306199 ATTATATTTGCATGCTAT
1 TTTAT-TTTGCATG-TAT
*
8306217 TATATT
1 TTTATT
8306223 AGTATGATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 5 0.16
16 8 0.26
17 13 0.42
18 5 0.16
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.57
Consensus pattern (16 bp):
TTTATTTTGCATGTAT
Found at i:8306294 original size:28 final size:28
Alignment explanation
Indices: 8306254--8306466 Score: 93
Period size: 32 Copynumber: 7.5 Consensus size: 28
8306244 GACTTTTAAC
8306254 TTAATTGCATGTTTACATTATAATATAT
1 TTAATTGCATGTTTACATTATAATATAT
* * ** * *
8306282 TTAATTACATGTTCATTTGTATGATTTAT
1 TTAATTGCATGTTTACAT-TATAATATAT
** *
8306311 ACAATTGCATGTTTGCATGAATATTAATATAT
1 TTAATTGCATGTTTACAT---TA-TAATATAT
* * *
8306343 TTACTTGCATGATT--ATT-TTATATA-
1 TTAATTGCATGTTTACATTATAATATAT
* *
8306367 TT-ATT--A--TTTGCATGATAATATAT
1 TTAATTGCATGTTTACATTATAATATAT
* *
8306390 ATTCAATTACATGTTTGCATTATAATATAT
1 -TT-AATTGCATGTTTACATTATAATATAT
* * *
8306420 TTAATTACATGTTTGCATGATTTTTAATATAT
1 TTAATTGCATGTTT--A-CA-TTATAATATAT
8306452 TTAATTGCATGTTTA
1 TTAATTGCATGTTTA
8306467 TTTGTGTGAT
Statistics
Matches: 136, Mismatches: 30, Indels: 36
0.67 0.15 0.18
Matches are distributed among these distances:
19 2 0.01
21 3 0.02
22 6 0.04
23 2 0.01
24 4 0.03
25 6 0.04
26 3 0.02
27 1 0.01
28 27 0.20
29 21 0.15
30 19 0.14
31 3 0.02
32 39 0.29
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.50
Consensus pattern (28 bp):
TTAATTGCATGTTTACATTATAATATAT
Found at i:8306377 original size:27 final size:24
Alignment explanation
Indices: 8306322--8306382 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 24
8306312 CAATTGCATG
*
8306322 TTTGCATGAATATTAATATATTTA
1 TTTGCATGATTATTAATATATTTA
* *
8306346 CTTGCATGATTATTTTATATATTATTA
1 TTTGCATGATTA-TTAATATA-T-TTA
8306373 TTTGCATGAT
1 TTTGCATGAT
8306383 AATATATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 10 0.33
25 7 0.23
26 1 0.03
27 12 0.40
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (24 bp):
TTTGCATGATTATTAATATATTTA
Found at i:8306409 original size:30 final size:28
Alignment explanation
Indices: 8306373--8306465 Score: 114
Period size: 32 Copynumber: 3.1 Consensus size: 28
8306363 TATATTATTA
8306373 TTTGCATGATAATATATATTCAATTACATG
1 TTTGCATGATAATATAT-TT-AATTACATG
*
8306403 TTTGCATTATAATATATTTAATTACATG
1 TTTGCATGATAATATATTTAATTACATG
*
8306431 TTTGCATGATTTTTAATATATTTAATTGCATG
1 TTTGCATGA----TAATATATTTAATTACATG
8306463 TTT
1 TTT
8306466 ATTTGTGTGA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
28 17 0.30
29 2 0.04
30 16 0.29
32 21 0.38
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.51
Consensus pattern (28 bp):
TTTGCATGATAATATATTTAATTACATG
Found at i:8307669 original size:58 final size:59
Alignment explanation
Indices: 8307547--8307896 Score: 437
Period size: 60 Copynumber: 6.0 Consensus size: 59
8307537 CTTGTGTAGT
* * *
8307547 GAAAATTCATACTTTCAACTTTTCTCCAAAAG-AATTTTTTGGAAA-TTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAATTTTATTTTTAAG
*
8307604 AAAAATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAA-TTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAATTTTATTTTTAAG
* *
8307662 GAAAATTGATACTTTCAAC-TTTCACCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTC-CCCAAAAGTATTTTTTTGGAAATTTT-ATTTTTAAG
* * **
8307722 AAAAATTGATACTTTCAACTTTTCCTCAAAA--ACCCTTTTT-GAAA-TTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAGTA-TTTTTTTGGAAATTTTATTTTTAAG
* * * *
8307778 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAATTTT-ATTTTTAAG
* * *
8307838 GAAAATTGATACTTTCAACTTTTCTCTAAAAATATATTTTTTGGAAATTTTTATTTTTA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAGTAT-TTTTTTGGAAA-TTTTATTTTTA
8307897 TTTAAAGAAA
Statistics
Matches: 257, Mismatches: 23, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
56 36 0.14
57 41 0.16
58 72 0.28
59 11 0.04
60 73 0.28
61 20 0.08
62 4 0.02
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAATTTTATTTTTAAG
Found at i:8307790 original size:116 final size:116
Alignment explanation
Indices: 8307547--8307869 Score: 462
Period size: 116 Copynumber: 2.8 Consensus size: 116
8307537 CTTGTGTAGT
* * *
8307547 GAAAATTCATACTTTCAACTTTTCTCC-AAAAG-AATTTTTTGGAAA-TTT-ATTTTTAAGAAAA
1 GAAAATTGATACTTTCAACTTTTC-CCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAGAAAA
* **
8307608 ATTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAATTTATTTTTAAG
65 ATTGATACTTTCAACTTTTCCTCAAAA--ACCTTTTTGGAAATTTATTTTTAAG
8307662 GAAAATTGATACTTTCAAC-TTTCACCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAGAAAA
1 GAAAATTGATACTTTCAACTTTTC-CCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAGAAAA
8307726 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTT-GAAATTTATTTTTAAG
65 ATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTGGAAATTTATTTTTAAG
* * *
8307778 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTCAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAGAAAAA
8307843 TTGATACTTTCAACTTTT-CTCTAAAAA
66 TTGATACTTTCAACTTTTCCTC-AAAAA
8307870 TATATTTTTT
Statistics
Matches: 191, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
114 6 0.03
115 26 0.14
116 109 0.57
117 12 0.06
118 38 0.20
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.43
Consensus pattern (116 bp):
GAAAATTGATACTTTCAACTTTTCCCTAAAAGTATTTTTTTGGAAATTTTGATTTTCAAGAAAAA
TTGATACTTTCAACTTTTCCTCAAAAACCTTTTTGGAAATTTATTTTTAAG
Found at i:8307936 original size:17 final size:17
Alignment explanation
Indices: 8307909--8307971 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
8307899 TAAAGAAAAT
8307909 AGAATAAATAAAAAATAA
1 AGAA-AAATAAAAAATAA
8307927 AGAAAAATAAAAAATAA
1 AGAAAAATAAAAAATAA
*
8307944 A-AAAAGTAAAACAA-AA
1 AGAAAAATAAAA-AATAA
*
8307960 ATAAAAATAAAA
1 AGAAAAATAAAA
8307972 TAAAGATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
16 12 0.29
17 25 0.61
18 4 0.10
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.13
Consensus pattern (17 bp):
AGAAAAATAAAAAATAA
Found at i:8307937 original size:21 final size:22
Alignment explanation
Indices: 8307911--8307981 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 22
8307901 AAGAAAATAG
8307911 AATAAATAAAAAATAAAG-AAA
1 AATAAATAAAAAATAAAGTAAA
*
8307932 AATAAA-AAATAAAAAAAGTAAA
1 AATAAATAAA-AAATAAAGTAAA
* *
8307954 ACAAAAAT-AAAAATAAAATAAA
1 A-ATAAATAAAAAATAAAGTAAA
*
8307976 GATAAA
1 AATAAA
8307982 AAGAATATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 3 0.08
21 17 0.43
22 14 0.35
23 6 0.15
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (22 bp):
AATAAATAAAAAATAAAGTAAA
Found at i:8307945 original size:6 final size:6
Alignment explanation
Indices: 8307914--8307983 Score: 54
Period size: 6 Copynumber: 11.5 Consensus size: 6
8307904 AAAATAGAAT
* * * *
8307914 AAATAA AAA-AT AAAGAA AAATAAA AAATAA AAAAAGTA AAACAA AAATAA
1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAATA--A AAATAA AAATAA
*
8307964 AAAT-A AAATAA AGATAA AAA
1 AAATAA AAATAA AAATAA AAA
8307984 GAATATTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 9 0.18
6 31 0.61
7 6 0.12
8 5 0.10
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:8307954 original size:33 final size:33
Alignment explanation
Indices: 8307904--8307971 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
8307894 TTATTTAAAG
*
8307904 AAAATAGAATAAATAAAA-AATAAAGAAAAATAA
1 AAAATAGAAAAAATAAAACAA-AAAGAAAAATAA
*
8307937 AAAATA-AAAAAAGTAAAACAAAAATAAAAATAA
1 AAAATAGAAAAAA-TAAAACAAAAAGAAAAATAA
8307970 AA
1 AA
8307972 TAAAGATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 5 0.16
33 24 0.77
34 2 0.06
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (33 bp):
AAAATAGAAAAAATAAAACAAAAAGAAAAATAA
Found at i:8307976 original size:27 final size:28
Alignment explanation
Indices: 8307911--8307982 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 28
8307901 AAGAAAATAG
* *
8307911 AATAAATAAAAAAT-AAAGAAAAATAAAA
1 AATAAA-AAAAGATAAAACAAAAATAAAA
8307939 AATAAAAAAAG-TAAAACAAAAAT-AAA
1 AATAAAAAAAGATAAAACAAAAATAAAA
8307965 AATAAAATAAAGATAAAA
1 AATAAAA-AAAGATAAAA
8307983 AGAATATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 11 0.28
27 17 0.44
28 11 0.28
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (28 bp):
AATAAAAAAAGATAAAACAAAAATAAAA
Found at i:8307980 original size:11 final size:11
Alignment explanation
Indices: 8307914--8307982 Score: 56
Period size: 11 Copynumber: 6.3 Consensus size: 11
8307904 AAAATAGAAT
8307914 AAATAAAAA-A
1 AAATAAAAATA
*
8307924 TAAAGAAAAATA
1 -AAATAAAAATA
8307936 AAA-AATAAA-A
1 AAATAA-AAATA
8307946 AAAGTAAAACA-A
1 AAA-TAAAA-ATA
8307958 AAATAAAAATA
1 AAATAAAAATA
*
8307969 AAATAAAGATA
1 AAATAAAAATA
8307980 AAA
1 AAA
8307983 AGAATATTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
10 7 0.14
11 35 0.70
12 8 0.16
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:8307983 original size:17 final size:16
Alignment explanation
Indices: 8307904--8307981 Score: 54
Period size: 17 Copynumber: 4.8 Consensus size: 16
8307894 TTATTTAAAG
* *
8307904 AAAATAGAATAAATAA
1 AAAATAAAATAAAGAA
* *
8307920 AAAATAAAGAAAAATAA
1 AAAATAAA-ATAAAGAA
8307937 AAAATAAAA-AAAGTAA
1 AAAATAAAATAAAG-AA
*
8307953 AACA-AAAATAAA-AA
1 AAAATAAAATAAAGAA
8307967 TAAAATAAAGATAAA
1 -AAAATAAA-ATAAA
8307982 AAGAATATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
14 2 0.04
15 10 0.20
16 19 0.37
17 20 0.39
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14
Consensus pattern (16 bp):
AAAATAAAATAAAGAA
Found at i:8308998 original size:23 final size:22
Alignment explanation
Indices: 8308972--8309045 Score: 96
Period size: 23 Copynumber: 3.3 Consensus size: 22
8308962 ATAATTAGAT
8308972 AAATAAAAATACGAAAATAAATA
1 AAATAAAAATAC-AAAATAAATA
8308995 AAATAAAAATACAAAAATAAATA
1 AAATAAAAATAC-AAAATAAATA
*
8309018 AAATATAAAATA-ATAATAAATA
1 AAATA-AAAATACAAAATAAATA
*
8309040 TAATAA
1 AAATAA
8309046 TATATAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
21 1 0.02
22 13 0.28
23 27 0.57
24 6 0.13
ACGTcount: A:0.74, C:0.03, G:0.01, T:0.22
Consensus pattern (22 bp):
AAATAAAAATACAAAATAAATA
Found at i:8309005 original size:15 final size:15
Alignment explanation
Indices: 8308970--8309070 Score: 80
Period size: 15 Copynumber: 6.5 Consensus size: 15
8308960 ATATAATTAG
8308970 ATAAATAAAAATACGAAA
1 ATAAAT-AAAATA--AAA
8308988 ATAAATAAAATAAAA
1 ATAAATAAAATAAAA
*
8309003 ATACA-AAAATAAATA
1 ATAAATAAAATAAA-A
*
8309018 A-AATATAAAATAATA
1 ATAA-ATAAAATAAAA
* *
8309033 ATAAATATAATAATAT
1 ATAAATAAAATAA-AA
* *
8309049 ATAAATAAAATACAT
1 ATAAATAAAATAAAA
8309064 ATAAATA
1 ATAAATA
8309071 TTAACAGAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
14 9 0.13
15 29 0.41
16 20 0.29
17 6 0.09
18 6 0.09
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (15 bp):
ATAAATAAAATAAAA
Found at i:8309014 original size:19 final size:18
Alignment explanation
Indices: 8308990--8309058 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 18
8308980 ATACGAAAAT
8308990 AAATAAAATAAAAATACAA
1 AAATAAAATAAAAATA-AA
*
8309009 AAAT-AAAT-AAAATATA
1 AAATAAAATAAAAATAAA
*
8309025 AAATAATAATAAATATAATA
1 AAATAA-AATAAAAATAA-A
*
8309045 ATATATAAATAAAA
1 AAATA-AAATAAAA
8309059 TACATATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
16 5 0.12
17 7 0.17
18 7 0.17
19 9 0.22
20 11 0.28
21 1 0.03
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATAAAATAAAAATAAA
Found at i:8309016 original size:18 final size:18
Alignment explanation
Indices: 8308970--8309037 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 18
8308960 ATATAATTAG
8308970 ATAAATAAAAATACGAAAATAA
1 ATAAATAAAAATAC---AA-AA
8308992 ATAAAATAAAAATACAAAA
1 AT-AAATAAAAATACAAAA
8309011 ATAAATAAAATATA-AAATA
1 ATAAATAAAA-ATACAAA-A
8309030 AT-AATAAA
1 ATAAATAAA
8309038 TATAATAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
18 17 0.40
19 10 0.23
20 2 0.05
22 2 0.05
23 12 0.28
ACGTcount: A:0.75, C:0.03, G:0.01, T:0.21
Consensus pattern (18 bp):
ATAAATAAAAATACAAAA
Found at i:8309047 original size:25 final size:24
Alignment explanation
Indices: 8309008--8309068 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 24
8308998 TAAAAATACA
8309008 AAAAT-AA-ATAAAATATA-AAAT
1 AAAATAAATATAAAATATATAAAT
8309029 AATAATAAATATAATAATATATAAAT
1 AA-AATAAATATAA-AATATATAAAT
*
8309055 AAAATACATATAAA
1 AAAATAAATATAAA
8309069 TATTAACAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 2 0.06
22 3 0.09
23 2 0.06
24 5 0.15
25 16 0.47
26 6 0.18
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (24 bp):
AAAATAAATATAAAATATATAAAT
Found at i:8309367 original size:1 final size:1
Alignment explanation
Indices: 8309363--8309419 Score: 69
Period size: 1 Copynumber: 57.0 Consensus size: 1
8309353 GTTTTTTGCA
* * * * *
8309363 TTTTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8309420 ACCAAAGCTC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.02, C:0.00, G:0.07, T:0.91
Consensus pattern (1 bp):
T
Found at i:8309368 original size:16 final size:15
Alignment explanation
Indices: 8309346--8309419 Score: 89
Period size: 15 Copynumber: 4.8 Consensus size: 15
8309336 ACATTGTCAT
8309346 TTTTTTTGTTTTTTG
1 TTTTTTTGTTTTTTG
*
8309361 CATTTTTTTTTTTTTTG
1 --TTTTTTTGTTTTTTG
8309378 TTTTTTTGTTTTTTTG
1 TTTTTTTG-TTTTTTG
8309394 TTTTTTTGTTTTTT-
1 TTTTTTTGTTTTTTG
8309408 TTATTTTT-TTTT
1 TT-TTTTTGTTTT
8309420 ACCAAAGCTC
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
14 6 0.11
15 18 0.34
16 15 0.28
17 14 0.26
ACGTcount: A:0.03, C:0.01, G:0.08, T:0.88
Consensus pattern (15 bp):
TTTTTTTGTTTTTTG
Found at i:8309372 original size:24 final size:23
Alignment explanation
Indices: 8309345--8309419 Score: 98
Period size: 24 Copynumber: 3.1 Consensus size: 23
8309335 AACATTGTCA
8309345 TTTTTTTTGTTTTTTGCATTTTTT
1 TTTTTTTTGTTTTTTG-ATTTTTT
8309369 TTTTTTTTGTTTTTTTG-TTTTTT
1 TTTTTTTTG-TTTTTTGATTTTTT
*
8309392 TGTTTTTTTGTTTTTTTTATTTTTT
1 T-TTTTTTTG-TTTTTTGATTTTTT
8309417 TTT
1 TTT
8309420 ACCAAAGCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
23 7 0.15
24 26 0.55
25 14 0.30
ACGTcount: A:0.03, C:0.01, G:0.08, T:0.88
Consensus pattern (23 bp):
TTTTTTTTGTTTTTTGATTTTTT
Found at i:8309417 original size:8 final size:8
Alignment explanation
Indices: 8309346--8309408 Score: 94
Period size: 8 Copynumber: 7.9 Consensus size: 8
8309336 ACATTGTCAT
8309346 TTTTTTTG
1 TTTTTTTG
8309354 -TTTTTTG
1 TTTTTTTG
8309361 CATTTTTTT-
1 --TTTTTTTG
8309370 TTTTTTTG
1 TTTTTTTG
8309378 TTTTTTTG
1 TTTTTTTG
8309386 TTTTTTTG
1 TTTTTTTG
8309394 TTTTTTTG
1 TTTTTTTG
8309402 TTTTTTT
1 TTTTTTT
8309409 TATTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
7 14 0.27
8 31 0.61
10 6 0.12
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTTTG
Found at i:8309520 original size:40 final size:40
Alignment explanation
Indices: 8309426--8309626 Score: 276
Period size: 40 Copynumber: 5.0 Consensus size: 40
8309416 TTTTACCAAA
* * *
8309426 GCTCCTCTAAACAGAGGCTCAACGACTTTGCGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTT--GAAA-ATAAATT
*
8309469 GCTCCTCTAAACAGAGGCACCATAACTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAATT
* *
8309509 GCTCCTTTAAACAGAGGCACCATAACTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAATT
* * *
8309549 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAATT
* *
8309589 GCTCCTCTAAACAGAGCCACCACGACTTTGAAAATAAA
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAA
8309627 CAGAGGCACC
Statistics
Matches: 145, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 116 0.80
41 4 0.03
43 25 0.17
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.23
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACCACAACTTTGAAAATAAATT
Found at i:8309636 original size:27 final size:27
Alignment explanation
Indices: 8309596--8309653 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
8309586 ATTGCTCCTC
8309596 TAAACAGAGCCACCACGACTTTGAAAA
1 TAAACAGAGCCACCACGACTTTGAAAA
*
8309623 TAAACAGAGGCACCACGACTTTGAAAA
1 TAAACAGAGCCACCACGACTTTGAAAA
8309650 TAAA
1 TAAA
8309654 TTGCTCCTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (27 bp):
TAAACAGAGCCACCACGACTTTGAAAA
Found at i:8309664 original size:67 final size:68
Alignment explanation
Indices: 8309556--8309694 Score: 244
Period size: 67 Copynumber: 2.1 Consensus size: 68
8309546 ATTACTCCTC
*
8309556 TAAACAGAGGCACCACGACTTTGGAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTT-GA
1 TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTTGGA
8309620 AAA
66 AAA
*
8309623 TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGA
1 TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTTGGA
*
8309688 AAG
66 AAA
8309691 TAAA
1 TAAA
8309695 TTGCTCCTCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 60 0.88
68 8 0.12
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (68 bp):
TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTTGGA
AAA
Found at i:8309746 original size:42 final size:41
Alignment explanation
Indices: 8309623--8309786 Score: 267
Period size: 42 Copynumber: 4.0 Consensus size: 41
8309613 ACTTTGAAAA
8309623 TAAACAGAGGCACCACGACTTTGAAAA-TAAATTGCTCCTC
1 TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTC
*
8309663 TAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTC
1 TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTC
*
8309704 TAAACAGAGGCACCACGATTTTTGAAAAGTAAATTGCTCCTC
1 TAAACAGAGGCACCACGA-CTTTGAAAAGTAAATTGCTCCTC
* *
8309746 TAAACAGAGCCACCATGACTTTGGAAAAGTAAATTGCTCCT
1 TAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCT
8309787 TGACAATCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 26 0.23
41 34 0.30
42 55 0.48
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (41 bp):
TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTC
Found at i:8309760 original size:83 final size:82
Alignment explanation
Indices: 8309623--8309786 Score: 276
Period size: 83 Copynumber: 2.0 Consensus size: 82
8309613 ACTTTGAAAA
*
8309623 TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG-
1 TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTTGGA
8309687 AAAGTAAATTGCTCCTC
66 AAAGTAAATTGCTCCTC
* *
8309704 TAAACAGAGGCACCACGATTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGCCACCATGACTTTG
1 TAAACAGAGGCACCACGA-CTTTGAAAA-TAAATTGCTCCTCTAAACAGAGCCACCACGACTTTG
8309769 GAAAAGTAAATTGCTCCT
64 GAAAAGTAAATTGCTCCT
8309787 TGACAATCAT
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
81 18 0.23
82 8 0.10
83 35 0.45
84 16 0.21
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (82 bp):
TAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGCCACCACGACTTTGGA
AAAGTAAATTGCTCCTC
Found at i:8310520 original size:23 final size:24
Alignment explanation
Indices: 8310493--8310540 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8310483 ACTTTTCAAA
*
8310493 ATTTG-CCCCATCATATATCCTTC
1 ATTTGACCACATCATATATCCTTC
* *
8310516 ATTTGATCACATCATATATCTTTC
1 ATTTGACCACATCATATATCCTTC
8310540 A
1 A
8310541 AATCATCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.42
Consensus pattern (24 bp):
ATTTGACCACATCATATATCCTTC
Found at i:8311079 original size:26 final size:29
Alignment explanation
Indices: 8311040--8311111 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 29
8311030 TTGAATCTCC
*
8311040 TTTTTTCATTTTTTTCATTTCT-TTC-TTTT
1 TTTTTTCA--TTTTTCATTTCTCATCTTTTT
* *
8311069 TTTTTTC-TTTTT-TTTTGTCATCTTTTT
1 TTTTTTCATTTTTCATTTCTCATCTTTTT
8311096 TTTTTTCATTTTTCAT
1 TTTTTTCATTTTTCAT
8311112 CCATTGTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
25 4 0.11
26 7 0.20
27 11 0.31
28 5 0.14
29 8 0.23
ACGTcount: A:0.07, C:0.12, G:0.01, T:0.79
Consensus pattern (29 bp):
TTTTTTCATTTTTCATTTCTCATCTTTTT
Found at i:8311104 original size:15 final size:15
Alignment explanation
Indices: 8311048--8311108 Score: 63
Period size: 15 Copynumber: 4.0 Consensus size: 15
8311038 CCTTTTTTCA
8311048 TTTTTTTCATTTCTTTCT
1 TTTTTTTCA--TCTTT-T
*
8311066 TTTTTTT-TTCTTTT
1 TTTTTTTCATCTTTT
*
8311080 TTTTTGTCATCTTTT
1 TTTTTTTCATCTTTT
8311095 TTTTTTTCAT-TTTT
1 TTTTTTTCATCTTTT
8311109 CATCCATTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
14 11 0.29
15 20 0.53
18 7 0.18
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.82
Consensus pattern (15 bp):
TTTTTTTCATCTTTT
Found at i:8315087 original size:111 final size:111
Alignment explanation
Indices: 8314944--8315278 Score: 511
Period size: 111 Copynumber: 3.0 Consensus size: 111
8314934 TCTTGTGTAG
* *
8314944 GGAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTAAAATTTATTTTTAAGGAAAATTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTAAAATTTATTTTTAAGGAAAATTGA
8315009 TACTTTCAACTTTTCCCAAAATATTTTTTTGGAAATTTATTTTTAA
66 TACTTTCAACTTTTCCCAAAATATTTTTTTGGAAATTTATTTTTAA
* *
8315055 GGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTGAAATTTATTTTCAA--AAAATTGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTAAAATTTATTTTTAAGGAAAATTGA
8315118 TACTTTCAACTTTTCCTCAAAA-A-TTTTTT-GAAATTTATTTTTAA
66 TACTTTCAACTTTTCC-CAAAATATTTTTTTGGAAATTTATTTTTAA
8315162 GGAAAATTGATACTTTCAACTTTT-CCTAAAAATATTTTTTTAGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAATA-TTTTTTA-AAATTTATTTTTAAGGAAAAT
8315226 TGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGGAAATTTTGATTTTTA
63 TGATACTTTCAACTTTTCCC--AAAATAT-TTTTTTGGAAA-TTT-ATTTTTA
8315279 TTTAAAGAAA
Statistics
Matches: 204, Mismatches: 6, Indels: 21
0.88 0.03 0.09
Matches are distributed among these distances:
106 3 0.01
107 45 0.22
108 12 0.06
109 37 0.18
110 6 0.03
111 76 0.37
112 4 0.02
113 1 0.00
115 6 0.03
116 4 0.02
117 3 0.01
118 7 0.03
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (111 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTAAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:8315128 original size:164 final size:167
Alignment explanation
Indices: 8314946--8315269 Score: 557
Period size: 164 Copynumber: 2.0 Consensus size: 167
8314936 TTGTGTAGGG
8314946 AAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTAAAATTTATTTTTAAGGAAAATTAATA
1 AAAATTGATACTTTCAACTTTTCCCCAAAA-ATTTTTTAAAATTTATTTTTAAGGAAAATTAATA
* *
8315011 CTTTCAACTTTTCC-CAAAATATTTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
65 CTTTCAACTTTTCCTAAAAATATTTTTTTAGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
8315075 TTTTCCCT-AAA-ATATTTTTT-GAAATTTATTTTCAA
130 TTTTCCCTAAAATATATTTTTTGGAAATTTATTTTCAA
* * *
8315110 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTGAAATTTATTTTTAAGGAAAATTGATAC
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTAAAATTTATTTTTAAGGAAAATTAATAC
8315175 TTTCAACTTTTCCTAAAAATATTTTTTTAGAAATTTATTTTTAAGGAAAATTGATACTTTCAACT
66 TTTCAACTTTTCCTAAAAATATTTTTTTAGAAATTTATTTTTAAGGAAAATTGATACTTTCAACT
8315240 TTTCCCTAAAAATATATTTTTTGGAAATTT
131 TTTCCCT-AAAATATATTTTTTGGAAATTT
8315270 TGATTTTTAT
Statistics
Matches: 150, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
163 46 0.31
164 85 0.57
166 3 0.02
167 9 0.06
168 7 0.05
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.46
Consensus pattern (167 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTAAAATTTATTTTTAAGGAAAATTAATAC
TTTCAACTTTTCCTAAAAATATTTTTTTAGAAATTTATTTTTAAGGAAAATTGATACTTTCAACT
TTTCCCTAAAATATATTTTTTGGAAATTTATTTTCAA
Found at i:8315138 original size:28 final size:28
Alignment explanation
Indices: 8315057--8315140 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
8315047 ATTTTTAAGG
8315057 AAAATTGATACTTTCAACTTTTCC-CTAA
1 AAAATTGATACTTTCAACTTTTCCTC-AA
* * * **
8315085 AATATT--T--TTTGAAATTTATTTTCAA
1 AAAATTGATACTTTCAACTTT-TCCTCAA
8315110 AAAATTGATACTTTCAACTTTTCCTCAA
1 AAAATTGATACTTTCAACTTTTCCTCAA
8315138 AAA
1 AAA
8315141 TTTTTTGAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
24 8 0.20
25 8 0.20
26 2 0.05
27 1 0.03
28 13 0.32
29 8 0.20
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.43
Consensus pattern (28 bp):
AAAATTGATACTTTCAACTTTTCCTCAA
Found at i:8315325 original size:27 final size:26
Alignment explanation
Indices: 8315293--8315357 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
8315283 AAGAAAATAG
8315293 AATAAATAAAA-AAATAAAAAAATAAAA
1 AATAAATAAAAGAAA-AAAAAAATA-AA
* *
8315320 AATAAAGAAAAGTAAAACAAAAATAAA
1 AATAAATAAAAG-AAAAAAAAAATAAA
8315347 AATAAAATAAA
1 AAT-AAATAAA
8315358 GATAAAAGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 15 0.47
28 14 0.44
29 3 0.09
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.14
Consensus pattern (26 bp):
AATAAATAAAAGAAAAAAAAAATAAA
Found at i:8315362 original size:17 final size:17
Alignment explanation
Indices: 8315296--8315364 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 17
8315286 AAAATAGAAT
* *
8315296 AAATAAAA-AAATAAAA
1 AAATAAAATAAAGATAA
8315312 AAATAAAAAATAAAG--AA
1 AAAT--AAAATAAAGATAA
* * *
8315329 AAGTAAAACAAAAATAA
1 AAATAAAATAAAGATAA
8315346 AAATAAAATAAAGATAA
1 AAATAAAATAAAGATAA
8315363 AA
1 AA
8315365 GGAATATTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
15 7 0.17
16 4 0.10
17 23 0.56
18 4 0.10
19 3 0.07
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (17 bp):
AAATAAAATAAAGATAA
Found at i:8315452 original size:17 final size:18
Alignment explanation
Indices: 8315415--8315463 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
8315405 TAAAAAAAAC
* *
8315415 AAATAAACAAAGAATTGA
1 AAATAAACAAAAAATTCA
8315433 AAATAAA-AAAAAATTCA
1 AAATAAACAAAAAATTCA
8315450 AAA-AAACGAAAAAA
1 AAATAAAC-AAAAAA
8315464 AAAACTTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 3 0.11
17 11 0.41
18 13 0.48
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAACAAAAAATTCA
Found at i:8316391 original size:28 final size:30
Alignment explanation
Indices: 8316357--8316428 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
8316347 TAATTAGAAC
*
8316357 AGATAAATAAAAAA-AA-AGATATATTA-T
1 AGATAAATAAAAAATAACAGATATATAATT
8316384 AGGATAAATAAAAAAATAACAGATATATAATT
1 A-GATAAAT-AAAAAATAACAGATATATAATT
8316416 AGATAAATAAAAA
1 AGATAAATAAAAA
8316429 TATGAAAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 1 0.03
28 7 0.18
29 6 0.15
30 7 0.18
31 16 0.41
32 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.08, T:0.24
Consensus pattern (30 bp):
AGATAAATAAAAAATAACAGATATATAATT
Found at i:8316441 original size:4 final size:4
Alignment explanation
Indices: 8316434--8316584 Score: 55
Period size: 4 Copynumber: 36.8 Consensus size: 4
8316424 AAAAATATGA
*
8316434 AAAT AAAT AAAT ATAA- AATT ATAAT AAAT AAATT ATAAT ATAAT -AAT
1 AAAT AAAT AAAT A-AAT AAAT A-AAT AAAT AAA-T A-AAT A-AAT AAAT
* * * * *
8316481 AAAT ATAT AACT ATAT AAAT AAAAT ACATAT AAAT -ATT AACAG AAA-
1 AAAT AAAT AAAT AAAT AAAT -AAAT A-A-AT AAAT AAAT AA-AT AAAT
* * * * *
8316527 AAA- AAAT AAAT AAAT ATAT ACAT ATAT TAAT GAAT AGTAAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A--AAT AAAT AAAT
8316575 AAAT -AAT AAA
1 AAAT AAAT AAA
8316585 ATACATAAAA
Statistics
Matches: 113, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
3 18 0.16
4 66 0.58
5 21 0.19
6 8 0.07
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:8316443 original size:22 final size:21
Alignment explanation
Indices: 8316389--8316517 Score: 82
Period size: 22 Copynumber: 6.0 Consensus size: 21
8316379 ATTATAGGAT
* *
8316389 AAATAAAAAAATAACAGATATA
1 AAATAAATAAATAA-AAATATA
* *
8316411 TAATTAGATAAATAAAAATATGA
1 -AAATAAATAAATAAAAATAT-A
8316434 AAATAAATAAATATAAAAT-TA
1 AAATAAATAAATA-AAAATATA
* * *
8316455 TAATAAATAAATTATAATATA
1 AAATAAATAAATAAAAATATA
* **
8316476 ATAATAAATATATAACTATAT-
1 A-AATAAATAAATAAAAATATA
* *
8316497 AAATAAAATACATATAAATAT
1 AAAT-AAATAAATAAAAATAT
8316518 TAACAGAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
20 7 0.08
21 27 0.33
22 32 0.39
23 17 0.20
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AAATAAATAAATAAAAATATA
Found at i:8316471 original size:11 final size:12
Alignment explanation
Indices: 8316421--8316584 Score: 71
Period size: 11 Copynumber: 13.8 Consensus size: 12
8316411 TAATTAGATA
8316421 AATAA-AAATAT
1 AATAATAAATAT
8316432 GAA-AATAAATA-
1 -AATAATAAATAT
8316443 AAT-ATAAA-AT
1 AATAATAAATAT
*
8316453 TATAATAAATA-
1 AATAATAAATAT
*
8316464 AATTAT-AATAT
1 AATAATAAATAT
8316475 AATAATAAATATAT
1 AATAAT-AA-ATAT
*
8316489 AACTATATAAATAA
1 AA-TA-ATAAATAT
8316503 AATACATATAA-AT
1 AATA-ATA-AATAT
* * *
8316516 ATTAACAGAA-AA
1 AATAATA-AATAT
*
8316528 AAAAATAAATA-
1 AATAATAAATAT
*
8316539 AATATATACATAT
1 AATA-ATAAATAT
* *
8316552 ATTAATGAATAGT
1 AATAATAAATA-T
8316565 AATAATAAATA-
1 AATAATAAATAT
8316576 AATAATAAA
1 AATAATAAA
8316585 ATACATAAAA
Statistics
Matches: 115, Mismatches: 21, Indels: 33
0.68 0.12 0.20
Matches are distributed among these distances:
9 1 0.01
10 13 0.11
11 30 0.26
12 29 0.25
13 23 0.20
14 13 0.11
15 4 0.03
16 2 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:8316626 original size:23 final size:24
Alignment explanation
Indices: 8316582--8316632 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
8316572 AATAAATAAT
8316582 AAAATACATAAAATACAAAGGAAAA
1 AAAATACATAAAATAC-AAGGAAAA
*
8316607 AAAATA-ATAATAATAC-AGGATAA
1 AAAATACATAA-AATACAAGGAAAA
8316630 AAA
1 AAA
8316633 TTGAATTGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 9 0.38
24 4 0.17
25 11 0.46
ACGTcount: A:0.71, C:0.06, G:0.08, T:0.16
Consensus pattern (24 bp):
AAAATACATAAAATACAAGGAAAA
Found at i:8319076 original size:17 final size:17
Alignment explanation
Indices: 8319054--8319099 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
8319044 ATGTGTTTCA
8319054 TGCATATCATATGTCAG
1 TGCATATCATATGTCAG
8319071 TGCATATCATATGTCAG
1 TGCATATCATATGTCAG
*
8319088 TGCATTTCATAT
1 TGCATATCATAT
8319100 AAGTATGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (17 bp):
TGCATATCATATGTCAG
Found at i:8321374 original size:9 final size:10
Alignment explanation
Indices: 8321347--8321372 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8321337 CCTTGAAAAA
8321347 AAAAAAAGGG
1 AAAAAAAGGG
8321357 AAAAAAAGGG
1 AAAAAAAGGG
8321367 AAAAAA
1 AAAAAA
8321373 GGTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AAAAAAAGGG
Found at i:8324388 original size:23 final size:21
Alignment explanation
Indices: 8324361--8324412 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 21
8324351 AAGATAAAAT
**
8324361 ATTTTGAAACAAATGGTGAAAA
1 ATTTTGAAACAAAAAGTG-AAA
8324383 ACTTTTGAAACAAAAAGTGAAA
1 A-TTTTGAAACAAAAAGTGAAA
8324405 ATTTTGAA
1 ATTTTGAA
8324413 GTGAAAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 7 0.26
22 5 0.19
23 15 0.56
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (21 bp):
ATTTTGAAACAAAAAGTGAAA
Found at i:8324518 original size:40 final size:40
Alignment explanation
Indices: 8324463--8324589 Score: 159
Period size: 40 Copynumber: 3.1 Consensus size: 40
8324453 AAATGAGTAC
*
8324463 ATGATTTCCAAGACCTCTAGGCAAAA-TGTTAAATTTTTAA
1 ATGATTTTCAAGACCTCTAGGCAAAACT-TTAAATTTTTAA
* *
8324503 ATGATTTTCAAGACCTCTAGGCAAAATTTTTAAA-TTTTGA
1 ATGATTTTCAAGACCTCTAGGCAAAA-CTTTAAATTTTTAA
* * *
8324543 ATGATTTTCAAAAACCTTTAGGCAAAACTTCAAATTTTTAA
1 ATGATTTTC-AAGACCTCTAGGCAAAACTTTAAATTTTTAA
8324584 ATGATT
1 ATGATT
8324590 AAAGATTCAA
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 44 0.58
41 31 0.41
42 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (40 bp):
ATGATTTTCAAGACCTCTAGGCAAAACTTTAAATTTTTAA
Found at i:8325515 original size:208 final size:208
Alignment explanation
Indices: 8325151--8325791 Score: 645
Period size: 208 Copynumber: 3.1 Consensus size: 208
8325141 CACAAAATGC
* * **
8325151 TTTAAATTTTTAAAGTTTTAA-AGC-TCTTAATTAAATAAGCTTTCATAGATGTCAAGATTTGTA
1 TTTAAATTTTTAAAGTTTCAATA-CTTC-TAATGAAAGGAGCTTTCATAGATGTCAAGATTTGTA
* * * * *
8325214 AGA-CTCCAAGCATAATTTCTAAGATCTCTAGA-TAAAACATTTTAAATTTTTACAGTTTTAATG
64 AGACCTCCAAGAATAATTTCTAAGACCT-TAGAGCAAAACATTTTAAATTTTTAAAGTTTCAATG
** * ** * *
8325277 CCTCTGCCTAG-AGAAGGTTTCATAGATGTCAAGATTGGTAAAACCTTTAGGCATAATCTTTAAG
128 CCTCTGATTAGAAG-AGCTTTCATAGATGTCAAGATTTATAAGACCTTTAGGCATAATCTCTAAG
8325341 ACTTCTAGGAAAAACAT
192 ACTTCTAGGAAAAACAT
** * * *
8325358 TTTAAATTTTTAAAGTTTCAATACTTCTGGTTAGAGGAGCTTTCATAGATGTCAAGATTTGTATG
1 TTTAAATTTTTAAAGTTTCAATACTTCTAATGAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* * * * *
8325423 ACCTTCGAGAATAATTTCTAAGACCTTAAAGCACAATATTTTAAATTTTTAAAGTTTCAATGCCT
66 ACCTCCAAGAATAATTTCTAAGACCTTAGAGCAAAACATTTTAAATTTTTAAAGTTTCAATGCCT
* * * * *
8325488 TTGATTAGAAGAGCTATT-ATAGATGTCAAGATTTATAAGATCTCTGGGCATAATCTCTAACA-T
131 CTGATTAGAAGAGCT-TTCATAGATGTCAAGATTTATAAGACCTTTAGGCATAATCTCTAAGACT
* *
8325551 CTCTAAGTAAAACAT
195 -TCTAGGAAAAACAT
* * * *
8325566 TTTAAATTTTTAAAGTTTCAATACTTCTAATGAAATGAGCTTTCATAAATGTCAAAATTTGTAAA
1 TTTAAATTTTTAAAGTTTCAATACTTCTAATGAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* * * * *
8325631 ACC-CCTAGGTATAATCTT-TAAAACCTTCGAGGAAAACATTTTAAATTTTTAAAGTTTCAATGC
66 ACCTCC-AAGAATAAT-TTCTAAGACCTTAGAGCAAAACATTTTAAATTTTTAAAGTTTCAATGC
** * * * ** *
8325694 CTCCAATTAGAGGAGCTTTCATAAATATCAAGATTTATAAGACC-TCCGAGTATAATCTCTAAGA
129 CTCTGATTAGAAGAGCTTTCATAGATGTCAAGATTTATAAGACCTTTAG-GCATAATCTCTAAGA
* * * *
8325758 CCTCTGGGCAAAATAT
193 CTTCTAGGAAAAACAT
8325774 TTTAAATTTTTAAAGTTT
1 TTTAAATTTTTAAAGTTT
8325792 TAATGCATCT
Statistics
Matches: 355, Mismatches: 67, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
207 62 0.17
208 287 0.81
209 6 0.02
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (208 bp):
TTTAAATTTTTAAAGTTTCAATACTTCTAATGAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
ACCTCCAAGAATAATTTCTAAGACCTTAGAGCAAAACATTTTAAATTTTTAAAGTTTCAATGCCT
CTGATTAGAAGAGCTTTCATAGATGTCAAGATTTATAAGACCTTTAGGCATAATCTCTAAGACTT
CTAGGAAAAACAT
Found at i:8325788 original size:312 final size:312
Alignment explanation
Indices: 8325151--8325812 Score: 797
Period size: 312 Copynumber: 2.1 Consensus size: 312
8325141 CACAAAATGC
* *
8325151 TTTAAATTTTTAAAGTTTTAAAG-CTCTTAATTAAATAAGCTTTCATAGATGTCAAGATTTGTAA
1 TTTAAATTTTTAAAGTTTTAATGCCTCTTAATTAAATAAGCTTTCATAGATGTCAAGATTTATAA
* * * * *
8325215 GACTCCAAGCATAATTTCTAAGATCTCTAGATAAAACATTTTAAATTTTTACAGTTTTAATGCCT
66 GACTCCAAGCATAATCTCTAACATCTCTAGATAAAACATTTTAAATTTTTAAAGTTTCAATACCT
** * * ** *
8325280 CTGCCTAGAGAAGGTTTCATAGATGTCAAGATTGGTAAAACCTTTAGGCATAATCTTTAAGACTT
131 CTGAATAGAGAAGGTTTCATAAATGTCAAAATTGGTAAAACCCCTAGGCATAATCTTTAAAACTT
* * *** * *
8325345 CTAGGAAAAACATTTTAAATTTTTAAAGTTTCAATACTTCTGGTTAGAGGAGCTTTCATAGATGT
196 CGAGGAAAAACATTTTAAATTTTTAAAGTTTCAATACCTCCAATTAGAGGAGCTTTCATAAATAT
* * * * *
8325410 CAAGATTTGTATGACCTTCGAGAATAATTTCTAAGACCTTAAAGCACAATAT
261 CAAGATTTATAAGACCTCCGAGAATAATCTCTAAGACCTTAAAGCAAAATAT
* * *
8325462 TTTAAATTTTTAAAGTTTCAATGCCT-TTGATTAGAA-GAGCTATT-ATAGATGTCAAGATTTAT
1 TTTAAATTTTTAAAGTTTTAATGCCTCTTAATTA-AATAAGCT-TTCATAGATGTCAAGATTTAT
***
8325524 AAGATCTCTGGGCATAATCTCTAACATCTCTA-AGTAAAACATTTTAAATTTTTAAAGTTTCAAT
64 AAGA-CTCCAAGCATAATCTCTAACATCTCTAGA-TAAAACATTTTAAATTTTTAAAGTTTCAAT
* * *
8325588 ACTTCT-AAT-GA-AATGAGCTTTCATAAATGTCAAAATTTGTAAAACCCCTAGGTATAATCTTT
127 ACCTCTGAATAGAGAA-G-G-TTTCATAAATGTCAAAATTGGTAAAACCCCTAGGCATAATCTTT
*
8325650 AAAACCTTCGAGG-AAAACATTTTAAATTTTTAAAGTTTCAATGCCTCCAATTAGAGGAGCTTTC
189 AAAA-CTTCGAGGAAAAACATTTTAAATTTTTAAAGTTTCAATACCTCCAATTAGAGGAGCTTTC
* **
8325714 ATAAATATCAAGATTTATAAGACCTCCGAGTATAATCTCTAAGACCTCT-GGGCAAAATAT
253 ATAAATATCAAGATTTATAAGACCTCCGAGAATAATCTCTAAGACCT-TAAAGCAAAATAT
* *
8325774 TTTAAATTTTTAAAGTTTTAATGCATC-TAACTAAATAAG
1 TTTAAATTTTTAAAGTTTTAATGCCTCTTAATTAAATAAG
8325813 GTTTTATAAA
Statistics
Matches: 295, Mismatches: 44, Indels: 23
0.81 0.12 0.06
Matches are distributed among these distances:
309 2 0.01
310 3 0.01
311 57 0.19
312 225 0.76
313 8 0.03
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (312 bp):
TTTAAATTTTTAAAGTTTTAATGCCTCTTAATTAAATAAGCTTTCATAGATGTCAAGATTTATAA
GACTCCAAGCATAATCTCTAACATCTCTAGATAAAACATTTTAAATTTTTAAAGTTTCAATACCT
CTGAATAGAGAAGGTTTCATAAATGTCAAAATTGGTAAAACCCCTAGGCATAATCTTTAAAACTT
CGAGGAAAAACATTTTAAATTTTTAAAGTTTCAATACCTCCAATTAGAGGAGCTTTCATAAATAT
CAAGATTTATAAGACCTCCGAGAATAATCTCTAAGACCTTAAAGCAAAATAT
Found at i:8325822 original size:104 final size:104
Alignment explanation
Indices: 8325151--8325857 Score: 584
Period size: 104 Copynumber: 6.8 Consensus size: 104
8325141 CACAAAATGC
* * **
8325151 TTTAAATTTTTAAAGTTTTAAAG-CTCTTAATTAAATAAGCTTTCATAGATGTCAAGATTTGTAA
1 TTTAAATTTTTAAAGTTTCAATGCCTC-TAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAA
* * * **
8325215 GA-CTCCAAGCATAATTTCTAAGATCTCTAGATAAAACAT
65 GACCTCCGAGCATAATCTCTAAGACCTCTAGGCAAAACAT
* * *** * * * * *
8325254 TTTAAATTTTTACAGTTTTAATGCCTCTGCCTAGAGAAGGTTTCATAGATGTCAAGATTGGTAAA
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
** * * *
8325319 ACCT-TTAGGCATAATCTTTAAGACTTCTAGGAAAAACAT
66 ACCTCCGA-GCATAATCTCTAAGACCTCTAGGCAAAACAT
* * ** * *
8325358 TTTAAATTTTTAAAGTTTCAATACTTCTGGTTAGAGGAGCTTTCATAGATGTCAAGATTTGTATG
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* * * * * *
8325423 ACCTTCGAGAATAATTTCTAAGACCT-TAAAGCACAATAT
66 ACCTCCGAGCATAATCTCTAAGACCTCT-AGGCAAAACAT
* * *
8325462 TTTAAATTTTTAAAGTTTCAATGCCTTTGATTAGAA-GAGCTATT-ATAGATGTCAAGATTTATA
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTA-AAGGAGCT-TTCATAGATGTCAAGATTTGTA
* * * * * * *
8325525 AGATCTCTGGGCATAATCTCTAACATCTCTAAGTAAAACAT
64 AGACCTCCGAGCATAATCTCTAAGACCTCTAGGCAAAACAT
* * * * * * *
8325566 TTTAAATTTTTAAAGTTTCAATACTTCTAATGAAATGAGCTTTCATAAATGTCAAAATTTGTAAA
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* * * * *
8325631 ACC-CCTAGGTATAATCTTTAAAACCTTCGAGG-AAAACAT
66 ACCTCCGA-GCATAATCTCTAAGACC-TCTAGGCAAAACAT
* * * * *
8325670 TTTAAATTTTTAAAGTTTCAATGCCTCCAATTAGAGGAGCTTTCATAAATATCAAGATTTATAAG
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* * *
8325735 ACCTCCGAGTATAATCTCTAAGACCTCTGGGCAAAATAT
66 ACCTCCGAGCATAATCTCTAAGACCTCTAGGCAAAACAT
* * * ** * * * ** *
8325774 TTTAAATTTTTAAAGTTTTAATGCATCTAACTAAATAAGGTTTTATAAATGTTGAGATTCGTAAG
1 TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
* *
8325839 ACCTTCGAGCATGATCTCT
66 ACCTCCGAGCATAATCTCT
8325858 TATTTTATTT
Statistics
Matches: 481, Mismatches: 109, Indels: 27
0.78 0.18 0.04
Matches are distributed among these distances:
103 63 0.13
104 406 0.84
105 12 0.02
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (104 bp):
TTTAAATTTTTAAAGTTTCAATGCCTCTAATTAAAGGAGCTTTCATAGATGTCAAGATTTGTAAG
ACCTCCGAGCATAATCTCTAAGACCTCTAGGCAAAACAT
Found at i:8325956 original size:10 final size:10
Alignment explanation
Indices: 8325943--8326016 Score: 55
Period size: 10 Copynumber: 7.2 Consensus size: 10
8325933 TAAAATTTTC
8325943 AAAAAAACAA
1 AAAAAAACAA
8325953 AAAAAAA-AA
1 AAAAAAACAA
8325962 AGCAAAGAAACAA
1 A--AAA-AAACAA
**
8325975 AATGAAACAA
1 AAAAAAACAA
*
8325985 AACAAAACAA
1 AAAAAAACAA
8325995 AAAAATGAA-AA
1 AAAAA--AACAA
8326006 AAAAAAA-AA
1 AAAAAAACAA
8326015 AA
1 AA
8326017 CCCAAAAGCC
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
9 9 0.17
10 25 0.47
11 11 0.21
12 5 0.09
13 3 0.06
ACGTcount: A:0.84, C:0.08, G:0.05, T:0.03
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:8325999 original size:23 final size:20
Alignment explanation
Indices: 8325943--8326016 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 20
8325933 TAAAATTTTC
*
8325943 AAAAAAACAAAAAAAA--AA
1 AAAAAAAAAAAAAAAATGAA
** * *
8325961 AAGCAAAGAAACAAAATGAA
1 AAAAAAAAAAAAAAAATGAA
8325981 ACAAAACAAAACAAAAAAATGAA
1 A-AAAA-AAAA-AAAAAAATGAA
8326004 AAAAAAAAAAAAA
1 AAAAAAAAAAAAA
8326017 CCCAAAAGCC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
18 12 0.28
20 7 0.16
21 6 0.14
22 7 0.16
23 11 0.26
ACGTcount: A:0.84, C:0.08, G:0.05, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAAAAAAAATGAA
Found at i:8329984 original size:27 final size:28
Alignment explanation
Indices: 8329928--8329984 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
8329918 GATTCTTTGT
*
8329928 AAGTTTAAAATAAAAATATATTACTTTA
1 AAGTTTAAAATAAAAATATATTACTATA
8329956 AAGTTTAAAATAAAAA-ATATATA-TATA
1 AAGTTTAAAATAAAAATATAT-TACTATA
8329983 AA
1 AA
8329985 ACTAAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (28 bp):
AAGTTTAAAATAAAAATATATTACTATA
Found at i:8330089 original size:40 final size:40
Alignment explanation
Indices: 8330034--8330111 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
8330024 TTCAAATGAC
*
8330034 TAAATATTTTTATTCTTATATCATAATTTTTAATTTATAT
1 TAAATATTTTTATTCTTATATCATAAATTTTAATTTATAT
8330074 TAAATATTTTTATTCTTATATCATAAATTTTAATTTAT
1 TAAATATTTTTATTCTTATATCATAAATTTTAATTTAT
8330112 CTAATTACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (40 bp):
TAAATATTTTTATTCTTATATCATAAATTTTAATTTATAT
Found at i:8330103 original size:21 final size:21
Alignment explanation
Indices: 8330039--8330104 Score: 84
Period size: 20 Copynumber: 3.2 Consensus size: 21
8330029 ATGACTAAAT
8330039 ATTTTTATTCTTATATCAT-A
1 ATTTTTATTCTTATATCATAA
* *
8330059 ATTTTTAAT-TTATATTA-AA
1 ATTTTTATTCTTATATCATAA
8330078 TATTTTTATTCTTATATCATAA
1 -ATTTTTATTCTTATATCATAA
8330100 ATTTT
1 ATTTT
8330105 AATTTATCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 8 0.21
20 16 0.42
21 12 0.32
22 2 0.05
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTTTATTCTTATATCATAA
Found at i:8338436 original size:2 final size:2
Alignment explanation
Indices: 8338429--8338474 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8338419 AAACACCCAA
8338429 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8338471 CT CT
1 CT CT
8338475 AACTGCTTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8339261 original size:2 final size:2
Alignment explanation
Indices: 8339256--8339287 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8339246 ACTATATAAA
*
8339256 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8339288 CAGGCGTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Done.