Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 39 of 160
Found at i:9213330 original size:14 final size:14
Alignment explanation
Indices: 9213313--9213342 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9213303 TATTACTATT
*
9213313 TTAAAGTTTTTATA
1 TTAAAATTTTTATA
9213327 TTAAAATTTTTATA
1 TTAAAATTTTTATA
9213341 TT
1 TT
9213343 TTTAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (14 bp):
TTAAAATTTTTATA
Found at i:9213368 original size:23 final size:23
Alignment explanation
Indices: 9213340--9213385 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
9213330 AAATTTTTAT
*
9213340 ATTTTTAATATTTCAATAATAAAG
1 ATTTTGAATATTT-AATAATAAAG
*
9213364 ATTTTGTATATTTAATAATAAA
1 ATTTTGAATATTTAATAATAAA
9213386 TCCTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTTTGAATATTTAATAATAAAG
Found at i:9213534 original size:21 final size:20
Alignment explanation
Indices: 9213492--9213535 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
9213482 TCAAATCAAC
9213492 AAAAAATCAATACTGTTTAA
1 AAAAAATCAATACTGTTTAA
*
9213512 AAAAAATCCATAACT-TTTAA
1 AAAAAATCAAT-ACTGTTTAA
9213532 AAAA
1 AAAA
9213536 TATTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAAATCAATACTGTTTAA
Found at i:9217141 original size:10 final size:11
Alignment explanation
Indices: 9217116--9217140 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9217106 TTTTTTGTAG
9217116 TTTTATTTAAT
1 TTTTATTTAAT
9217127 TTTTATTTAAT
1 TTTTATTTAAT
9217138 TTT
1 TTT
9217141 AGTTATTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATTTAAT
Found at i:9217939 original size:24 final size:20
Alignment explanation
Indices: 9217927--9217974 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
9217917 GTTAATACTA
9217927 AATAATAAATTTATTAATAT
1 AATAATAAATTTATTAATAT
*
9217947 AATAATATA-TTATT-ATAT
1 AATAATAAATTTATTAATAT
*
9217965 AATATTAAAT
1 AATAATAAAT
9217975 AAATAACAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 11 0.46
19 5 0.21
20 8 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAATAAATTTATTAATAT
Found at i:9219770 original size:22 final size:21
Alignment explanation
Indices: 9219706--9219807 Score: 71
Period size: 22 Copynumber: 4.7 Consensus size: 21
9219696 TGATTTATAT
* *
9219706 GACCTCCAAGCATAATTCCCAA
1 GACCT-CAGGCATAATTCCTAA
* * *
9219728 CACCTCCGGACATAATCCCTAA
1 GACCTCAGG-CATAATTCCTAA
*
9219750 AACCTCTAGGCATAATTCCTAA
1 GACCTC-AGGCATAATTCCTAA
* * **
9219772 GA-CTCGGGCATGATTTATAA
1 GACCTCAGGCATAATTCCTAA
9219792 GACCTCTAGGCATAAT
1 GACCTC-AGGCATAAT
9219808 CTTCAAGATT
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
20 13 0.21
21 8 0.13
22 38 0.62
23 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (21 bp):
GACCTCAGGCATAATTCCTAA
Found at i:9219802 original size:42 final size:44
Alignment explanation
Indices: 9219692--9219807 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 44
9219682 AAGACATTTA
* * *
9219692 GGCATGATTTATATGACCTCCAAGCATAATTCCCAACACCTCCG
1 GGCATGATTTATAAGACCTCTAGGCATAATTCCCAACACCTCCG
* * *** * * *
9219736 GACATAATCCCTAAAACCTCTAGGCATAATTCCTAAGA-CT-CG
1 GGCATGATTTATAAGACCTCTAGGCATAATTCCCAACACCTCCG
9219778 GGCATGATTTATAAGACCTCTAGGCATAAT
1 GGCATGATTTATAAGACCTCTAGGCATAAT
9219808 CTTCAAGATT
Statistics
Matches: 55, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
42 26 0.47
43 2 0.04
44 27 0.49
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (44 bp):
GGCATGATTTATAAGACCTCTAGGCATAATTCCCAACACCTCCG
Found at i:9219893 original size:43 final size:44
Alignment explanation
Indices: 9219822--9219917 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 44
9219812 AAGATTTTGA
**
9219822 GCATAATCTCCAAGACCTCTAAGTATGATTTATAAAACCTCTAG
1 GCATAATCTCCAAGACCTCTAAACATGATTTATAAAACCTCTAG
* * * *
9219866 GCATAAT-TCCTAGACCTTTAAACATGATTTTTAAGACCT-TCAG
1 GCATAATCTCCAAGACCTCTAAACATGATTTATAAAACCTCT-AG
*
9219909 GCACAATCT
1 GCATAATCT
9219918 TAAAAAAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.02
43 34 0.79
44 8 0.19
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (44 bp):
GCATAATCTCCAAGACCTCTAAACATGATTTATAAAACCTCTAG
Found at i:9220308 original size:22 final size:22
Alignment explanation
Indices: 9220240--9220350 Score: 64
Period size: 22 Copynumber: 5.0 Consensus size: 22
9220230 CCACTTGGTG
* *
9220240 TAATATTCAAGACTTCTAAGCA
1 TAATCTTCAAGACTTCTAGGCA
* * * *
9220262 TGAT-TTATAAGATCTT-TGGGTA
1 TAATCTT-CAAGA-CTTCTAGGCA
9220284 TAATCTTCAAGACTTCTAGGCA
1 TAATCTTCAAGACTTCTAGGCA
* * * * * *
9220306 TAATTTTTAAAACCTCCAAGCA
1 TAATCTTCAAGACTTCTAGGCA
* *
9220328 TAATCTCCAAGACCTCTAGGCA
1 TAATCTTCAAGACTTCTAGGCA
9220350 T
1 T
9220351 TATTTGAAAG
Statistics
Matches: 64, Mismatches: 21, Indels: 8
0.69 0.23 0.09
Matches are distributed among these distances:
21 5 0.08
22 54 0.84
23 5 0.08
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (22 bp):
TAATCTTCAAGACTTCTAGGCA
Found at i:9220399 original size:22 final size:22
Alignment explanation
Indices: 9220380--9220431 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
9220370 AATAATCTTC
9220380 AAGACCTCCAAACATGATCTCT
1 AAGACCTCCAAACATGATCTCT
* * *
9220402 AAGACCTCCAGACATGATATGT
1 AAGACCTCCAAACATGATCTCT
9220424 AAGACCTC
1 AAGACCTC
9220432 ATGGTATGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.21
Consensus pattern (22 bp):
AAGACCTCCAAACATGATCTCT
Found at i:9220571 original size:37 final size:38
Alignment explanation
Indices: 9220475--9220578 Score: 113
Period size: 38 Copynumber: 2.8 Consensus size: 38
9220465 TCAGATTTGA
* * *
9220475 TCATTTAAAATTTCAAGCCTCAGTTGTGGGGGAAGTTT
1 TCATTTAAAGTTTCAAGCCTTAGTTGTGGGGGAAGTCT
* * *
9220513 TCATTTAAAGTTTTAAACCTTAGTTGTGGGGAGCA-TCT
1 TCATTTAAAGTTTCAAGCCTTAGTTGTGGGG-GAAGTCT
* *
9220551 T-ATTTAAAGTTTCATGCCTTAGCTGTGG
1 TCATTTAAAGTTTCAAGCCTTAGTTGTGG
9220579 ATGAACTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
37 23 0.42
38 30 0.55
39 2 0.04
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (38 bp):
TCATTTAAAGTTTCAAGCCTTAGTTGTGGGGGAAGTCT
Found at i:9221462 original size:17 final size:17
Alignment explanation
Indices: 9221436--9221470 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9221426 TCTTTTTTTA
9221436 TATTTATTACATGATATT
1 TATTTATTACATGA-ATT
9221454 TATTT-TTACATGAATT
1 TATTTATTACATGAATT
9221470 T
1 T
9221471 GCATGACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 8 0.47
18 5 0.29
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (17 bp):
TATTTATTACATGAATT
Found at i:9221576 original size:24 final size:24
Alignment explanation
Indices: 9221542--9221798 Score: 192
Period size: 24 Copynumber: 10.7 Consensus size: 24
9221532 TCGCATGATT
* *
9221542 TATTTAATTGCATGATTATTAACA
1 TATTTATTTGCATGATTATTAATA
* *
9221566 TATTTATTTGCATGACTACCTAATA
1 TATTTATTTGCATGATTA-TTAATA
* *
9221591 TATTTATCTGTGGATTGTATGTTATTAAAA
1 TATTTAT-T-TGCA-TG-A--TTATTAATA
*
9221621 TA-TTATTTTACATG---ATTAATA
1 TATTTA-TTTGCATGATTATTAATA
**
9221642 TATTTATTTATATGATTTATT-A-A
1 TATTTATTTGCATGA-TTATTAATA
9221665 TA--TATTTGCATGATTATTAATA
1 TATTTATTTGCATGATTATTAATA
*
9221687 TATTTAATTGCATGATTATTAATA
1 TATTTATTTGCATGATTATTAATA
* * *
9221711 TATTTATTTGTATGATTA-TATTT
1 TATTTATTTGCATGATTATTAATA
9221734 TATTTGA-TTGCATGATTATTAATA
1 TATTT-ATTTGCATGATTATTAATA
* * *
9221758 TATTTAATTACTTGATTATTAATA
1 TATTTATTTGCATGATTATTAATA
* *
9221782 TGTTTATTTGTATGATT
1 TATTTATTTGCATGATT
9221799 TCTTGATTAT
Statistics
Matches: 184, Mismatches: 29, Indels: 40
0.73 0.11 0.16
Matches are distributed among these distances:
20 5 0.03
21 25 0.14
22 6 0.03
23 22 0.12
24 88 0.48
25 14 0.08
26 1 0.01
27 5 0.03
28 4 0.02
29 5 0.03
30 7 0.04
31 2 0.01
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (24 bp):
TATTTATTTGCATGATTATTAATA
Found at i:9221644 original size:21 final size:22
Alignment explanation
Indices: 9221614--9221692 Score: 69
Period size: 21 Copynumber: 3.8 Consensus size: 22
9221604 ATTGTATGTT
*
9221614 ATTAAAATATTAT-TTTACATG
1 ATTAATATATTATATTTACATG
*
9221635 ATTAATATATT-TATTTATATG
1 ATTAATATATTATATTTACATG
* * *
9221656 ATTTAT-TAATATATTTGCATG
1 ATTAATATATTATATTTACATG
*
9221677 ATT-AT-TAATATATTTA
1 ATTAATATATTATATTTA
9221693 ATTGCATGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
20 16 0.33
21 33 0.67
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (22 bp):
ATTAATATATTATATTTACATG
Found at i:9221671 original size:12 final size:12
Alignment explanation
Indices: 9221635--9221671 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
9221625 ATTTTACATG
9221635 ATTAATATATTT
1 ATTAATATATTT
*
9221647 ATTTATATGATTT
1 ATTAATAT-ATTT
9221660 ATTAATATATTT
1 ATTAATATATTT
9221672 GCATGATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (12 bp):
ATTAATATATTT
Found at i:9221748 original size:47 final size:48
Alignment explanation
Indices: 9221635--9221843 Score: 167
Period size: 47 Copynumber: 4.3 Consensus size: 48
9221625 ATTTTACATG
* **
9221635 ATTAATATATTTATTTATATGATTTATT-A-ATA--TATTTGCATGATT
1 ATTAATATATTTAATTGCATGA-TTATTAATATATTTATTTGCATGATT
*
9221680 ATTAATATATTTAATTGCATGATTATTAATATATTTATTTGTATGATT
1 ATTAATATATTTAATTGCATGATTATTAATATATTTATTTGCATGATT
* * * * * *
9221728 A-TATTTTATTTGATTGCATGATTATTAATATATTTAATTACTTGATT
1 ATTAATATATTTAATTGCATGATTATTAATATATTTATTTGCATGATT
* * * * *
9221775 ATTAATATGTTTATTTGTATGATTTCTTGATTATTAATATATTTAATTACTTGATT
1 ATTAATA----TA-TT-TA--ATTGCATGATTATTAATATATTTATTTGCATGATT
9221831 ATTAATATATTTA
1 ATTAATATATTTA
9221844 TTTGTGTGAT
Statistics
Matches: 135, Mismatches: 16, Indels: 21
0.78 0.09 0.12
Matches are distributed among these distances:
44 5 0.04
45 20 0.15
46 3 0.02
47 40 0.30
48 16 0.12
50 2 0.01
51 2 0.01
52 4 0.03
53 2 0.01
54 1 0.01
56 40 0.30
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.56
Consensus pattern (48 bp):
ATTAATATATTTAATTGCATGATTATTAATATATTTATTTGCATGATT
Found at i:9221763 original size:71 final size:69
Alignment explanation
Indices: 9221635--9221799 Score: 242
Period size: 71 Copynumber: 2.4 Consensus size: 69
9221625 ATTTTACATG
* *
9221635 ATTAATATATTTATTTATATGATTTATTAATATATTTGCATGATTATTAATATATTTAATTGCAT
1 ATTAATATATTTATTTGTATGATTTATTAATATATTTGCATGATTATTAATATATTTAATTACAT
9221700 GATT
66 GATT
* *
9221704 ATTAATATATTTATTTGTATGATTATATT-TTATTTGATTGCATGATTATTAATATATTTAATTA
1 ATTAATATATTTATTTGTATGATT-TATTAATATAT--TTGCATGATTATTAATATATTTAATTA
*
9221768 CTTGATT
63 CATGATT
*
9221775 ATTAATATGTTTATTTGTATGATTT
1 ATTAATATATTTATTTGTATGATTT
9221800 CTTGATTATT
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
69 27 0.31
70 5 0.06
71 55 0.63
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (69 bp):
ATTAATATATTTATTTGTATGATTTATTAATATATTTGCATGATTATTAATATATTTAATTACAT
GATT
Found at i:9221798 original size:56 final size:56
Alignment explanation
Indices: 9221738--9221854 Score: 198
Period size: 56 Copynumber: 2.1 Consensus size: 56
9221728 ATATTTTATT
*
9221738 TGATTGCATGATTATTAATATATTTAATTACTTGATTATTAATATGTTTATTTGTA
1 TGATTGCATGATTATTAATATATTTAATTACTTGATTATTAATATATTTATTTGTA
* * *
9221794 TGATTTCTTGATTATTAATATATTTAATTACTTGATTATTAATATATTTATTTGTG
1 TGATTGCATGATTATTAATATATTTAATTACTTGATTATTAATATATTTATTTGTA
9221850 TGATT
1 TGATT
9221855 ATATTTGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (56 bp):
TGATTGCATGATTATTAATATATTTAATTACTTGATTATTAATATATTTATTTGTA
Found at i:9221830 original size:32 final size:32
Alignment explanation
Indices: 9221768--9221830 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
9221758 TATTTAATTA
* **
9221768 CTTGATTATTAATATGTTTATTTGTATGATTT
1 CTTGATTATTAATATATTTATTACTATGATTT
9221800 CTTGATTATTAATATATTTAATTACT-TGATT
1 CTTGATTATTAATATATTT-ATTACTATGATT
9221831 ATTAATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.57
Consensus pattern (32 bp):
CTTGATTATTAATATATTTATTACTATGATTT
Found at i:9221859 original size:18 final size:18
Alignment explanation
Indices: 9221836--9221888 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
9221826 TGATTATTAA
**
9221836 TATATTTATTTGTGTGAT
1 TATATTTATTTGCATGAT
9221854 TATATTTGA-TTGCATGAT
1 TATATTT-ATTTGCATGAT
*
9221872 TATATATATTTGCATGA
1 TATATTTATTTGCATGA
9221889 ATGGTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 1 0.03
18 28 0.93
19 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.53
Consensus pattern (18 bp):
TATATTTATTTGCATGAT
Found at i:9221991 original size:17 final size:17
Alignment explanation
Indices: 9221942--9221992 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
9221932 TTGTATGATA
9221942 ATTT-TTGCATGGTATG
1 ATTTATTGCATGGTATG
* *
9221958 ATTTTATAT-TATTGTATG
1 A-TTTAT-TGCATGGTATG
9221976 ATTTATTGCATGGTATG
1 ATTTATTGCATGGTATG
9221993 CTTTTATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
16 2 0.07
17 15 0.56
18 9 0.33
19 1 0.04
ACGTcount: A:0.24, C:0.04, G:0.20, T:0.53
Consensus pattern (17 bp):
ATTTATTGCATGGTATG
Found at i:9221992 original size:35 final size:35
Alignment explanation
Indices: 9221926--9222046 Score: 145
Period size: 35 Copynumber: 3.4 Consensus size: 35
9221916 AAGATCATTA
*
9221926 ATATTATTGTATGATAATTTTTGCATGGTATGATTTT
1 ATATTATTGTATGAT--TTATTGCATGGTATGATTTT
*
9221963 ATATTATTGTATGATTTATTGCATGGTATGCTTTT
1 ATATTATTGTATGATTTATTGCATGGTATGATTTT
* ** * * *
9221998 ATATTATTGCACAATTTATCGTATGATATGATTTT
1 ATATTATTGTATGATTTATTGCATGGTATGATTTT
9222033 AT-TTATTGTATGAT
1 ATATTATTGTATGAT
9222047 ATAGCTTTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
34 9 0.12
35 48 0.67
37 15 0.21
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (35 bp):
ATATTATTGTATGATTTATTGCATGGTATGATTTT
Found at i:9222055 original size:22 final size:22
Alignment explanation
Indices: 9222011--9222069 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
9222001 TTATTGCACA
* *
9222011 ATTTATCGTATGATATGATTTT
1 ATTTATTGTATGATATGACTTT
9222033 ATTTATTGTATGATAT-AGCTTT
1 ATTTATTGTATGATATGA-CTTT
*
9222055 ATATTATTGCATGAT
1 AT-TTATTGTATGAT
9222070 TTATTACATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 20 0.62
23 11 0.34
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.53
Consensus pattern (22 bp):
ATTTATTGTATGATATGACTTT
Found at i:9222085 original size:57 final size:58
Alignment explanation
Indices: 9221976--9222110 Score: 154
Period size: 57 Copynumber: 2.3 Consensus size: 58
9221966 TTATTGTATG
* *
9221976 ATTTATTGCATGGTATGCTTTTATATTATTGCACAATTTATCGTATGATATGATTT-T
1 ATTTATTGCATGATATGCTTTTATATTATTGCACAATTTATCATATGATATGATTTAT
* **
9222033 ATTTATTGTATGATATAGC-TTTATATTATTGCATGATTTATTACAT-TG-TATGATTTAAT
1 ATTTATTGCATGATAT-GCTTTTATATTATTGCACAATTTA-T-CATATGATATGATTT-AT
9222092 ATTTATTGCATGAT-TGCTT
1 ATTTATTGCATGATATGCTT
9222111 GATATTTTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
57 43 0.65
58 7 0.11
59 16 0.24
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.52
Consensus pattern (58 bp):
ATTTATTGCATGATATGCTTTTATATTATTGCACAATTTATCATATGATATGATTTAT
Found at i:9224943 original size:8 final size:8
Alignment explanation
Indices: 9224930--9225051 Score: 69
Period size: 8 Copynumber: 16.1 Consensus size: 8
9224920 TTTAAGGTTT
9224930 GTTTTAGG
1 GTTTTAGG
**
9224938 GTTTTAAA
1 GTTTTAGG
*
9224946 GTTTTAAG
1 GTTTTAGG
**
9224954 GTTTTAAA
1 GTTTTAGG
9224962 G-TTTAGG
1 GTTTTAGG
*
9224969 TTTTTAGG
1 GTTTTAGG
*
9224977 G-TTTAAG
1 GTTTTAGG
9224984 G-TTTAGG
1 GTTTTAGG
* *
9224991 ATCTTAGG
1 GTTTTAGG
9224999 G-TTTAGG
1 GTTTTAGG
*
9225006 G-TTTAGA
1 GTTTTAGG
* *
9225013 ATTTTAAG
1 GTTTTAGG
9225021 G-TTTAGG
1 GTTTTAGG
9225028 GTTTTAGG
1 GTTTTAGG
* *
9225036 ATATTAGG
1 GTTTTAGG
9225044 G-TTTAGG
1 GTTTTAGG
9225051 G
1 G
9225052 CGGACTTTCG
Statistics
Matches: 86, Mismatches: 24, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
7 38 0.44
8 48 0.56
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (8 bp):
GTTTTAGG
Found at i:9224980 original size:15 final size:14
Alignment explanation
Indices: 9224952--9225051 Score: 67
Period size: 15 Copynumber: 6.8 Consensus size: 14
9224942 TAAAGTTTTA
**
9224952 AGGTTTTAAAGTTT
1 AGGTTTTAGGGTTT
9224966 AGGTTTTTAGGGTTT
1 AGG-TTTTAGGGTTT
*
9224981 AAGG-TTTAGGATCTT
1 -AGGTTTTAGGGT-TT
*
9224996 AGGGTTTAGGGTTT
1 AGGTTTTAGGGTTT
* *
9225010 AGAATTTTAAGGTTT
1 AG-GTTTTAGGGTTT
*
9225025 AGGGTTTTAGGATATT
1 A-GGTTTTAGGGT-TT
*
9225041 AGGGTTTAGGG
1 AGGTTTTAGGG
9225052 CGGACTTTCG
Statistics
Matches: 67, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
14 17 0.25
15 43 0.64
16 7 0.10
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (14 bp):
AGGTTTTAGGGTTT
Found at i:9224981 original size:7 final size:7
Alignment explanation
Indices: 9224971--9225051 Score: 72
Period size: 7 Copynumber: 11.0 Consensus size: 7
9224961 AGTTTAGGTT
9224971 TTTAGGG
1 TTTAGGG
*
9224978 TTTAAGG
1 TTTAGGG
*
9224985 TTTAGGA
1 TTTAGGG
9224992 TCTTAGGG
1 T-TTAGGG
9225000 TTTAGGG
1 TTTAGGG
**
9225007 TTTAGAAT
1 TTTAG-GG
*
9225015 TTTAAGG
1 TTTAGGG
9225022 TTTAGGG
1 TTTAGGG
*
9225029 TTTTAGGA
1 -TTTAGGG
9225037 TATTAGGG
1 T-TTAGGG
9225045 TTTAGGG
1 TTTAGGG
9225052 CGGACTTTCG
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
7 36 0.62
8 22 0.38
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:9224981 original size:22 final size:22
Alignment explanation
Indices: 9224970--9225048 Score: 95
Period size: 22 Copynumber: 3.5 Consensus size: 22
9224960 AAGTTTAGGT
9224970 TTTTAGGGTTTAAGGTTTAGGA
1 TTTTAGGGTTTAAGGTTTAGGA
* * *
9224992 TCTTAGGGTTTAGGGTTTAGAA
1 TTTTAGGGTTTAAGGTTTAGGA
* *
9225014 TTTTAAGGTTTAGGGTTTTAGGA
1 TTTTAGGGTTTAAGG-TTTAGGA
*
9225037 TATTAGGGTTTA
1 TTTTAGGGTTTA
9225049 GGGCGGACTT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 32 0.67
23 16 0.33
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (22 bp):
TTTTAGGGTTTAAGGTTTAGGA
Found at i:9227799 original size:13 final size:12
Alignment explanation
Indices: 9227751--9227802 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
9227741 CAATGAGCTC
*
9227751 TTTTTTTTTTTCC
1 TTTTTTTTTTT-A
* *
9227764 TTTTTGTTCTTA
1 TTTTTTTTTTTA
9227776 TTTTTGTTTTTTA
1 TTTTT-TTTTTTA
9227789 TTTTTTATTTTTA
1 TTTTTT-TTTTTA
9227802 T
1 T
9227803 GCCTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
12 6 0.19
13 26 0.81
ACGTcount: A:0.08, C:0.06, G:0.04, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:9228432 original size:20 final size:19
Alignment explanation
Indices: 9228407--9228455 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
9228397 GTCATTAGGG
*
9228407 TTTTTTATTTTTACTTTTTA
1 TTTTTTATTTTT-CTTTCTA
9228427 TTTTTTATTTTTCTTTCTA
1 TTTTTTATTTTTCTTTCTA
9228446 TTTATTTATT
1 TTT-TTTATT
9228456 AGAAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTATTTTTCTTTCTA
Found at i:9228717 original size:7 final size:7
Alignment explanation
Indices: 9228673--9228717 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
9228663 TTTCAACTAC
9228673 TTAAAAA
1 TTAAAAA
*
9228680 ATAAGAAA
1 TTAA-AAA
9228688 -TAAAAA
1 TTAAAAA
9228694 TTAAAAA
1 TTAAAAA
9228701 GTTAAAAA
1 -TTAAAAA
9228709 TTAAAAA
1 TTAAAAA
9228716 TT
1 TT
9228718 TGGTACATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
6 3 0.09
7 21 0.62
8 10 0.29
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (7 bp):
TTAAAAA
Found at i:9229050 original size:2 final size:2
Alignment explanation
Indices: 9229043--9229076 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
9229033 TATAGTGCCA
* *
9229043 AT AT AT AT AT AT AT AT AG AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9229077 TGGTTATCGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:9229501 original size:26 final size:27
Alignment explanation
Indices: 9229445--9229507 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
9229435 TATATTATAA
*
9229445 TAAAATATTTAATATGATATTTAAATTT
1 TAAAATTTTTAATATGATATTTAAA-TT
*
9229473 TAAAATTTTTAATATGATATTTGAA-T
1 TAAAATTTTTAATATGATATTTAAATT
9229499 TAAAATTTT
1 TAAAATTTT
9229508 ATATTAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 10 0.30
28 23 0.70
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (27 bp):
TAAAATTTTTAATATGATATTTAAATT
Found at i:9229640 original size:29 final size:29
Alignment explanation
Indices: 9229603--9229661 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
9229593 AATTAATAAA
*
9229603 TTTATAATTAAAATATCAAATTAAAAATT
1 TTTAAAATTAAAATATCAAATTAAAAATT
* * * *
9229632 TTTAAAATTTAATTATCACATTAAATATT
1 TTTAAAATTAAAATATCAAATTAAAAATT
9229661 T
1 T
9229662 CATTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (29 bp):
TTTAAAATTAAAATATCAAATTAAAAATT
Found at i:9233162 original size:24 final size:23
Alignment explanation
Indices: 9233126--9233178 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
9233116 TTATTTTAAC
*
9233126 TATTATTAAAATAAATAGTTTTGA
1 TATTATTAAAATAAATAGTATT-A
9233150 TATT-TTAATAATAAATAGTATTA
1 TATTATTAA-AATAAATAGTATTA
9233173 TATTAT
1 TATTAT
9233179 CATTTTAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 9 0.35
24 17 0.65
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (23 bp):
TATTATTAAAATAAATAGTATTA
Found at i:9233464 original size:25 final size:23
Alignment explanation
Indices: 9233417--9233475 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 23
9233407 TTTAATAGTA
9233417 AATATTTTTAATATAAAACTA-TT
1 AATA-TTTTAATATAAAACTATTT
*
9233440 ATTATTTTAATAGTATAAACATATTT
1 AATATTTTAATA-TA-AAAC-TATTT
9233466 AATATTTTAA
1 AATATTTTAA
9233476 AAATTCATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.27
23 5 0.17
24 4 0.13
25 2 0.07
26 11 0.37
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (23 bp):
AATATTTTAATATAAAACTATTT
Found at i:9233571 original size:21 final size:21
Alignment explanation
Indices: 9233513--9233568 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
9233503 TATATTAATG
9233513 AAAATAATATTTTAATAACAA
1 AAAATAATATTTTAATAACAA
9233534 AAAATAATATTTTAATAAC-A
1 AAAATAATATTTTAATAACAA
* *
9233554 ATAATACTATTTTAA
1 AAAATAATATTTTAA
9233569 ATATGTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATAATATTTTAATAACAA
Found at i:9233672 original size:47 final size:50
Alignment explanation
Indices: 9233578--9233673 Score: 126
Period size: 47 Copynumber: 2.0 Consensus size: 50
9233568 AATATGTTAA
* *
9233578 AATATTAATATACAATATTTATTAATATTAAATAATATTTTTCAAATATCT
1 AATATTAATATA-AATATTTATTAATATTAAATAATATTATTAAAATATCT
* *
9233629 AATATTAATAT-AATA-TT-TTGATATTAAATATTATTATTAAAATAT
1 AATATTAATATAAATATTTATTAATATTAAATAATATTATTAAAATAT
9233674 TACTATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
47 24 0.59
48 2 0.05
49 4 0.10
51 11 0.27
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (50 bp):
AATATTAATATAAATATTTATTAATATTAAATAATATTATTAAAATATCT
Found at i:9233733 original size:24 final size:22
Alignment explanation
Indices: 9233706--9233762 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 22
9233696 TAAATTTTTT
9233706 AATATTTTTAATATTTCAATAATA
1 AATATTTTT-ATATTT-AATAATA
9233730 AATATTTTGTATATTTAATAATA
1 AATATTTT-TATATTTAATAATA
9233753 AATCATTTTT
1 AAT-ATTTTT
9233763 TTATAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 11 0.35
24 19 0.61
25 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (22 bp):
AATATTTTTATATTTAATAATA
Found at i:9233888 original size:20 final size:22
Alignment explanation
Indices: 9233850--9233895 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
9233840 TCAAATCAAC
* *
9233850 AAAAAATCTATACTGTTTTA-A
1 AAAAAATCCATAATGTTTTATA
9233871 AAAAAATCCATAAT-TTTTATA
1 AAAAAATCCATAATGTTTTATA
9233892 AAAA
1 AAAA
9233896 TATTTTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAAAATCCATAATGTTTTATA
Found at i:9233915 original size:15 final size:15
Alignment explanation
Indices: 9233882--9233928 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
9233872 AAAAATCCAT
9233882 AATTTTTAT-AAA-A
1 AATTTTTATGAAATA
9233895 ATATTTTT-TGAAAGTA
1 A-ATTTTTATGAAA-TA
9233911 AATTTTTATGAAATA
1 AATTTTTATGAAATA
9233926 AAT
1 AAT
9233929 GGAGTATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 2 0.07
14 9 0.31
15 11 0.38
16 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (15 bp):
AATTTTTATGAAATA
Found at i:9235581 original size:2 final size:2
Alignment explanation
Indices: 9235574--9235614 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
9235564 GTTAACTTTG
9235574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9235615 AAGGTAAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9235777 original size:16 final size:16
Alignment explanation
Indices: 9235749--9235781 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9235739 TAAATATATT
9235749 AAAATTAATAATTAAA
1 AAAATTAATAATTAAA
9235765 AAAATGTAA-AATTAAA
1 AAAAT-TAATAATTAAA
9235781 A
1 A
9235782 TTTTTATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAATTAATAATTAAA
Found at i:9237581 original size:14 final size:14
Alignment explanation
Indices: 9237558--9237590 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
9237548 TCTTTAATTT
*
9237558 TTATTTACTTTTAG
1 TTATTAACTTTTAG
9237572 TTATTAACTTTTAG
1 TTATTAACTTTTAG
9237586 TTATT
1 TTATT
9237591 GGCTTAGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (14 bp):
TTATTAACTTTTAG
Found at i:9238372 original size:20 final size:18
Alignment explanation
Indices: 9238347--9238388 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 18
9238337 GTTAATATTA
9238347 AATAATATATTTATTAATAT
1 AATAATATA-TTATT-ATAT
9238367 AATAATATATTATTATAT
1 AATAATATATTATTATAT
9238385 AATA
1 AATA
9238389 TTAAATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 8 0.36
19 5 0.23
20 9 0.41
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AATAATATATTATTATAT
Found at i:9239496 original size:41 final size:40
Alignment explanation
Indices: 9239451--9239527 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 40
9239441 GATTTAAATA
* *
9239451 ATTTATTCATTTATTTAACAAGTTAAATTATTTATTTGTTT
1 ATTTATTCACTTATTTAACAAG-TAAATGATTTATTTGTTT
* *
9239492 ATTTATTTACTTATTTAACATGTAAATGATTTATTT
1 ATTTATTCACTTATTTAACAAGTAAATGATTTATTT
9239528 AATTTTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 13 0.41
41 19 0.59
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (40 bp):
ATTTATTCACTTATTTAACAAGTAAATGATTTATTTGTTT
Found at i:9240223 original size:16 final size:17
Alignment explanation
Indices: 9240198--9240237 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
9240188 TTATTTTATT
9240198 TATA-AAAATT-TAAAA
1 TATATAAAATTATAAAA
9240213 TATATAAAATTAATAAAA
1 TATATAAAATT-ATAAAA
9240231 TATATAA
1 TATATAA
9240238 TTTAGTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
18 12 0.55
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TATATAAAATTATAAAA
Found at i:9240540 original size:41 final size:41
Alignment explanation
Indices: 9240490--9240598 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 41
9240480 AAAATTTGGA
*
9240490 AAATAATTATTTTCATAATA-ATTTCAAATTGTAGACTTTTG
1 AAATAATTATTTTCATAATATATTTCAAATTATAGA-TTTTG
* * *
9240531 AAATGATTATTTTCATAATATATTTGAAATTATAGATTTTT
1 AAATAATTATTTTCATAATATATTTCAAATTATAGATTTTG
* *
9240572 AAAAAATTATTTTCATAGTATATTTCA
1 AAATAATTATTTTCATAATATATTTCA
9240599 TAATAAACTA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
41 46 0.78
42 13 0.22
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (41 bp):
AAATAATTATTTTCATAATATATTTCAAATTATAGATTTTG
Found at i:9253797 original size:16 final size:14
Alignment explanation
Indices: 9253776--9253828 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 14
9253766 AATTACAAGT
9253776 ATTTAAATAGACTAAA
1 ATTTAAAT-GA-TAAA
*
9253792 ATTTAAATTATAAA
1 ATTTAAATGATAAA
*
9253806 ATTTAAACTTCATAAA
1 ATTTAAA--TGATAAA
9253822 ATTTAAA
1 ATTTAAA
9253829 CTTAAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 11 0.33
15 1 0.03
16 21 0.64
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (14 bp):
ATTTAAATGATAAA
Found at i:9253810 original size:30 final size:29
Alignment explanation
Indices: 9253776--9253843 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
9253766 AATTACAAGT
*
9253776 ATTTAAATAGACTAAAATTTAAA-TTATAAA
1 ATTTAAATACA-TAAAATTTAAACTTA-AAA
*
9253806 ATTTAAACTTCATAAAATTTAAACTTAAAA
1 ATTTAAA-TACATAAAATTTAAACTTAAAA
*
9253836 ATCTAAAT
1 ATTTAAAT
9253844 CTGTTAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
29 1 0.03
30 27 0.82
31 5 0.15
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.37
Consensus pattern (29 bp):
ATTTAAATACATAAAATTTAAACTTAAAA
Found at i:9253829 original size:16 final size:15
Alignment explanation
Indices: 9253788--9253842 Score: 78
Period size: 14 Copynumber: 3.7 Consensus size: 15
9253778 TTAAATAGAC
9253788 TAAAATTTAAA-TTA
1 TAAAATTTAAACTTA
9253802 TAAAATTTAAACTTCA
1 TAAAATTTAAACTT-A
9253818 TAAAATTTAAACTTA
1 TAAAATTTAAACTTA
*
9253833 -AAAATCTAAA
1 TAAAATTTAAA
9253843 TCTGTTAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
14 20 0.53
15 3 0.08
16 15 0.39
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.36
Consensus pattern (15 bp):
TAAAATTTAAACTTA
Found at i:9258636 original size:2 final size:2
Alignment explanation
Indices: 9258629--9258675 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
9258619 GTTGAGATTG
9258629 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9258671 TA TA T
1 TA TA T
9258676 TCATTTACAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9264491 original size:29 final size:28
Alignment explanation
Indices: 9264449--9264548 Score: 122
Period size: 29 Copynumber: 3.7 Consensus size: 28
9264439 AAAATTTGGG
9264449 TAATTGCACATAAATTGCACTGTTTTTAT
1 TAATTGCACATAAATTGCACT-TTTTTAT
*
9264478 TAATTGCACATAAATTACAC------AT
1 TAATTGCACATAAATTGCACTTTTTTAT
*
9264500 AAATTGCACATAAATTGCACTATTTTTAT
1 TAATTGCACATAAATTGCACT-TTTTTAT
9264529 TAATTGCACATAAATTGCAC
1 TAATTGCACATAAATTGCAC
9264549 ATAAATTGCA
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
22 20 0.33
29 40 0.67
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (28 bp):
TAATTGCACATAAATTGCACTTTTTTAT
Found at i:9264498 original size:11 final size:11
Alignment explanation
Indices: 9264479--9264650 Score: 128
Period size: 11 Copynumber: 13.7 Consensus size: 11
9264469 TGTTTTTATT
9264479 AATTGCACATA
1 AATTGCACATA
*
9264490 AATTACACATA
1 AATTGCACATA
9264501 AATTGCACATA
1 AATTGCACATA
9264512 AATTGCACTATTTTTA
1 AATTGCAC-A----TA
9264528 TTAATTGCACATA
1 --AATTGCACATA
9264541 AATTGCACATA
1 AATTGCACATA
*
9264552 AATTGCACTGTTTTTATT
1 AATTGCAC-------ATA
9264570 AATTGCACATA
1 AATTGCACATA
*
9264581 AATTACACATA
1 AATTGCACATA
9264592 AATTGCACATA
1 AATTGCACATA
9264603 AATTGCACTATTTTTA
1 AATTGCAC-A----TA
9264619 TTAATTGCACATA
1 --AATTGCACATA
9264632 AATTGCACATA
1 AATTGCACATA
9264643 AATTGCAC
1 AATTGCAC
9264651 TGTTTTTATT
Statistics
Matches: 134, Mismatches: 6, Indels: 42
0.74 0.03 0.23
Matches are distributed among these distances:
11 96 0.72
12 2 0.01
13 4 0.03
16 4 0.03
17 2 0.01
18 26 0.19
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (11 bp):
AATTGCACATA
Found at i:9264499 original size:40 final size:40
Alignment explanation
Indices: 9264490--9264662 Score: 220
Period size: 40 Copynumber: 4.0 Consensus size: 40
9264480 ATTGCACATA
* *
9264490 AATTACACATAAATTGCACATAAATTGCACTATTTTTATT
1 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
9264530 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
1 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
*
9264570 AATTGCACATAAATTACACATAAATTGCACATAAATTGCACTATTTTTATT
1 AATTG-----------CACATAAATTGCACATAAATTGCACTGTTTTTATT
9264621 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
1 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
9264661 AA
1 AA
9264663 ATTCAACTAG
Statistics
Matches: 118, Mismatches: 4, Indels: 22
0.82 0.03 0.15
Matches are distributed among these distances:
40 79 0.67
51 39 0.33
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.39
Consensus pattern (40 bp):
AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATT
Found at i:9264507 original size:51 final size:51
Alignment explanation
Indices: 9264450--9264559 Score: 202
Period size: 51 Copynumber: 2.2 Consensus size: 51
9264440 AAATTTGGGT
*
9264450 AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATA
1 AATTGCACATAAATTGCACTATTTTTATTAATTGCACATAAATTACACATA
*
9264501 AATTGCACATAAATTGCACTATTTTTATTAATTGCACATAAATTGCACATA
1 AATTGCACATAAATTGCACTATTTTTATTAATTGCACATAAATTACACATA
9264552 AATTGCAC
1 AATTGCAC
9264560 TGTTTTTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (51 bp):
AATTGCACATAAATTGCACTATTTTTATTAATTGCACATAAATTACACATA
Found at i:9264562 original size:91 final size:91
Alignment explanation
Indices: 9264450--9264662 Score: 426
Period size: 91 Copynumber: 2.3 Consensus size: 91
9264440 AAATTTGGGT
9264450 AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATAAATTGCACATAAAT
1 AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATAAATTGCACATAAAT
9264515 TGCACTATTTTTATTAATTGCACATA
66 TGCACTATTTTTATTAATTGCACATA
9264541 AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATAAATTGCACATAAAT
1 AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATAAATTGCACATAAAT
9264606 TGCACTATTTTTATTAATTGCACATA
66 TGCACTATTTTTATTAATTGCACATA
9264632 AATTGCACATAAATTGCACTGTTTTTATTAA
1 AATTGCACATAAATTGCACTGTTTTTATTAA
9264663 ATTCAACTAG
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 122 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.39
Consensus pattern (91 bp):
AATTGCACATAAATTGCACTGTTTTTATTAATTGCACATAAATTACACATAAATTGCACATAAAT
TGCACTATTTTTATTAATTGCACATA
Found at i:9264573 original size:29 final size:28
Alignment explanation
Indices: 9264541--9264639 Score: 120
Period size: 29 Copynumber: 3.7 Consensus size: 28
9264531 ATTGCACATA
9264541 AATTGCACATAAATTGCACTGTTTTTATT
1 AATTGCACATAAATTGCACT-TTTTTATT
* *
9264570 AATTGCACATAAATTACAC------ATA
1 AATTGCACATAAATTGCACTTTTTTATT
9264592 AATTGCACATAAATTGCACTATTTTTATT
1 AATTGCACATAAATTGCACT-TTTTTATT
9264621 AATTGCACATAAATTGCAC
1 AATTGCACATAAATTGCAC
9264640 ATAAATTGCA
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
22 20 0.34
29 39 0.66
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.37
Consensus pattern (28 bp):
AATTGCACATAAATTGCACTTTTTTATT
Found at i:9264590 original size:51 final size:51
Alignment explanation
Indices: 9264530--9264650 Score: 224
Period size: 51 Copynumber: 2.4 Consensus size: 51
9264520 TATTTTTATT
*
9264530 AATTGCACATAAATTGCACATAAATTGCACTGTTTTTATTAATTGCACATA
1 AATTGCACATAAATTGCACATAAATTGCACTATTTTTATTAATTGCACATA
*
9264581 AATTACACATAAATTGCACATAAATTGCACTATTTTTATTAATTGCACATA
1 AATTGCACATAAATTGCACATAAATTGCACTATTTTTATTAATTGCACATA
9264632 AATTGCACATAAATTGCAC
1 AATTGCACATAAATTGCAC
9264651 TGTTTTTATT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (51 bp):
AATTGCACATAAATTGCACATAAATTGCACTATTTTTATTAATTGCACATA
Found at i:9267944 original size:20 final size:21
Alignment explanation
Indices: 9267907--9267947 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
9267897 TGTAGACACC
9267907 CAATTGGGTCCAGGCCCAAAT
1 CAATTGGGTCCAGGCCCAAAT
*
9267928 CAATTGGG-CCTGGCCCAAAT
1 CAATTGGGTCCAGGCCCAAAT
9267948 GGGTAAGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (21 bp):
CAATTGGGTCCAGGCCCAAAT
Found at i:9268021 original size:3 final size:3
Alignment explanation
Indices: 9268000--9268043 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
9267990 TTTTCTTTTG
9268000 TAT T-T TAT GTAT T-T TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
9268044 ATATATGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 4 0.11
3 27 0.73
4 6 0.16
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9268049 original size:8 final size:7
Alignment explanation
Indices: 9268014--9268133 Score: 51
Period size: 6 Copynumber: 17.1 Consensus size: 7
9268004 TTATGTATTT
9268014 TATTAT-
1 TATTATA
9268020 TATTAT-
1 TATTATA
9268026 TATTAT-
1 TATTATA
9268032 TATTATA
1 TATTATA
9268039 TATTAATA
1 TATT-ATA
9268047 TATGTATA
1 TAT-TATA
*
9268055 TCTT-TA
1 TATTATA
*
9268061 T-TTATT
1 TATTATA
*
9268067 TATTTATT
1 TA-TTATA
9268075 TATTCAT-
1 TATT-ATA
*
9268082 TGTTA-A
1 TATTATA
9268088 TATT-TA
1 TATTATA
*
9268094 TATGTATTT
1 TAT-TA-TA
9268103 TATTTATA
1 TA-TTATA
9268111 TAGTTATA
1 TA-TTATA
9268119 TATT-TA
1 TATTATA
9268125 TTATTATA
1 -TATTATA
9268133 T
1 T
9268134 TATAATTTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 29
0.72 0.05 0.23
Matches are distributed among these distances:
5 2 0.02
6 33 0.36
7 18 0.20
8 32 0.35
9 6 0.07
10 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (7 bp):
TATTATA
Found at i:9268066 original size:4 final size:4
Alignment explanation
Indices: 9268057--9268148 Score: 53
Period size: 4 Copynumber: 21.5 Consensus size: 4
9268047 TATGTATATC
* *
9268057 TTTA TTTA TTTA TTTA TTTA TTCA TTGT- TAATA TTTA TATGTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA T-T-TA -TTTA
* * *
9268105 TTTA TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TT
9268149 ATTCTTTTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
3 3 0.04
4 48 0.70
5 11 0.16
6 6 0.09
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:9268134 original size:8 final size:8
Alignment explanation
Indices: 9268013--9268151 Score: 52
Period size: 8 Copynumber: 17.6 Consensus size: 8
9268003 TTTATGTATT
9268013 TTATTATTA
1 TTATTA-TA
9268022 TTATTATTA
1 TTATTA-TA
9268031 TTATTATA
1 TTATTATA
9268039 -TATTA-A
1 TTATTATA
9268045 TATATGTATA
1 T-TAT-TATA
9268055 TCT-TTAT-
1 T-TATTATA
9268062 TTATT-TA
1 TTATTATA
9268069 TTTATT-TA
1 -TTATTATA
*
9268077 TTCATTGTTA
1 TT-ATT-ATA
*
9268087 ATATT-TA
1 TTATTATA
*
9268094 -TATGTATT
1 TTAT-TATA
9268102 TTATT-TA
1 TTATTATA
9268109 TATAGTTATA
1 T-TA-TTATA
9268119 -TATT-TA
1 TTATTATA
9268125 TTATTATA
1 TTATTATA
*
9268133 TTATAAT-
1 TTATTATA
9268140 TTATT-TA
1 TTATTATA
9268147 TTATT
1 TTATT
9268152 CTTTTTTTCT
Statistics
Matches: 105, Mismatches: 6, Indels: 40
0.70 0.04 0.26
Matches are distributed among these distances:
6 9 0.09
7 30 0.29
8 32 0.30
9 26 0.25
10 8 0.08
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (8 bp):
TTATTATA
Found at i:9269146 original size:4 final size:4
Alignment explanation
Indices: 9269135--9269187 Score: 58
Period size: 4 Copynumber: 13.8 Consensus size: 4
9269125 TTTTTTGAAA
* *
9269135 ATTT -TTT ATTT ATTT GTTT ATTT GTTTT ATTT ATTT A-TT ATTT A-TT
1 ATTT ATTT ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT
9269181 ATTT ATT
1 ATTT ATT
9269188 AGATTAGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
3 9 0.22
4 29 0.71
5 3 0.07
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:9269278 original size:22 final size:22
Alignment explanation
Indices: 9269253--9269294 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
9269243 TTTTTTATTT
9269253 TTTTATCTTT-ATTTATTTTCAC
1 TTTTAT-TTTGATTTATTTTCAC
*
9269275 TTTTATTTTGTTTTATTTTC
1 TTTTATTTTGATTTATTTTC
9269295 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTGATTTATTTTCAC
Found at i:9269390 original size:59 final size:59
Alignment explanation
Indices: 9269298--9269894 Score: 594
Period size: 59 Copynumber: 9.9 Consensus size: 59
9269288 TATTTTCTTT
*
9269298 AAATAAAA-ATCAAAAAAATA--TTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAAATTTCAAAAAAA-AGGTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGA
*
9269355 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAAGTTGAAAGTATCAATTTTTCTT
1 AAATAAAATTTCAAAAAAAAGGTTTTT---G---AG--GAAAAGTTGAAAGTATCAATTTTCCTT
*
9269420 AA
58 GA
* * * *
9269422 AAATCAAAATATCCAAAAAATA--TTTTT-AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 AAAT-AAAAT-TTCAAAAAAAAGGTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT--GA
* * *
9269483 AAATAAAATTTCAAAAAAGAGGTTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAA
1 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-A
* *
9269543 AAATAAAATTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* * * *
9269602 AAATCAAAATTTCCAAAAAATA--TTCTT-AGGAAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAAT-AAAATTT-CAAAAAAAAGGTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGA
* * *
9269661 AAATAAAATTTC--AAAAAAGGTTTTTTTTGAGGAAAAATTAAAAATATCAATTTTCCTTGA
1 AAATAAAATTTCAAAAAAAAGG---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
9269721 AAATCAAAGTTTTCAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TGAA
1 AAAT-AAA-ATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-A
**
9269780 AAATAAAATTTCAAAAAAGGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* ** *
9269839 AAATCAAAGTTTCCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAT-AAAATTT-C-AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
9269895 TCCTACACAA
Statistics
Matches: 460, Mismatches: 39, Indels: 77
0.80 0.07 0.13
Matches are distributed among these distances:
55 5 0.01
57 20 0.04
58 25 0.05
59 153 0.33
60 107 0.23
61 50 0.11
62 44 0.10
64 5 0.01
66 1 0.00
67 35 0.08
68 6 0.01
69 9 0.02
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (59 bp):
AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
Found at i:9269689 original size:119 final size:118
Alignment explanation
Indices: 9269318--9269896 Score: 674
Period size: 119 Copynumber: 4.8 Consensus size: 118
9269308 CAAAAAAATA
* *
9269318 TTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTT-CAAAAAAAAGGTTT
1 TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATA--TTT
*
9269380 TTGAGGAAAAGTTGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAATATCCAAAAAA--T
63 TT---G---AG--GAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAAT-TTCAAAAAAGGT
*
9269443 A
118 G
* *
9269444 TTTTT-AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAAAT-AAAATTT-CAAAAAAGAGGT
1 TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT--AAAAATCAAAATTTCCAAAAAATA--T
*
9269506 TTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAAAAATAAAATTTCAAAAAAAGG-G
61 TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAAAATAAAATTTC-AAAAAAGGTG
*
9269565 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATTCTT-
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATTTTTG
*
9269629 AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAGGTTT
66 AGG-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAGG-TG
* * * * * *
9269684 TTTTTGAGGAAAAATTAAAAATATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAATATTTTTG
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATTTTTG
* * *
9269749 AGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAATAAAATTTCAAAAAAGGGG
66 AGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAGGTG
* *
9269802 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAATATTT
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCC---AAAAAATATTT
*
9269867 TTGGGGAAAAGTTGAAAGTATCAATTTTTC
63 TTGAGGAAAAGTTGAAAGTATCAATTTTTC
9269897 CTACACAAGA
Statistics
Matches: 408, Mismatches: 28, Indels: 39
0.86 0.06 0.08
Matches are distributed among these distances:
117 8 0.02
118 64 0.16
119 140 0.34
120 47 0.12
121 83 0.20
122 5 0.01
125 1 0.00
126 33 0.08
128 27 0.07
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.34
Consensus pattern (118 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATTTTTG
AGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAGGTG
Found at i:9271680 original size:20 final size:21
Alignment explanation
Indices: 9271642--9271681 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
9271632 TTTATATTAT
* *
9271642 TTTAATATATATTTTGATATC
1 TTTAATATAGATTTAGATATC
9271663 TTTAA-ATAGATTTAGATAT
1 TTTAATATAGATTTAGATAT
9271682 AAATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTAATATAGATTTAGATATC
Found at i:9281039 original size:125 final size:122
Alignment explanation
Indices: 9280778--9281044 Score: 295
Period size: 125 Copynumber: 2.2 Consensus size: 122
9280768 ATTATTTGGG
*
9280778 ATTATTAAAGGCATCTTTTATACAAAATACCTTTAATATTACACTACTAAAATTTTAAAAGGTTA
1 ATTATTAAAGGCATCTTATATACAAAATACCTTTAATATTACACTACTAAAATTTTAAAAGGTTA
* * ** * * *
9280843 TTAAAGGCGTTTATTCTAAAAAAATGCCTTGACTAATTCGTTTTATTTTTTGAAAAA
66 GTAAAGGCGCTTATTCTAAAAAAACACCTTCACTAATTCGTTTTAATTTATGAAAAA
* * * *
9280900 ATTTATTAAAGGCATCTTATAGTGCAAAATACTTTTAATATTTCACTACTCAAATTTTAAGATA-
1 A-TTATTAAAGGCATCTTATA-TACAAAATACCTTTAATATTACACTACTAAAATTTTAA-A-AG
* * * * *
9280964 GTTAGTGAATGCGCTTATTCTAGAAAAACACCTTCACTAATTC-TCTTTAATTTATGTACATA
62 GTTAGTAAAGGCGCTTATTCTAAAAAAACACCTTCACTAATTCGT-TTTAATTTATG-AAAAA
* *
9281026 ATTATTGAAGGCATTTTAT
1 ATTATTAAAGGCATCTTAT
9281045 GAGAACAAAC
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
122 1 0.01
123 18 0.15
124 35 0.29
125 61 0.51
126 5 0.04
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (122 bp):
ATTATTAAAGGCATCTTATATACAAAATACCTTTAATATTACACTACTAAAATTTTAAAAGGTTA
GTAAAGGCGCTTATTCTAAAAAAACACCTTCACTAATTCGTTTTAATTTATGAAAAA
Found at i:9281372 original size:186 final size:185
Alignment explanation
Indices: 9280944--9281381 Score: 533
Period size: 185 Copynumber: 2.4 Consensus size: 185
9280934 TTAATATTTC
* * *
9280944 ACTACTCAAATTTTAAGATAGTTAGTGAATGCGCTTATTCTAGAAAAACACCTTCACTAATTCTC
1 ACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTTTATTCTAGAAAAACACCTTCAATAATTCTC
* * *
9281009 TTTAATTTATGTACATAATTATTGAAGGCATTTTATGAGAACAAACACTTTCAATAATTTTCTTT
66 TTTAATTTATATACATAATTATTGAAGGCATTTTATGAGAACAAACACCTTCAATAATTTTCATT
* ** * *
9281074 TAAAATTTTTACGATTGTTAAAGGTATTTCTAGTGAAAAATGCCTTCAATATTTA
131 TAAAATTTTTAAGATCATTAAAGGTATTTCTAGTGAAAAACGCCTTCAATATCTA
* * * * *
9281129 ACTACTTAAATTTTAAGACAGTTAGTGAAGGCGTTTATTCCAGAAAAACATCTTCAATGATTC-C
1 ACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTTTATTCTAGAAAAACACCTTCAATAATTCTC
* * * * **
9281193 ATTTAATTTATATACATAATTATTGAAGGTATTTTTTTAGAACAGATGCCTTCAATAA-TTTCAT
66 -TTTAATTTATATACATAATTATTGAAGGCATTTTATGAGAACAAACACCTTCAATAATTTTCAT
* *
9281257 TTAAAATTTTTTAAGATCATTAAGGGTATCTTTTAGTGAAAAACGCCTTCAATATACT-
130 TTAAAA-TTTTTAAGATCATTAAAGGTAT-TTCTAGTGAAAAACGCCTTCAATAT-CTA
* * * * * * *
9281315 AGTACTCAAATTTTAAGATGGATAGTTAAGGCATTTATTTTAGAAAAATACCTTCAATAATT-TC
1 ACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTTTATTCTAGAAAAACACCTTCAATAATTCTC
9281379 TTT
66 TTT
9281382 TAAAAAAATT
Statistics
Matches: 212, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
184 12 0.06
185 125 0.59
186 74 0.35
187 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (185 bp):
ACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTTTATTCTAGAAAAACACCTTCAATAATTCTC
TTTAATTTATATACATAATTATTGAAGGCATTTTATGAGAACAAACACCTTCAATAATTTTCATT
TAAAATTTTTAAGATCATTAAAGGTATTTCTAGTGAAAAACGCCTTCAATATCTA
Found at i:9281376 original size:124 final size:124
Alignment explanation
Indices: 9281216--9281514 Score: 345
Period size: 125 Copynumber: 2.4 Consensus size: 124
9281206 ACATAATTAT
* *
9281216 TGAAGGTATTT-TTTTAGAACAGATGCCTTCAATAATTTCATTTAAAATTTTTTAAGATCATTAA
1 TGAAGGTATTTATTTTAGAACAAATACCTTCAATAATTTC-TTTAAAATTTTTTAAGATCATTAA
* * * * *
9281280 GGGTATCTTTTAGTGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAAGATGGATAG
65 AGGCATCTTCTAGTGAAAAACACCTTCAATATACCAGTACTCAAATTTTAAGATGGATAG
* * ** * *
9281340 TTAAGGCATTTATTTTAGAA-AAATACCTTCAATAATTTCTTTTAAAAAAATTTTGAGATTATTA
1 TGAAGGTATTTATTTTAGAACAAATACCTTCAATAATTTC-TTT-AAAATTTTTTAAGATCATTA
* * * *
9281404 AAGGCGTCTTCTAGTGAAAAATACCTTCAATATACCAGTACTCAAATTTTAATATGGTTAG
64 AAGGCATCTTCTAGTGAAAAACACCTTCAATATACCAGTACTCAAATTTTAAGATGGATAG
* * * *
9281465 TGAATGTGTTTATTCTA-AAGAAATACCTTCAATATATTT-TTTAAAATTTT
1 TGAAGGTATTTATTTTAGAACAAATACCTTCAATA-ATTTCTTTAAAATTTT
9281515 GTACATAATT
Statistics
Matches: 146, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
123 6 0.04
124 34 0.23
125 102 0.70
126 4 0.03
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (124 bp):
TGAAGGTATTTATTTTAGAACAAATACCTTCAATAATTTCTTTAAAATTTTTTAAGATCATTAAA
GGCATCTTCTAGTGAAAAACACCTTCAATATACCAGTACTCAAATTTTAAGATGGATAG
Found at i:9281433 original size:311 final size:311
Alignment explanation
Indices: 9281046--9281697 Score: 726
Period size: 311 Copynumber: 2.1 Consensus size: 311
9281036 GCATTTTATG
* * * *
9281046 AGAACAAACACTTTCAATAATTTTCTTTT--AAAATTTTTACGATTGTTAAAGGTATTTCTAGTG
1 AGAA-AAACACCTTCAATAA-TTTCTTTTAAAAAATTTTGACGATTATTAAAGGCATTTCTAGTG
* ** *
9281109 AAAAATGCCTTCAATATTTAACTACTTAAATTTTAAGACAGTTAGTGAAGGCGTTTATTCCAGAA
64 AAAAATACCTTCAATATACAACTACTCAAATTTTAAGACAGTTAGTGAAGGCGTTTATTCCA-AA
* * *
9281174 -AAACATCTTCAATGAT-TCCATTT-AATTTATATACATAATTATTGAAGGTATTTTTTTAGAAC
128 GAAACACCTTCAAT-ATAT-CATTTAAATTT-TATACATAATTATTGAAGGCATTTTTTGAGAAC
* ** *
9281236 AGATGCCTTCAATAA-TTTCATTT-AAAATTTTTTAAGATCATTAAGGGTATCTTTTAGTGAAAA
190 AAATGCCTTCAATAATTTTCATTTAAAAAAATTTTAAGATCATTAAAGGTATCTTTTAGTGAAAA
* * * * * * **
9281299 ACGCCTTCAATATACTAGTACTCAAATTTTAAGATGGATAGTTAAGGCATTTATTTT
255 ACACCTTCAATATACCACTACTCAAATTTTAAAATAGATAGTGAAGGCATTTATTCC
* *
9281356 AGAAAAATACCTTCAATAATTTCTTTTAAAAAAATTTTGA-GATTATTAAAGGCGTCTTCTAGTG
1 AGAAAAACACCTTCAATAATTTCTTTT-AAAAAATTTTGACGATTATTAAAGGCAT-TTCTAGTG
* * * ** * * *
9281420 AAAAATACCTTCAATATACCAGTACTCAAATTTTAATATGGTTAGTGAATGTGTTTATTCTAAAG
64 AAAAATACCTTCAATATACAACTACTCAAATTTTAAGACAGTTAGTGAAGGCGTTTATTCCAAAG
* ** *
9281485 AAATACCTTCAATATATTTTTTAAAATTTTGTACATAATTATTGAAGGCATTTTTTGAGAACAAA
129 AAACACCTTCAATATATCATTT-AAATTTTATACATAATTATTGAAGGCATTTTTTGAGAACAAA
* * * * *
9281550 TGCCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAAAGGTGTTTTTTAGTGAAAAACA
193 TGCCTTCAATAATTTTCATTTAAAAAAATTTTAAGATCATTAAAGGTATCTTTTAGTGAAAAACA
* * * *
9281615 CCTTCAATATTCCACTACTCAATTTTTAAAATAGTTAGTGAAGGCGTTTATTCC
258 CCTTCAATATACCACTACTCAAATTTTAAAATAGATAGTGAAGGCATTTATTCC
* * *
9281669 AGAAAAACGCCTTCACTAATTTGTTTTAA
1 AGAAAAACACCTTCAATAATTTCTTTTAA
9281698 TTTTTGTACA
Statistics
Matches: 282, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
308 8 0.03
309 13 0.05
310 23 0.08
311 123 0.44
312 14 0.05
313 101 0.36
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (311 bp):
AGAAAAACACCTTCAATAATTTCTTTTAAAAAATTTTGACGATTATTAAAGGCATTTCTAGTGAA
AAATACCTTCAATATACAACTACTCAAATTTTAAGACAGTTAGTGAAGGCGTTTATTCCAAAGAA
ACACCTTCAATATATCATTTAAATTTTATACATAATTATTGAAGGCATTTTTTGAGAACAAATGC
CTTCAATAATTTTCATTTAAAAAAATTTTAAGATCATTAAAGGTATCTTTTAGTGAAAAACACCT
TCAATATACCACTACTCAAATTTTAAAATAGATAGTGAAGGCATTTATTCC
Found at i:9281556 original size:125 final size:123
Alignment explanation
Indices: 9281241--9281560 Score: 299
Period size: 125 Copynumber: 2.6 Consensus size: 123
9281231 AGAACAGATG
* * * * * * * * *
9281241 CCTTCAATAATTTCATTTAAAATTTTTTAAGATCATTAAGGGTATCTTTTAGTGAAAAACGCCTT
1 CCTTCAATAATTTCTTTTAAAAATTTTGAA-ATTATTAAAGGCATCTTCTAGAGAAAAATGCCTT
* * *
9281306 CAATATACTAGTACTCAAATTTTAAGATGGATAGTTAAGGCATTTATTTTAGAAAAATA
65 CAATATACCAGTACTCAAATTTTAAGATGGATAGTGAAGGCATTTATTCTAGAAAAATA
* * * *
9281365 CCTTCAATAATTTCTTTTAAAAAAATTTTGAGATTATTAAAGGCGTCTTCTAGTGAAAAATACCT
1 CCTTCAATAATTTCTTTT--AAAAATTTTGAAATTATTAAAGGCATCTTCTAGAGAAAAATGCCT
* * * **
9281430 TCAATATACCAGTACTCAAATTTTAATATGGTTAGTGAATGTGTTTATTCTA-AAGAAATA
64 TCAATATACCAGTACTCAAATTTTAAGATGGATAGTGAAGGCATTTATTCTAGAA-AAATA
* * *
9281490 CCTTCAAT-ATATT-TTTT-AAAATTTTGTACATAATTATTGAAGGCAT-TTTTTGAGAACAAAT
1 CCTTCAATAAT-TTCTTTTAAAAATTTTG---A-AATTATTAAAGGCATCTTCTAGAGAA-AAAT
9281551 GCCTTCAATA
60 GCCTTCAATA
9281561 ATTTTCTTTT
Statistics
Matches: 161, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
121 9 0.06
124 33 0.20
125 110 0.68
126 9 0.06
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (123 bp):
CCTTCAATAATTTCTTTTAAAAATTTTGAAATTATTAAAGGCATCTTCTAGAGAAAAATGCCTTC
AATATACCAGTACTCAAATTTTAAGATGGATAGTGAAGGCATTTATTCTAGAAAAATA
Found at i:9281580 original size:188 final size:187
Alignment explanation
Indices: 9281342--9281810 Score: 608
Period size: 188 Copynumber: 2.5 Consensus size: 187
9281332 ATGGATAGTT
*
9281342 AAGGCATTTATTTTAGAA-AAATACCTTCAATAA-TTTCTTTTAAAAAAATTTTGAGATTATTAA
1 AAGGCATTT-TTTGAGAACAAAT-CCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAA
* * * * * *
9281405 AGGCGTCTTCTAGTGAAAAATACCTTCAATATACCAGTACTCAAATTTTAATATGGTTAGTGAAT
64 AGGCGTCTTTTAGTGAAAAACACCTTCAATATACCACTACTCAAATTTTAAAATAGTTAGTGAAG
* * *
9281470 GTGTTTATTCTA-AAGAAATACCTTCAATATATTT-TTTAAAATTTTGTACATAATTATTG
129 GCGTTTATTCCAGAA-AAACACCTTCAATA-ATTTGTTTAAAATTTTGTACATAATTATTG
9281529 AAGGCATTTTTTGAGAACAAATGCCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAAA
1 AAGGCATTTTTTGAGAACAAAT-CCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAAA
* * * *
9281594 GGTGTTTTTTAGTGAAAAACACCTTCAATATTCCACTACTCAATTTTTAAAATAGTTAGTGAAGG
65 GGCGTCTTTTAGTGAAAAACACCTTCAATATACCACTACTCAAATTTTAAAATAGTTAGTGAAGG
* * * *
9281659 CGTTTATTCCAGAAAAACGCCTTCACTAATTTGTTTTAATTTTTGTACATAATTATTG
130 CGTTTATTCCAGAAAAACACCTTCAATAATTTGTTTAAAATTTTGTACATAATTATTG
* * * * *
9281717 AAGGTATTTTTTGAGAACAAACTCCTTTAATAATTTT-TTTTAAAAAATTTTTGGGATTAGTAAA
1 AAGGCATTTTTTGAGAACAAA-TCCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAAA
* *
9281781 TGCGTCTTTTAGT-ATAAAACGCCTTCAATA
65 GGCGTCTTTTAGTGA-AAAACACCTTCAATA
9281811 ATGTTAAGGA
Statistics
Matches: 248, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
186 8 0.03
187 75 0.30
188 162 0.65
189 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.41
Consensus pattern (187 bp):
AAGGCATTTTTTGAGAACAAATCCTTCAATAATTTTCTTTTAAAAAAATTTTGAGATTATTAAAG
GCGTCTTTTAGTGAAAAACACCTTCAATATACCACTACTCAAATTTTAAAATAGTTAGTGAAGGC
GTTTATTCCAGAAAAACACCTTCAATAATTTGTTTAAAATTTTGTACATAATTATTG
Found at i:9286508 original size:302 final size:300
Alignment explanation
Indices: 9285926--9286832 Score: 988
Period size: 302 Copynumber: 3.0 Consensus size: 300
9285916 ATGAAAGTGT
* * * *
9285926 TTTTAGCGAGAAAATACCTTGAATCATCCCTAACAAAATGTTATTAAAGGCATTTTTAACCAAAA
1 TTTTAGCAAGAAAATACCTTGAATAATCTCTAACAAAATGTTATTGAAGGCATTTTTAACCAAAA
* * * * *
9285991 CAACCTTTAATAATCCCACCTAAAATATATTA-TGTGGAATAATAAAGGCATTTT-GGAATAAAA
66 CCACCTTTAATAATCCAACCTAAAA-AT-TTATTGTGGAATATTAAAGGCGTTTTAGGCA-AAAA
** * * * *
9286054 ATGCCTTCAATAATCCATTCCAAATATTGTGTATGGATTATTGAAGGCATTTTTGACAAAAGTTG
128 ACACCTTCAAGAATCCATTCCAACTTTTGTGTATGGATTATTGAAGGCA-TTTTGACAAAAATTG
* *** * *
9286119 CCTTCAATAATTTCTGTTAAAAATTTATTGATTGGATTATTGAAAGTGCTTTCA-CCTAAAAACG
192 CCTTCAATAA-TCCAACTAAAAATTTATTGATTGGATTATTGAAGGCGCTTTCAGCC-AAAAACG
* * * *
9286183 CCTTCAAAAATCCATTTCATATTTTTCCTATGGATTATTAAGGACA
255 CCTTCAAAAATCCGTTCCATATTTTTTCTATAGATTATTAAGGACA
* * * *
9286229 TATTTAGCAAGAAAATGCCTTGAATAATCTCTAATAAAATGTTATTGAAGGCATTTTTTACCAGA
1 T-TTTAGCAAGAAAATACCTTGAATAATCTCTAACAAAATGTTATTGAAGGCATTTTTAACCAAA
* * *
9286294 ACCGCCTTTAATAATCCTACCTAAAAATTTATTGTGAGAAATATTAAAGGTGTTTTAGGCAAAAA
65 ACCACCTTTAATAATCCAACCTAAAAATTTATTGTG-G-AATATTAAAGGCGTTTTAGGCAAAAA
* * * * * * ***
9286359 ACAACTTCAAGAACCCATACTAACTTTTTTGTATGGATTATTGAAGGCA-TTT-AAAAAAATCAT
128 ACACCTTCAAGAATCCATTCCAACTTTTGTGTATGGATTATTGAAGGCATTTTGACAAAAATTGC
* *
9286422 CTTCAATAATACCAACTAAAAATTAATTGAATGGATTATTGAAGGCGCTTTCAGCCAAAAACGCC
193 CTTCAATAAT-CCAACTAAAAATTTATTGATTGGATTATTGAAGGCGCTTTCAGCCAAAAACGCC
* * *
9286487 TTCAATAATCCGTTCCATATTTTTTGTATAGATTATTAAGGGCA
257 TTCAAAAATCCGTTCCATATTTTTTCTATAGATTATTAAGGACA
* * * *
9286531 TTTT-TCTACCGAAAACACCTTGAATAATCTATAACAAAATGTTATTGAAGGCATTTTTGAA--A
1 TTTTAGC-A-AGAAAATACCTTGAATAATCTCTAACAAAATGTTATTGAAGGCATTTTT-AACCA
* * ** *
9286593 AAATCACCTTCAATAATCCAACCATTCAAATTTATCGTGTGGAATATTAAAGGCGTTTTAAGC-A
63 AAACCACCTTTAATAATCCAACC-TAAAAATTTAT--TGTGGAATATTAAAGGCGTTTTAGGCAA
* *
9286657 AAAACAGCCTTCAAGAATTCGTTCCAACTTTTGTGTATGGATTATTGAAGGCATTTTTGACAAAA
125 AAAACA-CCTTCAAGAATCCATTCCAACTTTTGTGTATGGATTATTGAAGGCA-TTTTGACAAAA
* **
9286722 ATTGCCTTTAATAATCCAAACTAAAAATTTATTGATTGGATTATTGAAGGCGAGTTC-GACCAAA
188 ATTGCCTTCAATAATCC-AACTAAAAATTTATTGATTGGATTATTGAAGGCGCTTTCAG-CCAAA
* * * *
9286786 AATGCCTTCAAGAATCGGTTCAATATTTTTTCTATAGATTATTAAGG
251 AACGCCTTCAAAAATCCGTTCCATATTTTTTCTATAGATTATTAAGG
9286833 GTGTTTCTCT
Statistics
Matches: 503, Mismatches: 82, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
300 1 0.00
301 31 0.06
302 210 0.42
303 14 0.03
304 89 0.18
305 155 0.31
306 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.34
Consensus pattern (300 bp):
TTTTAGCAAGAAAATACCTTGAATAATCTCTAACAAAATGTTATTGAAGGCATTTTTAACCAAAA
CCACCTTTAATAATCCAACCTAAAAATTTATTGTGGAATATTAAAGGCGTTTTAGGCAAAAAACA
CCTTCAAGAATCCATTCCAACTTTTGTGTATGGATTATTGAAGGCATTTTGACAAAAATTGCCTT
CAATAATCCAACTAAAAATTTATTGATTGGATTATTGAAGGCGCTTTCAGCCAAAAACGCCTTCA
AAAATCCGTTCCATATTTTTTCTATAGATTATTAAGGACA
Found at i:9286737 original size:178 final size:176
Alignment explanation
Indices: 9286396--9286722 Score: 387
Period size: 179 Copynumber: 1.9 Consensus size: 176
9286386 TTTGTATGGA
* * *
9286396 TTATTGAAGGCATTTAAAAAAATCATCTTCAATAATACCAACTAAAAATTAATTGAATGGATTAT
1 TTATTGAAGGCATTTAAAAAAATCACCTTCAATAATACCAACTAAAAATTAATCGAATGGAATAT
* * * *
9286461 TGAAGGCGCTTTCAGCCAAAAACGCCTTCAATAATCCGTTCCATATTTTTTGTATAGATTATTAA
66 TAAAGGCGCTTTAAGCCAAAAACGCCTTCAAGAATCCGTTCCATATTTTGTGTATAGATTATTAA
* *
9286526 GGGCATTTTTCTACCGAAAACACCTTGAATAATCTATAACAAAATG
131 GGGCATTTTTCGACCAAAAACACCTTGAATAATCTATAACAAAATG
* ** * **
9286572 TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAAT-CCAACCATTCAAATTTATCGTGTGGA
1 TTATTGAAGGCA--TTTAAAAAAATCACCTTCAATAATACCAA-C-TAAAAATTAATCGAATGGA
* * *
9286636 ATATTAAAGGCGTTTTAAG-CAAAAACAGCCTTCAAGAATTCGTTCCA-ACTTTTGTGTATGGAT
62 ATATTAAAGGCGCTTTAAGCCAAAAAC-GCCTTCAAGAATCCGTTCCATA-TTTTGTGTATAGAT
9286699 TATTGAA-GGCATTTTT-GA-CAAAAA
125 TATT-AAGGGCATTTTTCGACCAAAAA
9286723 TTGCCTTTAA
Statistics
Matches: 126, Mismatches: 18, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
176 12 0.10
177 9 0.07
178 32 0.25
179 71 0.56
180 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.33
Consensus pattern (176 bp):
TTATTGAAGGCATTTAAAAAAATCACCTTCAATAATACCAACTAAAAATTAATCGAATGGAATAT
TAAAGGCGCTTTAAGCCAAAAACGCCTTCAAGAATCCGTTCCATATTTTGTGTATAGATTATTAA
GGGCATTTTTCGACCAAAAACACCTTGAATAATCTATAACAAAATG
Found at i:9286797 original size:126 final size:126
Alignment explanation
Indices: 9286572--9286800 Score: 284
Period size: 126 Copynumber: 1.8 Consensus size: 126
9286562 TAACAAAATG
* **
9286572 TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAACCATTCAAATTTATCGTGTGGAA
1 TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAAACATAAAAATTTATCGTGTGGAA
* * *
9286637 TATTAAAGGCGTTTTAAGCAAAAACAGCCTTCAAGAATTCGTTCCAACTTTTGTGTATGGA
66 TATTAAAGGCGGTTCAACCAAAAACAGCCTTCAAGAATTCGTTCCAACTTTTGTGTATGGA
** * *
9286698 TTATTGAAGGCATTTTTGACAAAAATTGCCTTTAATAATCCAAAC-TAAAAATTTATTGAT-TGG
1 TTATTGAAGGCATTTTTGA-AAAAATCACCTTCAATAATCCAAACATAAAAATTTATCG-TGTGG
* * * *
9286761 ATTATTGAAGGCGAGTTCGACCAAAAA-TGCCTTCAAGAAT
64 AATATTAAAGGCG-GTTCAACCAAAAACAGCCTTCAAGAAT
9286801 CGGTTCAATA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
126 55 0.64
127 31 0.36
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (126 bp):
TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAAACATAAAAATTTATCGTGTGGAA
TATTAAAGGCGGTTCAACCAAAAACAGCCTTCAAGAATTCGTTCCAACTTTTGTGTATGGA
Found at i:9286826 original size:126 final size:126
Alignment explanation
Indices: 9286572--9286832 Score: 273
Period size: 126 Copynumber: 2.1 Consensus size: 126
9286562 TAACAAAATG
* **
9286572 TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAACCATTCAAATTTATCGTGTGGAA
1 TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAAACATAAAAATTTATCGTGTGGAA
* * * * * *
9286637 TATTAAAGGCGTTTTAAGCAAAAACAGCCTTCAAGAATTCGTTCCAACTTTTGTGTATGGA
66 TATTAAAGGCGGTTCAACCAAAAACAGCCTTCAAGAATTCGTTCCAAATTTTGTCTATAGA
** * *
9286698 TTATTGAAGGCATTTTTGACAAAAATTGCCTTTAATAATCCAAAC-TAAAAATTTATTGAT-TGG
1 TTATTGAAGGCATTTTTGA-AAAAATCACCTTCAATAATCCAAACATAAAAATTTATCG-TGTGG
* * * * *
9286761 ATTATTGAAGGCGAGTTCGACCAAAAA-TGCCTTCAAGAA-TCGGTT-CAATATTTTTTCTATAG
64 AATATTAAAGGCG-GTTCAACCAAAAACAGCCTTCAAGAATTC-GTTCCAA-ATTTTGTCTATAG
9286823 A
126 A
9286824 TTATT-AAGG
1 TTATTGAAGG
9286833 GTGTTTCTCT
Statistics
Matches: 112, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
125 9 0.08
126 72 0.64
127 31 0.28
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (126 bp):
TTATTGAAGGCATTTTTGAAAAAATCACCTTCAATAATCCAAACATAAAAATTTATCGTGTGGAA
TATTAAAGGCGGTTCAACCAAAAACAGCCTTCAAGAATTCGTTCCAAATTTTGTCTATAGA
Found at i:9288019 original size:12 final size:12
Alignment explanation
Indices: 9288002--9288026 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9287992 TAAAAATAAT
9288002 ATAAATATTAAA
1 ATAAATATTAAA
9288014 ATAAATATTAAA
1 ATAAATATTAAA
9288026 A
1 A
9288027 ATTCATCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAAATATTAAA
Found at i:9289768 original size:23 final size:24
Alignment explanation
Indices: 9289735--9289782 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
9289725 TGAAAACTTA
9289735 AAAAGATTTTTTTGTTATTTTTTG
1 AAAAGATTTTTTTGTTATTTTTTG
*
9289759 AAAAGATTTTTTT-TTGTTTTTTG
1 AAAAGATTTTTTTGTTATTTTTTG
9289782 A
1 A
9289783 CTTATTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (24 bp):
AAAAGATTTTTTTGTTATTTTTTG
Found at i:9289803 original size:14 final size:14
Alignment explanation
Indices: 9289784--9289813 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
9289774 GTTTTTTGAC
9289784 TTATTTGAAAATTT
1 TTATTTGAAAATTT
9289798 TTATTTGAAAATTT
1 TTATTTGAAAATTT
9289812 TT
1 TT
9289814 TTAAAACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (14 bp):
TTATTTGAAAATTT
Found at i:9289913 original size:19 final size:19
Alignment explanation
Indices: 9289891--9289932 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9289881 AATGAGCTAA
*
9289891 AAAAATAAAATCAAAAAAT
1 AAAAATAAAATCAAAAAAG
*
9289910 AAAAATAAAATGAAAAAAG
1 AAAAATAAAATCAAAAAAG
9289929 AAAA
1 AAAA
9289933 CCTTGCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAATAAAATCAAAAAAG
Found at i:9290765 original size:3 final size:3
Alignment explanation
Indices: 9290757--9290852 Score: 58
Period size: 3 Copynumber: 32.0 Consensus size: 3
9290747 CAAGAATAGA
* * *
9290757 AAT AAT AAT AAT AAT AAAT AAAT AAAT AAAT AAT TAT ACT ACT ATAT
1 AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT AAT AAT AAT A-AT
* * *
9290804 AAT -AT ACT AAT AAT AAT AAT ACT -AC AAT -AT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9290848 -AT AAT
1 AAT AAT
9290853 GAAACATGGT
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
2 8 0.11
3 51 0.67
4 17 0.22
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:9290777 original size:16 final size:16
Alignment explanation
Indices: 9290756--9290852 Score: 57
Period size: 16 Copynumber: 6.4 Consensus size: 16
9290746 ACAAGAATAG
9290756 AAATAATAATAATAAT
1 AAATAATAATAATAAT
9290772 AAAT-A-AAT-A-AAT
1 AAATAATAATAATAAT
* * *
9290784 AAATAATTATACTACT
1 AAATAATAATAATAAT
* *
9290800 ATATAAT-ATACTAAT
1 AAATAATAATAATAAT
*
9290815 -AATAATAATACTACA-
1 AAATAATAATAATA-AT
*
9290830 ATATAATAATAAT-AT
1 AAATAATAATAATAAT
9290845 AATATAAT
1 AA-ATAAT
9290853 GAAACATGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
12 7 0.11
13 2 0.03
14 11 0.17
15 15 0.24
16 28 0.44
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:9290826 original size:30 final size:28
Alignment explanation
Indices: 9290758--9290848 Score: 85
Period size: 30 Copynumber: 3.5 Consensus size: 28
9290748 AAGAATAGAA
9290758 ATAATAATAATAATAA-A-TA-AATA-A
1 ATAATAATAATAATAATACTACAATATA
*
9290782 AT-A-AATAAT--T-ATACTACTATATA
1 ATAATAATAATAATAATACTACAATATA
9290805 ATATACTAATAATAATAATACTACAATATA
1 ATA-A-TAATAATAATAATACTACAATATA
9290835 ATAATAAT-ATAATA
1 ATAATAATAATAATA
9290849 TAATGAAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 19
0.72 0.03 0.25
Matches are distributed among these distances:
19 1 0.02
20 2 0.04
21 2 0.04
22 9 0.17
23 4 0.07
24 2 0.04
25 1 0.02
27 12 0.22
28 4 0.07
29 2 0.04
30 15 0.28
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATAATAATAATAATACTACAATATA
Found at i:9291169 original size:39 final size:40
Alignment explanation
Indices: 9291080--9291190 Score: 124
Period size: 39 Copynumber: 2.9 Consensus size: 40
9291070 TCGAAAGTAA
* *
9291080 ATGATCGGGGTGAAATCACGAGTCATAAGAAATGATCTAG
1 ATGATCGAGATGAAATCACGAGTCATAAGAAATGATCTAG
* * *
9291120 -TGA-CTAAGATGAAACCACGAGTCATAAGAAATGAT-TGG
1 ATGATC-GAGATGAAATCACGAGTCATAAGAAATGATCTAG
*
9291158 ATGATCGAGATGAAATCATGAGTCA-AA-AAATGA
1 ATGATCGAGATGAAATCACGAGTCATAAGAAATGA
9291191 AATGACCAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
37 6 0.10
38 5 0.08
39 48 0.80
40 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (40 bp):
ATGATCGAGATGAAATCACGAGTCATAAGAAATGATCTAG
Found at i:9291816 original size:76 final size:74
Alignment explanation
Indices: 9291689--9291829 Score: 185
Period size: 76 Copynumber: 1.9 Consensus size: 74
9291679 AGATGCAAGC
* * *
9291689 TTTGCAAGGATTTTCAGATTTGCAAGATAGAAAATTTTACAAGATTTCAAGTTTTGCAAAGGTTC
1 TTTGCAAGGATTTTCAGATTTGCAAGAAAGAAAATTTTA-AAGACTCCAAGTTTTG-AAAGGTTC
9291754 TAGATACAATA
64 TAGATACAATA
* * *
9291765 TTTGCAGGGATTTTTAGGTTTGCAAGAAAGAAAGATTTGT-AAGACTCCAAGTTTTGAAAGGTTC
1 TTTGCAAGGATTTTCAGATTTGCAAGAAAGAAA-ATTT-TAAAGACTCCAAGTTTTGAAAGGTTC
9291829 T
64 T
9291830 GAATTTGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
75 9 0.16
76 43 0.75
77 4 0.07
78 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (74 bp):
TTTGCAAGGATTTTCAGATTTGCAAGAAAGAAAATTTTAAAGACTCCAAGTTTTGAAAGGTTCTA
GATACAATA
Found at i:9292027 original size:76 final size:75
Alignment explanation
Indices: 9291900--9292041 Score: 187
Period size: 76 Copynumber: 1.9 Consensus size: 75
9291890 AAGACTCCAA
*** * * *
9291900 ATTCACAAGATTTTAGGTTCGCAAGAACATTCAGATTCACAAGATTTCAAGTTTCGTAAAGGTTC
1 ATTCACAAGATTTTAGGTTCGCAAGAACAGAAAGATTCACAAGACTCCAAGTTTCATAAAGGTTC
9291965 TGTATACAAG
66 TGTATACAAG
* *
9291975 ATTCACAAAGATTTTTAGGTTTGCAAGAA-AGAAAGATTCATAAGACTCCAAGTTTCATAAAGGT
1 ATTCAC-AAGA-TTTTAGGTTCGCAAGAACAGAAAGATTCACAAGACTCCAAGTTTCATAAAGGT
9292039 TCT
64 TCT
9292042 AGATTTGCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
75 6 0.11
76 35 0.61
77 16 0.28
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (75 bp):
ATTCACAAGATTTTAGGTTCGCAAGAACAGAAAGATTCACAAGACTCCAAGTTTCATAAAGGTTC
TGTATACAAG
Found at i:9292131 original size:68 final size:69
Alignment explanation
Indices: 9292011--9292156 Score: 206
Period size: 68 Copynumber: 2.1 Consensus size: 69
9292001 GAAAGAAAGA
* * * *
9292011 TTCATAAGACTCCAAGTTTCATAAAGGTTCTAGATTTGCAAAGATGCAAGATTCAC-AAGAATTT
1 TTCACAAGACTCCAAGTTTCACAAAGGTTCTAAATTCGCAAAGATGCAAGATTCACAAAG-ATTT
9292075 TTAAG
65 TTAAG
* *
9292080 TTCACAAGACTTCAAGTTTCGCAAAGGTTC-AAATTCGCAAAGATGCAAGATTCACAAAGATTTT
1 TTCACAAGACTCCAAGTTTCACAAAGGTTCTAAATTCGCAAAGATGCAAGATTCACAAAGATTTT
*
9292144 TAGG
66 TAAG
9292148 TTCACAAGA
1 TTCACAAGA
9292157 AAGAAAGATT
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
68 40 0.58
69 29 0.42
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (69 bp):
TTCACAAGACTCCAAGTTTCACAAAGGTTCTAAATTCGCAAAGATGCAAGATTCACAAAGATTTT
TAAG
Found at i:9292137 original size:17 final size:17
Alignment explanation
Indices: 9292112--9292218 Score: 56
Period size: 17 Copynumber: 6.2 Consensus size: 17
9292102 AAAGGTTCAA
*
9292112 ATTCGCAAAGATGCAAG
1 ATTCACAAAGATGCAAG
***
9292129 ATTCACAAAGATTTTTAG
1 ATTCACAAAGA-TGCAAG
* * *
9292147 GTTCAC-AAGAAAGAAAG
1 ATTCACAAAG-ATGCAAG
*
9292164 ATTCACAAA-ACTCCAAG
1 ATTCACAAAGA-TGCAAG
* * * * *
9292181 TTTCGCAAAGTTTCTAG
1 ATTCACAAAGATGCAAG
9292198 ATTCACAAAGATGCAAG
1 ATTCACAAAGATGCAAG
9292215 ATTC
1 ATTC
9292219 GCAAGGATTT
Statistics
Matches: 62, Mismatches: 23, Indels: 10
0.65 0.24 0.11
Matches are distributed among these distances:
16 1 0.02
17 50 0.81
18 11 0.18
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (17 bp):
ATTCACAAAGATGCAAG
Found at i:9292152 original size:86 final size:86
Alignment explanation
Indices: 9292080--9292262 Score: 260
Period size: 86 Copynumber: 2.1 Consensus size: 86
9292070 AATTTTTAAG
* * *
9292080 TTCACAAGACTTCAAGTTTCGCAAAGGTTC-AAATTCGCAAAGATGCAAGATTCACAAAGATTTT
1 TTCACAAAACTCCAAGTTTCGCAAAGGTTCTAAATTCACAAAGATGCAAGATTCACAAAGATTTT
*
9292144 TAGGTTCACAAGAAAGAAAGA
66 TAAGTTCACAAGAAAGAAAGA
* * * *
9292165 TTCACAAAACTCCAAGTTTCGCAAAGTTTCTAGATTCACAAAGATGCAAGATTCGCAAGGATTTT
1 TTCACAAAACTCCAAGTTTCGCAAAGGTTCTAAATTCACAAAGATGCAAGATTCACAAAGATTTT
*
9292230 TAAGTTCGCAAGAAAGAAAGA
66 TAAGTTCACAAGAAAGAAAGA
* *
9292251 TTCCCAAGACTC
1 TTCACAAAACTC
9292263 TAAATTCACA
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 27 0.31
86 59 0.69
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (86 bp):
TTCACAAAACTCCAAGTTTCGCAAAGGTTCTAAATTCACAAAGATGCAAGATTCACAAAGATTTT
TAAGTTCACAAGAAAGAAAGA
Found at i:9292268 original size:154 final size:154
Alignment explanation
Indices: 9291971--9292269 Score: 402
Period size: 154 Copynumber: 1.9 Consensus size: 154
9291961 GTTCTGTATA
** * * *
9291971 CAAGATTCACAAAGATTTTTAGGTTTGCAAGAAAGAAAGATTCATAAGACTCCAAGTTTCATAAA
1 CAAGATTCACAAAGATTTTTAGGTTCACAAGAAAGAAAGATTCACAAAACTCCAAGTTTCACAAA
** **** *
9292036 GGTTCTAGATTTGCAAAGATGCAAGATTCACAAGAATTTTTAAGTTCACAAGACTTCAAGTTTCG
66 GGTTCTAGATTCACAAAGATGCAAGATTCACAAGAATTTTTAAGTTCACAAGAAAGAAAGATTCG
**
9292101 CAAAGGTTCAAATTCGCAAAGATG
131 CAAAGACTCAAATTCGCAAAGATG
*
9292125 CAAGATTCACAAAGATTTTTAGGTTCACAAGAAAGAAAGATTCACAAAACTCCAAGTTTCGCAAA
1 CAAGATTCACAAAGATTTTTAGGTTCACAAGAAAGAAAGATTCACAAAACTCCAAGTTTCACAAA
* * * *
9292190 GTTTCTAGATTCACAAAGATGCAAGATTCGCAAGGATTTTTAAGTTCGCAAGAAAGAAAGATTC-
66 GGTTCTAGATTCACAAAGATGCAAGATTCACAAGAATTTTTAAGTTCACAAGAAAGAAAGATTCG
*
9292254 CCAAGACTCTAAATTC
131 CAAAGACTC-AAATTC
9292270 ACAAGAATGG
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
153 6 0.05
154 118 0.95
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (154 bp):
CAAGATTCACAAAGATTTTTAGGTTCACAAGAAAGAAAGATTCACAAAACTCCAAGTTTCACAAA
GGTTCTAGATTCACAAAGATGCAAGATTCACAAGAATTTTTAAGTTCACAAGAAAGAAAGATTCG
CAAAGACTCAAATTCGCAAAGATG
Found at i:9293136 original size:53 final size:51
Alignment explanation
Indices: 9293079--9293234 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 51
9293069 GTTCAAATTA
* * *
9293079 AAAATATTTTCTTGTTTTAAATTTCTAAATTCTCCATCATTTTGGCCTATTTG
1 AAAATATTTTCTT-TTTTAAATTTCTAAATT-TTCACCATTTAGGCCTATTTG
* *
9293132 -AAA-A--TTCTTTTTT--ATTTCTAAAATTTTCACCATTTAGGTCAATTTG
1 AAAATATTTTCTTTTTTAAATTTCT-AAATTTTCACCATTTAGGCCTATTTG
* *
9293178 AAAATATTTTCTTTTTCGAAA-TTCTTAAATTTTTCACCATTTGGGCCTATTTAG
1 AAAATATTTTCTTTTT-TAAATTTC-TAAA-TTTTCACCATTTAGGCCTATTT-G
9293232 AAA
1 AAA
9293235 TTCTTTTTTA
Statistics
Matches: 83, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
46 22 0.27
47 8 0.10
48 5 0.06
49 5 0.06
50 8 0.10
51 1 0.01
52 9 0.11
53 21 0.25
54 4 0.05
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (51 bp):
AAAATATTTTCTTTTTTAAATTTCTAAATTTTCACCATTTAGGCCTATTTG
Found at i:9293225 original size:99 final size:99
Alignment explanation
Indices: 9293060--9293249 Score: 251
Period size: 99 Copynumber: 1.9 Consensus size: 99
9293050 CTAATTATTC
* * * * *
9293060 CACCATTTTGTTCAAATTAAAAATATTTTCTTGTTTTAAATTTCTAAATTCTCCATCATTTTGGC
1 CACCATTTAGGTCAAATTAAAAATATTTTCTTGTTTGAAATTTCTAAATTCTCCACCATTTGGGC
9293125 CTATTT-GAAAATTCTTTTTTATTTCTAAAATTTT
66 CTATTTAG-AAATTCTTTTTTATTTCTAAAATTTT
* * * *
9293159 CACCATTTAGGTCAATTTGAAAATATTTTCTT-TTTCGAAA-TTCTTAAATTTTTCACCATTTGG
1 CACCATTTAGGTCAAATTAAAAATATTTTCTTGTTT-GAAATTTC-TAAATTCTCCACCATTTGG
9293222 GCCTATTTAGAAATTCTTTTTTATTTCT
64 GCCTATTTAGAAATTCTTTTTTATTTCT
9293250 TTTTTTTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
98 6 0.08
99 72 0.91
100 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.51
Consensus pattern (99 bp):
CACCATTTAGGTCAAATTAAAAATATTTTCTTGTTTGAAATTTCTAAATTCTCCACCATTTGGGC
CTATTTAGAAATTCTTTTTTATTTCTAAAATTTT
Found at i:9293445 original size:14 final size:14
Alignment explanation
Indices: 9293428--9293454 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9293418 TTCAACCCAA
9293428 ATTTTTATTTTTTT
1 ATTTTTATTTTTTT
9293442 ATTTTTATTTTTT
1 ATTTTTATTTTTT
9293455 GGATTGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
ATTTTTATTTTTTT
Found at i:9294003 original size:12 final size:12
Alignment explanation
Indices: 9293986--9294010 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9293976 CCTCTCTAAC
9293986 CCGATTGAATAT
1 CCGATTGAATAT
9293998 CCGATTGAATAT
1 CCGATTGAATAT
9294010 C
1 C
9294011 AACCAAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CCGATTGAATAT
Found at i:9299408 original size:30 final size:29
Alignment explanation
Indices: 9299363--9299432 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 29
9299353 TGAAAACATA
9299363 AAAAGATTTTTTTTG-TTGTTATTATTTTG
1 AAAAGATTTTTTTTGTTTGTTATTA-TTTG
*
9299392 AAAAGATTTGTTTTTGTTTTTTATTATTTG
1 AAAAGATTT-TTTTTGTTTGTTATTATTTG
9299422 AAAAG-TTTTTT
1 AAAAGATTTTTT
9299433 ATAATTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
28 3 0.08
29 12 0.32
30 15 0.39
31 8 0.21
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (29 bp):
AAAAGATTTTTTTTGTTTGTTATTATTTG
Found at i:9300386 original size:3 final size:3
Alignment explanation
Indices: 9300372--9300471 Score: 57
Period size: 3 Copynumber: 33.0 Consensus size: 3
9300362 TAAAAACAAG
* *
9300372 AAT AAA AAT AAT AAT AAT AAAT AAAT AAAT AAAT AAAT AAT TAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT -AAT AAT AAT AAT
* * * *
9300419 ACT ATAT AAT -AT ACT AAT AAT AAT ACT -AT AAT -AT AGT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9300462 -AT AAT -AT AAT
1 AAT AAT AAT AAT
9300472 GAAACATGGT
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
2 9 0.12
3 48 0.62
4 21 0.27
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:9300396 original size:4 final size:4
Alignment explanation
Indices: 9300387--9300411 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
9300377 AAATAATAAT
9300387 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
9300412 TTATAATACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:9300424 original size:8 final size:8
Alignment explanation
Indices: 9300382--9300467 Score: 65
Period size: 8 Copynumber: 10.8 Consensus size: 8
9300372 AATAAAAATA
9300382 ATAATAAT
1 ATAATAAT
9300390 A-AATAA-
1 ATAATAAT
9300396 ATAAATAA-
1 AT-AATAAT
9300404 ATAAATAATT
1 AT-AATAA-T
*
9300414 ATAATACT
1 ATAATAAT
9300422 AT-ATAAT
1 ATAATAAT
*
9300429 ATACTAAT
1 ATAATAAT
*
9300437 AATAATACT
1 -ATAATAAT
9300446 ATAAT-AT
1 ATAATAAT
9300453 AGTAATAAT
1 A-TAATAAT
9300462 ATAATA
1 ATAATA
9300468 TAATGAAACA
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
6 1 0.02
7 13 0.20
8 35 0.55
9 13 0.20
10 2 0.03
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (8 bp):
ATAATAAT
Found at i:9300437 original size:27 final size:24
Alignment explanation
Indices: 9300407--9300467 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 24
9300397 TAAATAAATA
9300407 AATAATTATAATACTATATAATATACT
1 AATAA-TATAATAC--TATAATATACT
*
9300434 AAT-A-ATAATACTATAATATAGT
1 AATAATATAATACTATAATATACT
9300456 AATAATATAATA
1 AATAATATAATA
9300468 TAATGAAACA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 13 0.42
23 1 0.03
24 13 0.42
26 1 0.03
27 3 0.10
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (24 bp):
AATAATATAATACTATAATATACT
Found at i:9300440 original size:11 final size:11
Alignment explanation
Indices: 9300417--9300464 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
9300407 AATAATTATA
9300417 ATACTATATAAT
1 ATACTA-ATAAT
9300429 ATACTAATAAT
1 ATACTAATAAT
9300440 AATACT-ATAAT
1 -ATACTAATAAT
*
9300451 ATAGTAATAAT
1 ATACTAATAAT
9300462 ATA
1 ATA
9300465 ATATAATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
10 4 0.12
11 18 0.55
12 11 0.33
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (11 bp):
ATACTAATAAT
Found at i:9301119 original size:19 final size:21
Alignment explanation
Indices: 9301061--9301122 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
9301051 TTTTGTAAGG
9301061 ATTTTTGTTTGAAA--A-ATTT
1 ATTTTT-TTTGAAAGTATATTT
9301080 -TTTTTTTTGAAAGTATATTT
1 ATTTTTTTTGAAAGTATATTT
*
9301100 ATTTTTTTTGGAAG-AT-TTT
1 ATTTTTTTTGAAAGTATATTT
9301119 ATTT
1 ATTT
9301123 GAAAAGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
17 7 0.18
18 5 0.13
19 8 0.21
20 6 0.16
21 12 0.32
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (21 bp):
ATTTTTTTTGAAAGTATATTT
Found at i:9301136 original size:18 final size:19
Alignment explanation
Indices: 9301115--9301153 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9301105 TTTTGGAAGA
9301115 TTTT-ATTTGAAAAGATTT
1 TTTTCATTTGAAAAGATTT
* *
9301133 TTTTCTTTTGAAAGGATTT
1 TTTTCATTTGAAAAGATTT
9301152 TT
1 TT
9301154 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.59
Consensus pattern (19 bp):
TTTTCATTTGAAAAGATTT
Found at i:9301159 original size:18 final size:19
Alignment explanation
Indices: 9301120--9301159 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
9301110 GAAGATTTTA
*
9301120 TTTGAAAAGATTTTTTTCT
1 TTTGAAAAGATTTTTCTCT
*
9301139 TTTGAAAGGATTTTTCT-T
1 TTTGAAAAGATTTTTCTCT
9301157 TTT
1 TTT
9301160 CTTTTTTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (19 bp):
TTTGAAAAGATTTTTCTCT
Found at i:9301356 original size:24 final size:23
Alignment explanation
Indices: 9301303--9301356 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
9301293 ATAATAGGTT
* *
9301303 AAAAATAAATAAAATCAAATCAA
1 AAAAAAAAATAAAATAAAATCAA
* * *
9301326 ATCAAAAAATTAAAATAAAATGAA
1 A-AAAAAAAATAAAATAAAATCAA
9301350 AAAAAAA
1 AAAAAAA
9301357 CCTGCGATCG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (23 bp):
AAAAAAAAATAAAATAAAATCAA
Found at i:9302093 original size:3 final size:3
Alignment explanation
Indices: 9302085--9302160 Score: 75
Period size: 3 Copynumber: 26.0 Consensus size: 3
9302075 AAGGAAAATA
* * *
9302085 AAT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT -AT ATT AAT CAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
9302131 AGT AAT AAT AAT AAT AGT AAC ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9302161 GGTACCATAT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
2 4 0.07
3 54 0.93
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:9302130 original size:11 final size:11
Alignment explanation
Indices: 9302087--9302140 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
9302077 GGAAAATAAA
*
9302087 TAATAATATTAA
1 TAATAATA-TAG
*
9302099 TAATAATAATAA
1 TAATAAT-ATAG
*
9302111 TAATAATATAT
1 TAATAATATAG
*
9302122 TAATCATATAG
1 TAATAATATAG
9302133 TAATAATA
1 TAATAATA
9302141 ATAATAGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 19 0.51
12 17 0.46
13 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (11 bp):
TAATAATATAG
Found at i:9305418 original size:21 final size:21
Alignment explanation
Indices: 9305394--9305448 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
9305384 AGGAACAAGT
* *
9305394 ATAAAAAAATATTTTTGTAAC
1 ATAAAAAAATATTTTGGCAAC
*
9305415 AT-AAATAATACTTTTGGCAAC
1 ATAAAAAAATA-TTTTGGCAAC
*
9305436 ATAAAAAATTATT
1 ATAAAAAAATATT
9305449 ATTACAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 7 0.26
21 14 0.52
22 6 0.22
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.36
Consensus pattern (21 bp):
ATAAAAAAATATTTTGGCAAC
Found at i:9311841 original size:11 final size:11
Alignment explanation
Indices: 9311819--9311869 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
9311809 TTAAAACTCA
*
9311819 TTCATTTATTG
1 TTCATTTGTTG
*
9311830 TTAATTTGTTG
1 TTCATTTGTTG
9311841 TTCATTTGTTG
1 TTCATTTGTTG
* *
9311852 TTCATTTGCTA
1 TTCATTTGTTG
9311863 TTCATTT
1 TTCATTT
9311870 ATAATAATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.16, C:0.10, G:0.12, T:0.63
Consensus pattern (11 bp):
TTCATTTGTTG
Found at i:9315228 original size:19 final size:22
Alignment explanation
Indices: 9315199--9315243 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 22
9315189 CATAAAGCAT
*
9315199 TTTTATTTAAGTCAA-AAGA-A
1 TTTTATTTAAGTAAAGAAGAGA
9315219 TTTT-TTTAAGTAAAGAAGAGA
1 TTTTATTTAAGTAAAGAAGAGA
9315240 TTTT
1 TTTT
9315244 CCAATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 8 0.36
21 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (22 bp):
TTTTATTTAAGTAAAGAAGAGA
Found at i:9316077 original size:25 final size:25
Alignment explanation
Indices: 9316049--9316097 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9316039 TAGGGTTTGG
9316049 GTTTGATTTGAGG-TTTAAGATTTAT
1 GTTTGATTT-AGGATTTAAGATTTAT
*
9316074 GTTTGATTTAGGATTTATGATTTA
1 GTTTGATTTAGGATTTAAGATTTA
9316098 GATTTAGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.53
Consensus pattern (25 bp):
GTTTGATTTAGGATTTAAGATTTAT
Found at i:9316103 original size:6 final size:7
Alignment explanation
Indices: 9316078--9316130 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
9316068 ATTTATGTTT
9316078 GATTTAG
1 GATTTAG
*
9316085 GATTTAT
1 GATTTAG
9316092 GATTTA-
1 GATTTAG
9316098 GATTTAG
1 GATTTAG
*
9316105 GGTTTAG
1 GATTTAG
*
9316112 GGTTTA-
1 GATTTAG
9316118 GATTTAG
1 GATTTAG
*
9316125 GGTTTA
1 GATTTA
9316131 AGGTGATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
6 11 0.28
7 29 0.73
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (7 bp):
GATTTAG
Found at i:9316103 original size:20 final size:20
Alignment explanation
Indices: 9316052--9316130 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
9316042 GGTTTGGGTT
* *
9316052 TGATTTGAGGTTTAAGATTTA
1 TGATTT-AGATTTAGGATTTA
9316073 TG-TTT-GATTTAGGATTTA
1 TGATTTAGATTTAGGATTTA
*
9316091 TGATTTAGATTTAGGGTTTA
1 TGATTTAGATTTAGGATTTA
* * *
9316111 GGGTTTAGATTTAGGGTTTA
1 TGATTTAGATTTAGGATTTA
9316131 AGGTGATTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.25
19 3 0.06
20 33 0.65
21 2 0.04
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (20 bp):
TGATTTAGATTTAGGATTTA
Found at i:9316110 original size:13 final size:13
Alignment explanation
Indices: 9316074--9316284 Score: 57
Period size: 13 Copynumber: 16.3 Consensus size: 13
9316064 TAAGATTTAT
9316074 GTTT-GATTTAGG
1 GTTTAGATTTAGG
*
9316086 ATTTATGATTTA-G
1 GTTTA-GATTTAGG
* *
9316099 ATTTAGGGTTTAGG
1 GTTTA-GATTTAGG
9316113 GTTTAGATTTAGG
1 GTTTAGATTTAGG
9316126 GTTTAAGGTGATTTAGG
1 GTTT-A---GATTTAGG
* * *
9316143 G-TTAGGGTGTAAG
1 GTTTA-GATTTAGG
*
9316156 G--T-GGTTTAGG
1 GTTTAGATTTAGG
9316166 G-TTAGGA-TTAGG
1 GTTTA-GATTTAGG
* *
9316178 GTTTAGGTTTAAG
1 GTTTAGATTTAGG
*
9316191 GTTTAGAGTTAGG
1 GTTTAGATTTAGG
*
9316204 GTTTACAATTTA-G
1 GTTTA-GATTTAGG
* **
9316217 GTTTAGGGTTTAAA
1 GTTTA-GATTTAGG
* *
9316231 GTATAGGTTTAGG
1 GTTTAGATTTAGG
* * *
9316244 GTTAAG-GTTACG
1 GTTTAGATTTAGG
* * *
9316256 GTTAAGGTTTGGG
1 GTTTAGATTTAGG
9316269 GTTTAG-TTTAGG
1 GTTTAGATTTAGG
9316281 GTTT
1 GTTT
9316285 CATGGATGGC
Statistics
Matches: 149, Mismatches: 35, Indels: 30
0.70 0.16 0.14
Matches are distributed among these distances:
10 7 0.05
11 1 0.01
12 30 0.20
13 79 0.53
14 20 0.13
15 1 0.01
16 2 0.01
17 9 0.06
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (13 bp):
GTTTAGATTTAGG
Found at i:9316147 original size:23 final size:23
Alignment explanation
Indices: 9316121--9316171 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
9316111 GGGTTTAGAT
*
9316121 TTAGGGTTTAAGGTGATTTAGGG
1 TTAGGGTGTAAGGTGATTTAGGG
*
9316144 TTAGGGTGTAAGGTGGTTTAGGG
1 TTAGGGTGTAAGGTGATTTAGGG
9316167 TTAGG
1 TTAGG
9316172 ATTAGGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (23 bp):
TTAGGGTGTAAGGTGATTTAGGG
Found at i:9316168 original size:7 final size:7
Alignment explanation
Indices: 9316100--9316284 Score: 90
Period size: 7 Copynumber: 27.4 Consensus size: 7
9316090 ATGATTTAGA
9316100 TTTAGGG
1 TTTAGGG
9316107 TTTAGGG
1 TTTAGGG
*
9316114 TTTA-GA
1 TTTAGGG
9316120 TTTAGGG
1 TTTAGGG
9316127 TTTAAGGTG
1 TTT-AGG-G
9316136 ATTTAGGG
1 -TTTAGGG
9316144 -TTAGGG
1 TTTAGGG
*
9316150 TGTAAGGTGG
1 T-TTA-G-GG
9316160 TTTAGGG
1 TTTAGGG
9316167 -TTA-GG
1 TTTAGGG
*
9316172 ATTAGGG
1 TTTAGGG
9316179 TTTA-GG
1 TTTAGGG
*
9316185 TTTAAGG
1 TTTAGGG
*
9316192 TTTAGAG
1 TTTAGGG
9316199 -TTAGGG
1 TTTAGGG
***
9316205 TTTACAA
1 TTTAGGG
9316212 TTTA-GG
1 TTTAGGG
9316218 TTTAGGG
1 TTTAGGG
**
9316225 TTTAAAG
1 TTTAGGG
*
9316232 TATA-GG
1 TTTAGGG
9316238 TTTAGGG
1 TTTAGGG
*
9316245 -TTAAGG
1 TTTAGGG
*
9316251 -TTACGG
1 TTTAGGG
*
9316257 -TTAAGG
1 TTTAGGG
*
9316263 TTTGGGG
1 TTTAGGG
9316270 TTTA--G
1 TTTAGGG
9316275 TTTAGGG
1 TTTAGGG
9316282 TTT
1 TTT
9316285 CATGGATGGC
Statistics
Matches: 137, Mismatches: 24, Indels: 34
0.70 0.12 0.17
Matches are distributed among these distances:
5 7 0.05
6 51 0.37
7 59 0.43
8 7 0.05
9 7 0.05
10 6 0.04
ACGTcount: A:0.22, C:0.01, G:0.36, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:9316206 original size:20 final size:20
Alignment explanation
Indices: 9316080--9316284 Score: 128
Period size: 20 Copynumber: 10.5 Consensus size: 20
9316070 TTATGTTTGA
* * * *
9316080 TTTAGGATTTATGATTTAGA
1 TTTAGGGTTTAAGGTTTAGG
* *
9316100 TTTAGGGTTTAGGGTTTAGA
1 TTTAGGGTTTAAGGTTTAGG
9316120 TTTAGGGTTTAAGGTGATTTAGG
1 TTTAGGGTTTAA-G-G-TTTAGG
* *
9316143 GTTAGGGTGTAAGG--T-GG
1 TTTAGGGTTTAAGGTTTAGG
*
9316160 TTTAGGG-TT-AGGATTAGGG
1 TTTAGGGTTTAAGGTTTA-GG
9316179 TTTA-GGTTTAAGGTTTAGAG
1 TTTAGGGTTTAAGGTTTAG-G
*
9316199 -TTAGGGTTTACA-ATTTAGG
1 TTTAGGGTTTA-AGGTTTAGG
* *
9316218 TTTAGGGTTTAAAGTATAGG
1 TTTAGGGTTTAAGGTTTAGG
9316238 TTTAGGG-TTAAGG-TTACGG
1 TTTAGGGTTTAAGGTTTA-GG
* **
9316257 -TTAAGGTTTGGGGTTTA-G
1 TTTAGGGTTTAAGGTTTAGG
9316275 TTTAGGGTTT
1 TTTAGGGTTT
9316285 CATGGATGGC
Statistics
Matches: 148, Mismatches: 19, Indels: 37
0.73 0.09 0.18
Matches are distributed among these distances:
15 3 0.02
16 1 0.01
17 9 0.06
18 11 0.07
19 33 0.22
20 71 0.48
21 3 0.02
22 2 0.01
23 15 0.10
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.42
Consensus pattern (20 bp):
TTTAGGGTTTAAGGTTTAGG
Found at i:9316221 original size:33 final size:33
Alignment explanation
Indices: 9316179--9316241 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
9316169 AGGATTAGGG
*
9316179 TTTAGGTTTAAGGTTTAGAGT-TAGGGTTTACAA
1 TTTAGGTTTAAGGTTTAAAGTATA-GGTTTACAA
*
9316212 TTTAGGTTTAGGGTTTAAAGTATAGGTTTA
1 TTTAGGTTTAAGGTTTAAAGTATAGGTTTA
9316242 GGGTTAAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 25 0.93
34 2 0.07
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (33 bp):
TTTAGGTTTAAGGTTTAAAGTATAGGTTTACAA
Done.