Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 41 of 160
Found at i:9456030 original size:114 final size:114
Alignment explanation
Indices: 9455886--9456361 Score: 452
Period size: 114 Copynumber: 4.1 Consensus size: 114
9455876 TCGAGATCGT
* * * * *
9455886 AAATAAATGA-CTGGACTAATATCACGAGTCTGAAGATGATCTGACCTAAGTCAAGATCAAATGA
1 AAATAAATGATC-GAACTAATGTCACAAGTCTGAAAATGATCTGACCTAAGTCGAGATCAAATGA
* * * * *
9455950 CTGGGATGATGCCATGAGTCAAAAAGTAACCAAGGCTGAGTCAAGATCAA
65 CTGGGATGATGCCACGAGTCAAAAAGTGACCAAGACTAAGTCAAGGTCAA
* * * * *
9456000 AAATAAATGATTGAACTGATGTCACAAGTCTGAAAACGATCTGACCTAAGTCTAGATCAAATAAC
1 AAATAAATGATCGAACTAATGTCACAAGTCTGAAAATGATCTGACCTAAGTCGAGATCAAATGAC
** * * *
9456065 TGGGATGATGTTACGAGTCGAAAGGTGATCAAGACTAAGTCAAGGTCAA
66 TGGGATGATGCCACGAGTCAAAAAGTGACCAAGACTAAGTCAAGGTCAA
* * * *
9456114 AAATAAATAATCAAACTAATGTCACAAGTCTGAAAATGATCTAACCTGAGTCGAGATCAAATGAC
1 AAATAAATGATCGAACTAATGTCACAAGTCTGAAAATGATCTGACCTAAGTCGAGATCAAATGAC
* * * * * *
9456179 TAGAAAGATACCACGAGTCAAAATAAAATGACCAAGACTAAGTCAAGGCCAA
66 TGGGATGATGCCACGAGTC--AA-AAAGTGACCAAGACTAAGTCAAGGTCAA
* * *** * * *
9456231 AAATAAATTATCGAACTGATGTCGTGAGTTTGAAGATGATTTGACCTAAGTCGAGATCAAATGAC
1 AAATAAATGATCGAACTAATGTCACAAGTCTGAAAATGATCTGACCTAAGTCGAGATCAAATGAC
* ** * * *
9456296 TGAGACAATACCACGAGTCAAAATAAAGTGACCAAGA-TCGAGTCGAGGTCCAA
66 TGGGATGATGCCACGAGTC--AA-AAAGTGACCAAGACT-AAGTCAAGGT-CAA
*
9456349 AAATAAATAATCG
1 AAATAAATGATCG
9456362 GGATAAAACC
Statistics
Matches: 296, Mismatches: 60, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
114 163 0.55
116 2 0.01
117 116 0.39
118 15 0.05
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (114 bp):
AAATAAATGATCGAACTAATGTCACAAGTCTGAAAATGATCTGACCTAAGTCGAGATCAAATGAC
TGGGATGATGCCACGAGTCAAAAAGTGACCAAGACTAAGTCAAGGTCAA
Found at i:9456060 original size:60 final size:59
Alignment explanation
Indices: 9455988--9456174 Score: 154
Period size: 60 Copynumber: 3.2 Consensus size: 59
9455978 ACCAAGGCTG
*
9455988 AGTCAAGATCAAAAATAAATGATTGAACTGATGTCACAAGTCTGAAAACGATCTGACCTA
1 AGTCAAGATCAAAAATAAATGA-TGAACTGATGTCACAAGTCTGAAAATGATCTGACCTA
* * * * * * *
9456048 AGTCTAGATC--AAATAACTG--GGA-TGATGTTACGAGTC-GAAAGGTGATCAAGA-CTA
1 AGTCAAGATCAAAAATAAATGATGAACTGATGTCACAAGTCTGAAA-ATGATC-TGACCTA
* * * * * *
9456102 AGTCAAGGTCAAAAATAAATAATCAAACTAATGTCACAAGTCTGAAAATGATCTAACCTG
1 AGTCAAGATCAAAAATAAATGAT-GAACTGATGTCACAAGTCTGAAAATGATCTGACCTA
*
9456162 AGTCGAGATCAAA
1 AGTCAAGATCAAA
9456175 TGACTAGAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
53 4 0.04
54 27 0.29
55 4 0.04
56 7 0.07
58 8 0.09
59 2 0.02
60 38 0.40
61 4 0.04
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.23
Consensus pattern (59 bp):
AGTCAAGATCAAAAATAAATGATGAACTGATGTCACAAGTCTGAAAATGATCTGACCTA
Found at i:9456314 original size:231 final size:228
Alignment explanation
Indices: 9455900--9456314 Score: 497
Period size: 231 Copynumber: 1.8 Consensus size: 228
9455890 AAATGACTGG
* * * * * * * *
9455900 ACTAATATCACGAGTCTGAAGATGATCTGACCTAAGTCAAGATCAAATGACTGGGATGATGCCAT
1 ACTAATATCACAAGTCTGAAAATGATCTAACCTAAGTCAAGATCAAATGACTAGAAAGATACCAC
* * * * *
9455965 GAGTCAAAAAGTAACCAAGGCTGAGTCAAGATCAAAAATAAATGATTGAACTGATGTCACAAGTC
66 GAGTCAAAAAATAACCAAGACTAAGTCAAGACCAAAAATAAATGATCGAACTGATGTCACAAGTC
* * ** ***
9456030 TGAAAACGATCTGACCTAAGTCTAGATCAAATAACTGGGATGATGTTACGAGTCGAAAGGTGATC
131 TGAAAACGATCTGACCTAAGTCGAGATCAAATAACTGAGACAATACCACGAGTCGAAAGGTGATC
9456095 AAGACTAAGTCAAGGTCAAAAATAAATAATCAA
196 AAGACTAAGTCAAGGTCAAAAATAAATAATCAA
* * *
9456128 ACTAATGTCACAAGTCTGAAAATGATCTAACCTGAGTCGAGATCAAATGACTAGAAAGATACCAC
1 ACTAATATCACAAGTCTGAAAATGATCTAACCTAAGTCAAGATCAAATGACTAGAAAGATACCAC
* * * ***
9456193 GAGTCAAAATAAAATGACCAAGACTAAGTCAAGGCCAAAAATAAATTATCGAACTGATGTCGTGA
66 GAGTC--AA-AAAATAACCAAGACTAAGTCAAGACCAAAAATAAATGATCGAACTGATGTCACAA
* * * * *
9456258 GTTTGAAGATGATTTGACCTAAGTCGAGATCAAATGACTGAGACAATACCACGAGTC
128 GTCTGAAAACGATCTGACCTAAGTCGAGATCAAATAACTGAGACAATACCACGAGTC
9456315 AAAATAAAGT
Statistics
Matches: 150, Mismatches: 34, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
228 59 0.39
230 2 0.01
231 89 0.59
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (228 bp):
ACTAATATCACAAGTCTGAAAATGATCTAACCTAAGTCAAGATCAAATGACTAGAAAGATACCAC
GAGTCAAAAAATAACCAAGACTAAGTCAAGACCAAAAATAAATGATCGAACTGATGTCACAAGTC
TGAAAACGATCTGACCTAAGTCGAGATCAAATAACTGAGACAATACCACGAGTCGAAAGGTGATC
AAGACTAAGTCAAGGTCAAAAATAAATAATCAA
Found at i:9456597 original size:41 final size:41
Alignment explanation
Indices: 9456550--9456702 Score: 157
Period size: 41 Copynumber: 3.7 Consensus size: 41
9456540 AACCTGAATA
* *
9456550 CACATCTTTGGCAAAGAAACTATTCTTCATCAACCTGGAGG
1 CACATCTTTGGCAAAAAAACTATTCTTCATCAACTTGGAGG
** * *
9456591 TGCATCTTTGGCAAAAAAACCA-TCTTCTAT-AAGTTTGGAGG
1 CACATCTTTGGCAAAAAAACTATTCTTC-ATCAA-CTTGGAGG
* * * * *
9456632 CACATTTTTGGTAAAAAAACTATTTTTCATCAGCTTAGAGG
1 CACATCTTTGGCAAAAAAACTATTCTTCATCAACTTGGAGG
* *
9456673 CACATCTTTGGCAAAGAAACTATTTTTCAT
1 CACATCTTTGGCAAAAAAACTATTCTTCAT
9456703 TAGCCTGAAT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
40 7 0.08
41 78 0.87
42 5 0.06
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (41 bp):
CACATCTTTGGCAAAAAAACTATTCTTCATCAACTTGGAGG
Found at i:9467599 original size:21 final size:22
Alignment explanation
Indices: 9467570--9467628 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
9467560 TTAAAGGATA
*
9467570 AAAATTATTTTTGTTTAT-TTG
1 AAAACTATTTTTGTTTATATTG
*
9467591 AAAACTATTTTT-TTTTTATTG
1 AAAACTATTTTTGTTTATATTG
*
9467612 AAAGGACTTTTTTTGTT
1 AAA--ACTATTTTTGTT
9467629 ATTATTCCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.13
21 17 0.55
23 8 0.26
24 2 0.06
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.59
Consensus pattern (22 bp):
AAAACTATTTTTGTTTATATTG
Found at i:9467602 original size:22 final size:21
Alignment explanation
Indices: 9467577--9467628 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
9467567 ATAAAAATTA
9467577 TTTTTGTTTATTTGAAA-ACTAT
1 TTTTTGTTTA-TTGAAAGACT-T
*
9467599 TTTTTTTTTATTGAAAGGACTT
1 TTTTTGTTTATTGAAA-GACTT
9467621 TTTTTGTT
1 TTTTTGTT
9467629 ATTATTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 6 0.23
22 17 0.65
23 3 0.12
ACGTcount: A:0.21, C:0.04, G:0.12, T:0.63
Consensus pattern (21 bp):
TTTTTGTTTATTGAAAGACTT
Found at i:9467798 original size:7 final size:6
Alignment explanation
Indices: 9467757--9467797 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
9467747 AAAATATAGG
*
9467757 TTAAAA -TAAAA -TAAAA TAAAAAA TTAAAA TTAAAA TTAAAA
1 TTAAAA TTAAAA TTAAAA T-TAAAA TTAAAA TTAAAA TTAAAA
9467798 AAAACCTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 10 0.32
6 16 0.52
7 5 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (6 bp):
TTAAAA
Found at i:9468750 original size:3 final size:3
Alignment explanation
Indices: 9468742--9468824 Score: 59
Period size: 3 Copynumber: 28.3 Consensus size: 3
9468732 AAAAAGAAAG
* * * *
9468742 TAA TAA TAA TAA TAA TAA TAA -AA GAA -ACA CAA -AA AAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
*
9468785 TAA -AA -AA GACA GTAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9468825 TTATATAAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
2 9 0.13
3 56 0.81
4 3 0.04
5 1 0.01
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.23
Consensus pattern (3 bp):
TAA
Found at i:9468771 original size:55 final size:55
Alignment explanation
Indices: 9468661--9468817 Score: 244
Period size: 55 Copynumber: 2.8 Consensus size: 55
9468651 AAAGGAAAAG
* * * *
9468661 AAAAAAACAAAAATAAAAACGTAA-TAATAATAATAATAATAAAAGAAAAGAAACAC
1 AAAAAAATAAAAATAAAAAAGAAAGTAATAATAATAATAAT--AATAAAAGAAACAC
9468717 AAAAAAATAAAAATAAAAAAGAAAGTAATAATAATAATAATAATAAAAGAAACAC
1 AAAAAAATAAAAATAAAAAAGAAAGTAATAATAATAATAATAATAAAAGAAACAC
*
9468772 AAAAAAATAAAAATAAAAAAGACAGTAATAATAATAATAATAATAA
1 AAAAAAATAAAAATAAAAAAGAAAGTAATAATAATAATAATAATAA
9468818 TAATAATTTA
Statistics
Matches: 95, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
55 58 0.61
56 21 0.22
57 16 0.17
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.17
Consensus pattern (55 bp):
AAAAAAATAAAAATAAAAAAGAAAGTAATAATAATAATAATAATAAAAGAAACAC
Found at i:9468789 original size:5 final size:6
Alignment explanation
Indices: 9468663--9468790 Score: 52
Period size: 6 Copynumber: 20.8 Consensus size: 6
9468653 AGGAAAAGAA
* * * *
9468663 AAAAAC AAAAAT AAAAACGT AATAAT AATAAT AATAAT AAAAGA- AAAGAA-
1 AAAAAT AAAAAT AAAAA--T AAAAAT AAAAAT AAAAAT AAAA-AT AAA-AAT
* * * * *
9468713 ACACAA- AAAAAT AAAAAT AAAAA- AGAAAGT AATAAT AATAAT AATAAT
1 A-AAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT
9468761 AAAAGA- AACACAA- AAAAAT AAAAAT AAAAA
1 AAAA-AT AA-A-AAT AAAAAT AAAAAT AAAAA
9468791 AGACAGTAAT
Statistics
Matches: 101, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
5 6 0.06
6 80 0.79
7 9 0.09
8 6 0.06
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:9468920 original size:26 final size:26
Alignment explanation
Indices: 9468871--9468920 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
9468861 AACACAAATG
* *
9468871 GGCCTAATTGGGCCCAAATGTCAACA
1 GGCCTAATCGGGCCCAAATATCAACA
* *
9468897 GGCCTAATCGGGCCTAGATATCAA
1 GGCCTAATCGGGCCCAAATATCAA
9468921 TGGGCTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (26 bp):
GGCCTAATCGGGCCCAAATATCAACA
Found at i:9469929 original size:4 final size:4
Alignment explanation
Indices: 9469922--9469956 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
9469912 TAATAAATAA
* *
9469922 TAAT TAAT TAAT TAAT TAAT TAAC TATT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
9469957 ATCTCTCTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (4 bp):
TAAT
Found at i:9471830 original size:19 final size:19
Alignment explanation
Indices: 9471806--9471842 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
9471796 TCAAACTTTA
9471806 GAAAAATTGATATTTCAAG
1 GAAAAATTGATATTTCAAG
9471825 GAAAAATTGATATTTCAA
1 GAAAAATTGATATTTCAA
9471843 CTTTTTCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.32
Consensus pattern (19 bp):
GAAAAATTGATATTTCAAG
Found at i:9471954 original size:55 final size:54
Alignment explanation
Indices: 9471826--9472090 Score: 211
Period size: 54 Copynumber: 4.8 Consensus size: 54
9471816 TATTTCAAGG
* * *
9471826 AAAAATTGATATTTCAAC-TTTTTCTTCATTTTTTAAATT-TATTTTATTGAATGA
1 AAAAATTGATATTTCAACTTTTTTC-TCATTTTTTAAATTAT-TTTTGTTTAAAGA
* * *
9471880 AAAAATTAATATTTTAACTTTTTTCTCATTTCTTTAAATTATTTTTGTTTAAAGT
1 AAAAATTGATATTTCAACTTTTTTCTCATTT-TTTAAATTATTTTTGTTTAAAGA
* * * *
9471935 AAAATTTGATAGTTCAACTTTTCTC-CTTTTTTTATAATTATTTTTGTTT-AAGAA
1 AAAAATTGATATTTCAACTTTTTTCTCATTTTTTA-AATTATTTTTGTTTAAAG-A
* * * *
9471989 AAAAACTTAATAATTT-AACTTTTTCCTCAAATTTTGAAATTATTTTCT-TTTAAAG-
1 AAAAA-TTGAT-ATTTCAACTTTTTTCTC-ATTTTTTAAATTATTTT-TGTTTAAAGA
* * * * *
9472044 AAAACTTGATACTTCAACTTTTTCCTCAAATTTTGAAATTTATTTTT
1 AAAAATTGATATTTCAACTTTTTTCTC-ATTTTTTAAA-TTATTTTT
9472091 AATTTTATGG
Statistics
Matches: 174, Mismatches: 24, Indels: 26
0.78 0.11 0.12
Matches are distributed among these distances:
53 10 0.06
54 72 0.41
55 66 0.38
56 17 0.10
57 9 0.05
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (54 bp):
AAAAATTGATATTTCAACTTTTTTCTCATTTTTTAAATTATTTTTGTTTAAAGA
Found at i:9472013 original size:109 final size:108
Alignment explanation
Indices: 9471825--9472153 Score: 278
Period size: 109 Copynumber: 3.0 Consensus size: 108
9471815 ATATTTCAAG
* * *
9471825 GAAAAATTGATATTTCAACTTTTTCTTCATTTTTTAAATTTATTTTATTGAATGAAAAAATTAAT
1 GAAAAATTGATACTTCAAC-TTTTCTCCTTTTTTTAAATTTATTTTATTGAATGAAAAAATTAAT
* * *
9471890 ATTTTAACTTTTTT-CTC-ATTTCTTTAAATTATTTT-TGTTTAAA
65 AATTTAACTTTTTTCCTCAAATT-TTGAAATTATTTTCT-TTTAAA
* * * *
9471933 GTAAAATTTGATAGTTCAACTTTTCTCCTTTTTTTATAA-TTATTTTTGTTTAA-GAAAAAAACT
1 G-AAAAATTGATACTTCAACTTTTCTCCTTTTTTTA-AATTTA-TTTTATTGAATG-AAAAAA-T
9471996 TAATAATTTAAC-TTTTTCCTCAAATTTTGAAATTATTTTCTTTTAAA
61 TAATAATTTAACTTTTTTCCTCAAATTTTGAAATTATTTTCTTTTAAA
* * * ** *
9472043 GAAAACTTGATACTTCAACTTTT-TCCTCAAATTTTGAAATTTATTTTTAATTTTATG-GAAAAT
1 GAAAAATTGATACTTCAACTTTTCTCCT---TTTTTTAAATTTA-TTTT-ATTGAATGAAAAAAT
* * * * *
9472106 TAATATTTTAACCTTTTTCTTACAATTTTTGAAATTATTATTGTTTTA
61 TAATAATTTAACTTTTTTCCT-CAAATTTTGAAATTATT-TTCTTTTA
9472154 GGAAATTAAA
Statistics
Matches: 184, Mismatches: 20, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
108 23 0.12
109 57 0.31
110 48 0.26
111 28 0.15
112 20 0.11
113 8 0.04
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.52
Consensus pattern (108 bp):
GAAAAATTGATACTTCAACTTTTCTCCTTTTTTTAAATTTATTTTATTGAATGAAAAAATTAATA
ATTTAACTTTTTTCCTCAAATTTTGAAATTATTTTCTTTTAAA
Found at i:9472109 original size:110 final size:108
Alignment explanation
Indices: 9471825--9472153 Score: 330
Period size: 110 Copynumber: 3.0 Consensus size: 108
9471815 ATATTTCAAG
* * **
9471825 GAAAAATTGATATTTCAACTTTTTCTTCATTTTTTAAATTTA-TTTTATTGAATGAAAAAATTAA
1 GAAAAATTGATACTTCAACTTTTTCCTCATTTTTTAAATTTATTTTTATTTTATGAAAAAATTAA
* *
9471889 TATTTTAACTTTTTTCTC-ATTTCTTTAAATTATTTTTGTTTAAA
66 TATTTTAACTTTTTCCTCAATTT-TTGAAATTATTTTT-TTTAAA
* * * *
9471933 GTAAAATTTGATAGTTCAACTTTTCTCCT--TTTTTTATAA-TTATTTTT-GTTTAAGAAAAAAA
1 G-AAAAATTGATACTTCAACTTTT-TCCTCATTTTTTA-AATTTATTTTTATTTTATG-AAAAAA
* *
9471994 CTTAATAATTTAACTTTTTCCTCAAATTTTGAAATTATTTTCTTTTAAA
62 -TTAATATTTTAACTTTTTCCTCAATTTTTGAAATTATTTT-TTTTAAA
* * * *
9472043 GAAAACTTGATACTTCAACTTTTTCCTCAAATTTTGAAATTTATTTTTAATTTTATG-GAAAATT
1 GAAAAATTGATACTTCAACTTTTTCCTC-ATTTTTTAAATTTATTTTT-ATTTTATGAAAAAATT
*
9472107 AATATTTTAACCTTTTTCTTACAATTTTTGAAATTATTATTGTTTTA
64 AATATTTTAA-CTTTTTCCT-CAATTTTTGAAATTATT-TT-TTTTA
9472154 GGAAATTAAA
Statistics
Matches: 182, Mismatches: 22, Indels: 29
0.78 0.09 0.12
Matches are distributed among these distances:
108 18 0.10
109 52 0.29
110 55 0.30
111 29 0.16
112 16 0.09
113 12 0.07
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.52
Consensus pattern (108 bp):
GAAAAATTGATACTTCAACTTTTTCCTCATTTTTTAAATTTATTTTTATTTTATGAAAAAATTAA
TATTTTAACTTTTTCCTCAATTTTTGAAATTATTTTTTTTAAA
Found at i:9472144 original size:57 final size:55
Alignment explanation
Indices: 9471880--9472153 Score: 184
Period size: 54 Copynumber: 4.9 Consensus size: 55
9471870 TATTGAATGA
* * * * * *
9471880 AAAAATTAATATTTTAACTTTTTTCTC-ATTTCTTTAAATTATTTTT-GTTTAAAG
1 AAAACTTAATAATTTAACTTTTTCCTCAAATT-TTGAAATTATTTTTATTTTAAAG
* * * * * * * * *
9471934 TAAAATTTGATAGTTCAACTTTTCTCCT---TTTTTTATAATTATTTTTGTTTAAGAAA
1 -AAAACTTAATAATTTAACTTTT-TCCTCAAATTTTGA-AATTATTTTTATTTTA-AAG
*
9471990 AAAACTTAATAATTTAACTTTTTCCTCAAATTTTGAAATTA-TTTTCTTTTAAAG
1 AAAACTTAATAATTTAACTTTTTCCTCAAATTTTGAAATTATTTTTATTTTAAAG
* * * **
9472044 AAAACTTGATACTTCAACTTTTTCCTCAAATTTTGAAATTTATTTTTAATTTTATGG
1 AAAACTTAATAATTTAACTTTTTCCTCAAATTTTGAAA-TTATTTTT-ATTTTAAAG
* * * * *
9472101 AAAA-TTAATATTTTAACCTTTTTCTTACAATTTTTGAAATTATTATTGTTTTA
1 AAAACTTAATAATTTAA-CTTTTTCCT-CAAATTTTGAAATTATTTTTATTTTA
9472154 GGAAATTAAA
Statistics
Matches: 177, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
53 4 0.02
54 54 0.31
55 50 0.28
56 28 0.16
57 30 0.17
58 11 0.06
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.52
Consensus pattern (55 bp):
AAAACTTAATAATTTAACTTTTTCCTCAAATTTTGAAATTATTTTTATTTTAAAG
Found at i:9472957 original size:9 final size:9
Alignment explanation
Indices: 9472934--9472999 Score: 53
Period size: 9 Copynumber: 7.1 Consensus size: 9
9472924 AAAATGAAGG
*
9472934 ATAAAAACA
1 ATAAAAATA
*
9472943 AAAAAAATA
1 ATAAAAATA
9472952 ATAAAAATA
1 ATAAAAATA
*
9472961 ATAAAAAGA
1 ATAAAAATA
*
9472970 TTTAAAAA-A
1 -ATAAAAATA
9472979 ACTAAAAATA
1 A-TAAAAATA
*
9472989 GATATAAATA
1 -ATAAAAATA
9472999 A
1 A
9473000 AAATCTCAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
9 31 0.67
10 14 0.30
11 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (9 bp):
ATAAAAATA
Found at i:9472978 original size:21 final size:21
Alignment explanation
Indices: 9472936--9473001 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
9472926 AATGAAGGAT
*
9472936 AAAAAC-AAAAAAA-ATA-AT
1 AAAAACTAAAAAAAGATATAA
*
9472954 AAAAA-TAATAAAAAGATTTAA
1 AAAAACTAA-AAAAAGATATAA
*
9472975 AAAAACTAAAAATAGATATAA
1 AAAAACTAAAAAAAGATATAA
9472996 ATAAAA
1 A-AAAA
9473002 ATCTCAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 7 0.18
19 5 0.13
20 2 0.05
21 17 0.45
22 7 0.18
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (21 bp):
AAAAACTAAAAAAAGATATAA
Found at i:9473267 original size:22 final size:22
Alignment explanation
Indices: 9473218--9473269 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
9473208 ATGTACAAAG
*
9473218 ATTTGAAATTCAAAGGTTTTCA
1 ATTTGAAATTCAAAGGTTATCA
* *
9473240 ACTTGAAATTCAAATGTTCAT-A
1 ATTTGAAATTCAAAGGTT-ATCA
9473262 ATTTGAAA
1 ATTTGAAA
9473270 CTGAAGAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (22 bp):
ATTTGAAATTCAAAGGTTATCA
Found at i:9473336 original size:31 final size:31
Alignment explanation
Indices: 9473299--9473362 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
9473289 ATTAAAAGGT
9473299 TTGCATTTTGAAATTCAAAGATTATTAAAAA
1 TTGCATTTTGAAATTCAAAGATTATTAAAAA
*
9473330 TTGCATTTTGAAATTCAAAGATTCTTAAAAA
1 TTGCATTTTGAAATTCAAAGATTATTAAAAA
9473361 TT
1 TT
9473363 CAAAGGTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (31 bp):
TTGCATTTTGAAATTCAAAGATTATTAAAAA
Found at i:9473548 original size:17 final size:17
Alignment explanation
Indices: 9473471--9473552 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
9473461 TAGGTTTTTG
* *
9473471 GATTCACAAGATTTGAA
1 GATTCGCAAGATTTTAA
* *
9473488 GCTTTGCAAGATTTTAA
1 GATTCGCAAGATTTTAA
* * * ** *
9473505 CATTTGCAAAAACTAAA
1 GATTCGCAAGATTTTAA
* *
9473522 AATTCACAAGATTTTAA
1 GATTCGCAAGATTTTAA
9473539 GATTCGCAAGATTT
1 GATTCGCAAGATTT
9473553 CATATTCATA
Statistics
Matches: 46, Mismatches: 19, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (17 bp):
GATTCGCAAGATTTTAA
Found at i:9473587 original size:17 final size:17
Alignment explanation
Indices: 9473567--9473619 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
9473557 TTCATAAAAA
9473567 TTGAAGATTCACAACAT
1 TTGAAGATTCACAACAT
* * * *
9473584 TTGAAAATTCATAAAAA
1 TTGAAGATTCACAACAT
*
9473601 TTGAAGATTCGCAACAT
1 TTGAAGATTCACAACAT
9473618 TT
1 TT
9473620 CAAAACTTTG
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (17 bp):
TTGAAGATTCACAACAT
Found at i:9473596 original size:34 final size:34
Alignment explanation
Indices: 9473537--9473624 Score: 124
Period size: 34 Copynumber: 2.6 Consensus size: 34
9473527 ACAAGATTTT
* * *
9473537 AAGATTCGCAAGATTTC-ATATTCATAAAAATTG
1 AAGATTCACAACATTTCAAAATTCATAAAAATTG
*
9473570 AAGATTCACAACATTTGAAAATTCATAAAAATTG
1 AAGATTCACAACATTTCAAAATTCATAAAAATTG
*
9473604 AAGATTCGCAACATTTCAAAA
1 AAGATTCACAACATTTCAAAA
9473625 CTTTGCCACT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 14 0.29
34 34 0.71
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.30
Consensus pattern (34 bp):
AAGATTCACAACATTTCAAAATTCATAAAAATTG
Found at i:9475147 original size:7 final size:7
Alignment explanation
Indices: 9475135--9475168 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
9475125 TTCTCTCATT
*
9475135 TTTTTTC
1 TTTTTTA
*
9475142 TTTTTTC
1 TTTTTTA
9475149 TTTTTTA
1 TTTTTTA
9475156 TTTTTTA
1 TTTTTTA
9475163 TTTTTT
1 TTTTTT
9475169 TTCACATCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:9478060 original size:74 final size:74
Alignment explanation
Indices: 9477939--9478091 Score: 234
Period size: 74 Copynumber: 2.1 Consensus size: 74
9477929 CCTTAAATTC
* * *
9477939 TATATACCACAATTACCATGCTTATTTTACTAAGTGTTTATGAAAGAAAGTTTTAGAAATTAACC
1 TATATACCACAATGACCATGCTCATTTTACTAAGTGTTTATGAAAGAAAGTTTTAGAAATTAAAC
9478004 CAACTACCT
66 CAACTACCT
* * *
9478013 TATATACCATAATGACCATGCTCATTTTACTAAGTGTTTATGTAAGAAAGTTTTAGAGATTAAAC
1 TATATACCACAATGACCATGCTCATTTTACTAAGTGTTTATGAAAGAAAGTTTTAGAAATTAAAC
**
9478078 CAACTTGCT
66 CAACTACCT
9478087 TATAT
1 TATAT
9478092 GGTATTATGG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (74 bp):
TATATACCACAATGACCATGCTCATTTTACTAAGTGTTTATGAAAGAAAGTTTTAGAAATTAAAC
CAACTACCT
Found at i:9478143 original size:16 final size:16
Alignment explanation
Indices: 9478122--9478154 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9478112 AGTTGGGTTA
9478122 ATTAAATTTGAGTGAG
1 ATTAAATTTGAGTGAG
9478138 ATTAAATTTGAGTGAG
1 ATTAAATTTGAGTGAG
9478154 A
1 A
9478155 GAATTTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (16 bp):
ATTAAATTTGAGTGAG
Found at i:9478635 original size:55 final size:53
Alignment explanation
Indices: 9478570--9479084 Score: 328
Period size: 55 Copynumber: 9.3 Consensus size: 53
9478560 CAAGGAAATT
* * *
9478570 TTGATATTTCAACTTTTTTTCCAAAATCTTGAAATTATTTTTAATTTAAGAAAAA
1 TTGATATTTCAAC-TTTTTTCC-AATTTTTGAAATTATTTTTAGTTTAAGAAAAA
* * * *
9478625 TTGATATTTCAACTTTTTTCTAAATTTTTAAAATTATTTTT-GCTGAATGAAAAAAA
1 TTGATATTTCAACTTTTTTC-CAATTTTTGAAATTATTTTTAGTTTAA-G--AAAAA
* * * * *
9478681 TTTAATATTTAAAC-TCTTTCCTTATTTCTTGAAATTATTTTT-GTTTTAAGGAAAA
1 -TTGATATTTCAACTTTTTTCC-AATTT-TTGAAATTATTTTTAG-TTTAAGAAAAA
* * * *
9478736 TGTGATATTTCAACCTTTTCCTCATTTTTTGAAATTATTTTTTGTTTAAGGAAAAA
1 T-TGATATTTCAACTTTTTTC-CAATTTTTGAAATTATTTTTAGTTTAA-GAAAAA
* * * * *
9478792 TTGATATTTCAACTTTTTTCTCATTTTTTTACAATTAATTTT-GTCTAAGGAAAAT
1 TTGATATTTCAACTTTTTTC-CAATTTTTGA-AATTATTTTTAGTTTAA-GAAAAA
* * *
9478847 TTGATGTTTCAA-TTTTTTCCTCATCTTTTTATAATTATTTTT-GTTTAAGAAAAA
1 TTGATATTTCAACTTTTTTCC-AAT-TTTTGA-AATTATTTTTAGTTTAAGAAAAA
* * * * * *
9478901 TTTATTATTTCAACTTTTTACTCACTTTTTAAAATTATTTTTTGTTTAAGGAAAA
1 TTGA-TATTTCAACTTTTTTC-CAATTTTTGAAATTATTTTTAGTTTAAGAAAAA
* * * *
9478956 TTAATAATTT-AACTTTTTTTATCAAATTTTAAAATTA-TTTTAGTTTAAGAAAAAAA
1 TTGAT-ATTTCAAC-TTTTTT-CCAATTTTTGAAATTATTTTTAGTTTAAG--AAAAA
* * * ** *
9479012 TTGATACTTAAACTTTTTCCTCAAAATTTGAAATTTATTTTTTATTTTAAG-AAAA
1 TTGATATTTCAACTTTTTTC-CAATTTTTGAAA-TTA-TTTTTAGTTTAAGAAAAA
* *
9479067 TTAATATTTTAACTTTTT
1 TTGATATTTCAACTTTTT
9479085 CCTTACAATT
Statistics
Matches: 370, Mismatches: 60, Indels: 60
0.76 0.12 0.12
Matches are distributed among these distances:
53 4 0.01
54 66 0.18
55 200 0.54
56 58 0.16
57 28 0.08
58 14 0.04
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (53 bp):
TTGATATTTCAACTTTTTTCCAATTTTTGAAATTATTTTTAGTTTAAGAAAAA
Found at i:9478973 original size:110 final size:110
Alignment explanation
Indices: 9478601--9479084 Score: 409
Period size: 110 Copynumber: 4.4 Consensus size: 110
9478591 CAAAATCTTG
** * *
9478601 AAATTATTTTTAATTTAAGAAAAATTGATATTTCAACTTTTTT-CT-AAATTTTTAAAATTATTT
1 AAATTATTTTTTGTTTAAGGAAAATTGATATTTCAACTTTTTTCCTCATATTTTTAAAATTATTT
* * * * * * *
9478664 TTGCTGAATGAAAAAAATTTAATATTTAAACTCTTTCCTTATTTCTTG
66 TTGTTTAA-GGAAAAAA-TTGATATTTAAACTTTTTCCTCATTT-TTA
* *
9478712 AAATTA-TTTTTGTTTTAAGGAAAATGTGATATTTCAAC-CTTTTCCTCAT-TTTTTGAAATTAT
1 AAATTATTTTTTG-TTTAAGGAAAAT-TGATATTTCAACTTTTTTCCTCATATTTTTAAAATTA-
* *
9478774 TTTTTGTTTAAGG-AAAAATTGATATTTCAACTTTTTTCTCATTTTTTTA
63 TTTTTGTTTAAGGAAAAAATTGATATTTAAACTTTTTCCTCA--TTTTTA
* * * * * *
9478823 CAATTA-ATTTTGTCTAAGGAAAATTTGATGTTTCAA-TTTTTTCCTCATCTTTTTATAATTATT
1 AAATTATTTTTTGTTTAAGGAAAA-TTGATATTTCAACTTTTTTCCTCATATTTTTAAAATTATT
* * *
9478886 TTTGTTTAA-G-AAAAATTTATTATTTCAACTTTTTACTCACTTTTTA
65 TTTGTTTAAGGAAAAAATTGA-TATTTAAACTTTTTCCTCA-TTTTTA
* ** *
9478932 AAATTATTTTTTGTTTAAGGAAAATTAATAATTT-AACTTTTTTTATCA-AATTTTAAAATTATT
1 AAATTATTTTTTGTTTAAGGAAAATTGAT-ATTTCAACTTTTTTCCTCATATTTTTAAAATTATT
* * * * *
9478995 TTAGTTTAAGAAAAAAATTGATACTTAAACTTTTTCCTCAAAATTTGA
65 TTTGTTTAAGGAAAAAATTGATATTTAAACTTTTTCCTC--ATTTTTA
* * * *
9479043 AATTTATTTTTTATTTTAA-GAAAATTAATATTTTAACTTTTT
1 AAATTATTTTTT-GTTTAAGGAAAATTGATATTTCAACTTTTT
9479085 CCTTACAATT
Statistics
Matches: 308, Mismatches: 45, Indels: 40
0.78 0.11 0.10
Matches are distributed among these distances:
109 46 0.15
110 127 0.41
111 90 0.29
112 35 0.11
113 10 0.03
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.51
Consensus pattern (110 bp):
AAATTATTTTTTGTTTAAGGAAAATTGATATTTCAACTTTTTTCCTCATATTTTTAAAATTATTT
TTGTTTAAGGAAAAAATTGATATTTAAACTTTTTCCTCATTTTTA
Found at i:9479083 original size:165 final size:161
Alignment explanation
Indices: 9478601--9479084 Score: 458
Period size: 165 Copynumber: 2.9 Consensus size: 161
9478591 CAAAATCTTG
** *
9478601 AAATTATTTTTAATTTAAGAAAAATTGATATTTCAACTTTTTTCTA--AATTTTTAAAATTATTT
1 AAATTATTTTTTGTTTAAGGAAAATTGATATTTCAACTTTTTT-TATCAATTTTTAAAATTA-TT
* * * * * *
9478664 TTGCTGAATGAAAAAAATTTAATATTTAAACTCTTTCCT-TATTTCTTGAAATTATTTTTGTTTT
64 TTGTTTAA-GAAAAAAA-TTGATATTTAAACTTTTTCCTCAAATT-TTGAAATTATTTTT-TTTT
* * * * *
9478728 AAGGAAAATGTGATATTTCAACCTTTTCCTCATTTTTTG
125 AA-GAAAAT-TAATATTTCAACTTTTTACTCACTTTTTA
* * *
9478767 AAATTATTTTTTGTTTAAGGAAAAATTGATATTTCAAC-TTTTTTCTCATTTTTTTACAATTAAT
1 AAATTATTTTTTGTTTAAGG-AAAATTGATATTTCAACTTTTTTTATCA-ATTTTTAAAATT-AT
* * * * * * ** * *
9478831 TTTGTCTAAG-GAAAATTTGATGTTTCAATTTTTTCCTCATCTTTTTATAATTATTTTTGTTTAA
63 TTTGTTTAAGAAAAAAATTGATATTTAAACTTTTTCCTCAAATTTTGA-AATTATTTTTTTTTAA
*
9478895 GAAAAATTTATTATTTCAACTTTTTACTCACTTTTTA
127 G-AAAA-TTAATATTTCAACTTTTTACTCACTTTTTA
* *
9478932 AAATTATTTTTTGTTTAAGGAAAATTAATAATTT-AACTTTTTTTATCAAATTTTAAAATTATTT
1 AAATTATTTTTTGTTTAAGGAAAATTGAT-ATTTCAACTTTTTTTATCAATTTTTAAAATTATTT
* *
9478996 TAGTTTAAGAAAAAAATTGATACTTAAACTTTTTCCTCAAAATTTGAAATTTATTTTTTATTTTA
65 T-GTTTAAGAAAAAAATTGATATTTAAACTTTTTCCTCAAATTTTGAAA-TTA-TTTTT-TTTTA
*
9479061 AGAAAATTAATATTTTAACTTTTT
126 AGAAAATTAATATTTCAACTTTTT
9479085 CCTTACAATT
Statistics
Matches: 256, Mismatches: 46, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
163 5 0.02
164 29 0.11
165 131 0.51
166 48 0.19
167 25 0.10
168 17 0.07
169 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.51
Consensus pattern (161 bp):
AAATTATTTTTTGTTTAAGGAAAATTGATATTTCAACTTTTTTTATCAATTTTTAAAATTATTTT
GTTTAAGAAAAAAATTGATATTTAAACTTTTTCCTCAAATTTTGAAATTATTTTTTTTTAAGAAA
ATTAATATTTCAACTTTTTACTCACTTTTTA
Found at i:9483244 original size:29 final size:30
Alignment explanation
Indices: 9483211--9483276 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
9483201 TCATATTTTA
* *
9483211 AAATAAATTTTTATATTTTTA-TTATATTC
1 AAATAAATTCTTATATTTTGATTTATATTC
*
9483240 AAATAAGTTCTTATATTTTGATTTATATTC
1 AAATAAATTCTTATATTTTGATTTATATTC
9483270 AAATAAA
1 AAATAAA
9483277 CCATTATTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.52
Consensus pattern (30 bp):
AAATAAATTCTTATATTTTGATTTATATTC
Found at i:9487892 original size:7 final size:7
Alignment explanation
Indices: 9487873--9487904 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
9487863 GCTTGCCTTC
9487873 ATCATGT
1 ATCATGT
9487880 -TCATGT
1 ATCATGT
9487886 ATCATGT
1 ATCATGT
9487893 ATCATGT
1 ATCATGT
9487900 ATCAT
1 ATCAT
9487905 TCATGTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (7 bp):
ATCATGT
Found at i:9491489 original size:17 final size:17
Alignment explanation
Indices: 9491463--9491496 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9491453 TTTGATTGTT
9491463 TTTTAATTTTTATTTTA
1 TTTTAATTTTTATTTTA
*
9491480 TTTTATTTTTTATTTTA
1 TTTTAATTTTTATTTTA
9491497 GTTGTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTAATTTTTATTTTA
Found at i:9492597 original size:23 final size:23
Alignment explanation
Indices: 9492531--9492598 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
9492521 CTATTTTTAG
*
9492531 TAATTTATTTCATTTATTTATTATC
1 TAATTTATTT-ATTTATTTA-TATA
** *
9492556 TAACCCT-TTTATTTTTTTATATA
1 TAA-TTTATTTATTTATTTATATA
9492579 TAATTTATTTATTTATTTAT
1 TAATTTATTTATTTATTTAT
9492599 TTAACCCTGT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
22 1 0.03
23 18 0.53
24 8 0.24
25 6 0.18
26 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TAATTTATTTATTTATTTATATA
Found at i:9495439 original size:21 final size:21
Alignment explanation
Indices: 9495414--9495459 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
9495404 AGATAAAACA
9495414 AAATAAAGATA-ATTAAGAAAT
1 AAATAAAGATATA-TAAGAAAT
9495435 AAATAAAGATATATAAGAAAT
1 AAATAAAGATATATAAGAAAT
9495456 AAAT
1 AAAT
9495460 CACTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (21 bp):
AAATAAAGATATATAAGAAAT
Found at i:9495492 original size:17 final size:16
Alignment explanation
Indices: 9495470--9495517 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 16
9495460 CACTAAATAA
*
9495470 AAATAACTAGTGAAGAT
1 AAATAACTA-TAAAGAT
9495487 AAATAATCTATAAAGAT
1 AAATAA-CTATAAAGAT
9495504 AAATAACCTATAAA
1 AAATAA-CTATAAA
9495518 TAAAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 25 0.89
18 3 0.11
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.25
Consensus pattern (16 bp):
AAATAACTATAAAGAT
Found at i:9495524 original size:17 final size:16
Alignment explanation
Indices: 9495463--9495526 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
9495453 AATAAATCAC
*
9495463 TAAATAAAAATAACTA
1 TAAAGAAAAATAACTA
* *
9495479 GTGAAGATAAATAATCTA
1 -TAAAGAAAAATAA-CTA
*
9495497 TAAAGATAAATAACCTA
1 TAAAGAAAAATAA-CTA
*
9495514 TAAATAAAAATAA
1 TAAAGAAAAATAA
9495527 AAAATTAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 36 0.92
18 3 0.08
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (16 bp):
TAAAGAAAAATAACTA
Found at i:9495895 original size:20 final size:20
Alignment explanation
Indices: 9495870--9495907 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9495860 CAAATGTTTG
*
9495870 CAATTTGAAATTCAAAGACT
1 CAATTTAAAATTCAAAGACT
*
9495890 CAATTTAAAATTTAAAGA
1 CAATTTAAAATTCAAAGA
9495908 TTCACAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.32
Consensus pattern (20 bp):
CAATTTAAAATTCAAAGACT
Found at i:9495926 original size:20 final size:18
Alignment explanation
Indices: 9495903--9495986 Score: 69
Period size: 20 Copynumber: 4.4 Consensus size: 18
9495893 TTTAAAATTT
*
9495903 AAAGATTCACAATTAGATTC
1 AAAGATTCACAA-AAGA-TC
*
9495923 AAAGGTTCACAAAAGATC
1 AAAGATTCACAAAAGATC
* *
9495941 AAATATTCACAAAAAAAATC
1 AAAGATTCAC--AAAAGATC
* *
9495961 AAAGATTCAAAAAAGGTC
1 AAAGATTCACAAAAGATC
*
9495979 AAAAATTC
1 AAAGATTC
9495987 GTAAGAGTTC
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 23 0.44
19 3 0.06
20 26 0.50
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (18 bp):
AAAGATTCACAAAAGATC
Found at i:9495949 original size:18 final size:18
Alignment explanation
Indices: 9495928--9495986 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
9495918 GATTCAAAGG
*
9495928 TTCACAAAAGATCAAATA
1 TTCACAAAAGATCAAAAA
* *
9495946 TTCACAAAAAAAATCAAAGA
1 TTCAC--AAAAGATCAAAAA
* *
9495966 TTCAAAAAAGGTCAAAAA
1 TTCACAAAAGATCAAAAA
9495984 TTC
1 TTC
9495987 GTAAGAGTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
18 18 0.55
20 15 0.45
ACGTcount: A:0.58, C:0.15, G:0.07, T:0.20
Consensus pattern (18 bp):
TTCACAAAAGATCAAAAA
Found at i:9496251 original size:19 final size:18
Alignment explanation
Indices: 9496227--9496268 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
9496217 TCAAGAACTA
9496227 AAAGATTCATAAGAAAATC
1 AAAGATTCATAA-AAAATC
* *
9496246 AAAGATTCGTAAAAATTC
1 AAAGATTCATAAAAAATC
9496264 AAAGA
1 AAAGA
9496269 ATTGCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.21
Consensus pattern (18 bp):
AAAGATTCATAAAAAATC
Found at i:9496267 original size:18 final size:18
Alignment explanation
Indices: 9496155--9496268 Score: 65
Period size: 18 Copynumber: 6.3 Consensus size: 18
9496145 CCTAACGTTT
* *
9496155 AAAGGTTCGTAAAATTTTC
1 AAAGATTCGTAAAA-ATTC
* *
9496174 AAA-ATTAGTAAAAATCC
1 AAAGATTCGTAAAAATTC
*
9496191 AAAAATTC--AAAAGACTTC
1 AAAGATTCGTAAAA-A-TTC
* * *
9496209 AAAGATTC-TCAAGAACTA
1 AAAGATTCGT-AAAAATTC
* *
9496227 AAAGATTCATAAGAAAATC
1 AAAGATTCGTAA-AAATTC
9496246 AAAGATTCGTAAAAATTC
1 AAAGATTCGTAAAAATTC
9496264 AAAGA
1 AAAGA
9496269 ATTGCAAAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 15
0.71 0.15 0.15
Matches are distributed among these distances:
16 4 0.05
17 6 0.08
18 41 0.56
19 19 0.26
20 3 0.04
ACGTcount: A:0.53, C:0.12, G:0.11, T:0.25
Consensus pattern (18 bp):
AAAGATTCGTAAAAATTC
Found at i:9496302 original size:17 final size:16
Alignment explanation
Indices: 9496257--9496303 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
9496247 AAGATTCGTA
*
9496257 AAAATTCAAAGAATTGC
1 AAAATT-AAAGATTTGC
9496274 AAAATTAAAGATTTGC
1 AAAATTAAAGATTTGC
*
9496290 AATATTTAAAGATT
1 AA-AATTAAAGATT
9496304 CACAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (16 bp):
AAAATTAAAGATTTGC
Found at i:9496379 original size:21 final size:21
Alignment explanation
Indices: 9496355--9496423 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
9496345 CATTTTTTAA
9496355 AAAACTTAGAGATTCACATCC
1 AAAACTTAGAGATTCACATCC
* * **
9496376 AAAA-TTCAAATATTCACATTTG
1 AAAACTT-AGAGATTCACA-TCC
*
9496398 AAAATCTTAGAGATTCACACCC
1 AAAA-CTTAGAGATTCACATCC
9496420 AAAA
1 AAAA
9496424 GCAAAAAAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 7
0.69 0.18 0.14
Matches are distributed among these distances:
20 2 0.06
21 13 0.37
22 9 0.26
23 9 0.26
24 2 0.06
ACGTcount: A:0.46, C:0.20, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAACTTAGAGATTCACATCC
Found at i:9497257 original size:16 final size:16
Alignment explanation
Indices: 9497229--9497263 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
9497219 AGAAAGGGAT
9497229 AATCAATACAAAAACA
1 AATCAATACAAAAACA
9497245 AATCTAATA-AAAAACA
1 AATC-AATACAAAAACA
9497261 AAT
1 AAT
9497264 AGGCAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (16 bp):
AATCAATACAAAAACA
Found at i:9497581 original size:19 final size:19
Alignment explanation
Indices: 9497532--9497581 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
9497522 TTTCCTTTTC
*
9497532 TTTTTTTTCTT-TTTTTCA
1 TTTTTTTTCTTCTTTCTCA
***
9497550 TTTTTTCAGTTCTTTCTCA
1 TTTTTTTTCTTCTTTCTCA
9497569 TTTTTTTTCTTCT
1 TTTTTTTTCTTCT
9497582 CATTTTCTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTTTTTCTTCTTTCTCA
Found at i:9497583 original size:15 final size:15
Alignment explanation
Indices: 9497563--9497592 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9497553 TTTCAGTTCT
*
9497563 TTCTCATTTTTTTTC
1 TTCTCATTTTCTTTC
9497578 TTCTCATTTTCTTTC
1 TTCTCATTTTCTTTC
9497593 ACTTTATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTCATTTTCTTTC
Found at i:9501892 original size:16 final size:13
Alignment explanation
Indices: 9501862--9501887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9501852 TCCAAAAAAT
9501862 ATTATTTTTTAAA
1 ATTATTTTTTAAA
9501875 ATTATTTTTTAAA
1 ATTATTTTTTAAA
9501888 CAAATAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTTTTTAAA
Found at i:9502810 original size:21 final size:21
Alignment explanation
Indices: 9502784--9502825 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9502774 AGATAAAAAC
9502784 AAAGATA-ATTAAAAAATAAAT
1 AAAGATATA-TAAAAAATAAAT
*
9502805 AAAGATATATAAGAAATAAAT
1 AAAGATATATAAAAAATAAAT
9502826 CACTAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (21 bp):
AAAGATATATAAAAAATAAAT
Found at i:9502873 original size:17 final size:17
Alignment explanation
Indices: 9502829--9502875 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
9502819 AATAAATCAC
9502829 TAAATAAAAATAACTAA
1 TAAATAAAAATAACTAA
* * *
9502846 TGAACATAAATAACCT-A
1 TAAATAAAAATAA-CTAA
9502863 TAAATAAAAATAA
1 TAAATAAAAATAA
9502876 ATAAAAAAGC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (17 bp):
TAAATAAAAATAACTAA
Found at i:9505581 original size:25 final size:24
Alignment explanation
Indices: 9505552--9505636 Score: 62
Period size: 25 Copynumber: 3.4 Consensus size: 24
9505542 AAATATACAT
*
9505552 TTGCATCATTGTTGGAATTGTGCA
1 TTGCATCATTGTTCGAATTGTGCA
* * **
9505576 TATGCATAATTATTCGAATCATGCA
1 T-TGCATCATTGTTCGAATTGTGCA
* * *
9505601 TTCGCATCATGGTTTGAATTGGGCA
1 TT-GCATCATTGTTCGAATTGTGCA
*
9505626 TTTGAATCATT
1 -TTGCATCATT
9505637 TAGTGAGTTT
Statistics
Matches: 44, Mismatches: 14, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
24 2 0.05
25 40 0.91
26 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (24 bp):
TTGCATCATTGTTCGAATTGTGCA
Found at i:9506403 original size:44 final size:45
Alignment explanation
Indices: 9506327--9506824 Score: 415
Period size: 44 Copynumber: 11.2 Consensus size: 45
9506317 TTTAGATATA
* * *
9506327 AATCTCTAAAATTTTTCAAATTTAAAAT-TTTGAATTTCAAATGT-
1 AATCTCTAAAATTTTTCAAATAT-GAATCTTTGAATTTTAAATGTG
*
9506371 AATTCTCTAAAA-TTTTCAAATATGAATCTTTGAATTTTAAAAGTG
1 AA-TCTCTAAAATTTTTCAAATATGAATCTTTGAATTTTAAATGTG
* * * *
9506416 AATCTGTAAAA-TTTTCAAATGA-GAATTTTTGAATTCTATATGTG
1 AATCTCTAAAATTTTTCAAAT-ATGAATCTTTGAATTTTAAATGTG
* * *
9506460 AATTTCTAAAATTTTTCAAATGA-GAATCTTTTAATTTTAAATATG
1 AATCTCTAAAATTTTTCAAAT-ATGAATCTTTGAATTTTAAATGTG
* * * *
9506505 AATCTCTAAAA-TTTTCTAATGTGAATATTTGAA-TGTAAGATGTG
1 AATCTCTAAAATTTTTCAAATATGAATCTTTGAATTTTAA-ATGTG
* * *
9506549 AATCTCTAAAATTTTTCAAATATGAATCTTT-AACTTCATATGTG
1 AATCTCTAAAATTTTTCAAATATGAATCTTTGAATTTTAAATGTG
* * * *
9506593 AATTTCT-AAATCTATT-AAATGTGAA-CTTTTGAATTTTAGATGTG
1 AATCTCTAAAAT-TTTTCAAATATGAATC-TTTGAATTTTAAATGTG
* *
9506637 AATCTCTAAAATTTCTTC-AA-ATGCAAACTTTGAATTTTAAATGTC
1 AATCTCTAAAATTT-TTCAAATATG-AATCTTTGAATTTTAAATGTG
* **
9506682 AATCTATAAAATTTTTCAAA-AGTGAATCTTTGAATTTTTTATGTG
1 AATCTCTAAAATTTTTCAAATA-TGAATCTTTGAATTTTAAATGTG
* * *
9506727 AATCTCT-AAATTTTTCAAAT-TCAAAAC-TTGATATTTTAGATGTG
1 AATCTCTAAAATTTTTCAAATAT-GAATCTTTGA-ATTTTAAATGTG
* * * * *
9506771 AATTTTTGAAAA-TTTTCAAATGTGAATCTTT-AACTTTAATTGTG
1 AATCTCT-AAAATTTTTCAAATATGAATCTTTGAATTTTAAATGTG
*
9506815 AATCTTTAAA
1 AATCTCTAAA
9506825 TTTAAAATTT
Statistics
Matches: 370, Mismatches: 58, Indels: 53
0.77 0.12 0.11
Matches are distributed among these distances:
42 1 0.00
43 30 0.08
44 185 0.50
45 145 0.39
46 9 0.02
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (45 bp):
AATCTCTAAAATTTTTCAAATATGAATCTTTGAATTTTAAATGTG
Found at i:9506443 original size:133 final size:133
Alignment explanation
Indices: 9506287--9506824 Score: 472
Period size: 133 Copynumber: 4.0 Consensus size: 133
9506277 GAAAACTTTT
* * * * *
9506287 TAAAATTTTTTCAAGTGTA-AATTTTTTAACTTTAGATATAAATCTCTAAAATTTTTCAAATTTA
1 TAAAA-TTTTTCAAATG-AGAATTTTTGAACTTTATATGTGAATCTCT-AAATTTTTCAAATTTA
* *
9506351 AAATTTTGAATTTCAAATGT-AATTCTCTAAAATTTTCAAATATGAATCTTTGAATTTTAAAAGT
63 AAATTTTGAATTTTAAATGTGAA-TCTCTAAAATTTTCAAATATGAATCTTTGAATTTTAAATGT
*
9506415 GAATCTG
127 GAATCTA
* * *
9506422 TAAAA-TTTTCAAATGAGAATTTTTGAA-TTCTATATGTGAATTTCTAAAATTTTTCAAA-TGAG
1 TAAAATTTTTCAAATGAGAATTTTTGAACTT-TATATGTGAATCTCT-AAATTTTTCAAATTTAA
* * * * * *
9506484 AATCTTTTAATTTTAAATATGAATCTCTAAAATTTTCTAATGTGAATATTTGAA-TGTAAGATGT
64 AAT-TTTGAATTTTAAATGTGAATCTCTAAAATTTTCAAATATGAATCTTTGAATTTTAA-ATGT
*
9506548 GAATCTC
127 GAATCTA
* * * * * *
9506555 TAAAATTTTTCAAAT-ATGAATCTTT-AACTTCATATGTGAATTTCTAAATCTATT-AAATGTGA
1 TAAAATTTTTCAAATGA-GAATTTTTGAACTTTATATGTGAATCTCTAAAT-TTTTCAAATTTAA
* * *
9506617 ACTTTTGAATTTTAGATGTGAATCTCTAAAATTTCTTC-AA-ATGCAAACTTTGAATTTTAAATG
64 AATTTTGAATTTTAAATGTGAATCTCTAAAA-TT-TTCAAATATG-AATCTTTGAATTTTAAATG
*
9506680 TCAATCTA
126 TGAATCTA
* * * * * *
9506688 TAAAATTTTTCAAAAGTGAATCTTTGAATTTTTTATGTGAATCTCTAAATTTTTCAAATTCAAAA
1 TAAAATTTTTCAAATGAGAATTTTTGAACTTTATATGTGAATCTCTAAATTTTTCAAATTTAAAA
* * * * * * *
9506753 -CTTGATATTTTAGATGTGAATTTTTGAAAATTTTCAAATGTGAATCTTT-AACTTTAATTGTGA
66 TTTTGA-ATTTTAAATGTGAATCTCT-AAAATTTTCAAATATGAATCTTTGAATTTTAAATGTGA
*
9506816 ATCTT
129 ATCTA
9506821 TAAA
1 TAAA
9506825 TTTAAAATTT
Statistics
Matches: 328, Mismatches: 54, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
132 46 0.14
133 191 0.58
134 80 0.24
135 11 0.03
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (133 bp):
TAAAATTTTTCAAATGAGAATTTTTGAACTTTATATGTGAATCTCTAAATTTTTCAAATTTAAAA
TTTTGAATTTTAAATGTGAATCTCTAAAATTTTCAAATATGAATCTTTGAATTTTAAATGTGAAT
CTA
Found at i:9506507 original size:21 final size:22
Alignment explanation
Indices: 9506380--9506581 Score: 98
Period size: 21 Copynumber: 9.1 Consensus size: 22
9506370 TAATTCTCTA
9506380 AAATTTTCAAATATGAATCTTT
1 AAATTTTCAAATATGAATCTTT
* *
9506402 GAATTTT-AAA-AGTGAATCTGTA
1 AAATTTTCAAATA-TGAATCT-TT
*
9506424 AAATTTTCAAATGA-GAATTTTT
1 AAATTTTCAAAT-ATGAATCTTT
* * * *
9506446 GAATTCT-ATATGTGAAT-TTCT
1 AAATTTTCAAATATGAATCTT-T
9506467 AAAATTTTTCAAATGA-GAATCTTT
1 -AAA-TTTTCAAAT-ATGAATCTTT
* *
9506491 TAATTTT-AAATATGAATCTCTA
1 AAATTTTCAAATATGAATCT-TT
* * *
9506513 AAATTTTCTAATGTGAATATTT
1 AAATTTTCAAATATGAATCTTT
* * * *
9506535 GAA-TGT-AAGATGTGAATCTCTA
1 AAATTTTCAA-ATATGAATCT-TT
9506557 AAATTTTTCAAATATGAATCTTT
1 AAA-TTTTCAAATATGAATCTTT
9506580 AA
1 AA
9506582 CTTCATATGT
Statistics
Matches: 131, Mismatches: 29, Indels: 39
0.66 0.15 0.20
Matches are distributed among these distances:
20 5 0.04
21 39 0.30
22 38 0.29
23 25 0.19
24 19 0.15
25 5 0.04
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.43
Consensus pattern (22 bp):
AAATTTTCAAATATGAATCTTT
Found at i:9506798 original size:89 final size:88
Alignment explanation
Indices: 9506327--9506824 Score: 401
Period size: 89 Copynumber: 5.6 Consensus size: 88
9506317 TTTAGATATA
* * * *
9506327 AATCTCTAAAATTTTTCAAATTTAAAAT-TTTGAATTTCAAATGT-AATTCTCTAAAA-TTTTCA
1 AATCTCTAAAA-TTTTCAAATGT-GAATCTTTGAATTTTAGATGTGAA-TCTCTAAAATTTTTCA
* * *
9506389 AATAT-GAATCTTTGAATTTTAAAAGTG
63 AAT-TCAAAAC-TTGAATTTTAAATGTG
* * * * * *
9506416 AATCTGTAAAATTTTCAAATGAGAATTTTTGAATTCTATATGTGAATTTCTAAAATTTTTCAAA-
1 AATCTCTAAAATTTTCAAATGTGAATCTTTGAATTTTAGATGTGAATCTCTAAAATTTTTCAAAT
* * * *
9506480 TGAGAATCTTTTAATTTTAAATATG
66 TCA-AAAC-TTGAATTTTAAATGTG
* * * *
9506505 AATCTCTAAAATTTTCTAATGTGAATATTTGAATGTAAGATGTGAATCTCTAAAATTTTTCAAAT
1 AATCTCTAAAATTTTCAAATGTGAATCTTTGAATTTTAGATGTGAATCTCTAAAATTTTTCAAAT
* * * * * *
9506570 AT-GAATCTTTAACTTCATATGTG
66 -TCAAAACTTGAATTTTAAATGTG
*
9506593 AATTTCT-AAATCTATT-AAATGTGAA-CTTTTGAATTTTAGATGTGAATCTCTAAAATTTCTTC
1 AATCTCTAAAAT-T-TTCAAATGTGAATC-TTTGAATTTTAGATGTGAATCTCTAAAATTT-TTC
* *
9506655 AAATGC-AAACTTTGAATTTTAAATGTC
62 AAATTCAAAAC-TTGAATTTTAAATGTG
* * **
9506682 AATCTATAAAATTTTTCAAAAGTGAATCTTTGAATTTTTTATGTGAATCTCT-AAATTTTTCAAA
1 AATCTCTAAAA-TTTTCAAATGTGAATCTTTGAATTTTAGATGTGAATCTCTAAAATTTTTCAAA
*
9506746 TTCAAAACTTGATATTTTAGATGTG
65 TTCAAAACTTGA-ATTTTAAATGTG
* * * *
9506771 AATTTTTGAAAATTTTCAAATGTGAATCTTT-AACTTTA-ATTGTGAATCTTTAAA
1 AATCTCT-AAAATTTTCAAATGTGAATCTTTGAATTTTAGA-TGTGAATCTCTAAA
9506825 TTTAAAATTT
Statistics
Matches: 335, Mismatches: 52, Indels: 44
0.78 0.12 0.10
Matches are distributed among these distances:
87 9 0.03
88 116 0.35
89 169 0.50
90 38 0.11
91 3 0.01
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (88 bp):
AATCTCTAAAATTTTCAAATGTGAATCTTTGAATTTTAGATGTGAATCTCTAAAATTTTTCAAAT
TCAAAACTTGAATTTTAAATGTG
Found at i:9506816 original size:20 final size:20
Alignment explanation
Indices: 9506791--9506829 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9506781 AATTTTCAAA
*
9506791 TGTGAATCTTTAACTTTAAT
1 TGTGAATCTTTAAATTTAAT
9506811 TGTGAATCTTTAAATTTAA
1 TGTGAATCTTTAAATTTAA
9506830 AATTTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (20 bp):
TGTGAATCTTTAAATTTAAT
Found at i:9506854 original size:222 final size:221
Alignment explanation
Indices: 9506327--9506854 Score: 488
Period size: 222 Copynumber: 2.4 Consensus size: 221
9506317 TTTAGATATA
* * * * *
9506327 AATCTCTAAAATTTTTCAAATTTAAAAT-TTTGAATTTCAA-ATGT-AATTCTCTAAAAT-TTTC
1 AATCTCTAAAATTTTTCAAATAT-GAATCTTT-AACTT-AATATGTGAATT-TCT-AAATCTATA
* * * * * *
9506388 AAATATGAATC-TTTGAATTTTAAAAGTGAATCTGTAAAATTTTCAAATGAGAATTTTTGAATTC
61 AAATGTGAA-CATTTCAATTTTAGATGTGAATCTCTAAAATTTTCAAATGAGAATCTTTGAATTC
* * * * * *
9506452 TATATGTGAATTTCTAAAATTTTTCAAATGAGAATCTTTTAATTTTAAATATGAATCTCTAAAAT
125 TAAATGTCAATCTATAAAATTTTTCAAAAGAGAATCTTTGAATTTTAAATATGAATCTCTAAAAT
* * * *
9506517 TTTCTAATGTGAATATTTGAATGTAAGATGTG
190 TTTCAAATGTCAAAACTTGAATGTAAGATGTG
* *
9506549 AATCTCTAAAATTTTTCAAATATGAATCTTTAACTTCATATGTGAATTTCTAAATCTATTAAATG
1 AATCTCTAAAATTTTTCAAATATGAATCTTTAACTTAATATGTGAATTTCTAAATCTATAAAATG
* * *
9506614 TGAACTTTTGAATTTTAGATGTGAATCTCTAAAATTTCTTCAAATGCA-AA-CTTTGAATTTTAA
66 TGAACATTTCAATTTTAGATGTGAATCTCTAAAA-TT-TTCAAATG-AGAATCTTTGAATTCTAA
* ** * *
9506677 ATGTCAATCTATAAAATTTTTCAAAAGTGAATCTTTGAATTTTTTATGTGAATCTCTAAATTTTT
128 ATGTCAATCTATAAAATTTTTCAAAAGAGAATCTTTGAATTTTAAATATGAATCTCTAAAATTTT
* *
9506742 CAAAT-TCAAAACTTGATATTTTAGATGTG
193 CAAATGTCAAAACTTGA-ATGTAAGATGTG
* * *
9506771 AATTTTTGAAAA-TTTTCAAATGTGAATCTTTAACTTTAAT-TGTGAATCTT-TAAAT-T-TAAA
1 AATCTCT-AAAATTTTTCAAATATGAATCTTTAAC-TTAATATGTGAAT-TTCTAAATCTATAAA
* *
9506831 ATTTTGAATCATTTCACTTTTAGA
63 A-TGTGAA-CATTTCAATTTTAGA
9506855 CTTCAGCTCA
Statistics
Matches: 254, Mismatches: 38, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
220 10 0.04
221 63 0.25
222 160 0.63
223 20 0.08
224 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (221 bp):
AATCTCTAAAATTTTTCAAATATGAATCTTTAACTTAATATGTGAATTTCTAAATCTATAAAATG
TGAACATTTCAATTTTAGATGTGAATCTCTAAAATTTTCAAATGAGAATCTTTGAATTCTAAATG
TCAATCTATAAAATTTTTCAAAAGAGAATCTTTGAATTTTAAATATGAATCTCTAAAATTTTCAA
ATGTCAAAACTTGAATGTAAGATGTG
Found at i:9507072 original size:42 final size:41
Alignment explanation
Indices: 9507020--9507112 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 41
9507010 CCCTTTTTTT
* *
9507020 TTTTTAAGTTTCATAA-TCTCTATTTAGAGAAACCTTTTAAA
1 TTTTAAAGTTT-ATAAGTATCTATTTAGAGAAACCTTTTAAA
* * *
9507061 TTTTCAAAGTTTTTAAGTATTTATTTAGAGGAACCTTTTAAA
1 TTTT-AAAGTTTATAAGTATCTATTTAGAGAAACCTTTTAAA
9507103 TTTTAAAGTT
1 TTTTAAAGTT
9507113 ATTGAGTCCC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 13 0.29
42 32 0.71
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (41 bp):
TTTTAAAGTTTATAAGTATCTATTTAGAGAAACCTTTTAAA
Found at i:9507127 original size:41 final size:42
Alignment explanation
Indices: 9507039--9507143 Score: 131
Period size: 41 Copynumber: 2.5 Consensus size: 42
9507029 TTCATAATCT
* * *
9507039 CTATTTAGAGAAACCTTTTAAATTTTCAAAGTTTTTAAGTAT
1 CTATTTAGAGGAACCTTTTAAATTTTCAAAGTTATTAAGTAC
* * *
9507081 TTATTTAGAGGAACCTTTTAAATTTT-AAAGTTATTGAGTCC
1 CTATTTAGAGGAACCTTTTAAATTTTCAAAGTTATTAAGTAC
* *
9507122 CTATTTAAAGGAATCTTTTAAA
1 CTATTTAGAGGAACCTTTTAAA
9507144 AAATATATGT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 30 0.56
42 24 0.44
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (42 bp):
CTATTTAGAGGAACCTTTTAAATTTTCAAAGTTATTAAGTAC
Found at i:9509221 original size:15 final size:15
Alignment explanation
Indices: 9509201--9509229 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9509191 AAACTTTCCA
9509201 ATAAAATAAATTTTT
1 ATAAAATAAATTTTT
9509216 ATAAAATAAATTTT
1 ATAAAATAAATTTT
9509230 AGATTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAAATAAATTTTT
Found at i:9510467 original size:18 final size:16
Alignment explanation
Indices: 9510428--9510468 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
9510418 ATTTTAATTT
9510428 TTAAAAAATTATTTTC
1 TTAAAAAATTATTTTC
9510444 TATAAAAATATTATTTTAC
1 T-TAAAAA-ATTATTTT-C
9510463 TTAAAA
1 TTAAAA
9510469 TCACATCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 1 0.05
17 6 0.27
18 13 0.59
19 2 0.09
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAAAAAATTATTTTC
Found at i:9510578 original size:7 final size:7
Alignment explanation
Indices: 9510560--9510590 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
9510550 ACTTATTTTG
9510560 TTTTAA-
1 TTTTAAT
9510566 TTTTAAT
1 TTTTAAT
9510573 TTTTAAT
1 TTTTAAT
9510580 TTTTAAT
1 TTTTAAT
9510587 TTTT
1 TTTT
9510591 TTTGTTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTAAT
Found at i:9512769 original size:27 final size:27
Alignment explanation
Indices: 9512720--9512773 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
9512710 TATTTGAACA
*
9512720 TTAATATACTCTTATATATATTAGTTTT
1 TTAAAATACTCTTATATATATTA-TTTT
9512748 TTAAAATA-TCTTAT-TATAATTATTTT
1 TTAAAATACTCTTATATAT-ATTATTTT
9512774 GAAATGCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 7 0.29
27 10 0.42
28 7 0.29
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (27 bp):
TTAAAATACTCTTATATATATTATTTT
Found at i:9513234 original size:22 final size:22
Alignment explanation
Indices: 9513204--9513254 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
9513194 ATATTTGTCT
9513204 AAATTTATTTAAAT-ATATTAA
1 AAATTTATTTAAATAATATTAA
*
9513225 AAATTATATTTAAATAATATTTA
1 AAATT-TATTTAAATAATATTAA
9513248 AAATTTA
1 AAATTTA
9513255 AAAATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 11 0.41
23 11 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATTTATTTAAATAATATTAA
Found at i:9513239 original size:11 final size:11
Alignment explanation
Indices: 9513203--9513249 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
9513193 TATATTTGTC
9513203 TAAATT-TATT
1 TAAATTATATT
9513213 TAAA-TATATT
1 TAAATTATATT
*
9513223 AAAAATTATATT
1 -TAAATTATATT
*
9513235 TAAATAATATT
1 TAAATTATATT
9513246 TAAA
1 TAAA
9513250 ATTTAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 1 0.03
10 8 0.26
11 16 0.52
12 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAATTATATT
Found at i:9513342 original size:8 final size:8
Alignment explanation
Indices: 9513329--9513353 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9513319 AATTAGATTA
9513329 AATTTTAT
1 AATTTTAT
9513337 AATTTTAT
1 AATTTTAT
9513345 AATTTTAT
1 AATTTTAT
9513353 A
1 A
9513354 CATTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
AATTTTAT
Found at i:9518455 original size:16 final size:16
Alignment explanation
Indices: 9518431--9518471 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
9518421 AATATCATAT
* *
9518431 ATTCTTGAATGATTAA
1 ATTCATGAATAATTAA
*
9518447 ATTCATGAATAATTAG
1 ATTCATGAATAATTAA
9518463 ATTCATGAA
1 ATTCATGAA
9518472 ATTTGAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (16 bp):
ATTCATGAATAATTAA
Found at i:9518636 original size:16 final size:16
Alignment explanation
Indices: 9518601--9518654 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
9518591 ATAGAGATTA
* * *
9518601 TAAATTCATGAATGAC
1 TAAATTCATAAATAAT
**
9518617 TAAATTCATTGATAAT
1 TAAATTCATAAATAAT
9518633 TAAATTCATAAATAAT
1 TAAATTCATAAATAAT
9518649 TAAATT
1 TAAATT
9518655 TATGTAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (16 bp):
TAAATTCATAAATAAT
Found at i:9519055 original size:22 final size:22
Alignment explanation
Indices: 9519025--9519084 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
9519015 CAAACGTTAA
9519025 AAACCCTCCAATCTCAAAACGT
1 AAACCCTCCAATCTCAAAACGT
* * * *
9519047 AAACTCTCCAATCTTAAGACTT
1 AAACCCTCCAATCTCAAAACGT
9519069 AAACCCTCCAATCTCA
1 AAACCCTCCAATCTCA
9519085 TGCTACTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.35, G:0.03, T:0.23
Consensus pattern (22 bp):
AAACCCTCCAATCTCAAAACGT
Found at i:9526092 original size:7 final size:7
Alignment explanation
Indices: 9526080--9526126 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
9526070 TCATATATAT
9526080 AAATTAA
1 AAATTAA
9526087 AAATT-A
1 AAATTAA
*
9526093 AAATTAT
1 AAATTAA
*
9526100 ATATGTAA
1 AAAT-TAA
9526108 AAATTAA
1 AAATTAA
9526115 AAA-TAA
1 AAATTAA
9526121 AAATTA
1 AAATTA
9526127 TATAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 12 0.36
7 16 0.48
8 5 0.15
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (7 bp):
AAATTAA
Found at i:9526100 original size:24 final size:24
Alignment explanation
Indices: 9526073--9526144 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 24
9526063 ATTTAGTTCA
9526073 TATATATAAATTAAAAATTAAAAT
1 TATATATAAATTAAAAATTAAAAT
*
9526097 TATATATGTAAAAATTAAAAATAAAAAT
1 TATATA--T--AAATTAAAAATTAAAAT
* *
9526125 TATATA-AAAATAAAAGTTAA
1 TATATATAAATTAAAAATTAA
9526145 GTTTAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
23 11 0.28
24 6 0.15
26 1 0.03
28 22 0.55
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (24 bp):
TATATATAAATTAAAAATTAAAAT
Found at i:9529771 original size:35 final size:35
Alignment explanation
Indices: 9529732--9529826 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
9529722 TCAAAAATGT
** *
9529732 ATTTTCGGATAATTACAATGTTTTTTTGAAAATAC
1 ATTTTCGGATAATTACAATGTTTTTCCGAAAATAA
* * *
9529767 ATTTTAGGATAATTGCAATG-CTTTCCGAAAATAA
1 ATTTTCGGATAATTACAATGTTTTTCCGAAAATAA
*
9529801 ATTTTC-GATATAGTTAAAATGTTTTT
1 ATTTTCGGATA-A-TTACAATGTTTTT
9529827 AGAAATGCAA
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
33 4 0.09
34 16 0.34
35 24 0.51
36 3 0.06
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (35 bp):
ATTTTCGGATAATTACAATGTTTTTCCGAAAATAA
Found at i:9530832 original size:17 final size:18
Alignment explanation
Indices: 9530778--9530832 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
9530768 TTTCCCTATT
*
9530778 CTTTTCTATTTA-TTC-C
1 CTTTTCTTTTTACTTCTC
*
9530794 CTTTTCTTTTTACTTCTT
1 CTTTTCTTTTTACTTCTC
9530812 CTTTT-TTGTTT-CTTCTC
1 CTTTTCTT-TTTACTTCTC
9530829 CTTT
1 CTTT
9530833 AATTAAGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
16 11 0.33
17 14 0.42
18 8 0.24
ACGTcount: A:0.05, C:0.24, G:0.02, T:0.69
Consensus pattern (18 bp):
CTTTTCTTTTTACTTCTC
Found at i:9536283 original size:15 final size:15
Alignment explanation
Indices: 9536263--9536296 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9536253 TTTTCAATAA
*
9536263 AATATATCATAAAAT
1 AATATATAATAAAAT
*
9536278 AATATATAATACAAT
1 AATATATAATAAAAT
9536293 AATA
1 AATA
9536297 ACCTTTACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
AATATATAATAAAAT
Found at i:9541575 original size:13 final size:13
Alignment explanation
Indices: 9541557--9541603 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
9541547 CTGACCTCCC
*
9541557 CTTCCTTCTGTCT
1 CTTCCTTCTCTCT
9541570 CTTCCTT-TCCTCT
1 CTTCCTTCT-CTCT
9541583 CTTTCCTTTCTCTCT
1 C-TTCC-TTCTCTCT
9541598 CTTCCT
1 CTTCCT
9541604 ATTCTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
12 1 0.03
13 12 0.41
14 8 0.28
15 7 0.24
16 1 0.03
ACGTcount: A:0.00, C:0.43, G:0.02, T:0.55
Consensus pattern (13 bp):
CTTCCTTCTCTCT
Found at i:9545058 original size:22 final size:22
Alignment explanation
Indices: 9545033--9545076 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9545023 AGATCTGAAT
9545033 TTGGGAGTACTTGATACTCATC
1 TTGGGAGTACTTGATACTCATC
9545055 TTGGGAGTACTTGATACTCATC
1 TTGGGAGTACTTGATACTCATC
9545077 ATCAACATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (22 bp):
TTGGGAGTACTTGATACTCATC
Found at i:9559333 original size:26 final size:25
Alignment explanation
Indices: 9559282--9559343 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 25
9559272 TTTTATTATG
*
9559282 AATTTAATATATTGGTTTCATTTTTT
1 AATTTAA-ATATTGGTTTCATATTTT
**
9559308 AATTTAAATATTTTTTTCATAATTTT
1 AATTTAAATATTGGTTTCAT-ATTTT
9559334 ATATTATAAA
1 A-ATT-TAAA
9559344 AATAAATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 11 0.37
26 12 0.40
27 3 0.10
28 4 0.13
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (25 bp):
AATTTAAATATTGGTTTCATATTTT
Found at i:9561091 original size:20 final size:21
Alignment explanation
Indices: 9561048--9561092 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
9561038 AAAATTACCC
*
9561048 AAAACTACAATTTTCAAATTA
1 AAAACTACAATTTTCAAATGA
**
9561069 AAAACT-CAATTTTTTAATGA
1 AAAACTACAATTTTCAAATGA
9561089 AAAA
1 AAAA
9561093 AAATTATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAACTACAATTTTCAAATGA
Found at i:9561357 original size:54 final size:53
Alignment explanation
Indices: 9561184--9561489 Score: 173
Period size: 54 Copynumber: 5.7 Consensus size: 53
9561174 AAAAAAATAT
* * * * * *
9561184 AAATGTAGTTTTTAATTG-AAAAAAATTACAAATATTATATTTTTATAAGTAG
1 AAATGTAGTCTTTAATTGAAAAAAAATTACAAAGACTACATTTTTAAAAGTAA
* * **** * * * * * *
9561236 AAATGTAGTATTTGATTAGAAAATTTTTTTGCAAAGACAACGTTTCTAAATGTAT
1 AAATGTAGTCTTTAATT-GAAAA-AAAATTACAAAGACTACATTTTTAAAAGTAA
* * ** *
9561291 AAACGTAATCTTTAATTGAAAAAAAATTACCAAAGACTACATTTTTCCAATTAA
1 AAATGTAGTCTTTAATTGAAAAAAAATTA-CAAAGACTACATTTTTAAAAGTAA
* * * ** * *
9561345 AAATGTAGTCTTTTATGGAAAAAAAAATTACAAATACTATGTTTTTATAAGTAG
1 AAATGTAGTCTTTAATTG-AAAAAAAATTACAAAGACTACATTTTTAAAAGTAA
* * ** * * * * *
9561399 AAATGTATTCTTTGATTGGAAAAAAGTTTTACAAAAATTACACTTTTGAAAGTAT
1 AAATGTAGTCTTTAATT-GAAAAAA-AATTACAAAGACTACATTTTTAAAAGTAA
* *
9561454 AAATGTAGTTTTTAATTGAAAAAAATTTATCAAAGA
1 AAATGTAGTCTTTAATTGAAAAAAAATTA-CAAAGA
9561490 TTATGTTTCC
Statistics
Matches: 184, Mismatches: 62, Indels: 14
0.71 0.24 0.05
Matches are distributed among these distances:
52 15 0.08
53 7 0.04
54 87 0.47
55 75 0.41
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (53 bp):
AAATGTAGTCTTTAATTGAAAAAAAATTACAAAGACTACATTTTTAAAAGTAA
Found at i:9561419 original size:55 final size:55
Alignment explanation
Indices: 9561202--9561478 Score: 161
Period size: 55 Copynumber: 5.1 Consensus size: 55
9561192 TTTTTAATTG
* * * * *
9561202 AAAAAAATTACAAATATTATATTTTTATAAGTAGAAATGTAGTATTTGATTAGAA
1 AAAAAAATTACAAAGACTACATTTTTATAAGTAGAAATGTAGTCTTTGATTGGAA
***** * * * * * * * *
9561257 AATTTTTTTGCAAAGACAACGTTTCTA-AATGTATAAACGTAATCTTTAATT-G-A
1 AAAAAAATTACAAAGACTACATTTTTATAA-GTAGAAATGTAGTCTTTGATTGGAA
** * * *
9561310 AAAAAAATTACCAAAGACTACATTTTTCCAATTAAAAATGTAGTCTTTTA-TGGAA
1 AAAAAAATTA-CAAAGACTACATTTTTATAAGTAGAAATGTAGTCTTTGATTGGAA
* ** *
9561365 AAAAAAATTACAAATACTATGTTTTTATAAGTAGAAATGTATTCTTTGATTGGAA
1 AAAAAAATTACAAAGACTACATTTTTATAAGTAGAAATGTAGTCTTTGATTGGAA
*** * * * * * *
9561420 AAAAGTTTTACAAAAATTACACTTTTGA-AAGTATAAATGTAGTTTTTAATT-GAA
1 AAAAAAATTACAAAGACTACA-TTTTTATAAGTAGAAATGTAGTCTTTGATTGGAA
9561474 AAAAA
1 AAAAA
9561479 TTTATCAAAG
Statistics
Matches: 161, Mismatches: 54, Indels: 15
0.70 0.23 0.07
Matches are distributed among these distances:
53 6 0.04
54 68 0.42
55 82 0.51
56 5 0.03
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (55 bp):
AAAAAAATTACAAAGACTACATTTTTATAAGTAGAAATGTAGTCTTTGATTGGAA
Found at i:9561694 original size:27 final size:27
Alignment explanation
Indices: 9561653--9561728 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
9561643 ACATTCGGTA
*
9561653 ATGAATTGGATGCAAAATCAACAAATT
1 ATGAATTGGAGGCAAAATCAACAAATT
**
9561680 ATGAATTGGAGGCAAAATCAATGAATT
1 ATGAATTGGAGGCAAAATCAACAAATT
**
9561707 ACTGAATTAAAGGCACAAATCA
1 A-TGAATTGGAGGCA-AAATCA
9561729 CTCAGCATCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 25 0.60
28 11 0.26
29 6 0.14
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.24
Consensus pattern (27 bp):
ATGAATTGGAGGCAAAATCAACAAATT
Found at i:9562421 original size:140 final size:140
Alignment explanation
Indices: 9562169--9562444 Score: 482
Period size: 140 Copynumber: 2.0 Consensus size: 140
9562159 AATATTGGTG
* * *
9562169 TACATGTGGTTAGTTTATGTATTCATTAAAATATATAGATGTATACATAACCTAACATTCATATA
1 TACATGAGGTTAGTTTATGTATTAATTAAAATATATAGATGTATACATAACCTAACATTCATAAA
*
9562234 TAGTGTATATTGGTATTATAATTGATTTGTATTTATCATGTAACTTCTTTTACAAATGTGTGAAG
66 TAGTGTATATTGGTATTATAATTGATTTGTATTTATCATGTAACTTCTTTTACAAATGTGTAAAG
9562299 AAGAGACAAA
131 AAGAGACAAA
*
9562309 TACATGAGGTTAGTTTATGTATTAATGT-AAATATATATATGTATACATAACCTAACATTCATAA
1 TACATGAGGTTAGTTTATGTATTAAT-TAAAATATATAGATGTATACATAACCTAACATTCATAA
9562373 ATAGTGTATATTGGTATTATAATTGATTTGTATTTATCATGTAACTTCTTTTACAAATGTGTAAA
65 ATAGTGTATATTGGTATTATAATTGATTTGTATTTATCATGTAACTTCTTTTACAAATGTGTAAA
*
9562438 GGAGAGA
130 GAAGAGA
9562445 TAGATGACTG
Statistics
Matches: 129, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
140 128 0.99
141 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (140 bp):
TACATGAGGTTAGTTTATGTATTAATTAAAATATATAGATGTATACATAACCTAACATTCATAAA
TAGTGTATATTGGTATTATAATTGATTTGTATTTATCATGTAACTTCTTTTACAAATGTGTAAAG
AAGAGACAAA
Found at i:9562481 original size:140 final size:140
Alignment explanation
Indices: 9562197--9562487 Score: 399
Period size: 140 Copynumber: 2.1 Consensus size: 140
9562187 GTATTCATTA
* *
9562197 AAATATATAGATGTATACATAACCTAACATTCATATATAGTGTATATTGGTATTATAATTGATTT
1 AAATATATATATGTATACATAACCTAACATTCATAAATAGTGTATATTGGTATTATAATTGATTT
* ** **
9562262 GTATTTATCATGTAACTTCTTTTACAAATGTGTGAAGAAGAGACAAATACATGAGGTTAGTTTAT
66 GTATTTATCATGTAACTTCTTTTACAAATGTGTAAAGAAGAGACAAATACATGAGCCTAGTAGAT
***
9562327 GTATTAATGT
131 GTATTAACCC
9562337 AAATATATATATGTATACATAACCTAACATTCATAAATAGTGTATATTGGTATTATAATTGATTT
1 AAATATATATATGTATACATAACCTAACATTCATAAATAGTGTATATTGGTATTATAATTGATTT
* * *
9562402 GTATTTATCATGTAACTTCTTTTACAAATGTGTAAAGGAGAGATAGATGAC-TGATGCCTA-TAG
66 GTATTTATCATGTAACTTCTTTTACAAATGTGTAAAGAAGAGACAAAT-ACATGA-GCCTAGTAG
*
9562465 AT-TCATTGACCC
129 ATGT-ATTAACCC
9562477 AAATAGTATAT
1 AAATA-TATAT
9562488 TAAATGGTAT
Statistics
Matches: 133, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
139 1 0.01
140 122 0.92
141 10 0.08
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.39
Consensus pattern (140 bp):
AAATATATATATGTATACATAACCTAACATTCATAAATAGTGTATATTGGTATTATAATTGATTT
GTATTTATCATGTAACTTCTTTTACAAATGTGTAAAGAAGAGACAAATACATGAGCCTAGTAGAT
GTATTAACCC
Found at i:9564951 original size:21 final size:22
Alignment explanation
Indices: 9564916--9564957 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
9564906 GGTATTTTTT
*
9564916 TATTTTATTTTTATTTATTTAAC
1 TATTTTA-TTTTATTCATTTAAC
9564939 TATTTTA-TTTATTCATTTA
1 TATTTTATTTTATTCATTTA
9564958 TTTGATTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (22 bp):
TATTTTATTTTATTCATTTAAC
Found at i:9565010 original size:16 final size:16
Alignment explanation
Indices: 9564979--9565012 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9564969 ATTATTCTTT
**
9564979 AAATATATTTTTATAA
1 AAATATATTTAAATAA
9564995 AAATATATTTAAATAA
1 AAATATATTTAAATAA
9565011 AA
1 AA
9565013 GCCTTACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATATATTTAAATAA
Found at i:9565163 original size:96 final size:94
Alignment explanation
Indices: 9565000--9565185 Score: 234
Period size: 96 Copynumber: 2.0 Consensus size: 94
9564990 TATAAAAATA
* *
9565000 TATTTAAATAAAAGCCTTACAATAGATTGGAAGGCAATCATTTTTTTAAAAAATAGGGTTTTACC
1 TATTTAAATAAAAGCCTTACAACAGATTGGAAGGCAATCATTTTTTTAAAAAATAAGGTTTTACC
*
9565065 AACATATT-AAGAAACTTTATAATTTTTTT
66 AACATATTGAA-AAACCTTATAATTTTTTT
* * **
9565094 TATTTATAA-AAAAGCCTTACCAACATATTGGAGGGCCAAT-ATTTTATTTTCAAAATAAGGTTT
1 TATTTA-AATAAAAGCCTTA-CAACAGATTGGAAGG-CAATCATTTT-TTTAAAAAATAAGGTTT
*
9565157 TACCAACATATTGAAAAGCCTTATAATTT
62 TACCAACATATTGAAAAACCTTATAATTT
9565186 CCTAAAAACT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
94 16 0.20
95 19 0.24
96 42 0.53
97 2 0.03
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.38
Consensus pattern (94 bp):
TATTTAAATAAAAGCCTTACAACAGATTGGAAGGCAATCATTTTTTTAAAAAATAAGGTTTTACC
AACATATTGAAAAACCTTATAATTTTTTT
Found at i:9570169 original size:46 final size:46
Alignment explanation
Indices: 9570119--9570221 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 46
9570109 CTTTGAAACC
*
9570119 TTGGATGTGAA-TCTCTAAAATTTTTTGAATGAAAATCTTT-AAAAAT
1 TTGGATGTGAATTC-CTAAAATTTTTTAAATGAAAAT-TTTCAAAAAT
* ** *
9570165 TTGGATGGGAATTCCTAAAATTTTTTAAATGTGAATTTTCAAAATT
1 TTGGATGTGAATTCCTAAAATTTTTTAAATGAAAATTTTCAAAAAT
9570211 TTGGATGTGAA
1 TTGGATGTGAA
9570222 ACCTTGAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.06
46 44 0.90
47 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (46 bp):
TTGGATGTGAATTCCTAAAATTTTTTAAATGAAAATTTTCAAAAAT
Found at i:9570481 original size:17 final size:17
Alignment explanation
Indices: 9570459--9570493 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
9570449 TTTACAAATT
*
9570459 TTAAATTCTTGCGAATC
1 TTAAATTCTTGAGAATC
9570476 TTAAATTCTTGAGAATC
1 TTAAATTCTTGAGAATC
9570493 T
1 T
9570494 GAAGATCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
TTAAATTCTTGAGAATC
Found at i:9570502 original size:17 final size:17
Alignment explanation
Indices: 9570464--9570541 Score: 77
Period size: 17 Copynumber: 4.6 Consensus size: 17
9570454 AAATTTTAAA
* * *
9570464 TTCTTGCGAATCTTAAA
1 TTCTTGAGAATCTGAAG
9570481 TTCTTGAGAATCTGAAG
1 TTCTTGAGAATCTGAAG
* * * *
9570498 ATCTTGTGAACCTGCAG
1 TTCTTGAGAATCTGAAG
9570515 TTCTTGCA-AATCTGAAG
1 TTCTTG-AGAATCTGAAG
9570532 TTCTTGAGAA
1 TTCTTGAGAA
9570542 ACTTAGATCC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
16 1 0.02
17 47 0.98
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (17 bp):
TTCTTGAGAATCTGAAG
Found at i:9570603 original size:18 final size:18
Alignment explanation
Indices: 9570580--9570616 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9570570 TTACAAATAT
9570580 AAATTCTTATGAATTTGA
1 AAATTCTTATGAATTTGA
*
9570598 AAATTCTTGTGAATTTGA
1 AAATTCTTATGAATTTGA
9570616 A
1 A
9570617 TTCTTGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (18 bp):
AAATTCTTATGAATTTGA
Found at i:9570686 original size:35 final size:34
Alignment explanation
Indices: 9570638--9570706 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 34
9570628 CGTTGGATTC
*
9570638 ATGTGAAAATGAAA-TTCTTGTGAATTTAGAACCT
1 ATGTGAAAATGAAACTT-TTGAGAATTTAGAACCT
*
9570672 ATGTGAAACTTGAAACTTTTGAGAATTTAGAACCT
1 ATGTGAAA-ATGAAACTTTTGAGAATTTAGAACCT
9570707 CTAAAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 8 0.26
35 21 0.68
36 2 0.06
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (34 bp):
ATGTGAAAATGAAACTTTTGAGAATTTAGAACCT
Found at i:9570750 original size:52 final size:52
Alignment explanation
Indices: 9570682--9570800 Score: 134
Period size: 52 Copynumber: 2.3 Consensus size: 52
9570672 ATGTGAAACT
* * * *
9570682 TGAAACTTTTGAGAATTTAGAACCTCTAA-AAATTTGAAAAATC-TTGCGAATC
1 TGAAACCTTTGTGAATTTAGAACCTCTAAGAAACTTG--AAATCTTTACGAATC
* * *
9570734 TGAAACCTTTGTGAATTTGGAATCTTTAAGAAACTTGAAATCTTTACGAATC
1 TGAAACCTTTGTGAATTTAGAACCTCTAAGAAACTTGAAATCTTTACGAATC
*
9570786 TGGAACCTTTGTGAA
1 TGAAACCTTTGTGAA
9570801 ACTTGAAATC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
51 5 0.09
52 46 0.81
53 6 0.11
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (52 bp):
TGAAACCTTTGTGAATTTAGAACCTCTAAGAAACTTGAAATCTTTACGAATC
Found at i:9570773 original size:35 final size:35
Alignment explanation
Indices: 9570734--9570826 Score: 123
Period size: 35 Copynumber: 2.7 Consensus size: 35
9570724 CTTGCGAATC
* * *
9570734 TGAAACCTTTGTGAATTTGGAATCTTTAAGAAACT
1 TGAAATCTTTGTGAATCTGGAACCTTTAAGAAACT
** **
9570769 TGAAATCTTTACGAATCTGGAACCTTTGTGAAACT
1 TGAAATCTTTGTGAATCTGGAACCTTTAAGAAACT
9570804 TGAAATCTTTGTGAATCTGGAAC
1 TGAAATCTTTGTGAATCTGGAAC
9570827 ATCTGAGAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (35 bp):
TGAAATCTTTGTGAATCTGGAACCTTTAAGAAACT
Found at i:9570815 original size:18 final size:18
Alignment explanation
Indices: 9570734--9570818 Score: 66
Period size: 18 Copynumber: 4.8 Consensus size: 18
9570724 CTTGCGAATC
* *
9570734 TGAAACCTTTGTG-AATT
1 TGAAATCTTTGTGAAACT
* **
9570751 TGGAATCTTTAAGAAACT
1 TGAAATCTTTGTGAAACT
** *
9570769 TGAAATCTTTACGAATC-
1 TGAAATCTTTGTGAAACT
* *
9570786 TGGAACCTTTGTGAAACT
1 TGAAATCTTTGTGAAACT
9570804 TGAAATCTTTGTGAA
1 TGAAATCTTTGTGAA
9570819 TCTGGAACAT
Statistics
Matches: 51, Mismatches: 15, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
17 21 0.41
18 30 0.59
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (18 bp):
TGAAATCTTTGTGAAACT
Found at i:9570841 original size:35 final size:34
Alignment explanation
Indices: 9570734--9570842 Score: 119
Period size: 35 Copynumber: 3.1 Consensus size: 34
9570724 CTTGCGAATC
* * *
9570734 TGAAACCTTTGTGAATTTGGAATCTTTAAGAAACT
1 TGAAATCTTTGTGAATCTGGAA-CTTTGAGAAACT
** *
9570769 TGAAATCTTTACGAATCTGGAACCTTTGTGAAACT
1 TGAAATCTTTGTGAATCTGGAA-CTTTGAGAAACT
* *
9570804 TGAAATCTTTGTGAATCTGGAACATCTGAGAATCT
1 TGAAATCTTTGTGAATCTGGAAC-TTTGAGAAACT
9570839 TGAA
1 TGAA
9570843 TCATTTAAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 1 0.02
35 60 0.98
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (34 bp):
TGAAATCTTTGTGAATCTGGAACTTTGAGAAACT
Found at i:9572054 original size:1 final size:1
Alignment explanation
Indices: 9572048--9572075 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
9572038 TAGTAGTAGG
9572048 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
9572076 CAGAATTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9572633 original size:22 final size:22
Alignment explanation
Indices: 9572595--9572642 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
9572585 TGACAAATAG
* *
9572595 TATTCTTAAATACTTACGAAAA
1 TATTATTAAATACTTACCAAAA
*
9572617 TATTATTAAATTA-TTACCAACA
1 TATTATTAAA-TACTTACCAAAA
9572639 TATT
1 TATT
9572643 GGAGTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (22 bp):
TATTATTAAATACTTACCAAAA
Found at i:9575286 original size:26 final size:27
Alignment explanation
Indices: 9575244--9575305 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
9575234 CAAGTTTCAC
** *
9575244 TTAAGGTTTTGGTTTTAAGGTTGC-AT
1 TTAAGGTTTTGACTTTAAGGTTCCAAT
*
9575270 TTAAGGTTTTGACTTTAGGGTTCCAAT
1 TTAAGGTTTTGACTTTAAGGTTCCAAT
*
9575297 TTAGGGTTT
1 TTAAGGTTT
9575306 CGATTTGGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.19, C:0.06, G:0.26, T:0.48
Consensus pattern (27 bp):
TTAAGGTTTTGACTTTAAGGTTCCAAT
Found at i:9575324 original size:13 final size:13
Alignment explanation
Indices: 9575283--9575349 Score: 59
Period size: 13 Copynumber: 5.3 Consensus size: 13
9575273 AGGTTTTGAC
*
9575283 TTTAGGGTTCCAA
1 TTTAGGGTTTCAA
*
9575296 TTTAGGGTTTCGA
1 TTTAGGGTTTCAA
* *
9575309 TTTGGGGTTTTAA
1 TTTAGGGTTTCAA
*
9575322 TTTATGG-TT-AA
1 TTTAGGGTTTCAA
9575333 TCTTA-GGTTTCAA
1 T-TTAGGGTTTCAA
9575346 TTTA
1 TTTA
9575350 AGATTTAGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
11 5 0.11
12 10 0.23
13 29 0.66
ACGTcount: A:0.21, C:0.07, G:0.22, T:0.49
Consensus pattern (13 bp):
TTTAGGGTTTCAA
Found at i:9576096 original size:29 final size:28
Alignment explanation
Indices: 9576037--9576106 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
9576027 TACTTTACTT
*
9576037 TTTAAAAATT-TTTTATTATTATTATAA
1 TTTAATAATTCTTTTATTATTATTATAA
* * *
9576064 TTTATTAA-TCTTTTATTATTTTTTTACTA
1 TTTAATAATTCTTTTATTATTATTATA--A
9576093 TTTAATAATTCTTT
1 TTTAATAATTCTTT
9576107 AATATCTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
26 1 0.03
27 20 0.59
29 8 0.24
30 5 0.15
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTAATAATTCTTTTATTATTATTATAA
Found at i:9576259 original size:86 final size:88
Alignment explanation
Indices: 9576161--9576336 Score: 302
Period size: 90 Copynumber: 2.0 Consensus size: 88
9576151 ATTCCTTCCC
9576161 ACATTTAGGTAGGAA-TTT-TTTATTATTGTTTAATATACAATAAAGACATTATTATCATTAAAA
1 ACATTTAGGTAGGAATTTTATTTATTATTGTTTAATATACAATAAAGACATTATTATCATTAAAA
9576224 AATTTTATTTGTTTTATTATTAT
66 AATTTTATTTGTTTTATTATTAT
*
9576247 ACATTTAGGTAGGAATTTTAAATTTATTATTGTTTTATATACAATAAAGACATTATTATCATTAA
1 ACATTTAGGTAGGAATTTT--ATTTATTATTGTTTAATATACAATAAAGACATTATTATCATTAA
*
9576312 CAAATTTTATTTGTTTTATTATTAT
64 AAAATTTTATTTGTTTTATTATTAT
9576337 TTTTTAAACT
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
86 15 0.18
87 3 0.04
90 66 0.79
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (88 bp):
ACATTTAGGTAGGAATTTTATTTATTATTGTTTAATATACAATAAAGACATTATTATCATTAAAA
AATTTTATTTGTTTTATTATTAT
Found at i:9576328 original size:46 final size:46
Alignment explanation
Indices: 9576186--9576330 Score: 122
Period size: 46 Copynumber: 3.2 Consensus size: 46
9576176 TTTTTTATTA
*
9576186 TTGTTTAATATACAATAAAGACATTATTATCATTAAAAAATTTTAT
1 TTGTTTTATATACAATAAAGACATTATTATCATTAAAAAATTTTAT
* * * ** ** *
9576232 TTGTTTTAT-T---AT-TATACATTTAGGTAGGAATTTTAAATTTATTA-
1 TTGTTTTATATACAATAAAGACA-TTA-TTA-TCATTAAAAAATT-TTAT
*
9576276 TTGTTTTATATACAATAAAGACATTATTATCATTAACAAATTTTAT
1 TTGTTTTATATACAATAAAGACATTATTATCATTAAAAAATTTTAT
9576322 TTGTTTTAT
1 TTGTTTTAT
9576331 TATTATTTTT
Statistics
Matches: 71, Mismatches: 18, Indels: 20
0.65 0.17 0.18
Matches are distributed among these distances:
41 4 0.06
42 5 0.07
43 2 0.03
44 17 0.24
45 8 0.11
46 24 0.34
47 2 0.03
48 5 0.07
49 4 0.06
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.50
Consensus pattern (46 bp):
TTGTTTTATATACAATAAAGACATTATTATCATTAAAAAATTTTAT
Found at i:9576751 original size:1 final size:1
Alignment explanation
Indices: 9576745--9576778 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
9576735 GGTCATACAC
* *
9576745 AAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9576779 GGAGACGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:9576935 original size:12 final size:12
Alignment explanation
Indices: 9576918--9576948 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
9576908 AAATCTCACC
9576918 AAAAAGAAAAAA
1 AAAAAGAAAAAA
*
9576930 AAAAAGAAAAAC
1 AAAAAGAAAAAA
9576942 AAAAAGA
1 AAAAAGA
9576949 GCGGTACAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAA
Found at i:9577855 original size:16 final size:15
Alignment explanation
Indices: 9577836--9577869 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
9577826 AAAATTTTTA
9577836 ATTTTTAATATTTAAT
1 ATTTTTAATA-TTAAT
9577852 ATTTTTAATATTAAT
1 ATTTTTAATATTAAT
9577867 ATT
1 ATT
9577870 GGCACTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTTAATATTAAT
Found at i:9578188 original size:11 final size:10
Alignment explanation
Indices: 9578172--9578205 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
9578162 TTAAGGCAAA
9578172 TTTTTTGTTGT
1 TTTTTTGTT-T
9578183 TTTTTTGTTT
1 TTTTTTGTTT
*
9578193 TTTTTGGTTT
1 TTTTTTGTTT
9578203 TTT
1 TTT
9578206 CATTCTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:9578224 original size:19 final size:18
Alignment explanation
Indices: 9578171--9578238 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
9578161 CTTAAGGCAA
*
9578171 ATTTTTTGTTGTTTTTTT-
1 ATTTTTT-TAGTTTTTTTC
* * *
9578189 GTTTTTTTTGGTTTTTTC
1 ATTTTTTTAGTTTTTTTC
*
9578207 ATTCTTTTTAGTTATTTTTG
1 ATT-TTTTTAGTT-TTTTTC
9578227 ATTTTTTTAGTT
1 ATTTTTTTAGTT
9578239 GAAAAATTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
17 9 0.22
18 8 0.20
19 16 0.39
20 8 0.20
ACGTcount: A:0.09, C:0.03, G:0.12, T:0.76
Consensus pattern (18 bp):
ATTTTTTTAGTTTTTTTC
Found at i:9578224 original size:20 final size:19
Alignment explanation
Indices: 9578201--9578238 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
9578191 TTTTTTTGGT
9578201 TTTTTCATTCTTTTTAGTTA
1 TTTTTCATT-TTTTTAGTTA
*
9578221 TTTTTGATTTTTTTAGTT
1 TTTTTCATTTTTTTAGTT
9578239 GAAAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (19 bp):
TTTTTCATTTTTTTAGTTA
Found at i:9578364 original size:35 final size:35
Alignment explanation
Indices: 9578279--9578373 Score: 50
Period size: 35 Copynumber: 2.7 Consensus size: 35
9578269 GAATTGATAC
* * * *
9578279 ACAAGTTAAAAAGTAAAGATGATTGGGACGAAA-T
1 ACAAGTCAAAAAATAAAGATGACTGGGATGAAACT
** ** * *
9578313 CACAAGTTGAGGAATAAAGATGATTGGGATGAAATT
1 -ACAAGTCAAAAAATAAAGATGACTGGGATGAAACT
** *
9578349 GTAAGTCAAAAAAT-AAGATAACTGG
1 ACAAGTCAAAAAATAAAGATGACTGG
9578374 AACAAAATCG
Statistics
Matches: 46, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
34 9 0.20
35 36 0.78
36 1 0.02
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.22
Consensus pattern (35 bp):
ACAAGTCAAAAAATAAAGATGACTGGGATGAAACT
Found at i:9578486 original size:35 final size:34
Alignment explanation
Indices: 9578410--9578577 Score: 131
Period size: 34 Copynumber: 4.9 Consensus size: 34
9578400 GATAACTATA
* **
9578410 ATGAAACCACAAGTCGAGGAATAAAGATGA-CGGG
1 ATGAAACTACAAGTC-AAAAATAAAGATGACCGGG
*
9578444 ATGAAACTACAAGTCAAAAAATAAAGTTGACCGGG
1 ATGAAACTACAAGTC-AAAAATAAAGATGACCGGG
* **
9578479 ATGAAACTATAAGTCAAAAATAAAGATGACTAGG
1 ATGAAACTACAAGTCAAAAATAAAGATGACCGGG
* * * * * **
9578513 ACGAAACTGCAAGTGAATGAGTAAAGATGATTGGG
1 ATGAAACTACAAGTCAA-AAATAAAGATGACCGGG
* * * *
9578548 ATGAAGCCACATGTCTGAAAATAAAGATGA
1 ATGAAACTACAAGTC-AAAAATAAAGATGA
9578578 ATGTGACAAA
Statistics
Matches: 105, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
34 54 0.51
35 50 0.48
36 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.18
Consensus pattern (34 bp):
ATGAAACTACAAGTCAAAAATAAAGATGACCGGG
Found at i:9578608 original size:70 final size:70
Alignment explanation
Indices: 9578534--9578692 Score: 160
Period size: 70 Copynumber: 2.3 Consensus size: 70
9578524 AGTGAATGAG
* * *
9578534 TAAAGATGATTGGGATGAAGCCACATGTCT-GAAAATAAAGATGAAT-GTGACAAAATCGTAAGT
1 TAAAGATGATTGGGATGAAGCCACAAGT-TAGAAAATAAAGATGAATAG-GACAAAATAGTAAAT
9578597 TAAGGAA
64 TAAGGAA
* * ** * * **
9578604 TAAAGATAATCGAAATGAAGCCACAAGTTAGAAACTAAATATGAATAGGATGAAATAGTAAATTA
1 TAAAGATGATTGGGATGAAGCCACAAGTTAGAAAATAAAGATGAATAGGACAAAATAGTAAATTA
*
9578669 GGGAA
66 AGGAA
* *
9578674 TAAAAATGATTAGGATGAA
1 TAAAGATGATTGGGATGAA
9578693 ATTGTAAGTT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
69 1 0.01
70 67 0.97
71 1 0.01
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.23
Consensus pattern (70 bp):
TAAAGATGATTGGGATGAAGCCACAAGTTAGAAAATAAAGATGAATAGGACAAAATAGTAAATTA
AGGAA
Found at i:9578688 original size:35 final size:35
Alignment explanation
Indices: 9578639--9578722 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
9578629 AGTTAGAAAC
* * **
9578639 TAAATATGAATAGGATGAAATAGTAAATTAGGGAA
1 TAAAAATGATTAGGATGAAATAGTAAATTAAAGAA
* *
9578674 TAAAAATGATTAGGATGAAATTGTAAGTTAAAGAA
1 TAAAAATGATTAGGATGAAATAGTAAATTAAAGAA
9578709 T-AAAATGATTAGGA
1 TAAAAATGATTAGGA
9578723 CAAAACTGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 13 0.30
35 30 0.70
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.27
Consensus pattern (35 bp):
TAAAAATGATTAGGATGAAATAGTAAATTAAAGAA
Found at i:9578744 original size:34 final size:34
Alignment explanation
Indices: 9578670--9578785 Score: 90
Period size: 34 Copynumber: 3.4 Consensus size: 34
9578660 AGTAAATTAG
** * * *
9578670 GGAATAAAAATGATTAGGATGAAATTGTAAGTTAA
1 GGAAT-AAAATGATTAGGACAAAACTGCAAGTCAA
* *
9578705 AGAATAAAATGATTAGGACAAAACTGCAGGTCAA
1 GGAATAAAATGATTAGGACAAAACTGCAAGTCAA
* * ** *
9578739 GGAATAAAGATGATCAAGACAAAACCACAA-TCAG
1 GGAATAAA-ATGATTAGGACAAAACTGCAAGTCAA
9578773 GGAATAAAGATGA
1 GGAATAAA-ATGA
9578786 CTGGAACCTA
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
34 46 0.70
35 20 0.30
ACGTcount: A:0.51, C:0.09, G:0.22, T:0.19
Consensus pattern (34 bp):
GGAATAAAATGATTAGGACAAAACTGCAAGTCAA
Found at i:9579037 original size:31 final size:30
Alignment explanation
Indices: 9578956--9579046 Score: 92
Period size: 31 Copynumber: 2.9 Consensus size: 30
9578946 GTGGTAATTG
* *
9578956 AGACTAAGTCACAAGTCGAATAAAGTGATCA
1 AGACTAAGCCACAAGTCGAAT-AAGTGACCA
* * * * *
9578987 AGATTAAACTATAAATCGAATAAGGTGACCA
1 AGACTAAGCCACAAGTCGAATAA-GTGACCA
9579018 AGACTAAGCCACAAGTCGAATGAAGTGAC
1 AGACTAAGCCACAAGTCGAAT-AAGTGAC
9579047 AGTTAATTTT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
30 2 0.04
31 42 0.91
32 2 0.04
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (30 bp):
AGACTAAGCCACAAGTCGAATAAGTGACCA
Found at i:9579088 original size:22 final size:23
Alignment explanation
Indices: 9579057--9579115 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
9579047 AGTTAATTTT
* * *
9579057 GGCTTGCATGCTAGCTTA-TCTA
1 GGCTTACATGCCAGCTAATTCTA
* *
9579079 GGCTTTCATGCCAGCTAATTTTA
1 GGCTTACATGCCAGCTAATTCTA
9579102 GGCTTACATGCCAG
1 GGCTTACATGCCAG
9579116 TTAAATAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 15 0.48
23 16 0.52
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (23 bp):
GGCTTACATGCCAGCTAATTCTA
Found at i:9579111 original size:23 final size:23
Alignment explanation
Indices: 9579050--9579115 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 23
9579040 AAGTGACAGT
* *
9579050 TAATTTT-GGCTTGCATGCTAGC
1 TAATTTTAGGCTTACATGCCAGC
* * *
9579072 TTA-TCTAGGCTTTCATGCCAGC
1 TAATTTTAGGCTTACATGCCAGC
9579094 TAATTTTAGGCTTACATGCCAG
1 TAATTTTAGGCTTACATGCCAG
9579116 TTAAATAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
21 2 0.06
22 17 0.49
23 16 0.46
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (23 bp):
TAATTTTAGGCTTACATGCCAGC
Found at i:9579270 original size:32 final size:32
Alignment explanation
Indices: 9579229--9579351 Score: 126
Period size: 32 Copynumber: 3.8 Consensus size: 32
9579219 ACAGGGTTTA
*
9579229 AAATTTCATTAGGTACAAGCTAAGCTAGGCTT
1 AAATTTCATTAGGTGCAAGCTAAGCTAGGCTT
* *
9579261 AAATTTCATTAGATGCCAA-CTAAGCTGGGCTT
1 AAATTTCATTAGGTG-CAAGCTAAGCTAGGCTT
* *
9579293 AAATTTTCATT-GAGTGCTAGCTACA-TTAGGCTT
1 AAA-TTTCATTAG-GTGCAAGCTA-AGCTAGGCTT
* *
9579326 AAATTTCATTGGGTGCTAGCTAAGCT
1 AAATTTCATTAGGTGCAAGCTAAGCT
9579352 GAACTTAAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
31 1 0.01
32 49 0.64
33 25 0.33
34 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (32 bp):
AAATTTCATTAGGTGCAAGCTAAGCTAGGCTT
Found at i:9579532 original size:34 final size:34
Alignment explanation
Indices: 9579493--9579757 Score: 167
Period size: 34 Copynumber: 8.0 Consensus size: 34
9579483 TCTTTTTTTG
*
9579493 AGTGCTAGATAAATTGGGCTTAAAATTTTCATTG
1 AGTGCTAGATAAATTGGGCTTAAAATTTTCATTA
* * * *
9579527 GGTGCTAGATAAATTGGGCTT-AAATCTACATTC
1 AGTGCTAGATAAATTGGGCTTAAAATTTTCATTA
* * * *
9579560 AGTCCTAGCTAAACTAGGCTT-AAATATTTCATT-
1 AGTGCTAGATAAATTGGGCTTAAAAT-TTTCATTA
* * * *
9579593 AGTTACTAGCTAAACTGGG-TTTAAA-TTTCATTA
1 AG-TGCTAGATAAATTGGGCTTAAAATTTTCATTA
* * * * *
9579626 AG-ACCAAATAAACTAGGCTT-AAATTTTCATT-
1 AGTGCTAGATAAATTGGGCTTAAAATTTTCATTA
9579657 AGTGCCTA-ATAAATTGGGCTTAAATATTTTCA-TA
1 AGTG-CTAGATAAATTGGGCTTAAA-ATTTTCATTA
* *
9579691 AGTACTAGAT-AATCTGGGCTTAAAACTTTCATTA
1 AGTGCTAGATAAAT-TGGGCTTAAAATTTTCATTA
* * * * *
9579725 GGTGCCA-ACTAAAATGGACATAAAATTTTCATT
1 AGTGCTAGA-TAAATTGGGCTTAAAATTTTCATT
9579758 GGTGGCAACT
Statistics
Matches: 185, Mismatches: 30, Indels: 32
0.75 0.12 0.13
Matches are distributed among these distances:
31 16 0.09
32 27 0.15
33 53 0.29
34 87 0.47
35 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (34 bp):
AGTGCTAGATAAATTGGGCTTAAAATTTTCATTA
Found at i:9579575 original size:101 final size:101
Alignment explanation
Indices: 9579400--9579584 Score: 219
Period size: 101 Copynumber: 1.8 Consensus size: 101
9579390 TGGGTACCAA
* * * * * **
9579400 ATAAATTGGGTTTAAAATTTTCATTAGGTGTTAGCTAAGCAAAGCTTAAATCTTCATTGGGTGCC
1 ATAAATTGGGCTTAAAATTTTCATTAGGTGCTAGATAAACAAAGCTTAAATCTACATTCAGTGCC
* *
9579465 AGTTAAACTAAGTTTAAATCTTTTTTTGAGTGCTAG
66 AGCTAAACTAAGCTTAAATCTTTTTTTGAGTGCTAG
* ****
9579501 ATAAATTGGGCTTAAAATTTTCATTGGGTGCTAGATAAATTGGGCTTAAATCTACATTCAGT-CC
1 ATAAATTGGGCTTAAAATTTTCATTAGGTGCTAGATAAACAAAGCTTAAATCTACATTCAGTGCC
*
9579565 TAGCTAAACTAGGCTTAAAT
66 -AGCTAAACTAAGCTTAAAT
9579585 ATTTCATTAG
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
100 2 0.03
101 66 0.97
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (101 bp):
ATAAATTGGGCTTAAAATTTTCATTAGGTGCTAGATAAACAAAGCTTAAATCTACATTCAGTGCC
AGCTAAACTAAGCTTAAATCTTTTTTTGAGTGCTAG
Found at i:9579617 original size:67 final size:65
Alignment explanation
Indices: 9579509--9579681 Score: 172
Period size: 67 Copynumber: 2.7 Consensus size: 65
9579499 AGATAAATTG
* * * * * * **
9579509 GGCTTAAA-ATTTTCATTGGGTGCTAGATAAATTGGGCTTAAATCTACATTCAGTCCTAGCTAAA
1 GGCTTAAATA-TTTCATTAGTTACTAGATAAACTGGGCTTAAAT-TACATTAAGACC-AAATAAA
9579573 CTA
63 CTA
* * *
9579576 GGCTTAAATATTTCATTAGTTACTAGCTAAACTGGGTTTAAATTTCATTAAGACCAAATAAACTA
1 GGCTTAAATATTTCATTAGTTACTAGATAAACTGGGCTTAAATTACATTAAGACCAAATAAACTA
** *
9579641 GGCTTAAAT-TTTCATTAGTGCCTA-ATAAATTGGGCTTAAAT
1 GGCTTAAATATTTCATTAGTTACTAGATAAACTGGGCTTAAAT
9579682 ATTTTCATAA
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
63 14 0.16
64 13 0.15
65 17 0.19
66 9 0.10
67 35 0.39
68 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (65 bp):
GGCTTAAATATTTCATTAGTTACTAGATAAACTGGGCTTAAATTACATTAAGACCAAATAAACTA
Done.