Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 47 of 160
Found at i:10376395 original size:19 final size:19
Alignment explanation
Indices: 10376368--10376411 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
10376358 TCCGACAAGA
*
10376368 TTTCCAGAATCTAATGGGT
1 TTTCCAGAAACTAATGGGT
* *
10376387 TTTCTAGAAACTAGTGGGT
1 TTTCCAGAAACTAATGGGT
10376406 TTTCCA
1 TTTCCA
10376412 ATTTTTGATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (19 bp):
TTTCCAGAAACTAATGGGT
Found at i:10376750 original size:23 final size:23
Alignment explanation
Indices: 10376695--10376758 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
10376685 TTTTTTTTCC
* **
10376695 ATTTTATTTTTATTTTTTGATTTG
1 ATTTT-TTTTTATTTTTTAACCTG
10376719 ATTTTTTTTTATTTTTTAACCT-
1 ATTTTTTTTTATTTTTTAACCTG
*
10376741 ATTTTCTTTTATTATTTT
1 ATTTTTTTTTATT-TTTT
10376759 TTTGTTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 12 0.34
23 18 0.51
24 5 0.14
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (23 bp):
ATTTTTTTTTATTTTTTAACCTG
Found at i:10376761 original size:16 final size:17
Alignment explanation
Indices: 10376742--10376774 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10376732 TTTTAACCTA
10376742 TTTTCTTTTA-TTATTT
1 TTTTCTTTTATTTATTT
*
10376758 TTTTGTTTTATTTATTT
1 TTTTCTTTTATTTATTT
10376775 AAAAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTCTTTTATTTATTT
Found at i:10376894 original size:20 final size:19
Alignment explanation
Indices: 10376871--10376929 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
10376861 CAAAAAAAGT
10376871 AATAAATAAAAAAATCTTTC-
1 AATAAA-AAAAAAAT-TTTCA
*
10376891 AATAAAAAAATATATTTTCA
1 AATAAAAAAA-AAATTTTCA
10376911 AATAAACAAAAATAATTTT
1 AATAAA-AAAAA-AATTTT
10376930 TATCCTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 8 0.24
20 16 0.48
21 9 0.27
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (19 bp):
AATAAAAAAAAAATTTTCA
Found at i:10382858 original size:17 final size:17
Alignment explanation
Indices: 10382836--10382884 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
10382826 TCATTATGGT
10382836 TTTTTTAAATTGAGTTA
1 TTTTTTAAATTGAGTTA
* *
10382853 TTTTTTAATTTGATTTA
1 TTTTTTAAATTGAGTTA
10382870 TGCTTTTTGAAATTG
1 T--TTTTT-AAATTG
10382885 TTAATATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 16 0.62
19 5 0.19
20 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.61
Consensus pattern (17 bp):
TTTTTTAAATTGAGTTA
Found at i:10386198 original size:70 final size:70
Alignment explanation
Indices: 10386085--10386224 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
10386075 CAATATACCA
*
10386085 AAACATCTCTCAATATAATTTTTTGTTTAAGAGTGTTTCATATTGAAATATTCCTATAGGGTCGT
1 AAACATCTCTCAATATAATTTCTTGTTTAAGAGTGTTTCATATTGAAATATTCCTATAGGGTCGT
10386150 CGGTT
66 CGGTT
*
10386155 AAACATCTCTCGATATAATTTCTTGTTTAAGAGTGTTTCATATTGAAATATTCCTATAGGGTCGT
1 AAACATCTCTCAATATAATTTCTTGTTTAAGAGTGTTTCATATTGAAATATTCCTATAGGGTCGT
10386220 CGGTT
66 CGGTT
10386225 GGAGTCCTGC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (70 bp):
AAACATCTCTCAATATAATTTCTTGTTTAAGAGTGTTTCATATTGAAATATTCCTATAGGGTCGT
CGGTT
Found at i:10391988 original size:12 final size:12
Alignment explanation
Indices: 10391973--10392004 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10391963 GGCTGAGTAG
*
10391973 AAGGCTAAGGAA
1 AAGGCCAAGGAA
10391985 AAGGCCAAGGAA
1 AAGGCCAAGGAA
10391997 AAGGCCAA
1 AAGGCCAA
10392005 AGAAGAGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.16, G:0.31, T:0.03
Consensus pattern (12 bp):
AAGGCCAAGGAA
Found at i:10394112 original size:21 final size:21
Alignment explanation
Indices: 10394088--10394132 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10394078 CATGAATATG
10394088 AAATTAAAAGAACTTAAAATT
1 AAATTAAAAGAACTTAAAATT
** *
10394109 AAATTGTAAGAACTTGAAATT
1 AAATTAAAAGAACTTAAAATT
10394130 AAA
1 AAA
10394133 GAAAACTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (21 bp):
AAATTAAAAGAACTTAAAATT
Found at i:10398637 original size:7 final size:7
Alignment explanation
Indices: 10398589--10398687 Score: 62
Period size: 7 Copynumber: 13.4 Consensus size: 7
10398579 TAATATTATT
10398589 AAATACA
1 AAATACA
10398596 ATAATA-A
1 A-AATACA
*
10398603 AAATTAAA
1 AAA-TACA
10398611 CAAATACA
1 -AAATACA
*
10398619 GAATACAAA
1 AAATAC--A
10398628 AAATACA
1 AAATACA
10398635 AAATACAAAA
1 AAATAC---A
10398645 AAATACTA
1 AAATAC-A
10398653 AAATACA
1 AAATACA
10398660 AAATA-A
1 AAATACA
*
10398666 CAA-A-A
1 AAATACA
10398671 AAATACA
1 AAATACA
10398678 AAATACA
1 AAATACA
10398685 AAA
1 AAA
10398688 AAAAGAACAA
Statistics
Matches: 75, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
5 4 0.05
6 6 0.08
7 34 0.45
8 15 0.20
9 9 0.12
10 7 0.09
ACGTcount: A:0.73, C:0.11, G:0.01, T:0.15
Consensus pattern (7 bp):
AAATACA
Found at i:10398655 original size:18 final size:17
Alignment explanation
Indices: 10398612--10398680 Score: 79
Period size: 18 Copynumber: 4.0 Consensus size: 17
10398602 AAAATTAAAC
*
10398612 AAATACAGAATAC-AAA
1 AAATACAAAATACAAAA
10398628 AAATACAAAATACAAAA
1 AAATACAAAATACAAAA
10398645 AAATACTAAAATACAAAA
1 AAATAC-AAAATACAAAA
*
10398663 TAACA-AAAAAATACAAAA
1 -AA-ATACAAAATACAAAA
10398681 TACAAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.26
17 9 0.19
18 22 0.47
19 3 0.06
20 1 0.02
ACGTcount: A:0.74, C:0.12, G:0.01, T:0.13
Consensus pattern (17 bp):
AAATACAAAATACAAAA
Found at i:10398655 original size:25 final size:25
Alignment explanation
Indices: 10398627--10398687 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 25
10398617 CAGAATACAA
10398627 AAAATACAAAAT-ACAAAAAAATAC
1 AAAATACAAAATAACAAAAAAATAC
10398651 TAAAATACAAAATAACAAAAAAATAC
1 -AAAATACAAAATAACAAAAAAATAC
10398677 AAAATACAAAA
1 AAAATACAAAA
10398688 AAAAGAACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 23 0.66
26 12 0.34
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.13
Consensus pattern (25 bp):
AAAATACAAAATAACAAAAAAATAC
Found at i:10398673 original size:11 final size:10
Alignment explanation
Indices: 10398634--10398709 Score: 51
Period size: 10 Copynumber: 8.3 Consensus size: 10
10398624 CAAAAAATAC
10398634 AAAATACAAA
1 AAAATACAAA
*
10398644 AAAATAC--T
1 AAAATACAAA
10398652 AAAATAC-AA
1 AAAATACAAA
*
10398661 AATA-ACAAA
1 AAAATACAAA
10398670 AAAATAC---
1 AAAATACAAA
10398677 AAAATACAAA
1 AAAATACAAA
*
10398687 AAAA-AGAACA
1 AAAATACAA-A
*
10398697 AAAAAACAAA
1 AAAATACAAA
10398707 AAA
1 AAA
10398710 GGGGGGATGG
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
7 7 0.13
8 9 0.17
9 11 0.21
10 22 0.42
11 3 0.06
ACGTcount: A:0.79, C:0.11, G:0.01, T:0.09
Consensus pattern (10 bp):
AAAATACAAA
Found at i:10398681 original size:18 final size:18
Alignment explanation
Indices: 10398652--10398709 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
10398642 AAAAAATACT
10398652 AAAATACAAAATAACAAA
1 AAAATACAAAATAACAAA
10398670 AAAATACAAAAT-ACAAAA
1 AAAATACAAAATAAC-AAA
* *
10398688 AAAAGAACAAAAAAACAAA
1 AAAA-TACAAAATAACAAA
10398707 AAA
1 AAA
10398710 GGGGGGATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 2 0.06
18 19 0.54
19 12 0.34
20 2 0.06
ACGTcount: A:0.81, C:0.10, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAATACAAAATAACAAA
Found at i:10398689 original size:16 final size:16
Alignment explanation
Indices: 10398612--10398662 Score: 75
Period size: 17 Copynumber: 3.1 Consensus size: 16
10398602 AAAATTAAAC
*
10398612 AAATACAGAATACAAA
1 AAATACAAAATACAAA
10398628 AAATACAAAATACAAAA
1 AAATACAAAATAC-AAA
10398645 AAATACTAAAATACAAA
1 AAATAC-AAAATACAAA
10398662 A
1 A
10398663 TAACAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 12 0.38
17 13 0.41
18 7 0.22
ACGTcount: A:0.73, C:0.12, G:0.02, T:0.14
Consensus pattern (16 bp):
AAATACAAAATACAAA
Found at i:10398699 original size:8 final size:8
Alignment explanation
Indices: 10398623--10398709 Score: 50
Period size: 9 Copynumber: 10.0 Consensus size: 8
10398613 AATACAGAAT
10398623 ACAAAAAA
1 ACAAAAAA
10398631 TACAAAATACA
1 -ACAAAA-A-A
*
10398642 A-AAAAAT
1 ACAAAAAA
* *
10398649 ACTAAAAT
1 ACAAAAAA
*
10398657 ACAAAATA
1 ACAAAAAA
10398665 ACAAAAAAA
1 AC-AAAAAA
10398674 TACAAAATACA
1 -ACAAAA-A-A
*
10398685 AAAAAAAGA
1 ACAAAAA-A
10398694 ACAAAAAA
1 ACAAAAAA
10398702 ACAAAAAA
1 ACAAAAAA
10398710 GGGGGGATGG
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
7 1 0.02
8 22 0.35
9 27 0.44
10 10 0.16
11 2 0.03
ACGTcount: A:0.78, C:0.11, G:0.01, T:0.09
Consensus pattern (8 bp):
ACAAAAAA
Found at i:10398710 original size:18 final size:19
Alignment explanation
Indices: 10398637--10398710 Score: 66
Period size: 18 Copynumber: 4.0 Consensus size: 19
10398627 AAAATACAAA
* **
10398637 ATACAAAAAAATACTAAA-
1 ATACAAAAAAACAAAAAAG
*
10398655 ATACAAAATAACAAAAAA-
1 ATACAAAAAAACAAAAAAG
10398673 ATACAAAATACAA-AAAAAAG
1 ATACAAAA-A-AACAAAAAAG
10398693 A-ACAAAAAAACAAAAAAG
1 ATACAAAAAAACAAAAAAG
10398711 GGGGGATGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
17 2 0.04
18 30 0.64
19 12 0.26
20 3 0.06
ACGTcount: A:0.77, C:0.11, G:0.03, T:0.09
Consensus pattern (19 bp):
ATACAAAAAAACAAAAAAG
Found at i:10399829 original size:23 final size:21
Alignment explanation
Indices: 10399779--10399818 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10399769 GTTAATTTTT
10399779 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
10399800 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
10399819 TACCAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:10400022 original size:18 final size:18
Alignment explanation
Indices: 10399996--10400041 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
10399986 TTTTTTTATA
10399996 AAGTAATAAA-TAAGAACT
1 AAGTAATAAATTAAGAA-T
*
10400014 AATTAATAAATTAAGAAT
1 AAGTAATAAATTAAGAAT
10400032 AAGTAATAAA
1 AAGTAATAAA
10400042 AAATAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (18 bp):
AAGTAATAAATTAAGAAT
Found at i:10412121 original size:49 final size:50
Alignment explanation
Indices: 10412006--10412451 Score: 438
Period size: 49 Copynumber: 8.9 Consensus size: 50
10411996 TTTAAGAACG
* * * ** *
10412006 GATGAGACTTTTAAAGTCGTTGAGCTTCTATTGAGATGAGCTTTTTTTCAA
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTTCAA
* *
10412057 GATGAGAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTTC-A
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
* **
10412106 GATGAGATTTTTAAAGTTGTTGAACCTCTATTGAGAGGAG--TTTTTCAA
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
* * **
10412154 GATGAGAATTTTTAAAATTGTTCAGCCTCTGCTGAGAGGAGCCCTTTTCAA
1 GATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
* * *
10412205 GATAAGATTTTTAAAGTTGTTGAACCTCTGCTGAGAGGAG-TCCTTTTCAA
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCT-TTTTTCAA
* * * ** *
10412255 GATGAGA-TTTTAAAGTTGTTAAGCCTTTGCTGCGATTAGCCATTTTTCAA
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTTCAA
* * * * * *
10412305 GAAGAGAAATTTTAAAGTTATTGAGCCTCTACTAATAGGAGC--TTTTCAA
1 GATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
* * * *
10412354 GATGAGAATTTTTAAAGTTGTTAAGCTTCTGCTGAGAGAAGCCTTTTTCAA
1 GATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
* * * *
10412405 GATAAAATTTTTAAAGTTATTGAGCCTCTGTTGAGAGGAGTCTTTTT
1 GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTT
10412452 CAAATTTTAA
Statistics
Matches: 324, Mismatches: 59, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
47 6 0.02
48 7 0.02
49 131 0.40
50 93 0.29
51 64 0.20
52 23 0.07
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (50 bp):
GATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAA
Found at i:10412243 original size:99 final size:98
Alignment explanation
Indices: 10412049--10412450 Score: 477
Period size: 99 Copynumber: 4.1 Consensus size: 98
10412039 AGATGAGCTT
* * * *
10412049 TTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTTC-AGATGAGA
1 TTTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATAAGA
* *
10412113 TTTTTAAAGTTGTTGAACCTCTATTGAGAGGAG
66 TTTTTAAAGTTATTGAACCTCTACTGAGAGGAG
* * *
10412146 TTTTTCAAGATGAGAATTTTTAAAATTGTTCAGCCTCTGCTGAGAGGAGCCCTTTTCAAGATAAG
1 TTTTTCAAGATGAGAA-TTTTAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATAAG
* *
10412211 ATTTTTAAAGTTGTTGAACCTCTGCTGAGAGGAG
65 ATTTTTAAAGTTATTGAACCTCTACTGAGAGGAG
* * **
10412245 TCCTTTTCAAGATGAG-ATTTTAAAGTTGTTAAGCCTTTGCTGCGATTAGCCATTTTTCAAGA-A
1 T--TTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTCTGCTGAGAGGAGCC-TTTTTCAAGATA
* * * *
10412308 GAGAAATTTTAAAGTTATTGAGCCTCTACTAATAGGAG
63 -AG-ATTTTTAAAGTTATTGAACCTCTACTGAGAGGAG
* * * *
10412346 CTTTTCAAGATGAGAATTTTTAAAGTTGTTAAGCTTCTGCTGAGAGAAGCCTTTTTCAAGATAAA
1 TTTTTCAAGATGAGAA-TTTTAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATAAG
* **
10412411 ATTTTTAAAGTTATTGAGCCTCTGTTGAGAGGAG
65 ATTTTTAAAGTTATTGAACCTCTACTGAGAGGAG
10412445 TCTTTT
1 T-TTTT
10412451 TCAAATTTTA
Statistics
Matches: 260, Mismatches: 34, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
97 16 0.06
98 35 0.13
99 110 0.42
100 28 0.11
101 71 0.27
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (98 bp):
TTTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATAAGA
TTTTTAAAGTTATTGAACCTCTACTGAGAGGAG
Found at i:10412361 original size:200 final size:198
Alignment explanation
Indices: 10412050--10412454 Score: 569
Period size: 200 Copynumber: 2.0 Consensus size: 198
10412040 GATGAGCTTT
* * * *
10412050 TTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTTCAGATGAGATT
1 TTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTTTGCTGAGAGGAGCATTTTTCAGAAGAGAAT
* * * * *
10412115 TTTAAAGTTGTTGAACCTCTATTGAGAGGAGTTTTTCAAGATGAGAATTTTTAAAATTGTTCAGC
66 TTTAAAGTTATTGAACCTCTACTAAGAGGAGCTTTTCAAGATGAGAATTTTTAAAATTGTTAAGC
* * *
10412180 CTCTGCTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGTTGTTGAACCTCTGCTGAGAGGAG
131 CTCTGCTGAGAGAAGCCCTTTTCAAGATAAAATTTTTAAAGTTATTGAACCTCTGCTGAGAGGAG
10412245 TCC
196 TCC
* **
10412248 TTTTCAAGATGAG-ATTTTAAAGTTGTTAAGCCTTTGCTGCGATTAGCCATTTTTCAAGAAGAGA
1 TTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTTTGCTGAGAGGAG-CATTTTTC-AGAAGAG-
* * *
10412312 AATTTTAAAGTTATTGAGCCTCTACTAATAGGAGCTTTTCAAGATGAGAATTTTTAAAGTTGTTA
63 AATTTTAAAGTTATTGAACCTCTACTAAGAGGAGCTTTTCAAGATGAGAATTTTTAAAATTGTTA
* * * *
10412377 AGCTTCTGCTGAGAGAAGCCTTTTTCAAGATAAAATTTTTAAAGTTATTGAGCCTCTGTTGAGAG
128 AGCCTCTGCTGAGAGAAGCCCTTTTCAAGATAAAATTTTTAAAGTTATTGAACCTCTGCTGAGAG
*
10412442 GAGTCT
193 GAGTCC
10412448 TTTTCAA
1 TTTTCAA
10412455 ATTTTAAATT
Statistics
Matches: 181, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
197 29 0.16
198 20 0.11
199 6 0.03
200 126 0.70
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (198 bp):
TTTTCAAGATGAGAATTTTAAAGTTGTTAAGCCTTTGCTGAGAGGAGCATTTTTCAGAAGAGAAT
TTTAAAGTTATTGAACCTCTACTAAGAGGAGCTTTTCAAGATGAGAATTTTTAAAATTGTTAAGC
CTCTGCTGAGAGAAGCCCTTTTCAAGATAAAATTTTTAAAGTTATTGAACCTCTGCTGAGAGGAG
TCC
Found at i:10412757 original size:16 final size:16
Alignment explanation
Indices: 10412736--10412770 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10412726 AAAATTAAAC
*
10412736 AAATACATAATACAAA
1 AAATACAAAATACAAA
*
10412752 AAATACAAAATATAAA
1 AAATACAAAATACAAA
10412768 AAA
1 AAA
10412771 AAAACAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATACAAAATACAAA
Found at i:10412759 original size:22 final size:22
Alignment explanation
Indices: 10412713--10412760 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 22
10412703 TAATATTATT
10412713 AAATACAATAATAAAAATTAAAC
1 AAATACAATAATAAAAA-TAAAC
10412736 AAATAC-ATAATACAAAA-AATAC
1 AAATACAATAATA-AAAATAA-AC
10412758 AAA
1 AAA
10412761 ATATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 2 0.09
22 11 0.48
23 10 0.43
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (22 bp):
AAATACAATAATAAAAATAAAC
Found at i:10416404 original size:17 final size:17
Alignment explanation
Indices: 10416377--10416411 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10416367 TCAAATATTA
10416377 TTTCATTTTAATTTCTTT
1 TTTCATTTTAATTT-TTT
10416395 TTTC-TTTTAATTTTTT
1 TTTCATTTTAATTTTTT
10416411 T
1 T
10416412 ATAAAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCATTTTAATTTTTT
Found at i:10417381 original size:26 final size:25
Alignment explanation
Indices: 10417357--10417405 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
10417347 AGATTAATAA
10417357 AAATTAATATAT-TTTATAAAAAAT
1 AAATTAATATATATTTATAAAAAAT
*
10417381 ATATTAATATATATTTATAAAAAAT
1 AAATTAATATATATTTATAAAAAAT
10417406 TATTTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AAATTAATATATATTTATAAAAAAT
Found at i:10417389 original size:24 final size:24
Alignment explanation
Indices: 10417359--10417417 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
10417349 ATTAATAAAA
10417359 ATTAATATAT-TTTATAAAAAATAT
1 ATTAATATATATTTATAAAAAAT-T
10417383 ATTAATATATATTTATAAAAAATT
1 ATTAATATATATTTATAAAAAATT
10417407 ATTTAA-ATATA
1 A-TTAATATATA
10417418 CAAGATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 17 0.52
25 16 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTAATATATATTTATAAAAAATT
Found at i:10419850 original size:2 final size:2
Alignment explanation
Indices: 10419843--10419873 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10419833 GCCTTCAAAC
10419843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10419874 GTTTAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10420505 original size:2 final size:2
Alignment explanation
Indices: 10420498--10420538 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
10420488 TATCAATAAT
*
10420498 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10420539 AGTGCACAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:10424249 original size:52 final size:51
Alignment explanation
Indices: 10424097--10424253 Score: 199
Period size: 52 Copynumber: 3.0 Consensus size: 51
10424087 TATAACCATA
* * * *
10424097 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCT-TTCTCTTAGAATTCTTCTCTTGCAAGT
*
10424149 CAAACTTGCCTATTAAGAATCCCTTTTCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCC-TTTCTCTTAGAATTCTTCTCTTGCAAGT
* * *
10424201 CAAACTTACCTATTAAGAATCCTCTTTCTCTT-GAAATTTTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCTCTTAG-AATTCTTCTCTTGCAAGT
10424253 C
1 C
10424254 TTCTTGTCCA
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
51 1 0.01
52 90 0.97
53 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.40
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:10424296 original size:11 final size:11
Alignment explanation
Indices: 10424280--10424319 Score: 80
Period size: 11 Copynumber: 3.6 Consensus size: 11
10424270 AATATCTGAT
10424280 AAATCTCAAAC
1 AAATCTCAAAC
10424291 AAATCTCAAAC
1 AAATCTCAAAC
10424302 AAATCTCAAAC
1 AAATCTCAAAC
10424313 AAATCTC
1 AAATCTC
10424320 TTATGGGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.20
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:10424586 original size:25 final size:25
Alignment explanation
Indices: 10424555--10424616 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
10424545 AACCAAGCTC
*
10424555 TTCCCATATCTCGAACTGTCAACTA
1 TTCCCATATCTCGAACTATCAACTA
* * *
10424580 TTCCCATGTCTCGAACTATCAGCTC
1 TTCCCATATCTCGAACTATCAACTA
*
10424605 TTCCCACATCTC
1 TTCCCATATCTC
10424617 AAACATTTGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.37, G:0.08, T:0.32
Consensus pattern (25 bp):
TTCCCATATCTCGAACTATCAACTA
Found at i:10424689 original size:31 final size:30
Alignment explanation
Indices: 10424651--10424763 Score: 154
Period size: 31 Copynumber: 3.7 Consensus size: 30
10424641 GAACTTTCAA
*
10424651 CTCTGATACCACTTGTTGGGAAACACCACAG
1 CTCTGATACCATTTGTTGGG-AACACCACAG
* * *
10424682 CTCTGATACTATTTGTTGAGGATCACTACAG
1 CTCTGATACCATTTGTTG-GGAACACCACAG
*
10424713 CTCTGATACCATTTGTTGGGGAATACCACAG
1 CTCTGATACCATTTGTT-GGGAACACCACAG
10424744 CTCTGATACCATTTGTTGGG
1 CTCTGATACCATTTGTTGGG
10424764 CTAAAAGCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.04
31 66 0.92
32 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (30 bp):
CTCTGATACCATTTGTTGGGAACACCACAG
Found at i:10425334 original size:52 final size:52
Alignment explanation
Indices: 10425248--10425404 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 52
10425238 TATAACCATA
* * *
10425248 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
* * *
10425300 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTTTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
* **
10425352 CAAACTTACCTATTAAGAATCCTCTTT-CTCTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTCTTAG-AATTCTTCTCCTGCAAGT
10425404 C
1 C
10425405 TTTTTGTCCA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 1 0.01
52 88 0.95
53 4 0.04
ACGTcount: A:0.25, C:0.26, G:0.09, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
Found at i:10425606 original size:37 final size:37
Alignment explanation
Indices: 10425557--10425636 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 37
10425547 TGTGAAAACA
*
10425557 ATTTATTTTCAAAAA-TATCTTCTAATATGTTGGTAAG
1 ATTT-TTTTCAAAAATTATCCTCTAATATGTTGGTAAG
10425594 ATTTTTTGTCAAAAATTATCCTCTAATATGTTGGTAAG
1 ATTTTTT-TCAAAAATTATCCTCTAATATGTTGGTAAG
10425632 ATTTT
1 ATTTT
10425637 AAAAAATACT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
36 3 0.08
37 11 0.28
38 26 0.65
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (37 bp):
ATTTTTTTCAAAAATTATCCTCTAATATGTTGGTAAG
Found at i:10426067 original size:26 final size:28
Alignment explanation
Indices: 10426038--10426093 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
10426028 AAAACAAAAT
* *
10426038 TAGAAAACCAA-AAAAAAAA-GTCAAAC
1 TAGAAAACAAACAAAAAAAAGGACAAAC
*
10426064 TAGAAAATAAACAAAAAAAAGGACAAAC
1 TAGAAAACAAACAAAAAAAAGGACAAAC
10426092 TA
1 TA
10426094 ACGAAACGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.36
27 8 0.32
28 8 0.32
ACGTcount: A:0.70, C:0.12, G:0.09, T:0.09
Consensus pattern (28 bp):
TAGAAAACAAACAAAAAAAAGGACAAAC
Found at i:10427670 original size:17 final size:17
Alignment explanation
Indices: 10427645--10427677 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10427635 AAATTTCAAT
*
10427645 ATTTTTAAAGGTTTCAG
1 ATTTGTAAAGGTTTCAG
10427662 ATTTGTAAAGGTTTCA
1 ATTTGTAAAGGTTTCA
10427678 AGTTTCACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (17 bp):
ATTTGTAAAGGTTTCAG
Found at i:10427726 original size:18 final size:18
Alignment explanation
Indices: 10427667--10427728 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
10427657 TTCAGATTTG
*
10427667 TAAAGGTTTCAAGTTTCA
1 TAAAGGTTCCAAGTTTCA
* * * *
10427685 CAAAAGTTCTAA-ATTCGA
1 TAAAGGTTCCAAGTTTC-A
10427703 -AAAGGTTCCAAGTTTCA
1 TAAAGGTTCCAAGTTTCA
10427720 TAAAGGTTC
1 TAAAGGTTC
10427729 TAGAGTCATA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 13 0.39
18 20 0.61
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (18 bp):
TAAAGGTTCCAAGTTTCA
Found at i:10427821 original size:33 final size:33
Alignment explanation
Indices: 10427784--10427847 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
10427774 AAGACTTCAT
* * *
10427784 ATTCGTAAAAATTTTAGATTCATAAGAATTTAA
1 ATTCGCAAAAATTTCAGATTCACAAGAATTTAA
* *
10427817 ATTCGCAATAATTTCATATTCACAAGAATTT
1 ATTCGCAAAAATTTCAGATTCACAAGAATTT
10427848 CAGTCTCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (33 bp):
ATTCGCAAAAATTTCAGATTCACAAGAATTTAA
Found at i:10427848 original size:17 final size:17
Alignment explanation
Indices: 10427801--10427849 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
10427791 AAAATTTTAG
*
10427801 ATTCATAAGAATTT-AA
1 ATTCACAAGAATTTCAA
* * *
10427817 ATTCGCAATAATTTCAT
1 ATTCACAAGAATTTCAA
10427834 ATTCACAAGAATTTCA
1 ATTCACAAGAATTTCA
10427850 GTCTCATAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (17 bp):
ATTCACAAGAATTTCAA
Found at i:10428253 original size:47 final size:45
Alignment explanation
Indices: 10428147--10428409 Score: 165
Period size: 46 Copynumber: 5.8 Consensus size: 45
10428137 TTAGAGATTG
* * * * ***
10428147 ACATCGAAAATTTAAAAAATTCACATTCA-AAAACTTTAATATTTC
1 ACATCCAAAATTTCAAAAATTCTCATT-AGAAAATTTTAGGGTTTC
* *
10428192 ACAACCTAAAATTTCAAAAATTCTCATCTAGAAAATTTTAGGGTTTT
1 ACATCC-AAAATTTCAAAAATTCTCAT-TAGAAAATTTTAGGGTTTC
* * * * *
10428239 ACATCCAAATATTTCAAAGATTCACATTCGAAAAATTTTAGAGATTC
1 ACATCCAAA-ATTTCAAAAATTCTCATTAG-AAAATTTTAGGGTTTC
* * * * * *
10428286 ACATCCAAAGTTTCAAAAGTTCTTTC-TCA-AAAACTTTA-TGCTTC
1 ACATCCAAAATTTCAAAAATTC--TCATTAGAAAATTTTAGGGTTTC
* * * * *
10428330 ACATCCAAAATTTTAAAGATTATTATTCAAAAAATTTTAGGGTTTC
1 ACATCCAAAATTTCAAAAATTCTCATT-AGAAAATTTTAGGGTTTC
* * * *
10428376 ACATTCAAATTTTCAAATATTCTCATTTGAAAAT
1 ACATCCAAAATTTCAAAAATTCTCATTAGAAAAT
10428410 CTACTTTAAA
Statistics
Matches: 164, Mismatches: 43, Indels: 22
0.72 0.19 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 22 0.13
45 25 0.15
46 59 0.36
47 55 0.34
48 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.36
Consensus pattern (45 bp):
ACATCCAAAATTTCAAAAATTCTCATTAGAAAATTTTAGGGTTTC
Found at i:10428693 original size:24 final size:24
Alignment explanation
Indices: 10428661--10428723 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
10428651 ATGTTTTCTA
10428661 CATGATGCACATGCATACCTCAAT
1 CATGATGCACATGCATACCTCAAT
* *
10428685 CATGATGCACATGCATGCCTTAAT
1 CATGATGCACATGCATACCTCAAT
* *
10428709 TATGATGCAAATGCA
1 CATGATGCACATGCA
10428724 ATTATCAAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (24 bp):
CATGATGCACATGCATACCTCAAT
Found at i:10429059 original size:3 final size:3
Alignment explanation
Indices: 10429053--10429200 Score: 88
Period size: 3 Copynumber: 52.3 Consensus size: 3
10429043 GTCGATTTTT
* * * * * *
10429053 TTA TTA TTTA TTA TTG TTG TTA CTA GTA TTA -TA TTA CTA -TA GTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
10429097 -TA TT- TTA TTA TTA -TG TTA TTA TATA TTA TTA -TA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* *
10429138 -TC TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA -TA GTA TGGTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA
10429181 TTA -TA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
10429201 ATAATACTAA
Statistics
Matches: 117, Mismatches: 11, Indels: 34
0.72 0.07 0.21
Matches are distributed among these distances:
2 24 0.21
3 85 0.73
4 6 0.05
5 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:10429135 original size:36 final size:37
Alignment explanation
Indices: 10429082--10429200 Score: 127
Period size: 36 Copynumber: 3.2 Consensus size: 37
10429072 TTACTAGTAT
* * * *
10429082 TATATTACTATAGTATATTTTATTATTA-TGTTATTA
1 TATATTATTATATTATATTATATTATTATTATTATTA
*
10429118 TATATTATTATATTATATTATCTTATTATTATTATTA
1 TATATTATTATATTATATTATATTATTATTATTATTA
* *
10429155 T-TATTATTATATTATAGTATGGTATATTA-TATTATTA
1 TATATTATTATATTATATTAT-AT-TATTATTATTATTA
10429192 TTATATTAT
1 -TATATTAT
10429201 ATAATACTAA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
36 42 0.59
37 17 0.24
38 6 0.08
39 6 0.08
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (37 bp):
TATATTATTATATTATATTATATTATTATTATTATTA
Found at i:10429137 original size:31 final size:32
Alignment explanation
Indices: 10429095--10429202 Score: 123
Period size: 31 Copynumber: 3.3 Consensus size: 32
10429085 ATTACTATAG
*
10429095 TATATTTTATTAT-TATGTTATTATATATTAT
1 TATATTATATTATATATGTTATTATATATTAT
* *
10429126 TATATTATATTATCT-TATTATTAT-TATTAT
1 TATATTATATTATATATGTTATTATATATTAT
10429156 TATTATTATATTATAGTATGGTATATTATATTATTAT
1 TA-TATTATATTATA-TAT-GT-TATTATA-TATTAT
10429193 TATATTATAT
1 TATATTATAT
10429203 AATACTAACA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
30 8 0.12
31 31 0.48
32 2 0.03
33 1 0.02
34 1 0.02
35 6 0.09
36 8 0.12
37 8 0.12
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (32 bp):
TATATTATATTATATATGTTATTATATATTAT
Found at i:10429169 original size:5 final size:5
Alignment explanation
Indices: 10429079--10429202 Score: 85
Period size: 5 Copynumber: 23.6 Consensus size: 5
10429069 TTGTTACTAG
*
10429079 TATTA TATTA CTATAGTA TATTT TATTA TTATGT- TATTA TA-TA TTATTA
1 TATTA TATTA -TAT--TA TATTA TATTA -TAT-TA TATTA TATTA -TATTA
* *
10429128 TATTA TATTA T-CT- TATTA TTATTA TTATTA TTATTA TATTA TAGTA
1 TATTA TATTA TATTA TATTA -TATTA -TATTA -TATTA TATTA TATTA
**
10429174 TGGTA TATTA TATTA TTATTA TATTA TAT
1 TATTA TATTA TATTA -TATTA TATTA TAT
10429203 AATACTAACA
Statistics
Matches: 99, Mismatches: 8, Indels: 24
0.76 0.06 0.18
Matches are distributed among these distances:
3 1 0.01
4 5 0.05
5 57 0.58
6 30 0.30
7 4 0.04
8 2 0.02
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:10430024 original size:5 final size:5
Alignment explanation
Indices: 10430010--10430097 Score: 51
Period size: 5 Copynumber: 17.0 Consensus size: 5
10430000 TGATCACAGG
* *
10430010 TTTT- TTTTA TTTTA TTTT- TATTT- TTTAA TTTT- TGGTTA TTTTA TATTGTAA
1 TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA T-TTTA TTTTA T-TT-T-A
10430061 GTTTTTA TTTT- TATTTA TTTTA TTTTA TTTTA TTTTA
1 -TT-TTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA
10430098 CTGATTTTAT
Statistics
Matches: 68, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
4 9 0.13
5 46 0.68
6 6 0.09
7 2 0.03
8 3 0.04
9 2 0.03
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:10430081 original size:15 final size:15
Alignment explanation
Indices: 10430010--10430097 Score: 76
Period size: 15 Copynumber: 6.0 Consensus size: 15
10430000 TGATCACAGG
10430010 TTTTT-TTTATTTTA
1 TTTTTATTTATTTTA
*
10430024 TTTTTATTT-TTTAA
1 TTTTTATTTATTTTA
**
10430038 TTTTTGGTTATTTTA
1 TTTTTATTTATTTTA
* **
10430053 TATTGTAAGT-TTTTA
1 T-TTTTATTTATTTTA
10430068 TTTTTATTTATTTTA
1 TTTTTATTTATTTTA
10430083 -TTTTATTTTATTTTA
1 TTTTTA-TTTATTTTA
10430098 CTGATTTTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
14 26 0.45
15 28 0.48
16 4 0.07
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (15 bp):
TTTTTATTTATTTTA
Found at i:10430116 original size:4 final size:5
Alignment explanation
Indices: 10430063--10430097 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
10430053 TATTGTAAGT
10430063 TTTTA TTTT- TATTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA
10430098 CTGATTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.04
5 26 0.93
6 1 0.04
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10433481 original size:3 final size:3
Alignment explanation
Indices: 10433473--10433576 Score: 58
Period size: 3 Copynumber: 36.0 Consensus size: 3
10433463 TCGAGTTTCG
* * * *
10433473 TTA TTA TTA TTA TTT TTG TT- TTA TTA ATA TTA TTA TTTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * * *
10433518 TTA TTA CTA -TA GTA -TA GTA -TA ATG TTA TTA -TA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10433562 TTA -TA TTTA TTA TTA
1 TTA TTA -TTA TTA TTA
10433577 GTATAGTATG
Statistics
Matches: 81, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
2 12 0.15
3 65 0.80
4 4 0.05
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:10433493 original size:23 final size:23
Alignment explanation
Indices: 10433467--10433510 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
10433457 TCGGAGTCGA
* *
10433467 GTTTCGTTATTATTATTATTTTT
1 GTTTCATTAATATTATTATTTTT
*
10433490 GTTTTATTAATATTATTATTT
1 GTTTCATTAATATTATTATTT
10433511 GTTATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (23 bp):
GTTTCATTAATATTATTATTTTT
Found at i:10433574 original size:9 final size:8
Alignment explanation
Indices: 10433474--10433692 Score: 72
Period size: 8 Copynumber: 25.9 Consensus size: 8
10433464 CGAGTTTCGT
10433474 TATTATTA
1 TATTATTA
* *
10433482 TTATTTTTG
1 -TATTATTA
*
10433491 TTTTATTAA
1 TATTATT-A
10433500 TATTATTA
1 TATTATTA
*
10433508 T-TTGTTA
1 TATTATTA
10433515 TTATTATTA
1 -TATTATTA
*
10433524 CTA-TAGTA
1 -TATTATTA
* *
10433532 TAGTATAA
1 TATTATTA
*
10433540 TGTTATTA
1 TATTATTA
10433548 TATTATTA
1 TATTATTA
10433556 TCATTATTA
1 T-ATTATTA
10433565 TATTTATTA
1 TA-TTATTA
*
10433574 TTAGTATAGTA
1 -TA-T-TATTA
*
10433585 TGTTATTA
1 TATTATTA
* *
10433593 CAATATGGTA
1 TATTAT--TA
*
10433603 TATTAGTA
1 TATTATTA
*
10433611 TAGTA-TA
1 TATTATTA
*
10433618 TATTA-CA
1 TATTATTA
* *
10433625 GAATATTA
1 TATTATTA
10433633 TATTGCATTA
1 TATT--ATTA
10433643 TATTATTA
1 TATTATTA
*
10433651 CTATTATAGTC
1 -TATTAT--TA
10433662 TATTATTA
1 TATTATTA
10433670 T-TATATT-
1 TAT-TATTA
10433677 TATTATTA
1 TATTATTA
10433685 TTATTATT
1 -TATTATT
10433693 GTTGTTGTTG
Statistics
Matches: 154, Mismatches: 36, Indels: 40
0.67 0.16 0.17
Matches are distributed among these distances:
7 23 0.15
8 56 0.36
9 47 0.31
10 23 0.15
11 5 0.03
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (8 bp):
TATTATTA
Found at i:10433579 original size:48 final size:49
Alignment explanation
Indices: 10433493--10433585 Score: 122
Period size: 48 Copynumber: 1.9 Consensus size: 49
10433483 TATTTTTGTT
*
10433493 TTATTAATATTATTATTTGTTATTATTATTACTATAGTATAGTATAATG
1 TTATTAATATTATTATTTATTATTATTATTACTATAGTATAGTATAATG
10433542 TTATT-ATATTATTATCATTATTA-TATTTATTA-T-TAGTATAGTAT
1 TTATTAATATTATTAT--TTATTATTA-TTATTACTATAGTATAGTAT
10433586 GTTATTACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
48 21 0.52
49 8 0.20
50 11 0.28
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (49 bp):
TTATTAATATTATTATTTATTATTATTATTACTATAGTATAGTATAATG
Found at i:10433668 original size:3 final size:3
Alignment explanation
Indices: 10433639--10433692 Score: 51
Period size: 3 Copynumber: 18.0 Consensus size: 3
10433629 ATTATATTGC
*
10433639 ATT A-T ATT ATT ACT ATT A-T AGTCT ATT ATT ATT A-T ATTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-T-T ATT ATT ATT ATT A-TT ATT ATT
10433684 ATT ATT ATT
1 ATT ATT ATT
10433693 GTTGTTGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
2 6 0.14
3 32 0.74
4 3 0.07
5 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:10434513 original size:8 final size:8
Alignment explanation
Indices: 10434497--10434582 Score: 57
Period size: 8 Copynumber: 10.1 Consensus size: 8
10434487 TTTTTTTTCA
10434497 TTTTATTT
1 TTTTATTT
*
10434505 TTATTTTTT
1 TT-TTATTT
10434514 GATTTTA-TT
1 --TTTTATTT
10434523 TTTTATTT
1 TTTTATTT
10434531 TTTTATATT
1 TTTTAT-TT
**
10434540 TTAAATTT
1 TTTTATTT
*
10434548 TTTTATTA
1 TTTTATTT
*
10434556 CTTTATTT
1 TTTTATTT
*
10434564 TTAGTTTTTT
1 TT--TTATTT
10434574 TTTTATTT
1 TTTTATTT
10434582 T
1 T
10434583 ACTGACTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
7 5 0.08
8 30 0.51
9 13 0.22
10 9 0.15
11 2 0.03
ACGTcount: A:0.17, C:0.01, G:0.02, T:0.79
Consensus pattern (8 bp):
TTTTATTT
Found at i:10434513 original size:19 final size:20
Alignment explanation
Indices: 10434489--10434533 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
10434479 TCACAAGTTT
10434489 TTTTTTCATTTTA-TTTTTA
1 TTTTTTCATTTTATTTTTTA
*
10434508 TTTTTTGATTTTATTTTTTA
1 TTTTTTCATTTTATTTTTTA
10434528 TTTTTT
1 TTTTTT
10434534 TATATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTTTCATTTTATTTTTTA
Found at i:10434534 original size:15 final size:15
Alignment explanation
Indices: 10434516--10434565 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 15
10434506 TATTTTTTGA
10434516 TTTTATTTTTTATTT
1 TTTTATTTTTTATTT
*
10434531 TTTTATATTTTAAATTT
1 TTTTAT-TTTT-TATTT
*
10434548 TTTTATTACTTTATTT
1 TTTTATT-TTTTATTT
10434564 TT
1 TT
10434566 AGTTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 6 0.21
16 11 0.38
17 12 0.41
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTTATTT
Found at i:10437623 original size:42 final size:43
Alignment explanation
Indices: 10437552--10437641 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 43
10437542 TTGAAAATGT
* * * *
10437552 CTCGGATATTACCACCAAGAAAATTAAATTCA-AGTTTTAACA
1 CTCGAATATCACCACCAAGAAAATGAAATTCAGACTTTTAACA
* * * *
10437594 CTCGAATATCACCACCGAGAATATGAAATTTAGACTTTTAATA
1 CTCGAATATCACCACCAAGAAAATGAAATTCAGACTTTTAACA
10437637 CTCGA
1 CTCGA
10437642 CATCATCATT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 26 0.67
43 13 0.33
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (43 bp):
CTCGAATATCACCACCAAGAAAATGAAATTCAGACTTTTAACA
Found at i:10437743 original size:14 final size:14
Alignment explanation
Indices: 10437732--10437763 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10437722 TGTATTTTAT
10437732 TTTTTCTTTTTTTC
1 TTTTTCTTTTTTTC
*
10437746 TTTTTCTTTCTTTC
1 TTTTTCTTTTTTTC
10437760 TTTT
1 TTTT
10437764 CTAGCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTCTTTTTTTC
Found at i:10437996 original size:18 final size:20
Alignment explanation
Indices: 10437964--10438011 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
10437954 AAAAAATATT
10437964 TGTTGAAAAACAAAAAAACTA
1 TGTT-AAAAACAAAAAAACTA
*
10437985 -GTTAAAAA-AAAAAACCTA
1 TGTTAAAAACAAAAAAACTA
10438003 TGTTAAAAA
1 TGTTAAAAA
10438012 GCTAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 13 0.52
20 3 0.12
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.21
Consensus pattern (20 bp):
TGTTAAAAACAAAAAAACTA
Found at i:10445126 original size:24 final size:24
Alignment explanation
Indices: 10445099--10445146 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10445089 ATTTGTATTT
10445099 CATTCGCATCATTTTGAA-AAAAGA
1 CATTCGCATCATTTT-AAGAAAAGA
**
10445123 CATTTTCATCATTTTAAGAAAAGA
1 CATTCGCATCATTTTAAGAAAAGA
10445147 AATTTGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (24 bp):
CATTCGCATCATTTTAAGAAAAGA
Found at i:10445136 original size:59 final size:59
Alignment explanation
Indices: 10445081--10445193 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 59
10445071 GGCATTTTTG
* * *
10445081 GAAAAGACATTTGTATTTCATTCGCATCATTTTGAAAAAAGACATTTTCATCATTTTAA
1 GAAAAGAAATTTGTAATTCATTCGCATCATTTTGAAAAAAGACATTTGCATCATTTTAA
** *
10445140 GAAAAGAAATTTGTAATTCATTTTCATCATTTTGAGAAAAGACATTTGCATCAT
1 GAAAAGAAATTTGTAATTCATTCGCATCATTTTGAAAAAAGACATTTGCATCAT
10445194 AGTTGTGTTC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (59 bp):
GAAAAGAAATTTGTAATTCATTCGCATCATTTTGAAAAAAGACATTTGCATCATTTTAA
Found at i:10445151 original size:24 final size:24
Alignment explanation
Indices: 10445105--10445151 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
10445095 ATTTCATTCG
*
10445105 CATCATTTTGAAAAAAGACATTTT
1 CATCATTTTGAAAAAAGAAATTTT
10445129 CATCATTTT-AAGAAAAGAAATTT
1 CATCATTTTGAA-AAAAGAAATTT
10445152 GTAATTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (24 bp):
CATCATTTTGAAAAAAGAAATTTT
Found at i:10445160 original size:26 final size:24
Alignment explanation
Indices: 10445106--10445163 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 24
10445096 TTTCATTCGC
* *
10445106 ATCATTTTGAAAAAAGACATTTTC
1 ATCATTTTGAAAAAAGAAATTTTA
10445130 ATCATTTT-AAGAAAAGAAATTTGTA
1 ATCATTTTGAA-AAAAGAAATTT-TA
10445155 ATTCATTTT
1 A-TCATTTT
10445164 CATCATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 2 0.07
24 18 0.62
25 2 0.07
26 7 0.24
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (24 bp):
ATCATTTTGAAAAAAGAAATTTTA
Found at i:10445348 original size:43 final size:44
Alignment explanation
Indices: 10445301--10445386 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
10445291 TTAAAGTTAT
* * *
10445301 TGAGCCTCTCTTTACATGAGCC-ATTTATATTTTTAAAAGTCAC
1 TGAGCCTCTATTTACATGAGCCTATTTAAATTTTCAAAAGTCAC
* *
10445344 TGAGCCTCTATTTAGATGAGCCTTTTTAAATTTTCAAAAGTCA
1 TGAGCCTCTATTTACATGAGCCTATTTAAATTTTCAAAAGTCA
10445387 TCAAGCTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 20 0.54
44 17 0.46
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (44 bp):
TGAGCCTCTATTTACATGAGCCTATTTAAATTTTCAAAAGTCAC
Found at i:10445613 original size:15 final size:16
Alignment explanation
Indices: 10445593--10445628 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
10445583 AAGGCACTCA
10445593 TTTTGTA-TTTTATTT
1 TTTTGTATTTTTATTT
10445608 TTTTGTATTTTTTATTT
1 TTTTGTA-TTTTTATTT
10445625 TTTT
1 TTTT
10445629 TCTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
17 12 0.63
ACGTcount: A:0.11, C:0.00, G:0.06, T:0.83
Consensus pattern (16 bp):
TTTTGTATTTTTATTT
Found at i:10448085 original size:38 final size:38
Alignment explanation
Indices: 10447998--10448086 Score: 160
Period size: 38 Copynumber: 2.3 Consensus size: 38
10447988 CCACTATGAG
*
10447998 GCAAATGTCTTCTCTTAAAATAATGATGCAAATGAAAT
1 GCAAATGTCTTTTCTTAAAATAATGATGCAAATGAAAT
*
10448036 GCAAATGTCTTTTCTTAAAATGATGATGCAAATGAAAT
1 GCAAATGTCTTTTCTTAAAATAATGATGCAAATGAAAT
10448074 GCAAATGTCTTTT
1 GCAAATGTCTTTT
10448087 ACAAAAATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (38 bp):
GCAAATGTCTTTTCTTAAAATAATGATGCAAATGAAAT
Found at i:10448103 original size:38 final size:38
Alignment explanation
Indices: 10447998--10448103 Score: 108
Period size: 38 Copynumber: 2.8 Consensus size: 38
10447988 CCACTATGAG
* * * **
10447998 GCAAATGTCTTCTCTTAAAATAATGATGCAAATGAAAT
1 GCAAATGTCTTTTCTAAAAATGACAATGCAAATGAAAT
* **
10448036 GCAAATGTCTTTTCTTAAAATGATGATGCAAATGAAAT
1 GCAAATGTCTTTTCTAAAAATGACAATGCAAATGAAAT
10448074 GCAAATGTCTTTTAC-AAAAAT-ACCAATGCA
1 GCAAATGTCTTTT-CTAAAAATGA-CAATGCA
10448104 TACATTCTTA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
37 1 0.02
38 59 0.97
39 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (38 bp):
GCAAATGTCTTTTCTAAAAATGACAATGCAAATGAAAT
Found at i:10459939 original size:18 final size:18
Alignment explanation
Indices: 10459913--10459947 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10459903 CATTTAACGA
* *
10459913 TTTGTAAAATAATATGTT
1 TTTGAAAAATAACATGTT
10459931 TTTGAAAAATAACATGT
1 TTTGAAAAATAACATGT
10459948 CAAATTCCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (18 bp):
TTTGAAAAATAACATGTT
Found at i:10463605 original size:52 final size:53
Alignment explanation
Indices: 10463548--10463654 Score: 146
Period size: 53 Copynumber: 2.0 Consensus size: 53
10463538 ATTGTTTATT
* * * *
10463548 TTATAAGTTTTATTTCTAAA-TTTTCA-CTATTTGGATCTAATTTAGAAATATC
1 TTATAAGTTTCATTTCTAAATTTTTCACCT-TTTGAACCAAATTTAGAAATATC
*
10463600 TTATAAGTTTCATTTTTAAATTTTTCACCTTTTGAACCAAATTTAGAAATATC
1 TTATAAGTTTCATTTCTAAATTTTTCACCTTTTGAACCAAATTTAGAAATATC
10463653 TT
1 TT
10463655 TCCTAAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
52 18 0.38
53 28 0.58
54 2 0.04
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.50
Consensus pattern (53 bp):
TTATAAGTTTCATTTCTAAATTTTTCACCTTTTGAACCAAATTTAGAAATATC
Found at i:10464151 original size:4 final size:4
Alignment explanation
Indices: 10464142--10464180 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
10464132 AATATTTTAA
*
10464142 AAAT AAAT AAAT AAAT AAAC AAA- ACAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAA
10464181 ATGAAAAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 1 0.03
4 30 0.94
5 1 0.03
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:10464650 original size:20 final size:22
Alignment explanation
Indices: 10464609--10464656 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
10464599 AAAGTTGGTC
*
10464609 GAAAATTGCAAAAAGTTAGCCA
1 GAAAATTGCAAAAACTTAGCCA
10464631 -AAAATTGCAAAAACTT-GCCA
1 GAAAATTGCAAAAACTTAGCCA
10464651 GAAAAT
1 GAAAAT
10464657 CGAAATTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (22 bp):
GAAAATTGCAAAAACTTAGCCA
Found at i:10464909 original size:19 final size:19
Alignment explanation
Indices: 10464885--10464921 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10464875 CTATGTGCTC
*
10464885 TATGTTCACTCTTGATTAT
1 TATGTTCACTATTGATTAT
*
10464904 TATGTTTACTATTGATTA
1 TATGTTCACTATTGATTA
10464922 GACCAAGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.54
Consensus pattern (19 bp):
TATGTTCACTATTGATTAT
Found at i:10465413 original size:4 final size:4
Alignment explanation
Indices: 10465404--10465493 Score: 58
Period size: 4 Copynumber: 21.8 Consensus size: 4
10465394 TATTTCAAGT
* * * *
10465404 TAAA TAAA TAAA TAAA CAAT TAGAGA TAAA TAAA TAGAA AAAA TTAGA
1 TAAA TAAA TAAA TAAA TAAA TA-A-A TAAA TAAA TA-AA TAAA -TAAA
* * *
10465452 TAAA GAAA AAAA CT-AA TAAA -AAA TAAA TAAA TAGA TAAA TAA
1 TAAA TAAA TAAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
10465494 TCAAATAAGT
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
3 4 0.06
4 53 0.80
5 7 0.11
6 2 0.03
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:10465434 original size:26 final size:24
Alignment explanation
Indices: 10465404--10465451 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
10465394 TATTTCAAGT
10465404 TAAATAAATAAATAAACAATTAGAGA
1 TAAATAAATAAA-AAA-AATTAGAGA
*
10465430 TAAATAAATAGAAAAAATTAGA
1 TAAATAAATAAAAAAAATTAGA
10465452 TAAAGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (24 bp):
TAAATAAATAAAAAAAATTAGAGA
Found at i:10465574 original size:7 final size:7
Alignment explanation
Indices: 10465517--10465591 Score: 55
Period size: 7 Copynumber: 10.3 Consensus size: 7
10465507 ATATAAGTGG
10465517 ATAAAA-
1 ATAAAAT
10465523 ATAAAGAT
1 ATAAA-AT
10465531 A-AAAAT
1 ATAAAAT
10465537 CATAAAAT
1 -ATAAAAT
* *
10465545 AGAAAAC
1 ATAAAAT
10465552 ATAAAAACCT
1 AT-AAAA--T
*
10465562 AAAAAAT
1 ATAAAAT
*
10465569 GTAAAAT
1 ATAAAAT
10465576 ATAAAAT
1 ATAAAAT
10465583 ATAAAAT
1 ATAAAAT
10465590 AT
1 AT
10465592 TTTAGATAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
6 7 0.13
7 32 0.59
8 10 0.19
9 4 0.07
10 1 0.02
ACGTcount: A:0.69, C:0.05, G:0.04, T:0.21
Consensus pattern (7 bp):
ATAAAAT
Found at i:10470261 original size:21 final size:21
Alignment explanation
Indices: 10470222--10470262 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10470212 AACAAAAAAA
* *
10470222 TCAAAATTTTTTGAGAAATTC
1 TCAAAATTTTTTAAAAAATTC
*
10470243 TCAAATTTTTTTAAAAAATT
1 TCAAAATTTTTTAAAAAATT
10470263 TCCAAAAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (21 bp):
TCAAAATTTTTTAAAAAATTC
Found at i:10470317 original size:24 final size:25
Alignment explanation
Indices: 10470289--10470347 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
10470279 TTTTATTTTC
10470289 TTTTTTATAAAAA-AAATAA-AATT
1 TTTTTTATAAAAATAAATAACAATT
*
10470312 TATTTTTA-AAAAATATATAACAATT
1 T-TTTTTATAAAAATAAATAACAATT
10470337 TTTTTTATAAA
1 TTTTTTATAAA
10470348 TACTAAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 6 0.19
24 17 0.55
25 8 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TTTTTTATAAAAATAAATAACAATT
Found at i:10472682 original size:17 final size:17
Alignment explanation
Indices: 10472656--10472693 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
10472646 GAAAATAAAA
10472656 ATTA-TTATTT-TTGTTT
1 ATTATTTATTTATT-TTT
10472672 ATTATTTATTTATTTTT
1 ATTATTTATTTATTTTT
10472689 ATTAT
1 ATTAT
10472694 AAAAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 14 0.70
18 2 0.10
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTATTTATTTATTTTT
Found at i:10472913 original size:11 final size:11
Alignment explanation
Indices: 10472897--10472941 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
10472887 AAAGATTTTT
10472897 TAAAATAAAAA
1 TAAAATAAAAA
*
10472908 TCAAATCAAAAA
1 TAAAAT-AAAAA
10472920 TAAAATAAAAA
1 TAAAATAAAAA
10472931 TGAAAA-AAAAA
1 T-AAAATAAAAA
10472942 ACCTATGATC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 16 0.53
12 14 0.47
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:10472941 original size:23 final size:23
Alignment explanation
Indices: 10472897--10472942 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
10472887 AAAGATTTTT
**
10472897 TAAAATAAAAATCAAATCAAAAA
1 TAAAATAAAAATCAAAAAAAAAA
*
10472920 TAAAATAAAAATGAAAAAAAAAA
1 TAAAATAAAAATCAAAAAAAAAA
10472943 CCTATGATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.15
Consensus pattern (23 bp):
TAAAATAAAAATCAAAAAAAAAA
Found at i:10474726 original size:120 final size:120
Alignment explanation
Indices: 10474172--10474968 Score: 420
Period size: 120 Copynumber: 6.7 Consensus size: 120
10474162 TGAACTGAGC
* * * * * ** *
10474172 CAAGATCGAATGATCGAGATAAAA-TCATGAGTCTAAAGATAAAGCGACTAAGATCGAGTTGAGA
1 CAAGATCAAATGATCGAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAAGG
* ** * * * ** * * * *
10474236 TCGAAAATAACTGA-TTGAGATAAAACCATGAATCAAGCAAATGATCTGAACGAAGC
66 TCGAAAATGACTGACCAG-GATGAAATCACGAATCAAAAAAATGATTTGGATGAA-T
* * * * ** * * ** * **
10474292 CAAAATCGAATGACCGAGATAAAAC-CACAAGTTTAAAGATAAAGCGATTAGGACCGAGTTGAGG
1 CAAGATCAAATGATCGAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAAGG
* * * * *
10474356 TCGAAGATGACTGATCAAGATGAAATCACAAATCAAAAAAATGATTTGGATGGAGT
66 TCGAAAATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGAT-GAAT
* * * * ** * * * *
10474412 CGAGATCAAAAGATCAAGACGAAA-TTGTGAGTCTAAAGATAAAATGATCAGGACCGAGTCGAGG
1 CAAGATCAAATGATCGAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAAGG
* * * * ** * * *
10474476 TTGAAAATGATTAACTAGGACAAAATCGCGAATCAAAAAAATGATTTGGATGGAG
66 TCGAAAATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGATGAAT
* * * * * * *
10474531 CTGAGATTAAATGATCGAGACAGAAC-CATGAATCTAAAGATAAAACGACCAAAACTGAGTTGAA
1 C-AAGATCAAATGATCGAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAG-TCAA
* * *
10474595 -GT-AAAAGATGACTGACCAGGATGAAATCATGAATCAAAAAAATGATTTGGACAGAAT
64 GGTCGAAA-ATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGA-TGAAT
* * *
10474652 CAAGATCAAATGATTGGGACAAAACTGC-T-AGTCTAAAGATAAAACGACCAAGACCAAGTCAAG
1 CAAGATCAAATGATCGAGACAAAACT-CATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAAG
* * ** * * * * * *
10474715 ATCGAAAATGACTGACCGGGACAAAACCATGAATCAAGAAAATGATCTAGATGAAGC
65 GTCGAAAATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGATGAA-T
* * ** * * ** *
10474772 CAAGAT-ATAAT-AACTGGGATGAAA-TCGTGAGTCTAAAGATAAAACGATCAAGATTGAGTCGA
1 CAAGATCA-AATGATC-GAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAA
* ** * * *
10474834 GGTCGAATATGACTGACCAAAATGAAATCACGAATCAAGAAAAT-ATTTGGATAAAGC
64 GGTCGAAAATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGATGAA-T
* * * * * ** **
10474891 CAAAATTAAATGATCGAGATGAAAA-T-ATCAAGTCTAAAGATAAAACAACCAAGATTGAGTTGA
1 CAAGATCAAATGATCGAGA-CAAAACTCAT-GAGTCTAAAGATAAAACGACCAAGACCGAGTCAA
10474954 GGTCG-AAATGACTGA
64 GGTCGAAAATGACTGA
10474969 GTGGAATGAA
Statistics
Matches: 520, Mismatches: 135, Indels: 45
0.74 0.19 0.06
Matches are distributed among these distances:
118 1 0.00
119 46 0.09
120 461 0.89
121 11 0.02
122 1 0.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (120 bp):
CAAGATCAAATGATCGAGACAAAACTCATGAGTCTAAAGATAAAACGACCAAGACCGAGTCAAGG
TCGAAAATGACTGACCAGGATGAAATCACGAATCAAAAAAATGATTTGGATGAAT
Found at i:10475352 original size:17 final size:17
Alignment explanation
Indices: 10475303--10475355 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
10475293 AAAGATTCGT
*
10475303 AAGATTTCAGGTTTCGCA
1 AAGATTTTAGG-TTCGCA
**
10475321 AA-AGTTTTAAATTCGCA
1 AAGA-TTTTAGGTTCGCA
10475338 AAGATTTTAGGTTCGCA
1 AAGATTTTAGGTTCGCA
10475355 A
1 A
10475356 GGATGAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 21 0.75
18 7 0.25
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (17 bp):
AAGATTTTAGGTTCGCA
Found at i:10476638 original size:23 final size:24
Alignment explanation
Indices: 10476612--10476662 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
10476602 TTTACTTCTC
10476612 TTTTTTGTTT-CTTTTTTCC-CTTT
1 TTTTTTGTTTGC-TTTTTCCTCTTT
10476635 TTTTTTGTTTGCTTTTTCCTCTTT
1 TTTTTTGTTTGCTTTTTCCTCTTT
10476659 TTTT
1 TTTT
10476663 GCATACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.78
Consensus pattern (24 bp):
TTTTTTGTTTGCTTTTTCCTCTTT
Found at i:10479961 original size:39 final size:41
Alignment explanation
Indices: 10479879--10479964 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 41
10479869 TATATACAAT
* * * *
10479879 AAATAAATAATTGAGCAAGTATAAGTAATGAAAAAAAGTAAAA
1 AAATAAATAAGTAAACAAGTATAAGCAATG--AAAAAGTAAAA
10479922 AAATAAATAAGTAAACAAGTATAAGCAATG-AAAAG-AAAA
1 AAATAAATAAGTAAACAAGTATAAGCAATGAAAAAGTAAAA
10479961 AAAT
1 AAAT
10479965 CTCAAATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 8 0.21
40 5 0.13
43 26 0.67
ACGTcount: A:0.65, C:0.03, G:0.13, T:0.19
Consensus pattern (41 bp):
AAATAAATAAGTAAACAAGTATAAGCAATGAAAAAGTAAAA
Found at i:10480839 original size:7 final size:6
Alignment explanation
Indices: 10480791--10480840 Score: 52
Period size: 5 Copynumber: 8.5 Consensus size: 6
10480781 AGATTTTTTT
*
10480791 AAATAA AAAT-A AAAT-A AAATAA AATTTAA AAAT-A AAATAA AAATGAA
1 AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA AAATAA AAAT-AA
10480838 AAA
1 AAA
10480841 AAGAAACTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 15 0.39
6 13 0.34
7 10 0.26
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:10480839 original size:18 final size:17
Alignment explanation
Indices: 10480791--10480840 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
10480781 AGATTTTTTT
10480791 AAATAAAAAT-AAAATA
1 AAATAAAAATAAAAATA
*
10480807 AAATAAAATTTAAAAATA
1 AAATAAAA-ATAAAAATA
10480825 AAATAAAAATGAAAAA
1 AAATAAAAAT-AAAAA
10480841 AAGAAACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 8 0.28
17 2 0.07
18 19 0.66
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAATAAAAATAAAAATA
Found at i:10481728 original size:3 final size:3
Alignment explanation
Indices: 10481720--10481816 Score: 51
Period size: 3 Copynumber: 33.7 Consensus size: 3
10481710 AAGAGGAAAA
* * *
10481720 AAT AAT AAT AAT ATAT TAT AGT -AT CAT AAT AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
10481764 AAT GAT -AT AGT -AT ACT -AT AAT ATT AGT AAT AAT AAT AAA AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
10481809 AAA AAT AA
1 AAT AAT AA
10481817 AATTAATCTG
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
2 7 0.10
3 60 0.87
4 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:10481772 original size:38 final size:39
Alignment explanation
Indices: 10481720--10481806 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 39
10481710 AAGAGGAAAA
* * *
10481720 AATAATAATAATATATTATAGTATCATAATAATAAT-AT
1 AATAATAATAATATAGTATACTATAATAATAATAATAAT
* * *
10481758 AATAATAATGATATAGTATACTATAATATTAGTAATAAT
1 AATAATAATAATATAGTATACTATAATAATAATAATAAT
*
10481797 AATAAAAATA
1 AATAATAATA
10481807 GTAAAAATAA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 30 0.75
39 10 0.25
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (39 bp):
AATAATAATAATATAGTATACTATAATAATAATAATAAT
Found at i:10482503 original size:3 final size:3
Alignment explanation
Indices: 10482495--10482545 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
10482485 AAAAATTACA
10482495 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10482543 AAT
1 AAT
10482546 CTATTCTTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10483281 original size:3 final size:3
Alignment explanation
Indices: 10483234--10483262 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10483224 GAACTAAAAT
10483234 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10483263 TAAATAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10483522 original size:29 final size:29
Alignment explanation
Indices: 10483467--10483596 Score: 125
Period size: 29 Copynumber: 4.4 Consensus size: 29
10483457 AATTCATTTA
* * * * *
10483467 AATATAATATAAATAAATATAAATAATCTG
1 AATAT-ATAAAAATAAACACAATTAATATG
* *
10483497 AATATATAAAAATAAATACGATTAATATG
1 AATATATAAAAATAAACACAATTAATATG
* * *
10483526 AATTTATACAAATATACACAATTAATATG
1 AATATATAAAAATAAACACAATTAATATG
* * *
10483555 AATTTATACAAATATACACAATTAATATG
1 AATATATAAAAATAAACACAATTAATATG
10483584 AATATATATAAAA
1 AATATATA-AAAA
10483597 ATATAATTAA
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 79 0.91
30 8 0.09
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (29 bp):
AATATATAAAAATAAACACAATTAATATG
Found at i:10483568 original size:58 final size:60
Alignment explanation
Indices: 10483490--10483601 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 60
10483480 TAAATATAAA
* * * *
10483490 TAATCTGAATATATAAAAATAAATACGATTAATATGAAT-T-TATACAAATATACACAAT
1 TAATATGAATATATAAAAATAAACACAATTAATATGAATATATATAAAAATATACACAAT
* * *
10483548 TAATATGAATTTATACAAATATACACAATTAATATGAATATATATAAAAATATA
1 TAATATGAATATATAAAAATAAACACAATTAATATGAATATATATAAAAATATA
10483602 ATTAAAATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 33 0.73
59 1 0.02
60 11 0.24
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (60 bp):
TAATATGAATATATAAAAATAAACACAATTAATATGAATATATATAAAAATATACACAAT
Found at i:10483846 original size:19 final size:19
Alignment explanation
Indices: 10483819--10483867 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
10483809 TAAAGAATAA
*
10483819 AATAATAATATATAAAACT
1 AATATTAATATATAAAACT
* * *
10483838 AATATTAATATTTAATATT
1 AATATTAATATATAAAACT
*
10483857 TATATTAATAT
1 AATATTAATAT
10483868 TTATATTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
AATATTAATATATAAAACT
Found at i:10483868 original size:19 final size:18
Alignment explanation
Indices: 10483839--10483898 Score: 86
Period size: 18 Copynumber: 3.3 Consensus size: 18
10483829 TATAAAACTA
10483839 ATATTAATATTTAATATTT
1 ATATTAATATTT-ATATTT
10483858 ATATTAATATTTATATTT
1 ATATTAATATTTATATTT
* *
10483876 ATATTTATA-TTGTATTT
1 ATATTAATATTTATATTT
10483893 ATATTA
1 ATATTA
10483899 TTAATATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
17 12 0.32
18 14 0.37
19 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATATTAATATTTATATTT
Found at i:10483897 original size:6 final size:6
Alignment explanation
Indices: 10483839--10483897 Score: 75
Period size: 6 Copynumber: 9.8 Consensus size: 6
10483829 TATAAAACTA
* *
10483839 ATATTA ATATTT AATATTT ATATTA ATATTT ATATTT ATATTT ATA-TT
1 ATATTT ATATTT -ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT
*
10483887 GTATTT ATATT
1 ATATTT ATATT
10483898 ATTAATATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 4 0.09
6 36 0.78
7 6 0.13
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (6 bp):
ATATTT
Found at i:10484965 original size:22 final size:22
Alignment explanation
Indices: 10484939--10484981 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10484929 TGTATATTTA
10484939 TATTTGTA-TCTCTAAAATTAAG
1 TATTTGTATTC-CTAAAATTAAG
10484961 TATTTGTATTCCTAAAATTAA
1 TATTTGTATTCCTAAAATTAA
10484982 AAAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (22 bp):
TATTTGTATTCCTAAAATTAAG
Found at i:10491874 original size:27 final size:29
Alignment explanation
Indices: 10491843--10491906 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
10491833 TACTCATGAT
10491843 ACAATGAA-CTTT-CTTTTTTCTATTAAA
1 ACAATGAACCTTTCCTTTTTTCTATTAAA
10491870 ACAATGAACCTTTCCTTTTTTCTATTAAA
1 ACAATGAACCTTTCCTTTTTTCTATTAAA
10491899 ACAATGAA
1 ACAATGAA
10491907 AAAACATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 8 0.23
28 4 0.11
29 23 0.66
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.42
Consensus pattern (29 bp):
ACAATGAACCTTTCCTTTTTTCTATTAAA
Found at i:10491916 original size:28 final size:29
Alignment explanation
Indices: 10491856--10491916 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
10491846 ATGAACTTTC
**** *
10491856 TTTTTTCTATTAAAACAATGAACCTTTCC
1 TTTTTTCTATTAAAACAATGAACAAAACA
10491885 TTTTTTCTATTAAAACAATGAA-AAAACA
1 TTTTTTCTATTAAAACAATGAACAAAACA
10491913 TTTT
1 TTTT
10491917 AGGGTAGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (29 bp):
TTTTTTCTATTAAAACAATGAACAAAACA
Found at i:10493098 original size:129 final size:129
Alignment explanation
Indices: 10492865--10493119 Score: 402
Period size: 129 Copynumber: 2.0 Consensus size: 129
10492855 GAATCAATAA
* *
10492865 AATTTTGAAATGTATATATGATAGCTTCCGAGTGGTTTATAATTTCATGCTCATAAAGCAACAAT
1 AATTTTGAAATGCATATATGATAGCTTCCGAGTGGTTTATAATTTCAAGCTCATAAAGCAACAAT
* **
10492930 TCCACGAACACATTCCACATGTCCATCAACCAACATATTCAACAAAGATAAAAAAGCTTCCGAG
66 TCCACAAACACATTCCACACATCCATCAACCAACATATTCAACAAAGATAAAAAAGCTTCCGAG
* * *
10492994 AATTTTGAAATGCATATATGATGGCTTCTGAGTGGTTTATACTTTCAAGCTCATAAAGCAACAAT
1 AATTTTGAAATGCATATATGATAGCTTCCGAGTGGTTTATAATTTCAAGCTCATAAAGCAACAAT
* * * *
10493059 TCCACAAACACATTCCACACATCTATCAACCAACTTATTCAACAAGGATACAAAAGCTTCC
66 TCCACAAACACATTCCACACATCCATCAACCAACATATTCAACAAAGATAAAAAAGCTTCC
10493120 AAGTTGTTTA
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 114 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (129 bp):
AATTTTGAAATGCATATATGATAGCTTCCGAGTGGTTTATAATTTCAAGCTCATAAAGCAACAAT
TCCACAAACACATTCCACACATCCATCAACCAACATATTCAACAAAGATAAAAAAGCTTCCGAG
Found at i:10495557 original size:16 final size:16
Alignment explanation
Indices: 10495536--10495571 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
10495526 GTACTAATAT
10495536 GTTGGCTATAACTGTG
1 GTTGGCTATAACTGTG
*
10495552 GTTGGCTGTAACTGTG
1 GTTGGCTATAACTGTG
10495568 GTTG
1 GTTG
10495572 ATGGTGAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.11, G:0.36, T:0.39
Consensus pattern (16 bp):
GTTGGCTATAACTGTG
Found at i:10498162 original size:45 final size:45
Alignment explanation
Indices: 10498033--10498173 Score: 246
Period size: 45 Copynumber: 3.1 Consensus size: 45
10498023 AAATGCAGAA
*
10498033 GAGTTACTGAAAGATAGAGAATAAGTCAGTAGGTTGATGGTTGAT
1 GAGTTACTGAAAGATAGAGAACAAGTCAGTAGGTTGATGGTTGAT
10498078 GAGTTACTGAAAGATAAGAGAACAAGTCAGTAGGTTGATGGTTGAT
1 GAGTTACTGAAAGAT-AGAGAACAAGTCAGTAGGTTGATGGTTGAT
*
10498124 GAGTTACTGAAAGATAGAAAACAAGTCAGTAGGTTGATGGTTGAT
1 GAGTTACTGAAAGATAGAGAACAAGTCAGTAGGTTGATGGTTGAT
*
10498169 TAGTT
1 GAGTT
10498174 GAATAAAGCT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
45 48 0.52
46 44 0.48
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (45 bp):
GAGTTACTGAAAGATAGAGAACAAGTCAGTAGGTTGATGGTTGAT
Found at i:10502225 original size:22 final size:22
Alignment explanation
Indices: 10502197--10502242 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
10502187 AAAATGAAAA
*
10502197 CATTGAAAATTTTTGGATAAAG
1 CATTGAAAAATTTTGGATAAAG
10502219 CATTGAAAAATTTTGGATAAAG
1 CATTGAAAAATTTTGGATAAAG
10502241 CA
1 CA
10502243 ATCAGTGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33
Consensus pattern (22 bp):
CATTGAAAAATTTTGGATAAAG
Found at i:10503716 original size:14 final size:14
Alignment explanation
Indices: 10503697--10503726 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10503687 AAATAAGTGA
10503697 AGAAAATGAAGATG
1 AGAAAATGAAGATG
10503711 AGAAAATGAAGATG
1 AGAAAATGAAGATG
10503725 AG
1 AG
10503727 CATGAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.30, T:0.13
Consensus pattern (14 bp):
AGAAAATGAAGATG
Found at i:10505327 original size:17 final size:18
Alignment explanation
Indices: 10505299--10505332 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
10505289 ATTATAATTA
10505299 AAATTAAAATTTATTTAT
1 AAATTAAAATTTATTTAT
10505317 AAATT-AAATTTATTTA
1 AAATTAAAATTTATTTA
10505333 ATTAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTAAAATTTATTTAT
Found at i:10506027 original size:13 final size:13
Alignment explanation
Indices: 10506009--10506039 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10505999 AACTTAACTC
10506009 AATTATTTTAAAT
1 AATTATTTTAAAT
*
10506022 AATTATTTTATAT
1 AATTATTTTAAAT
10506035 AATTA
1 AATTA
10506040 CCATGTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATTATTTTAAAT
Found at i:10511364 original size:10 final size:9
Alignment explanation
Indices: 10511306--10511364 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
10511296 TTGAATTACT
10511306 AAATAAATA
1 AAATAAATA
10511315 AAA-AAACTTA
1 AAATAAA--TA
*
10511325 AAAT-TATA
1 AAATAAATA
*
10511333 AGATAAATA
1 AAATAAATA
10511342 AAATAAATA
1 AAATAAATA
*
10511351 AAATGAAATG
1 AAAT-AAATA
10511361 AAAT
1 AAAT
10511365 CAAAAAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
8 8 0.20
9 18 0.45
10 14 0.35
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (9 bp):
AAATAAATA
Found at i:10511395 original size:8 final size:8
Alignment explanation
Indices: 10511379--10511415 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
10511369 AAAGAAAATG
*
10511379 AAAATGAA
1 AAAAAGAA
10511387 AAAAAGAA
1 AAAAAGAA
10511395 AAAAAGAA
1 AAAAAGAA
10511403 AAAAAGAA
1 AAAAAGAA
10511411 AAAAA
1 AAAAA
10511416 AAACCTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (8 bp):
AAAAAGAA
Found at i:10512305 original size:3 final size:3
Alignment explanation
Indices: 10512297--10512375 Score: 78
Period size: 3 Copynumber: 28.0 Consensus size: 3
10512287 GGATAATGAA
* *
10512297 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT CAT -AT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
10512343 AAT AAT -AT CAT -AT TAT TAT AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10512376 GTACAATATA
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
2 10 0.14
3 59 0.86
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (3 bp):
AAT
Found at i:10512343 original size:19 final size:19
Alignment explanation
Indices: 10512298--10512369 Score: 99
Period size: 19 Copynumber: 3.7 Consensus size: 19
10512288 GATAATGAAA
* *
10512298 ATAATAATAATAATAATAATA
1 ATAATAATAAT-ATCAT-ATT
10512319 ATAATAATAATATCATATT
1 ATAATAATAATATCATATT
10512338 ATAATAATAATATCATATT
1 ATAATAATAATATCATATT
*
10512357 ATTATAATAATAT
1 ATAATAATAATAT
10512370 AATAATGTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
19 33 0.69
20 4 0.08
21 11 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAATAATAATATCATATT
Found at i:10512371 original size:5 final size:5
Alignment explanation
Indices: 10512301--10512441 Score: 55
Period size: 5 Copynumber: 28.2 Consensus size: 5
10512291 AATGAAAATA
*
10512301 ATAAT AATAAT AATAAT AATAAT AATAAT ATCAT AT--T ATAAT AATAAT
1 ATAAT -ATAAT -ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT
* * * * *
10512349 ATCAT AT--T ATTAT AATAAT ATAAT A-ATGT ACAAT ATAAT -TACT ATAAT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT
* * * * *
10512397 AATACT ATACT ATAAT AT--T ATATT ATAAT ATATT ATACT ATAAT A
1 -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
10512442 ACATGCTATA
Statistics
Matches: 109, Mismatches: 14, Indels: 25
0.74 0.09 0.17
Matches are distributed among these distances:
3 9 0.08
4 4 0.04
5 59 0.54
6 37 0.34
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:10514037 original size:41 final size:41
Alignment explanation
Indices: 10513988--10514071 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
10513978 TAAAAAAACA
10513988 AAAGGATACATTTTTCTTTTTCTTTAAAAAAGATTTCTTTT
1 AAAGGATACATTTTTCTTTTTCTTTAAAAAAGATTTCTTTT
10514029 AAAGGATACATTTTTCTTTTTCTTTAAAAAAGATTTCTTTT
1 AAAGGATACATTTTTCTTTTTCTTTAAAAAAGATTTCTTTT
10514070 AA
1 AA
10514072 TTAAATCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (41 bp):
AAAGGATACATTTTTCTTTTTCTTTAAAAAAGATTTCTTTT
Found at i:10516392 original size:15 final size:14
Alignment explanation
Indices: 10516381--10516422 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
10516371 CAAAAAAATG
10516381 AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAC
*
10516395 AAAACAAAGAAAAAC
1 AAAA-AAAAAAAAAC
*
10516410 AAAAAACAAAAAA
1 AAAAAAAAAAAAA
10516423 TGGGATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:10516406 original size:23 final size:22
Alignment explanation
Indices: 10516371--10516422 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
10516361 AAGAAAGTTG
10516371 CAAAAAAATGAAAAAAAAAAAAA
1 CAAAAAAATG-AAAAAAAAAAAA
*
10516394 CAAAACAAA-GAAAAACAAAAAA
1 CAAAA-AAATGAAAAAAAAAAAA
10516416 CAAAAAA
1 CAAAAAA
10516423 TGGGATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 2 0.07
22 16 0.59
23 6 0.22
24 3 0.11
ACGTcount: A:0.85, C:0.10, G:0.04, T:0.02
Consensus pattern (22 bp):
CAAAAAAATGAAAAAAAAAAAA
Found at i:10519046 original size:16 final size:16
Alignment explanation
Indices: 10519025--10519063 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10519015 ATGATTATAA
*
10519025 TATTAATATTATTAAT
1 TATTAATAATATTAAT
* *
10519041 TATTAAGAATATTTAT
1 TATTAATAATATTAAT
10519057 TATTAAT
1 TATTAAT
10519064 TTTTTTATAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
TATTAATAATATTAAT
Found at i:10519509 original size:19 final size:21
Alignment explanation
Indices: 10519485--10519533 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
10519475 TAAAGAATTA
10519485 AAATATTATAAAT-TATTT-T
1 AAATATTATAAATATATTTAT
*
10519504 AAATATAATAAATATATTTAT
1 AAATATTATAAATATATTTAT
*
10519525 AATTATTAT
1 AAATATTAT
10519534 TTATTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.48
20 5 0.20
21 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATATTATAAATATATTTAT
Found at i:10519978 original size:4 final size:4
Alignment explanation
Indices: 10519932--10520009 Score: 52
Period size: 4 Copynumber: 19.2 Consensus size: 4
10519922 TGGAAACTGC
* * * **
10519932 ATTT ATCT ATTT TTTT AATTT -TTT A-TT ATTC ATTT GCTT ATTT ATTT
1 ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
* *
10519979 ATTT GTTT ATTTT ATTT ATTT GTTTT ATTT A
1 ATTT ATTT A-TTT ATTT ATTT -ATTT ATTT A
10520010 AATTTTTTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
3 6 0.11
4 39 0.71
5 10 0.18
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:10519994 original size:13 final size:13
Alignment explanation
Indices: 10519932--10520009 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 13
10519922 TGGAAACTGC
*
10519932 ATTTATCTATTTT
1 ATTTATTTATTTT
*
10519945 -TTTAATT-TTTT
1 ATTTATTTATTTT
*
10519956 A-TTATTCA-TTT
1 ATTTATTTATTTT
**
10519967 GCTTATTTA-TTT
1 ATTTATTTATTTT
*
10519979 ATTTGTTTATTTT
1 ATTTATTTATTTT
*
10519992 ATTTATTTGTTTT
1 ATTTATTTATTTT
10520005 ATTTA
1 ATTTA
10520010 AATTTTTTAA
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
11 11 0.22
12 20 0.40
13 19 0.38
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.72
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:10519994 original size:17 final size:17
Alignment explanation
Indices: 10519957--10520008 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 17
10519947 TAATTTTTTA
* *
10519957 TTATTCATTTGCTTA-T
1 TTATTTATTTGTTTATT
10519973 TTATTTATTTGTTTATT
1 TTATTTATTTGTTTATT
10519990 TTATTTATTTGTTTTATT
1 TTATTTATTTG-TTTATT
10520008 T
1 T
10520009 AAATTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 13 0.41
17 12 0.38
18 7 0.22
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.73
Consensus pattern (17 bp):
TTATTTATTTGTTTATT
Found at i:10520975 original size:20 final size:20
Alignment explanation
Indices: 10520939--10520980 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
10520929 TAATATATTG
10520939 GTTTTAATTTTTAATTT-TA
1 GTTTTAATTTTTAATTTCTA
* *
10520958 GTTTTTATTTGTTCATTTCTA
1 GTTTTAATTT-TTAATTTCTA
10520979 GT
1 GT
10520981 AAGAAACTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.19, C:0.05, G:0.10, T:0.67
Consensus pattern (20 bp):
GTTTTAATTTTTAATTTCTA
Found at i:10523629 original size:18 final size:18
Alignment explanation
Indices: 10523608--10523661 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
10523598 TTTTTAATAG
*
10523608 AAAATTGTTTTTAAAATT
1 AAAATTATTTTTAAAATT
** *
10523626 AAAATTAAGTTAAAAATT
1 AAAATTATTTTTAAAATT
*
10523644 TAAATTATTTTTAAAATT
1 AAAATTATTTTTAAAATT
10523662 CAATATGATT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (18 bp):
AAAATTATTTTTAAAATT
Done.