Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 71 of 160
Found at i:14746204 original size:106 final size:106
Alignment explanation
Indices: 14745994--14746253 Score: 283
Period size: 106 Copynumber: 2.5 Consensus size: 106
14745984 TTACAAATCC
* * *
14745994 TATTCGAAGGACTTAGAAATTATGCTTAA-AGGTCTTACAAATCTCAAAATTAAAATAAATTCAG
1 TATTCGGAGGTCTTAGAGATTATGC-TAAGAGGTCTTACAAATCTCAAAATTAAAATAAATTCAG
* * ** * *
14746058 TTTGGAAGACCTACGAATCTTGCCCGGAGGATTTATAGATTA
65 CTTGGAAGACCTACGAATCTTGCCCGAAAAACTTACAGATTA
** *
14746100 TATTCGGAGGTCTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATTAAAATAGATTCAGC
1 TATTCGGAGGTCTTAGAGATTATGCTAAGAGGTCTTACAAATCTCAAAATTAAAATAAATTCAGC
* * **
14746165 TT-GAGAGACTTACGAATTTTGCTTGAAAAACTTACAGATTA
66 TTGGA-AGACCTACGAATCTTGCCCGAAAAACTTACAGATTA
** * * * *
14746206 TGCTC-GAAGTCTTAAAGATTATGCTAAGAGGTCTTATAAATCTAAAAA
1 TATTCGGAGGTCTTAGAGATTATGCTAAGAGGTCTTACAAATCTCAAAA
14746254 AATCTTTGAA
Statistics
Matches: 128, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
105 40 0.31
106 88 0.69
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (106 bp):
TATTCGGAGGTCTTAGAGATTATGCTAAGAGGTCTTACAAATCTCAAAATTAAAATAAATTCAGC
TTGGAAGACCTACGAATCTTGCCCGAAAAACTTACAGATTA
Found at i:14746502 original size:210 final size:209
Alignment explanation
Indices: 14746107--14746519 Score: 512
Period size: 212 Copynumber: 2.0 Consensus size: 209
14746097 TTATATTCGG
* * * * * *
14746107 AGGTCTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATTAAAATAGATTCAGCTTGAGAG
1 AGGTCTTAGAAATTATGCCCAGAGGTCTTAAAAATCTCAAAATTAAAATAGATTCAACTCGAAAA
** * *
14746172 ACTTACGAATTTTGCTTGAAAAACTTACAGATTATGCTCGAAGTCTTAAAGATTATGCTAAGAGG
66 ACTTACGAATCATGCTTGAAAAACTTACAGATTATGCTCAAAGTCTTAAAGATTATACTAAGA-G
* * *
14746237 TCTTATAAATCTAAAAAAATCTTTGAATGCTTCTTATAATAGAGTCATTGAAACTTT-AAAATTT
130 TCTTACAAATCT-AAAAAATCTTTGAATGCTTCTCATAATAGAGGCATTGAAACTTTGAAAA-TT
14746301 TAAAATGTTTTACCTGA
193 TAAAATGTTTTACCTGA
* * * *
14746318 AGGTCTTGGAAATTATTCCTAGAGGTCTTAAAAAATCTCAAAATTAAAATAGATTTAACTCGAAA
1 AGGTCTTAGAAATTATGCCCAGAGGTCTT-AAAAATCTCAAAATTAAAATAGATTCAACTCGAAA
* * * *
14746383 AACTTATGAATCATG-TCTGAAAGACTTATAGATTATGC-CAAAGGTCTTAGAGATTATACTCGA
65 AACTTACGAATCATGCT-TGAAAAACTTACAGATTATGCTCAAA-GTCTTAAAGATTATACT--A
* *
14746446 AGA-TTTTACAAATCT-CAAAATCTTTGAATGCTTCTCATAATAGAGGCATTGAAACTTTGAAAA
126 AGAGTCTTACAAATCTAAAAAATCTTTGAATGCTTCTCATAATAGAGGCATTGAAACTTTGAAAA
14746509 TTTAAAATGTT
191 TTTAAAATGTT
14746520 AAAATGTTTT
Statistics
Matches: 173, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
210 51 0.29
211 33 0.19
212 85 0.49
214 4 0.02
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (209 bp):
AGGTCTTAGAAATTATGCCCAGAGGTCTTAAAAATCTCAAAATTAAAATAGATTCAACTCGAAAA
ACTTACGAATCATGCTTGAAAAACTTACAGATTATGCTCAAAGTCTTAAAGATTATACTAAGAGT
CTTACAAATCTAAAAAATCTTTGAATGCTTCTCATAATAGAGGCATTGAAACTTTGAAAATTTAA
AATGTTTTACCTGA
Found at i:14747359 original size:59 final size:55
Alignment explanation
Indices: 14747213--14747361 Score: 131
Period size: 53 Copynumber: 2.7 Consensus size: 55
14747203 TTTTTTTATG
* * ** *
14747213 ATGTAGATGTGAATGCAAATGTTTTTCTCATGATGCTTATGCAAGTGCAAATGCA
1 ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCAGATGCAAGTGCAAATGAA
** *** * **
14747268 A-GT-GATGCAAATATGAATGTCTTTTTTTTTATGCAGATGCAAGCAATGCAAATGTAA
1 ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCAGATGCAAG---TGCAAATG-AA
14747325 ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCA
1 ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCA
14747362 CACATAAATA
Statistics
Matches: 67, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
53 28 0.42
54 2 0.03
55 1 0.01
56 8 0.12
57 2 0.03
58 2 0.03
59 24 0.36
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (55 bp):
ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCAGATGCAAGTGCAAATGAA
Found at i:14747422 original size:112 final size:112
Alignment explanation
Indices: 14747213--14747440 Score: 278
Period size: 112 Copynumber: 2.0 Consensus size: 112
14747203 TTTTTTTATG
* ** ** * * *
14747213 ATGTAGATGTGAATGCAAATGTTTTTCTCATGATGCTTATGCAAGTGCAAATGCAAGTGATGCAA
1 ATGTAGATGTGAATGCAAATGTCTTTCTCATGATGCACACACAAATACAAATACAAGTGATGCAA
* * *
14747278 ATATGAATGTCTTTTTTTTTATGCAGATGCAAGCAATGCAAATGTAA
66 ATATAAATGTCTTTTTTTTGATGCAGATGCAAGCAATGCAAATGCAA
* *
14747325 ATGTAGATGTGAATGCAAATGTCTTTCTCATTATGCACACATAAATACAAATACAAGTGATGCAA
1 ATGTAGATGTGAATGCAAATGTCTTTCTCATGATGCACACACAAATACAAATACAAGTGATGCAA
* * ** *
14747390 ATGTAAATGTCTTTTTTTGTGATGCATA-GCAAGTGATGCAATTGCAA
66 ATATAAATGTCTTTTTTT-TGATGCAGATGCAAGCAATGCAAATGCAA
14747437 ATGT
1 ATGT
14747441 TTTTTTTTTT
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 90 0.93
113 7 0.07
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (112 bp):
ATGTAGATGTGAATGCAAATGTCTTTCTCATGATGCACACACAAATACAAATACAAGTGATGCAA
ATATAAATGTCTTTTTTTTGATGCAGATGCAAGCAATGCAAATGCAA
Found at i:14747579 original size:42 final size:42
Alignment explanation
Indices: 14747505--14747679 Score: 156
Period size: 42 Copynumber: 4.2 Consensus size: 42
14747495 CACAAGTATG
* *** * * **
14747505 AATGCGAGTGATACAAATGCAAATATCCTTTTTTATGATGTT
1 AATGCAAGTGATACAAATATGAATGTCTTTTTTTATGATGCA
* *
14747547 AATGTAAGTGATATAAATATGAATGTCTTTTTTTATGATGCA
1 AATGCAAGTGATACAAATATGAATGTCTTTTTTTATGATGCA
* * *
14747589 AATGCAAGTGATACAAA-AGCGAATATCCTTTTTTATGATGCA
1 AATGCAAGTGATACAAATA-TGAATGTCTTTTTTTATGATGCA
* * * * *
14747631 AATGCAAGTGATGCAAATGTGAATGT-TTTTCTTGTGATGTA
1 AATGCAAGTGATACAAATATGAATGTCTTTTTTTATGATGCA
*
14747672 GATGCAAG
1 AATGCAAG
14747680 CGATGTAAAT
Statistics
Matches: 107, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
41 19 0.18
42 88 0.82
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (42 bp):
AATGCAAGTGATACAAATATGAATGTCTTTTTTTATGATGCA
Found at i:14747602 original size:84 final size:83
Alignment explanation
Indices: 14747505--14747693 Score: 225
Period size: 84 Copynumber: 2.3 Consensus size: 83
14747495 CACAAGTATG
* ** * *
14747505 AATGCGAGTGATACAAATGCAAATATCCTTTTTTATGATGTTAATGTAAGTGATATAAATATGAA
1 AATGCAAGTGATACAAATGCAAATATCCTTTTTTATGATGCAAATGCAAGTGATACAAATATGAA
*
14747570 TGTCTTTTTTTATGATGCA
66 TGT-TTTTCTTATGATGCA
* * * *
14747589 AATGCAAGTGATACAAAAGCGAATATCCTTTTTTATGATGCAAATGCAAGTGATGCAAATGTGAA
1 AATGCAAGTGATACAAATGCAAATATCCTTTTTTATGATGCAAATGCAAGTGATACAAATATGAA
* *
14747654 TGTTTTTCTTGTGATGTA
66 TGTTTTTCTTATGATGCA
* * **
14747672 GATGCAAGCGATGTAAATGCAA
1 AATGCAAGTGATACAAATGCAA
14747694 TTGTTTTTCC
Statistics
Matches: 87, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
83 28 0.32
84 59 0.68
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (83 bp):
AATGCAAGTGATACAAATGCAAATATCCTTTTTTATGATGCAAATGCAAGTGATACAAATATGAA
TGTTTTTCTTATGATGCA
Found at i:14747690 original size:41 final size:41
Alignment explanation
Indices: 14747632--14747710 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
14747622 TATGATGCAA
* * *
14747632 ATGCAAGTGATGCAAATGTGAA-TGTTTTTCTTGTGATGTAG
1 ATGCAAGCGATGCAAATG-CAATTGTTTTTCCTGTGATGTAG
*
14747673 ATGCAAGCGATGTAAATGCAATTGTTTTTCCTGTGATG
1 ATGCAAGCGATGCAAATGCAATTGTTTTTCCTGTGATG
14747711 CAAAAACAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 31 0.94
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (41 bp):
ATGCAAGCGATGCAAATGCAATTGTTTTTCCTGTGATGTAG
Found at i:14747818 original size:53 final size:53
Alignment explanation
Indices: 14747765--14747946 Score: 164
Period size: 53 Copynumber: 3.6 Consensus size: 53
14747755 GATGTGAATG
* *
14747765 CAAATGTCTTTCTTATGATGCACATGTAAGTACGAATGTGAGTGATACAAATG
1 CAAATGTCTTTCTTATGATGCACATGCAAGTACGAATGTGAGTGATACAAATA
* * * **
14747818 CAAATGTCTTT-TTTTG-TG---ATGCAAATGCGAATGT-A--GATATGAATA
1 CAAATGTCTTTCTTATGATGCACATGCAAGTACGAATGTGAGTGATACAAATA
* * * * *
14747863 CAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATGCAAATA
1 CAAATGTCTTTCTTATGATGCACATGCAAGTACGAATGTGAGTGATACAAATA
* * *
14747916 CAAATGTCTTTTTTTGTGATGCATATGCAAG
1 CAAATGTC-TTTCTTATGATGCACATGCAAG
14747947 AGATGCAAAT
Statistics
Matches: 97, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
45 17 0.18
46 2 0.02
47 3 0.03
48 13 0.13
50 13 0.13
51 3 0.03
52 4 0.04
53 25 0.26
54 17 0.18
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (53 bp):
CAAATGTCTTTCTTATGATGCACATGCAAGTACGAATGTGAGTGATACAAATA
Found at i:14747914 original size:98 final size:98
Alignment explanation
Indices: 14747749--14747943 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 98
14747739 CTTTTTTTAT
* * * * * * *
14747749 AATGTAGATGTGAATGCAAATGTCTTTCTTATGATGCACATGTAAGTACGAATGTGAGTGATACA
1 AATGTAGATATGAATACAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATACA
*
14747814 AATGCAAATGTCTTTTTTTGTGATGCAAATGCG
66 AATACAAATGTCTTTTTTTGTGATGCAAATGCG
*
14747847 AATGTAGATATGAATACAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATGCA
1 AATGTAGATATGAATACAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATACA
*
14747912 AATACAAATGTCTTTTTTTGTGATGCATATGC
66 AATACAAATGTCTTTTTTTGTGATGCAAATGC
14747944 AAGAGATGCA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (98 bp):
AATGTAGATATGAATACAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATACA
AATACAAATGTCTTTTTTTGTGATGCAAATGCG
Found at i:14747997 original size:128 final size:127
Alignment explanation
Indices: 14747852--14748098 Score: 350
Period size: 128 Copynumber: 1.9 Consensus size: 127
14747842 ATGCGAATGT
* *
14747852 AGATATGAATACAAATGTATTTCTCAAGATGCACATGCAAGTACAAATGTGAGTGATGCAAATAC
1 AGATATGAATACAAATGTATTTCTCAAGATGCACATACAAGTACAAATGTGAGAGATGCAAATAC
* * * *
14747917 AAATGTCTTTTTTTGTGATGCATATGCAAGAGATGCAAATGCGAATGTCTTTTTTTATGATGC
66 AAATGT-TTTTTTTATGATGCAAATGCAAGAGATACAAATGCGAATGTCTATTTTTATGATGC
* * * * * ** *
14747980 AGATATGAATACAAATGTCTTTCTCATGATGTATATATAAGTATGAATGTGAGAGATGCAAATGC
1 AGATATGAATACAAATGTATTTCTCAAGATGCACATACAAGTACAAATGTGAGAGATGCAAATAC
*
14748045 AAATGTTTTTTTTATGATGCAAATGCAAGTGATACAAATGCGAATGTCTATTTT
66 AAATGTTTTTTTTATGATGCAAATGCAAGAGATACAAATGCGAATGTCTATTTT
14748099 GTGATGTAGA
Statistics
Matches: 104, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
127 43 0.41
128 61 0.59
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (127 bp):
AGATATGAATACAAATGTATTTCTCAAGATGCACATACAAGTACAAATGTGAGAGATGCAAATAC
AAATGTTTTTTTTATGATGCAAATGCAAGAGATACAAATGCGAATGTCTATTTTTATGATGC
Found at i:14748174 original size:83 final size:82
Alignment explanation
Indices: 14748034--14748187 Score: 211
Period size: 83 Copynumber: 1.9 Consensus size: 82
14748024 GAATGTGAGA
* * *
14748034 GATGCAAATGCAAATGTTTTTTTTATGATGCAAATGCAAGTGATACAAATGCGAATGTCTATT-T
1 GATGCAAATGCAAATGTTTTTTTAATGATACAAATGCAAGCGATACAAATGCGAATGTCT-TTCT
14748098 TGTGATGTAGATGCAACT
65 TGTGATGTAGATGCAACT
* * * * *
14748116 GATGCAAATGCGAATGTCTTTTTTAATGTTATAGATGTAAGCGATACAAATGCGAATGTCTTTCT
1 GATGCAAATGCAAATGT-TTTTTTAATGATACAAATGCAAGCGATACAAATGCGAATGTCTTTCT
14748181 TGTGATG
65 TGTGATG
14748188 CAAATGTAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 18 0.29
83 44 0.71
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.36
Consensus pattern (82 bp):
GATGCAAATGCAAATGTTTTTTTAATGATACAAATGCAAGCGATACAAATGCGAATGTCTTTCTT
GTGATGTAGATGCAACT
Found at i:14748192 original size:124 final size:124
Alignment explanation
Indices: 14748038--14748263 Score: 285
Period size: 124 Copynumber: 1.8 Consensus size: 124
14748028 GTGAGAGATG
* * * *
14748038 CAAATGCAAATGTTTTTTTTATGATGCAAATGCAAGTGATACAAATGCGAATGTCTAT-TTTGTG
1 CAAATGCAAATGTCTTTCTTATGATGCAAATGCAAGCGATACAAATGCGAATAT-TATCTTTGTG
* *
14748102 ATGTAGATGCAA-CTGATGCAAATGCGAATGTCTTTTTTAATGTTATAGATGTAAGCGATA
65 ATGTAAATGCAATC-GATGCAAATGCAAATGTCTTTTTTAATGTTATAGATGTAAGCGATA
* * * ** * * *
14748162 CAAATGCGAATGTCTTTCTTGTGATGCAAATGTAAGCGATGTAAATGTGAATATTGTCTTTTTGA
1 CAAATGCAAATGTCTTTCTTATGATGCAAATGCAAGCGATACAAATGCGAATATTATCTTTGTGA
*
14748227 TGTAAATGCAATCGATGTAAATGCAAATGTCTTTTTT
66 TGTAAATGCAATCGATGCAAATGCAAATGTCTTTTTT
14748264 CTGATGTAGA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
123 2 0.02
124 82 0.96
125 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (124 bp):
CAAATGCAAATGTCTTTCTTATGATGCAAATGCAAGCGATACAAATGCGAATATTATCTTTGTGA
TGTAAATGCAATCGATGCAAATGCAAATGTCTTTTTTAATGTTATAGATGTAAGCGATA
Found at i:14748269 original size:41 final size:41
Alignment explanation
Indices: 14748034--14748271 Score: 187
Period size: 41 Copynumber: 5.8 Consensus size: 41
14748024 GAATGTGAGA
* * *
14748034 GATGCAAATGCAAATGTTTTTTTTATGATGCAAATGCAAGT
1 GATGCAAATGCAAATGTCTTTTTTATGATGTAAATGCAAGC
* * * * *
14748075 GATACAAATGCGAATGTCTATTTTGTGATGTAGATGCAA-C
1 GATGCAAATGCAAATGTCTTTTTTATGATGTAAATGCAAGC
* * * * *
14748115 TGATGCAAATGCGAATGTCTTTTTTAATGTTATAGATGTAAGC
1 -GATGCAAATGCAAATGTCTTTTTT-ATGATGTAAATGCAAGC
* * * * * *
14748158 GATACAAATGCGAATGTCTTTCTTGTGATGCAAATGTAAGC
1 GATGCAAATGCAAATGTCTTTTTTATGATGTAAATGCAAGC
* * *
14748199 GATGTAAATGTGAATATTGTC--TTTT-TGATGTAAATGCAATC
1 GATGCAAATG-CAA-A-TGTCTTTTTTATGATGTAAATGCAAGC
* *
14748240 GATGTAAATGCAAATGTCTTTTTTCTGATGTA
1 GATGCAAATGCAAATGTCTTTTTTATGATGTA
14748272 GATGTGAATG
Statistics
Matches: 158, Mismatches: 30, Indels: 18
0.77 0.15 0.09
Matches are distributed among these distances:
38 4 0.03
39 1 0.01
40 6 0.04
41 104 0.66
42 37 0.23
43 2 0.01
44 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (41 bp):
GATGCAAATGCAAATGTCTTTTTTATGATGTAAATGCAAGC
Found at i:14748406 original size:113 final size:112
Alignment explanation
Indices: 14748267--14748495 Score: 289
Period size: 113 Copynumber: 2.0 Consensus size: 112
14748257 CTTTTTTCTG
* * ** * *
14748267 ATGTAGATGTGAATGTCAATGTCTTTCTAATGATGTACACGTAAGTACGAATACGAGTGATGCAA
1 ATGTAGATGTGAATGTCAATGTCTTTCTAATGATGCAAACACAAATACGAATACAAGTGATGCAA
** * * *
14748332 ATGTGAATGTCTTTTTTAATGATGTAGATGCAAGTGATGCAAATGCAA
66 ATGCAAATATCTTTTTT-ACGATGTAGATGCAAGTGATGCAAATACAA
* * *
14748380 ATGTAGATGTGTATG-CAAATGTCTTTCTCATGATGCAAACACAAATACGAATGCAAGTGATGCA
1 ATGTAGATGTGAATGTC-AATGTCTTTCTAATGATGCAAACACAAATACGAATACAAGTGATGCA
* *
14748444 AATGCAAATATCTTTTTTGCGATGTATATGCAAGTGATGCAAATACAA
65 AATGCAAATATCTTTTTTACGATGTAGATGCAAGTGATGCAAATACAA
14748492 ATGT
1 ATGT
14748496 CTTTTTTCAT
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
112 31 0.31
113 68 0.69
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (112 bp):
ATGTAGATGTGAATGTCAATGTCTTTCTAATGATGCAAACACAAATACGAATACAAGTGATGCAA
ATGCAAATATCTTTTTTACGATGTAGATGCAAGTGATGCAAATACAA
Found at i:14748487 original size:41 final size:41
Alignment explanation
Indices: 14748429--14748543 Score: 135
Period size: 41 Copynumber: 2.8 Consensus size: 41
14748419 CACAAATACG
14748429 AATGCAAGTGATGCAAATGCAAATATCTTTTTTGCGATG-TAT
1 AATGCAAGTGATGCAAATGCAAATATCTTTTTT-C-ATGATAT
* *
14748471 -ATGCAAGTGATGCAAATACAAATGTCTTTTTTCATGATAT
1 AATGCAAGTGATGCAAATGCAAATATCTTTTTTCATGATAT
** **
14748511 AGATGCAAGTGACACAAATGTGAATATCTTTTT
1 A-ATGCAAGTGATGCAAATGCAAATATCTTTTT
14748544 GCATCTATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
39 3 0.05
40 4 0.06
41 30 0.48
42 25 0.40
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (41 bp):
AATGCAAGTGATGCAAATGCAAATATCTTTTTTCATGATAT
Found at i:14749840 original size:16 final size:16
Alignment explanation
Indices: 14749819--14749852 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14749809 TTTTCTCTTT
14749819 TTTTTTTTTGGAAACA
1 TTTTTTTTTGGAAACA
14749835 TTTTTTTTTGGAAACA
1 TTTTTTTTTGGAAACA
14749851 TT
1 TT
14749853 ATACTTCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59
Consensus pattern (16 bp):
TTTTTTTTTGGAAACA
Found at i:14750006 original size:10 final size:10
Alignment explanation
Indices: 14749993--14750023 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
14749983 ATTTCTCTCC
14749993 TTTTCTTTTT
1 TTTTCTTTTT
14750003 TTTTCTTTTTT
1 TTTTC-TTTTT
14750014 TTTTCTTTTT
1 TTTTCTTTTT
14750024 CATTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:14750014 original size:11 final size:11
Alignment explanation
Indices: 14749993--14750023 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14749983 ATTTCTCTCC
14749993 TTTTC-TTTTT
1 TTTTCTTTTTT
14750003 TTTTCTTTTTT
1 TTTTCTTTTTT
14750014 TTTTCTTTTT
1 TTTTCTTTTT
14750024 CATTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:14750022 original size:17 final size:17
Alignment explanation
Indices: 14749993--14750032 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
14749983 ATTTCTCTCC
*
14749993 TTTTCTTTTTTTTTC-T
1 TTTTTTTTTTTTTTCAT
14750009 TTTTTTTTTCTTTTTCAT
1 TTTTTTTTT-TTTTTCAT
14750027 TTTTTT
1 TTTTTT
14750033 GAAATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 6 0.29
18 7 0.33
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTTTTTTCAT
Found at i:14750840 original size:19 final size:19
Alignment explanation
Indices: 14750816--14750856 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14750806 AGATAAAAGG
*
14750816 TTTTTTTTCATTTTTTTGT
1 TTTTTTTTCATTGTTTTGT
**
14750835 TTTTTTTTTGTTGTTTTGT
1 TTTTTTTTCATTGTTTTGT
14750854 TTT
1 TTT
14750857 GTTGTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.85
Consensus pattern (19 bp):
TTTTTTTTCATTGTTTTGT
Found at i:14750842 original size:13 final size:13
Alignment explanation
Indices: 14750826--14750875 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
14750816 TTTTTTTTCA
14750826 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
*
14750839 TTTTTGTTGTTTTG
1 TTTTT-TTGTTTTT
*
14750853 TTTTGTTGTTTTT
1 TTTTTTTGTTTTT
*
14750866 TTTTTGTGTT
1 TTTTTTTGTT
14750876 ATAACCACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (13 bp):
TTTTTTTGTTTTT
Found at i:14752490 original size:24 final size:24
Alignment explanation
Indices: 14752449--14752495 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14752439 ACATTAAACA
14752449 AAAGAATAAAAACTAAAA-TCAAT
1 AAAGAATAAAAACTAAAACTCAAT
14752472 AAAGCAATAAAAA-TCAAAACTCAA
1 AAAG-AATAAAAACT-AAAACTCAA
14752496 ATATAAACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.68, C:0.13, G:0.04, T:0.15
Consensus pattern (24 bp):
AAAGAATAAAAACTAAAACTCAAT
Found at i:14754526 original size:27 final size:27
Alignment explanation
Indices: 14754494--14754550 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
14754484 TAATTGAAAG
*
14754494 CTTTCAAGAGAATTGTACACCCTCAAA
1 CTTTCAAGAGAATTGTACACACTCAAA
14754521 CTTTCAAGAGAATTGTACACACTCAAA
1 CTTTCAAGAGAATTGTACACACTCAAA
14754548 CTT
1 CTT
14754551 AGATTTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (27 bp):
CTTTCAAGAGAATTGTACACACTCAAA
Found at i:14755965 original size:18 final size:17
Alignment explanation
Indices: 14755938--14755978 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
14755928 ATGATATTTT
*
14755938 CTAAAAATAGAAAAGTTA
1 CTAAACATAGAAAA-TTA
14755956 CTAAACATAGAAAATTA
1 CTAAACATAGAAAATTA
*
14755973 CAAAAC
1 CTAAAC
14755979 CATAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (17 bp):
CTAAACATAGAAAATTA
Found at i:14755982 original size:18 final size:18
Alignment explanation
Indices: 14755940--14755978 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
14755930 GATATTTTCT
14755940 AAAA-ATAGAAAAGTTAC
1 AAAACATAGAAAAGTTAC
*
14755957 TAAACATAGAAAA-TTAC
1 AAAACATAGAAAAGTTAC
14755974 AAAAC
1 AAAAC
14755979 CATAAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.64, C:0.10, G:0.08, T:0.18
Consensus pattern (18 bp):
AAAACATAGAAAAGTTAC
Found at i:14757974 original size:20 final size:20
Alignment explanation
Indices: 14757936--14757974 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14757926 GCATGTTTAG
*
14757936 GTTTTAATCTTGATTTATTT
1 GTTTTAATCTTGATATATTT
14757956 GTTTATAATCTT-ATATATT
1 GTTT-TAATCTTGATATATT
14757975 CTATTATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (20 bp):
GTTTTAATCTTGATATATTT
Found at i:14767731 original size:9 final size:9
Alignment explanation
Indices: 14767717--14767751 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
14767707 TGCAAATAAG
14767717 AAAAAAATA
1 AAAAAAATA
14767726 AAAAAAATA
1 AAAAAAATA
14767735 AACAAAAATA
1 AA-AAAAATA
14767745 AAAAAAA
1 AAAAAAA
14767752 GTTTAGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.89, C:0.03, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAAATA
Found at i:14767735 original size:20 final size:19
Alignment explanation
Indices: 14767710--14767751 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
14767700 CTATGCATGC
14767710 AAATAAGAAAAAAATAAAAA
1 AAATAA-AAAAAAATAAAAA
*
14767730 AAATAAACAAAAATAAAAA
1 AAATAAAAAAAAATAAAAA
14767749 AAA
1 AAA
14767752 GTTTAGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.86, C:0.02, G:0.02, T:0.10
Consensus pattern (19 bp):
AAATAAAAAAAAATAAAAA
Found at i:14776958 original size:22 final size:23
Alignment explanation
Indices: 14776919--14776961 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14776909 AGCAAAAGTA
*
14776919 ACTTTGCTCTTTTGATTTTTTCT
1 ACTTTGCTCTTTTCATTTTTTCT
*
14776942 ACTTTTCT-TTTTCATTTTTT
1 ACTTTGCTCTTTTCATTTTTT
14776962 TGCAGTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.09, C:0.16, G:0.05, T:0.70
Consensus pattern (23 bp):
ACTTTGCTCTTTTCATTTTTTCT
Found at i:14777264 original size:30 final size:30
Alignment explanation
Indices: 14777230--14777287 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14777220 TTGTTTGTAA
14777230 TTTTTTATTAAGTTGAATT-AGTATTAAATT
1 TTTTTTATTAAGTTGAATTGAG-ATTAAATT
* *
14777260 TTTTTTATTTAGTTTAATTGAGATTAAA
1 TTTTTTATTAAGTTGAATTGAGATTAAA
14777288 GTTTAGATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (30 bp):
TTTTTTATTAAGTTGAATTGAGATTAAATT
Found at i:14777308 original size:35 final size:35
Alignment explanation
Indices: 14777262--14777335 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
14777252 ATTAAATTTT
* * *
14777262 TTTTATTTAGTTTAATTGAGATTAAAGTTTAGATC
1 TTTTAATTAGTTTAATTAAGATTAAAGTGTAGATC
*
14777297 TTTTAATTAGTTTAATTAAGATTAAAGTGTAGATG
1 TTTTAATTAGTTTAATTAAGATTAAAGTGTAGATC
14777332 TTTT
1 TTTT
14777336 GGTTACTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.51
Consensus pattern (35 bp):
TTTTAATTAGTTTAATTAAGATTAAAGTGTAGATC
Found at i:14785591 original size:25 final size:25
Alignment explanation
Indices: 14785548--14785596 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
14785538 GAAATCAAGC
*
14785548 TGCACTAATGTAAGAGAATTAGATA
1 TGCACTAATGTAAGAGAATCAGATA
* * *
14785573 TGCACTACTGTAGGTGAATCAGAT
1 TGCACTAATGTAAGAGAATCAGAT
14785597 TTTTACACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (25 bp):
TGCACTAATGTAAGAGAATCAGATA
Found at i:14791933 original size:22 final size:22
Alignment explanation
Indices: 14791905--14791946 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14791895 TTTCAAATAG
*
14791905 CTAGAAATTAGGGATCTGATAA
1 CTAGAAATTAAGGATCTGATAA
*
14791927 CTAGAAATTAAGGATTTGAT
1 CTAGAAATTAAGGATCTGAT
14791947 CCTTTGACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (22 bp):
CTAGAAATTAAGGATCTGATAA
Found at i:14798889 original size:2 final size:2
Alignment explanation
Indices: 14798884--14798910 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14798874 AAATGAAAAA
14798884 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14798911 GGTTTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14800185 original size:18 final size:18
Alignment explanation
Indices: 14800162--14800198 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14800152 TGAATTCATT
14800162 TTGTGGAAAAAATGAGAG
1 TTGTGGAAAAAATGAGAG
14800180 TTGTGGAAAAAATGAGAG
1 TTGTGGAAAAAATGAGAG
14800198 T
1 T
14800199 ATATTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (18 bp):
TTGTGGAAAAAATGAGAG
Found at i:14800208 original size:18 final size:18
Alignment explanation
Indices: 14800165--14800208 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14800155 ATTCATTTTG
*
14800165 TGGAAAAAATGAGAGTTG
1 TGGAAAAAATGAGAGTTA
14800183 TGGAAAAAATGAGAGTATA
1 TGGAAAAAATGAGAGT-TA
*
14800202 TTGAAAA
1 TGGAAAA
14800209 CTTGTGTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (18 bp):
TGGAAAAAATGAGAGTTA
Found at i:14808096 original size:191 final size:191
Alignment explanation
Indices: 14807861--14808247 Score: 510
Period size: 190 Copynumber: 2.0 Consensus size: 191
14807851 TTATTCTCTT
* * *
14807861 TAAAATCAAAATAAGAAATGTAATTTTTTTTATTAATCTTAAAATTTATGATTTTTTCTAGTAAT
1 TAAAATCAAAATAAGAAAAGTAATATTTTTTATTAATCTTAAAATTTATGATTTTTTCTAATAAT
* *
14807926 AATTTTTTTCATTACACTAATTCAT-AAAAAATTTTAATATAAATATTTTTTGGTAATTTTTCAT
66 AACTTTTTTCATTACACTAATTCATAAAAAAATTTT-A-ATAAATATTTTTTGGTAAGTTTTCAT
* *** * * *
14807990 AAAATTTTACCCCTAACATTTATGGAAATGCATTTCCGCAAATTGTTCATTTCCAAAAGGTTA
129 AAAATTTTACCCCTAACACTTACCAAAATGCATTTCCGAAAAGTGTTCATTTCCAAAAAGTTA
* *
14808053 TAAAATCAAAAT-AGTAAAAGTAA-ATTTTTTATTAATTTTAAAATTTATGATTTTTTTTAATAA
1 TAAAATCAAAATAAG-AAAAGTAATATTTTTTATTAATCTTAAAATTTATGATTTTTTCTAATAA
* * * * **
14808116 TAACTTTTTTCCTTACACTAATTCATAAAAAAATTTTAATCAATTTTTTTTTGTAAGTTTTGGTA
65 TAACTTTTTTCATTACACTAATTCATAAAAAAATTTTAATAAATATTTTTTGGTAAGTTTTCATA
* * * *
14808181 AAATTTTACTCTTGATACTTACCAAAATGCATTTCCGAAAAGTGTTCATTTCCAAAAAGTTA
130 AAATTTTACCCCTAACACTTACCAAAATGCATTTCCGAAAAGTGTTCATTTCCAAAAAGTTA
14808243 TAAAA
1 TAAAA
14808248 CTTTTTGGAA
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
190 77 0.46
191 63 0.37
192 29 0.17
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (191 bp):
TAAAATCAAAATAAGAAAAGTAATATTTTTTATTAATCTTAAAATTTATGATTTTTTCTAATAAT
AACTTTTTTCATTACACTAATTCATAAAAAAATTTTAATAAATATTTTTTGGTAAGTTTTCATAA
AATTTTACCCCTAACACTTACCAAAATGCATTTCCGAAAAGTGTTCATTTCCAAAAAGTTA
Found at i:14809155 original size:21 final size:21
Alignment explanation
Indices: 14809129--14809207 Score: 81
Period size: 21 Copynumber: 3.8 Consensus size: 21
14809119 GTCAATAAGC
14809129 ACCATTAAATTGATGACATGG
1 ACCATTAAATTGATGACATGG
*
14809150 ACCATTCAATTGATGACATGG
1 ACCATTAAATTGATGACATGG
*
14809171 A--TTGTAGAATTGATGACATGG
1 ACCAT-TA-AATTGATGACATGG
* * *
14809192 GCTATAAAATTGATGA
1 ACCATTAAATTGATGA
14809208 ATTGCTACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.02
20 1 0.02
21 44 0.92
22 1 0.02
23 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (21 bp):
ACCATTAAATTGATGACATGG
Found at i:14817358 original size:18 final size:18
Alignment explanation
Indices: 14817335--14817372 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14817325 TTATGGAAAT
14817335 GACTTTCATATCTATAGA
1 GACTTTCATATCTATAGA
14817353 GACTTTCATATCTATAGA
1 GACTTTCATATCTATAGA
14817371 GA
1 GA
14817373 GGCATTAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (18 bp):
GACTTTCATATCTATAGA
Found at i:14818659 original size:17 final size:18
Alignment explanation
Indices: 14818637--14818671 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14818627 TTAGATATAA
14818637 GAAATTC-ATGAAAAATT
1 GAAATTCTATGAAAAATT
*
14818654 GAAATTCTATTAAAAATT
1 GAAATTCTATGAAAAATT
14818672 ATGAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (18 bp):
GAAATTCTATGAAAAATT
Found at i:14818745 original size:19 final size:19
Alignment explanation
Indices: 14818717--14818753 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14818707 TACTAATAGT
14818717 GAGTGAATAGACAAAACTG
1 GAGTGAATAGACAAAACTG
*
14818736 GAGTGTATAGACAAAACT
1 GAGTGAATAGACAAAACT
14818754 ATACTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
GAGTGAATAGACAAAACTG
Found at i:14818830 original size:15 final size:17
Alignment explanation
Indices: 14818806--14818837 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14818796 TAAATTTCAA
14818806 TTTTGTTCTT-TTACAT
1 TTTTGTTCTTATTACAT
14818822 TTTTG-TCTTATTACAT
1 TTTTGTTCTTATTACAT
14818838 AACCAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTGTTCTTATTACAT
Found at i:14821882 original size:2 final size:2
Alignment explanation
Indices: 14821875--14821911 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14821865 TAATTCAGCT
14821875 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14821912 TTCTTTCCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14823002 original size:31 final size:31
Alignment explanation
Indices: 14822967--14823030 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
14822957 AGGTTCAGGA
14822967 TAAGCAAAAGGCTTAGGCTAAGGCGTAAAGC
1 TAAGCAAAAGGCTTAGGCTAAGGCGTAAAGC
14822998 TAAGCAAAAGGCTTAGGCTAAGGCGTAAAGC
1 TAAGCAAAAGGCTTAGGCTAAGGCGTAAAGC
14823029 TA
1 TA
14823031 TTTAGGTGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.17
Consensus pattern (31 bp):
TAAGCAAAAGGCTTAGGCTAAGGCGTAAAGC
Found at i:14827380 original size:12 final size:12
Alignment explanation
Indices: 14827363--14827401 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14827353 AAAAAGTTAT
14827363 TATTAGAATTAA
1 TATTAGAATTAA
14827375 TATTAGAATTAA
1 TATTAGAATTAA
**
14827387 TTATTCTAATTAA
1 -TATTAGAATTAA
14827400 TA
1 TA
14827402 ATTAATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (12 bp):
TATTAGAATTAA
Found at i:14827864 original size:19 final size:19
Alignment explanation
Indices: 14827840--14827877 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14827830 TTGAATAAGC
14827840 TTGTATGATAAAAAAACAA
1 TTGTATGATAAAAAAACAA
* *
14827859 TTGTATTATAATAAAACAA
1 TTGTATGATAAAAAAACAA
14827878 AAGGTCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (19 bp):
TTGTATGATAAAAAAACAA
Found at i:14827915 original size:164 final size:163
Alignment explanation
Indices: 14827736--14828069 Score: 386
Period size: 164 Copynumber: 2.0 Consensus size: 163
14827726 TTCAAATAAT
* * * * * * *
14827736 AATAACTATTTAAACTAGTTTGGTAAA-TAGATTTATTTTTTAAATC-TCTTAGTTATTAATTTT
1 AATAATTATTTAAACTAATTTGATAAACTA-ATTTATTTTTAAAATCTTC-AACTTATCAATTTT
* * * * *
14827799 TGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTA-TGATAAAAAAACAATTGT
64 TGAAATAGTAATAAAGTAATATTATTTTAATTTGAATAAG-TTGTATTGA-AAAAAAACAAATGT
*
14827863 ATTATAATAAAACAAAAGGTCATAACGATTTGAAATA
127 ATTATAATAAAACAAAAGGTCATAACAATTTGAAATA
*
14827900 AATAATTATTTAAACTAATTTGATAAACTAATTTATTTTTAAAATCTTCAACTTCTCAATTTTTG
1 AATAATTATTTAAACTAATTTGATAAACTAATTTATTTTTAAAATCTTCAACTTATCAATTTTTG
* * *** *
14827965 AAATAGTAATAAAGTAATATTATTTTAATTTGGATAAGTTTTATTGAATTGAAACAAATGTTTTA
66 AAATAGTAATAAAGTAATATTATTTTAATTTGAATAAGTTGTATTGAAAAAAAACAAATGTATTA
* * * *
14828030 TGATAAAACAAAATGTCATAATAATTTTAAATA
131 TAATAAAACAAAAGGTCATAACAATTTGAAATA
*
14828063 GATAATT
1 AATAATT
14828070 GTTCAAATAG
Statistics
Matches: 142, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
163 51 0.36
164 87 0.61
165 4 0.03
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (163 bp):
AATAATTATTTAAACTAATTTGATAAACTAATTTATTTTTAAAATCTTCAACTTATCAATTTTTG
AAATAGTAATAAAGTAATATTATTTTAATTTGAATAAGTTGTATTGAAAAAAAACAAATGTATTA
TAATAAAACAAAAGGTCATAACAATTTGAAATA
Found at i:14828231 original size:19 final size:19
Alignment explanation
Indices: 14828207--14828245 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14828197 AAAAAATGTT
*
14828207 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
14828226 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
14828245 T
1 T
14828246 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:14828287 original size:23 final size:23
Alignment explanation
Indices: 14828261--14828306 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14828251 TTGAATAAAT
*
14828261 TATTAATATTTTTAATAATATTA
1 TATTAATATTATTAATAATATTA
14828284 TATTAATATTATTAATAATATTA
1 TATTAATATTATTAATAATATTA
14828307 ATAATCCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTAATATTATTAATAATATTA
Found at i:14828375 original size:29 final size:29
Alignment explanation
Indices: 14828291--14828381 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
14828281 TTATATTAAT
* *
14828291 ATTATTAAT-AATATTAATAATCCAATTAAA
1 ATTA-TAATAAATATTAATAAT-TAATTATA
* * * *
14828321 ATT-TAACATATATTAAT-TTTCTATTATA
1 ATTATAATAAATATTAATAATT-AATTATA
14828349 ATTATAATAAATATTAATAATTAATTATA
1 ATTATAATAAATATTAATAATTAATTATA
14828378 ATTA
1 ATTA
14828382 ATAAGGATTA
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
28 12 0.26
29 30 0.64
30 5 0.11
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTATAATAAATATTAATAATTAATTATA
Found at i:14829441 original size:9 final size:8
Alignment explanation
Indices: 14829400--14829514 Score: 57
Period size: 9 Copynumber: 14.4 Consensus size: 8
14829390 AACTACTAAT
*
14829400 TAATATTG
1 TAATATTA
14829408 TAATTATT-
1 TAA-TATTA
14829416 TAAT-TTA
1 TAATATTA
*
14829423 TTATA-T-
1 TAATATTA
14829429 TAATATTTA
1 TAATA-TTA
14829438 TAATATTA
1 TAATATTA
*
14829446 CTAATAAT-
1 -TAATATTA
14829454 TAATATTA
1 TAATATTA
* *
14829462 TTATAATA
1 TAATATTA
14829470 TAATAATTA
1 TAAT-ATTA
14829479 TAATATTTTTA
1 TAATA---TTA
14829490 TAATATTA
1 TAATATTA
14829498 GTAAT-TT-
1 -TAATATTA
14829505 TAATA-TA
1 TAATATTA
14829512 TAA
1 TAA
14829515 ATATAGTTTC
Statistics
Matches: 84, Mismatches: 8, Indels: 31
0.68 0.07 0.25
Matches are distributed among these distances:
6 11 0.13
7 14 0.17
8 25 0.30
9 26 0.31
11 8 0.10
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (8 bp):
TAATATTA
Found at i:14829455 original size:25 final size:24
Alignment explanation
Indices: 14829427--14829518 Score: 73
Period size: 24 Copynumber: 3.7 Consensus size: 24
14829417 AATTTATTAT
14829427 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTA-TAATA
* *
14829452 ATTAATA-TTATTATAATATAATA
1 ATTAATATTTATAATATTATAATA
14829475 ATTATAATATTTTTATAATATTAGTAAT-
1 A-T-TAATA--TTTATAATATTA-TAATA
* *
14829503 TTTAATATATA-AATAT
1 ATTAATATTTATAATAT
14829519 AGTTTCTATT
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
23 11 0.20
24 13 0.24
25 12 0.22
26 5 0.09
27 1 0.02
28 9 0.16
29 4 0.07
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:14829459 original size:16 final size:16
Alignment explanation
Indices: 14829436--14829483 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
14829426 TATTAATATT
14829436 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
*
14829453 T-TAATATTATTATAA
1 TATAATATTATAATAA
14829468 TATAATAATTATAATA
1 TATAAT-ATTATAATA
14829484 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:14829511 original size:20 final size:21
Alignment explanation
Indices: 14829447--14829519 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 21
14829437 ATAATATTAC
*
14829447 TAATAATTAATATTATTATAATA
1 TAATAATT-ATAATATT-TAATA
*
14829470 TAATAATTATAATATTT-TTA
1 TAATAATTATAATATTTAATA
14829490 TAAT-ATTAGTAAT-TTTAATA
1 TAATAATTA-TAATATTTAATA
*
14829510 T-ATAAATATA
1 TAATAATTATA
14829520 GTTTCTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 11 0.26
20 16 0.37
21 1 0.02
22 7 0.16
23 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
TAATAATTATAATATTTAATA
Found at i:14829892 original size:16 final size:17
Alignment explanation
Indices: 14829871--14829904 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14829861 AAAATATAAT
14829871 ATTATAA-TTAATTATA
1 ATTATAACTTAATTATA
*
14829887 ATTATAACTTATTTATA
1 ATTATAACTTAATTATA
14829904 A
1 A
14829905 GTTAATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATAACTTAATTATA
Found at i:14829927 original size:29 final size:27
Alignment explanation
Indices: 14829856--14829920 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
14829846 ATTATTAAAT
14829856 ATTATAAAATATAA--TA-TTATAATTA
1 ATTAT-AAATATAACTTATTTATAATTA
*
14829881 ATTATAATTATAACTTATTTATAAGTTA
1 ATTATAAATATAACTTATTTATAA-TTA
14829909 ATTTATAAATAT
1 A-TTATAAATAT
14829921 TAGTTATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 7 0.21
25 5 0.15
26 2 0.06
27 6 0.18
28 4 0.12
29 9 0.27
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATAAATATAACTTATTTATAATTA
Found at i:14829977 original size:36 final size:36
Alignment explanation
Indices: 14829897--14829978 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 36
14829887 ATTATAACTT
14829897 ATTTATAAGTTAATTTATAAATATTAGTTATAATATTTA
1 ATTTAT-A-TTAATTTATAAATATTAGTTATAATA-TTA
*
14829936 A-TTATATTAATTTATTAATAATTA-TATATAATA-TA
1 ATTTATATTAATTTATAAAT-ATTAGT-TATAATATTA
14829971 ATTTATAT
1 ATTTATAT
14829979 ATTATAAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
35 3 0.08
36 19 0.49
37 12 0.31
38 4 0.10
39 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (36 bp):
ATTTATATTAATTTATAAATATTAGTTATAATATTA
Found at i:14829979 original size:14 final size:15
Alignment explanation
Indices: 14829953--14829985 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14829943 TAATTTATTA
14829953 ATAATTATATATAAT
1 ATAATTATATATAAT
*
14829968 ATAATT-TATATATT
1 ATAATTATATATAAT
14829982 ATAA
1 ATAA
14829986 AACAATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTATATATAAT
Found at i:14829981 original size:60 final size:59
Alignment explanation
Indices: 14829865--14829982 Score: 136
Period size: 62 Copynumber: 2.0 Consensus size: 59
14829855 TATTATAAAA
*
14829865 TATAATATTATAATTAATTATAATTATAACTTATTTATAAGTTAATTTATAAATATTAGT
1 TATAATATTATAATTAATTATAATTATAACTTATATATAAGTTAATTTAT-AATATTAGT
*
14829925 TATAATATT-TAATTATATTAATTTATTAATAA-TTATATATAA-TATAATTTAT-ATATTA
1 TATAATATTATAATTA-ATT-A-TAATT-ATAACTTATATATAAGT-TAATTTATAATATTA
14829983 TAAAACAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
59 6 0.12
60 18 0.35
61 2 0.04
62 21 0.41
63 4 0.08
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52
Consensus pattern (59 bp):
TATAATATTATAATTAATTATAATTATAACTTATATATAAGTTAATTTATAATATTAGT
Found at i:14830037 original size:28 final size:29
Alignment explanation
Indices: 14829964--14830037 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
14829954 TAATTATATA
*
14829964 TAATATAATTTATATATTATAAAACAATTGT
1 TAAT-TAATTTA-ATATTATAAAACAAGTGT
*
14829995 TATATTACTTTAATATTATAAAA-ATAGT-T
1 TA-ATTAATTTAATATTATAAAACA-AGTGT
14830024 TAATTAATTTAATA
1 TAATTAATTTAATA
14830038 ATTCTATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 11 0.29
29 4 0.11
30 13 0.34
31 8 0.21
32 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (29 bp):
TAATTAATTTAATATTATAAAACAAGTGT
Found at i:14830951 original size:18 final size:19
Alignment explanation
Indices: 14830915--14830961 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
14830905 ATAATTATTT
*
14830915 TTTATCTTATATAACTATA
1 TTTATATTATATAACTATA
14830934 TTTATATTATAT-ACTATA
1 TTTATATTATATAACTATA
* *
14830952 ATAATATTAT
1 TTTATATTAT
14830962 TAAATTATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTATATTATATAACTATA
Found at i:14831303 original size:23 final size:23
Alignment explanation
Indices: 14831247--14831309 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
14831237 ATAAATATAA
* *
14831247 TAATATT-TAATTAAATA-TTTT
1 TAATATTATTATTAAATACATTT
14831268 TAATATTATTATTAAATACATTT
1 TAATATTATTATTAAATACATTT
* *
14831291 TACTAGTTA-TATTTAATAC
1 TAATA-TTATTATTAAATAC
14831310 TATAATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 7 0.20
22 9 0.26
23 16 0.46
24 3 0.09
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (23 bp):
TAATATTATTATTAAATACATTT
Found at i:14831376 original size:16 final size:16
Alignment explanation
Indices: 14831355--14831390 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
14831345 TTATTTATAT
14831355 AATTAAAATTAATTAA
1 AATTAAAATTAATTAA
*
14831371 AATTAAAATTATTTAA
1 AATTAAAATTAATTAA
14831387 AATT
1 AATT
14831391 TTTGTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTAAAATTAATTAA
Found at i:14831740 original size:23 final size:22
Alignment explanation
Indices: 14831705--14831785 Score: 58
Period size: 23 Copynumber: 3.5 Consensus size: 22
14831695 ATTTATTTAG
*
14831705 TAATATATCATATTATT-ATATAT
1 TAAT-TATAATATTATTAAT-TAT
*
14831728 TAAATTATAATATTGTTAATTAT
1 T-AATTATAATATTATTAATTAT
* *
14831751 TAATTATATAGATTAATTAATAAGT
1 TAATTATA-ATATT-ATTAATTA-T
14831776 TAA-TATAATA
1 TAATTATAATA
14831786 CATAATAGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
22 7 0.15
23 21 0.45
24 15 0.32
25 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (22 bp):
TAATTATAATATTATTAATTAT
Found at i:14832389 original size:29 final size:29
Alignment explanation
Indices: 14832321--14832392 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
14832311 TTAATATCAA
*
14832321 ATTATTTATATT-TTTTAAAATTAATAATT
1 ATTATTTA-ATTATTTTAAAATTAATAAAT
* * *
14832350 AATATATAATTATTTGTAACATTAA-AAAT
1 ATTATTTAATTATTT-TAAAATTAATAAAT
14832379 ATTATTTAATTATT
1 ATTATTTAATTATT
14832393 ATATGTTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 3 0.09
29 24 0.69
30 8 0.23
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
ATTATTTAATTATTTTAAAATTAATAAAT
Found at i:14832823 original size:21 final size:20
Alignment explanation
Indices: 14832795--14832839 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
14832785 AAAACAAAAT
14832795 TAATACTATATAAAT-ATTAA
1 TAATACTA-ATAAATAATTAA
*
14832815 TAATAACTAATAATTAATTAA
1 TAAT-ACTAATAAATAATTAA
14832836 TAAT
1 TAAT
14832840 TGTTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATACTAATAAATAATTAA
Found at i:14833156 original size:12 final size:12
Alignment explanation
Indices: 14833141--14833165 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14833131 CTTAATTATT
14833141 ATAATTAATTTA
1 ATAATTAATTTA
14833153 ATAATTAATTTA
1 ATAATTAATTTA
14833165 A
1 A
14833166 ATGAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAATTAATTTA
Found at i:14833304 original size:19 final size:19
Alignment explanation
Indices: 14833261--14833322 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
14833251 AATTTATTAA
*
14833261 ATTATTAGTATAATAATTATTT
1 ATTATTA-TA-AATAATT-TCT
14833283 ATTATTATAAATAATTTCT
1 ATTATTATAAATAATTTCT
*
14833302 ATTATTA-AATTAATATTCT
1 ATTATTATAAATAAT-TTCT
14833321 AT
1 AT
14833323 GACAAAACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.16
19 15 0.41
20 7 0.19
21 2 0.05
22 7 0.19
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTATTATAAATAATTTCT
Found at i:14833433 original size:24 final size:23
Alignment explanation
Indices: 14833405--14833466 Score: 56
Period size: 23 Copynumber: 2.6 Consensus size: 23
14833395 AAATAGATTT
14833405 ATTTTTTAAATTTCTTACTTA-TAA
1 ATTTTTTAAATTT-TTA-TTACTAA
*
14833429 A-TTTTAATAATTTTTATTACTAA
1 ATTTTTTA-AATTTTTATTACTAA
14833452 ATTAATTTTAAATTT
1 ATT--TTTTAAATTT
14833467 ATTTTGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 3 0.10
23 12 0.39
24 7 0.23
25 5 0.16
26 4 0.13
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTTTTTAAATTTTTATTACTAA
Found at i:14833737 original size:20 final size:19
Alignment explanation
Indices: 14833712--14833754 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
14833702 ATAATAGATA
14833712 AATATTAA-TTATTTAATATT
1 AATATTAATTTA-TT-ATATT
14833732 AATATTAATTTATTATATT
1 AATATTAATTTATTATATT
14833751 AATA
1 AATA
14833755 AGTTTGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 10 0.45
21 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATATTAATTTATTATATT
Found at i:14834022 original size:20 final size:20
Alignment explanation
Indices: 14833997--14834036 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14833987 TTCAAATTAA
14833997 TAATTTTATAA-ATATAATAT
1 TAATTTTA-AACATATAATAT
14834017 TAATTTTAAACATATAATAT
1 TAATTTTAAACATATAATAT
14834037 AATAAGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTTTAAACATATAATAT
Found at i:14834075 original size:10 final size:9
Alignment explanation
Indices: 14834055--14834113 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
14834045 ATATATAATT
14834055 TAATTATAA
1 TAATTATAA
14834064 TAATTGATAA
1 TAATT-ATAA
14834074 T-ATT-TAA
1 TAATTATAA
*
14834081 TTATTATAA
1 TAATTATAA
14834090 TTAATTAAATAA
1 -TAATT--ATAA
*
14834102 CAATTATAA
1 TAATTATAA
14834111 TAA
1 TAA
14834114 ACATAACTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
7 4 0.10
8 3 0.07
9 17 0.41
10 9 0.22
11 4 0.10
12 4 0.10
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (9 bp):
TAATTATAA
Found at i:14834081 original size:14 final size:13
Alignment explanation
Indices: 14834060--14834113 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
14834050 TAATTTAATT
14834060 ATAA-TAATTGATA
1 ATAATTAATT-ATA
* *
14834073 ATATTTAATTATT
1 ATAATTAATTATA
14834086 ATAATTAATTA-A
1 ATAATTAATTATA
*
14834098 ATAA-CAATTATA
1 ATAATTAATTATA
14834110 ATAA
1 ATAA
14834114 ACATAACTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 9 0.26
13 15 0.44
14 5 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (13 bp):
ATAATTAATTATA
Found at i:14834222 original size:6 final size:6
Alignment explanation
Indices: 14834168--14834244 Score: 53
Period size: 6 Copynumber: 13.7 Consensus size: 6
14834158 GTTTATTAGC
* *
14834168 TTATAAA TTATAA -TA-AA TTCATAA -TAT-A TTATAA TAATAA TTGTAAA
1 TTAT-AA TTATAA TTATAA TT-ATAA TTATAA TTATAA TTATAA TTAT-AA
14834215 TTATAA -T-T-A TTATAA TTATAA TTAT-A TTAT
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTAT
14834245 TAAGTAATTA
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
3 1 0.02
4 5 0.09
5 15 0.26
6 25 0.44
7 11 0.19
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (6 bp):
TTATAA
Found at i:14834225 original size:28 final size:30
Alignment explanation
Indices: 14834181--14834237 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 30
14834171 TAAATTATAA
14834181 TAAATTCATAATATATTATAATAATAATTG
1 TAAATTCATAATATATTATAATAATAATTG
*
14834211 TAAATT-ATAAT-TATTATAATTATAATT
1 TAAATTCATAATATATTATAATAATAATT
14834238 ATATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 15 0.58
29 5 0.19
30 6 0.23
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (30 bp):
TAAATTCATAATATATTATAATAATAATTG
Found at i:14834541 original size:15 final size:13
Alignment explanation
Indices: 14834493--14834540 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 13
14834483 ATATAATTAT
14834493 ATTATTACATATCAA
1 ATTATTA-ATAT-AA
14834508 ATTATTAATATAGA
1 ATTATTAATATA-A
14834522 ATTAATTAATATAA
1 ATT-ATTAATATAA
14834536 TATTA
1 -ATTA
14834541 AATTCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 1 0.03
14 10 0.33
15 19 0.63
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (13 bp):
ATTATTAATATAA
Found at i:14835114 original size:13 final size:13
Alignment explanation
Indices: 14835096--14835120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14835086 TATTAATTAG
14835096 TAGTTTAATTAAA
1 TAGTTTAATTAAA
14835109 TAGTTTAATTAA
1 TAGTTTAATTAA
14835121 TATTTTATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAGTTTAATTAAA
Found at i:14835122 original size:12 final size:12
Alignment explanation
Indices: 14835088--14835127 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
14835078 AATAATATTA
*
14835088 TTAATTAGTAGT
1 TTAATTAATAGT
14835100 TTAATTAAATAGT
1 TTAATT-AATAGT
*
14835113 TTAATTAATATT
1 TTAATTAATAGT
14835125 TTA
1 TTA
14835128 TGAGTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:14835212 original size:26 final size:27
Alignment explanation
Indices: 14835183--14835249 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 27
14835173 TAATCTTTAT
14835183 TTAAATTAATTTAA-ATAATA-ATACTA
1 TTAAATTAATTTAAGATAATATA-ACTA
* *
14835209 TTAATAATAATTTAAGTATAATATAATTA
1 TTAA-ATTAATTTAAG-ATAATATAACTA
*
14835238 ATAAATTAATTT
1 TTAAATTAATTT
14835250 TATTAGAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.12
27 9 0.27
28 7 0.21
29 12 0.36
30 1 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (27 bp):
TTAAATTAATTTAAGATAATATAACTA
Found at i:14835287 original size:12 final size:13
Alignment explanation
Indices: 14835241--14835318 Score: 54
Period size: 14 Copynumber: 5.9 Consensus size: 13
14835231 ATAATTAATA
*
14835241 AATTAATTTTATT
1 AATTAATATTATT
*
14835254 AGAATAATATTATT
1 A-ATTAATATTATT
14835268 AATTAATATT-TT
1 AATTAATATTATT
* * *
14835280 ATTTAATA-AATGG
1 AATTAATATTAT-T
14835293 ATATTAATATTATT
1 A-ATTAATATTATT
14835307 AA-TAATAATTAT
1 AATTAAT-ATTAT
14835319 ATATATAGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
12 14 0.28
13 16 0.32
14 18 0.36
15 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (13 bp):
AATTAATATTATT
Found at i:14835518 original size:18 final size:18
Alignment explanation
Indices: 14835472--14835518 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
14835462 ATATAAATTC
*
14835472 TAATTATTATAATATTAG
1 TAATTATTATAATATTAA
**
14835490 TTTTTATTATAATATTAA
1 TAATTATTATAATATTAA
*
14835508 TAATTAATATA
1 TAATTATTATA
14835519 TTACAGATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTATTATAATATTAA
Found at i:14836244 original size:22 final size:21
Alignment explanation
Indices: 14836219--14836270 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
14836209 AGTTATAGCT
*
14836219 AATATTTAAGATTAATAATATA
1 AATATTTAACATTAATAAT-TA
* * *
14836241 AATAATTATCATTATTAATTA
1 AATATTTAACATTAATAATTA
*
14836262 ATTATTTAA
1 AATATTTAA
14836271 ATAGTTGAAT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
AATATTTAACATTAATAATTA
Found at i:14837170 original size:20 final size:21
Alignment explanation
Indices: 14837130--14837180 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
14837120 TAATATTTAT
*
14837130 TAATATATAAATAATATAATTG
1 TAAT-TATAAATAATATAATTA
*
14837152 TAATTATAAATTA-ATAATTA
1 TAATTATAAATAATATAATTA
14837172 TAATTATAA
1 TAATTATAA
14837181 TATGTTATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 15 0.56
21 8 0.30
22 4 0.15
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
TAATTATAAATAATATAATTA
Found at i:14837174 original size:6 final size:6
Alignment explanation
Indices: 14837140--14837181 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
14837130 TAATATATAA
*
14837140 ATAA-T ATAATT GTAATT ATAAATT AATAATT ATAATT ATAAT
1 ATAATT ATAATT ATAATT AT-AATT -ATAATT ATAATT ATAAT
14837182 ATGTTATACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 4 0.12
6 18 0.56
7 8 0.25
8 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
ATAATT
Found at i:14837847 original size:177 final size:173
Alignment explanation
Indices: 14837538--14838093 Score: 517
Period size: 180 Copynumber: 3.1 Consensus size: 173
14837528 TTAATTAACT
* * * * * * * * *
14837538 GAATAAGCTTGTATGAACATAAATAATTATTTTAT-AGTAGAACAAAAAGTTATAACGATTTGAA
1 GAATAAGCTTATATGAACAAAAACATTTGTTTTATGA-CAAAACAAAAAGTCATAATGATTTGAA
* * *
14837602 ATAAATAATTTGTTAAATAGTCA-TAATATTTAATTGATTTAGATAAATAGATTTATTTTTTAAA
65 ATAAATAA-TTGTTAAATAGTCATTAATATTTAATTG-CTTAGATAAACAAATTT-TTTTTTAAA
* * *
14837666 TCTCTTATTAGTTTTCAAAATATTAATAGATTGATATTACTTTTATTCC
127 TCTCTTATTAATTTTTAAAATATTAATAGATT-ATATTA-TTTTATTTC
* * *
14837715 GAATAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAAATCATAATGATTTAAAA
1 GAATAAGCTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAA
* * * *
14837780 TATATAATTGTTCAAATAGTCATTATTATTTGAATTGGTTAGGTAAACAAATTTTTTTTTAAATC
66 TAAATAATTGTT-AAATAGTCATTAATATTT-AATTGCTTAGATAAACAAATTTTTTTTTAAA--
* * *
14837845 TCTTACTTATTAATTTTTGAAATATTAATAAATTCATTTTATTTTATTTC
127 TC-T-CTTATTAATTTTTAAAATATTAATAGATT-ATATTATTTTATTTC
* * *** ** * *
14837895 AAATAAGC-TAGTGTGAATTGAAATTTTTGTTTTATGATAAAACAAAAAGTCATAATGTTTTGAA
1 GAATAAGCTTA-TATGAACAAAAACATTTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAA
* * * * *
14837959 ATAGATAATTGTTATTATAGTC-TTAAATATTTAAATTGCTTTGATAAACAAATTTATTTTTAAT
65 ATAAATAATTGTTA-AATAGTCATT-AATATTT-AATTGCTTAGATAAACAAATTTTTTTTTAAA
*
14838023 TCTCTTAGTTATTAATTTTTAAAATATTATTAGATTAGTATTATTTTATTTC
127 TCTC----TTATTAATTTTTAAAATATTAATAGATTA-TATTATTTTATTTC
*
14838075 GAATAAGCTTCTATGAACA
1 GAATAAGCTTATATGAACA
14838094 GAAATATGAA
Statistics
Matches: 307, Mismatches: 55, Indels: 31
0.78 0.14 0.08
Matches are distributed among these distances:
176 6 0.02
177 76 0.25
178 23 0.07
179 13 0.04
180 158 0.51
181 31 0.10
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (173 bp):
GAATAAGCTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAA
TAAATAATTGTTAAATAGTCATTAATATTTAATTGCTTAGATAAACAAATTTTTTTTTAAATCTC
TTATTAATTTTTAAAATATTAATAGATTATATTATTTTATTTC
Found at i:14838302 original size:36 final size:36
Alignment explanation
Indices: 14838240--14838308 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
14838230 TAACTTATAA
* *
14838240 TTATATTATAGTTATTATTTTATAAATTAATATACC
1 TTATATTATAATTATTATTTTATAAATAAATATACC
14838276 TTAT-TTATAATTATTTATTATT-TAAATAAATAT
1 TTATATTATAATTA-TTATT-TTATAAATAAATAT
14838309 TATAATCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 8 0.28
36 19 0.66
37 2 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (36 bp):
TTATATTATAATTATTATTTTATAAATAAATATACC
Found at i:14838482 original size:15 final size:14
Alignment explanation
Indices: 14838462--14838502 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
14838452 AATAAATTAA
14838462 ATAATTATTAATATT
1 ATAATTATTAAT-TT
14838477 ATAATTATTAATTT
1 ATAATTATTAATTT
*
14838491 AT-AGTATTAATT
1 ATAATTATTAATT
14838503 AAAATAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (14 bp):
ATAATTATTAATTT
Found at i:14838503 original size:26 final size:30
Alignment explanation
Indices: 14838474--14838542 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 30
14838464 AATTATTAAT
*
14838474 ATTATAATTATTAAT-TT-ATAG-T-ATTA
1 ATTATAATTATTAATATTGATAGATAAATA
* *
14838500 ATTAAAATAATTAATATTGATAGATAAATA
1 ATTATAATTATTAATATTGATAGATAAATA
*
14838530 AATATAATTATTA
1 ATTATAATTATTA
14838543 TTATATAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
26 13 0.39
27 2 0.06
28 4 0.12
29 1 0.03
30 13 0.39
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (30 bp):
ATTATAATTATTAATATTGATAGATAAATA
Found at i:14838566 original size:19 final size:19
Alignment explanation
Indices: 14838539--14838575 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14838529 AAATATAATT
*
14838539 ATTATTATATAACAAATAG
1 ATTAATATATAACAAATAG
*
14838558 ATTAATATATAATAAATA
1 ATTAATATATAACAAATA
14838576 TTTATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTAATATATAACAAATAG
Found at i:14838616 original size:40 final size:41
Alignment explanation
Indices: 14838538--14838617 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 41
14838528 TAAATATAAT
* *
14838538 TATTATTATATAACAAATAGATTAATATATAATAAATATTTA
1 TATTATTAAATAAC-AATAAATTAATATATAATAAATATTTA
* * *
14838580 TATTATTAAATAAC-ATAAATTAATTTATATTTAATATT
1 TATTATTAAATAACAATAAATTAATATATAATAAATATT
14838618 AAAATAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 20 0.61
42 13 0.39
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (41 bp):
TATTATTAAATAACAATAAATTAATATATAATAAATATTTA
Found at i:14839109 original size:31 final size:34
Alignment explanation
Indices: 14839066--14839139 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 34
14839056 CTTATAATAA
14839066 TTAATATT-TAATTAAAATAA-ATTAA-AAGTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
* * *
14839097 TTAAT-TTATAATTTAATTAATATTAATAATTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
14839130 TTAATATTAT
1 TTAATATTAT
14839140 TAACATACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 2 0.06
31 15 0.42
32 5 0.14
33 10 0.28
34 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
TTAATATTATAATTAAAATAATATTAATAAGTAC
Found at i:14839135 original size:17 final size:18
Alignment explanation
Indices: 14839094--14839138 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
14839084 AAATTAAAAG
14839094 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
14839110 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
14839127 TACTTAATATTA
1 TACTTAATATTA
14839139 TTAACATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:14839157 original size:22 final size:22
Alignment explanation
Indices: 14839122--14839185 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
14839112 ATTAATATTA
*
14839122 ATAATTACTTAATATTATTAAC
1 ATAATGACTTAATATTATTAAC
*
14839144 ATACATGA-TTAATATTATTAGC
1 ATA-ATGACTTAATATTATTAAC
* *
14839166 ATAATTACATAATATTATTA
1 ATAATGACTTAATATTATTA
14839186 TATATTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 30 0.83
23 3 0.08
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (22 bp):
ATAATGACTTAATATTATTAAC
Found at i:14839632 original size:28 final size:29
Alignment explanation
Indices: 14839600--14839659 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
14839590 AATATTCTAT
14839600 TATATTAATAATTAA-TAAGAATTTATTTAA
1 TATA-TAA-AATTAATTAAGAATTTATTTAA
* **
14839630 TATATCAAATTAATTAATTATTTATTTAA
1 TATATAAAATTAATTAAGAATTTATTTAA
14839659 T
1 T
14839660 TAACTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.23
29 16 0.62
30 4 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TATATAAAATTAATTAAGAATTTATTTAA
Found at i:14839715 original size:22 final size:22
Alignment explanation
Indices: 14839667--14839711 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
14839657 AATTAACTAT
* *
14839667 TATTATTTAATAGTTATACAAA
1 TATTATATAATAGTAATACAAA
*
14839689 TATTATATAATA-TAATATAAA
1 TATTATATAATAGTAATACAAA
14839710 TA
1 TA
14839712 ATTAATCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TATTATATAATAGTAATACAAA
Found at i:14839753 original size:37 final size:39
Alignment explanation
Indices: 14839701--14839778 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
14839691 TTATATAATA
14839701 TAATATAAATAATTAA-T-CTTAAACAATATATTTAAAG
1 TAATATAAATAATTAACTACTTAAACAATATATTTAAAG
* * * **
14839738 TAATATTAATTATTAACTATTTAATTAATATATTTAAAG
1 TAATATAAATAATTAACTACTTAAACAATATATTTAAAG
14839777 TA
1 TA
14839779 TAAATCAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
37 14 0.41
38 1 0.03
39 19 0.56
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (39 bp):
TAATATAAATAATTAACTACTTAAACAATATATTTAAAG
Found at i:14840259 original size:25 final size:25
Alignment explanation
Indices: 14840232--14840288 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
14840222 AATTATCGGT
14840232 AATAATAATATATCAATAT-TATAA-T
1 AATAATAATAT-T-AATATATATAATT
* *
14840257 AATTATAATATTAATATATTTAATT
1 AATAATAATATTAATATATATAATT
14840282 AATAATA
1 AATAATA
14840289 TTTAGTCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.19
24 5 0.19
25 17 0.63
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
AATAATAATATTAATATATATAATT
Found at i:14840410 original size:19 final size:20
Alignment explanation
Indices: 14840376--14840416 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
14840366 ATAAAAAATA
*
14840376 ATTTTAAAATATTATTAACT
1 ATTTTAAAATAATATTAACT
*
14840396 ATTTT-AAATAATATTTACT
1 ATTTTAAAATAATATTAACT
14840415 AT
1 AT
14840417 ATAAACAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTTAAAATAATATTAACT
Found at i:14841357 original size:182 final size:177
Alignment explanation
Indices: 14840878--14841445 Score: 617
Period size: 182 Copynumber: 3.1 Consensus size: 177
14840868 TTAATAAGAC
* * *
14840878 AATTAATAAGTAAAAG-ATTTAAAAAATAAATCCATTTATCAAACAAATTCAAATTGCTATGACT
1 AATTAATAAGTAAAAGAATTTAAAAAATAAAT--ATTTATCAAACAAGTTCAAATAGTTATGACT
* * * * * *
14840942 ATCTAAATAATTATTTATTTCAAATTC-TTATTAATTTTTTCTTTTGTCATAAAACAATTATTTT
64 ATCTTAATAATTATCTATTTCAAA-TCATTA-TAA-ATTTTGTTTTGTCATAAAACAATTGTTTC
* * * * * * * *
14841006 TGTCCATAAAAGCTTATTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
126 TATTCAT-TAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * *
14841060 AATTAATAAGTAAAATATTTTTAAAAAAT-AA-ATTTACCAAACAAGTTCAAATAGTCATGACTA
1 AATTAATAAGTAAAAGA-ATTTAAAAAATAAATATTTATCAAACAAGTTCAAATAGTTATGACTA
* * * *
14841123 T-TTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAA
65 TCTT-AATAATTATCTATTTCAAATCATTATAA-ATTTTGTTTTGTCATAAAACAATTGTTTCTA
*
14841187 TTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
128 TTCAT-TAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * *
14841239 AATTAAAAAGTAAGAGAATTAAAAAAATAAATATGTTTATCAAACAAGTTCAAATAGTTATGATT
1 AATTAATAAGTAAAAGAATTTAAAAAATAAATA--TTTATCAAACAAGTTCAAATAGTTATGACT
* * *
14841304 ATCTTAATAATTATCTATTTCAAAACATTACAAAGTTTTGTTTTGTCATAAAACAATTGGTTCTA
64 ATCTTAATAATTATCTATTTCAAATCATTATAAA-TTTTGTTTTGTCATAAAACAATTGTTTCTA
* *
14841369 TTCATTCAAGCTTATTTCAAATAAAATAATATAAATTTATTAATGTTCCAAA
128 TTCATT-AAGCTTATTTGAAATAAAATAATAT-AATTTATTAATATTCCAAA
*
14841421 AATTAATAAGTAAAA-ATTTTAAAAA
1 AATTAATAAGTAAAAGAATTTAAAAA
14841446 TTAATGTTCC
Statistics
Matches: 323, Mismatches: 51, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
178 9 0.03
179 88 0.27
180 48 0.15
181 11 0.03
182 153 0.47
183 4 0.01
184 10 0.03
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.40
Consensus pattern (177 bp):
AATTAATAAGTAAAAGAATTTAAAAAATAAATATTTATCAAACAAGTTCAAATAGTTATGACTAT
CTTAATAATTATCTATTTCAAATCATTATAAATTTTGTTTTGTCATAAAACAATTGTTTCTATTC
ATTAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:14841727 original size:21 final size:22
Alignment explanation
Indices: 14841687--14841741 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 22
14841677 AATTTTGTAA
*
14841687 TAATTAATATTATCAATTTAGTTGT
1 TAATTAATA-T-T-AATTTAGTTAT
*
14841712 T-ATTAATATTAATTTATTTAT
1 TAATTAATATTAATTTAGTTAT
14841733 TAATTAATA
1 TAATTAATA
14841742 AAAATGATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 10 0.37
22 8 0.30
23 1 0.04
24 7 0.26
25 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (22 bp):
TAATTAATATTAATTTAGTTAT
Found at i:14841910 original size:14 final size:15
Alignment explanation
Indices: 14841886--14841914 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14841876 TAATAACTAT
14841886 ATATCATAATAAAAA
1 ATATCATAATAAAAA
14841901 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
14841915 TTATTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:14841985 original size:18 final size:18
Alignment explanation
Indices: 14841931--14842009 Score: 72
Period size: 18 Copynumber: 4.3 Consensus size: 18
14841921 ATTATTATAT
*
14841931 TTTAAA-TAATATAATTCA
1 TTTAAATTAA-ATAATTAA
*
14841949 TTGTTAATTATAATAATTAA
1 TT-TAAATTA-AATAATTAA
*
14841969 TTTAACATTATAT-ATTAA
1 TTTAA-ATTAAATAATTAA
*
14841987 TATAAATTAAATAATTAA
1 TTTAAATTAAATAATTAA
14842005 TTTAA
1 TTTAA
14842010 TTTATTAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.12
18 20 0.41
19 7 0.14
20 15 0.31
21 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (18 bp):
TTTAAATTAAATAATTAA
Found at i:14842284 original size:20 final size:20
Alignment explanation
Indices: 14842259--14842297 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14842249 AATTAAAACT
*
14842259 ATAATTTATTAGTAATATTG
1 ATAATTTAATAGTAATATTG
*
14842279 ATAATTTAATATTAATATT
1 ATAATTTAATAGTAATATT
14842298 TAATTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATAATTTAATAGTAATATTG
Found at i:14842823 original size:15 final size:15
Alignment explanation
Indices: 14842788--14842837 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
14842778 TATTTAAAGT
14842788 TATT-ATATTAAA-A
1 TATTAATATTAAATA
* *
14842801 AATATAATATTAATTA
1 TAT-TAATATTAAATA
14842817 TATTAATATTAAATA
1 TATTAATATTAAATA
14842832 TATTAA
1 TATTAA
14842838 AATGTTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 2 0.07
14 1 0.03
15 24 0.80
16 3 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TATTAATATTAAATA
Found at i:14842869 original size:19 final size:20
Alignment explanation
Indices: 14842847--14842887 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14842837 AAATGTTAAA
*
14842847 TAATTATTGAT-AATATAAT
1 TAATTATTCATAAATATAAT
*
14842866 TAATTGTTCATAAATATAAT
1 TAATTATTCATAAATATAAT
14842886 TA
1 TA
14842888 TAAATATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (20 bp):
TAATTATTCATAAATATAAT
Found at i:14842956 original size:20 final size:19
Alignment explanation
Indices: 14842904--14842967 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
14842894 TTATTAATAG
*
14842904 TTATTTAATTATACT-TAA
1 TTATTTATTTATACTATAA
*
14842922 GTATATTATTATATACTATAA
1 TTAT-TTATT-TATACTATAA
14842943 TTATTTACTTTATA-TATTAA
1 TTATTTA-TTTATACTA-TAA
14842963 TTATT
1 TTATT
14842968 GATATACTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 3 0.08
19 6 0.16
20 21 0.55
21 8 0.21
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (19 bp):
TTATTTATTTATACTATAA
Found at i:14843700 original size:21 final size:22
Alignment explanation
Indices: 14843650--14843705 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
14843640 ATAGCATAAC
*
14843650 AATATTAATAAGTATATAATAT
1 AATATTAATAATTATATAATAT
*
14843672 ATTATTAATAATTA-ATAATAT
1 AATATTAATAATTATATAATAT
14843693 AA-ATTTAATAATT
1 AATA-TTAATAATT
14843706 GTTTATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 17 0.57
22 12 0.40
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
AATATTAATAATTATATAATAT
Found at i:14844151 original size:28 final size:29
Alignment explanation
Indices: 14844101--14844155 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
14844091 GTTAATTATG
* *
14844101 TTAATCTATGTTATAGATTAATATTATTT
1 TTAATCAATGTTATAGATCAATATTATTT
*
14844130 TTAATCAATGTTAT-TATCAATATTAT
1 TTAATCAATGTTATAGATCAATATTAT
14844156 AATTATAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.53
Consensus pattern (29 bp):
TTAATCAATGTTATAGATCAATATTATTT
Found at i:14844755 original size:61 final size:64
Alignment explanation
Indices: 14844690--14844825 Score: 138
Period size: 61 Copynumber: 2.2 Consensus size: 64
14844680 TTATAGTTAT
* *
14844690 ATTAATATTATTATATTAA-TATGAATTAATATTATTATAAATAGTAATAT-TTA-AAAT-AATA
1 ATTAATATTATTAAATTAAGTATGAATTAAT-TTATAATAAATAGTAATATATTATAAATAAATA
* * * * * *
14844751 ATTAACT-TAATTAAATTAAGTATTAATTGATTTATAATTATTATTAATATATTATAAATAAATA
1 ATTAA-TATTATTAAATTAAGTATGAATTAATTTATAATAAATAGTAATATATTATAAATAAATA
*
14844815 GTTAATATTAT
1 ATTAATATTAT
14844826 ATAATTTCAT
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
61 30 0.51
62 13 0.22
63 5 0.08
64 11 0.19
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.47
Consensus pattern (64 bp):
ATTAATATTATTAAATTAAGTATGAATTAATTTATAATAAATAGTAATATATTATAAATAAATA
Found at i:14845465 original size:41 final size:41
Alignment explanation
Indices: 14845357--14845485 Score: 179
Period size: 41 Copynumber: 3.2 Consensus size: 41
14845347 TTGAAAAAAT
* * * *
14845357 AAATAAAAGGCTCCTCTAAATAGAGGCTCAACGACTTTGAA
1 AAATAAAATGCTTCTCTAAATAGAGGCACAACAACTTTGAA
* * *
14845398 AGAT-AAATGCTTCTCTAAACAGAGGCACCACAACTTTGAA
1 AAATAAAATGCTTCTCTAAATAGAGGCACAACAACTTTGAA
*
14845438 AAATAAAATGCTTCTCTAAATATAGGCACAACAACTTTGAA
1 AAATAAAATGCTTCTCTAAATAGAGGCACAACAACTTTGAA
14845479 AAATAAA
1 AAATAAA
14845486 GGCTCATCGA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 33 0.43
41 43 0.57
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (41 bp):
AAATAAAATGCTTCTCTAAATAGAGGCACAACAACTTTGAA
Found at i:14845844 original size:9 final size:9
Alignment explanation
Indices: 14845830--14845887 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
14845820 ATACAATTTA
14845830 TTATATAAT
1 TTATATAAT
*
14845839 TTATATAAA
1 TTATATAAT
14845848 TTATAT-AT
1 TTATATAAT
14845856 TT-TATAAT
1 TTATATAAT
14845864 TGTCATATAAT
1 T-T-ATATAAT
*
14845875 ATAT-TAA-
1 TTATATAAT
14845882 TTATAT
1 TTATAT
14845888 GATATACAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
7 6 0.15
8 10 0.25
9 17 0.43
10 1 0.03
11 6 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (9 bp):
TTATATAAT
Found at i:14846088 original size:13 final size:13
Alignment explanation
Indices: 14846070--14846103 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14846060 AATAAATTTT
14846070 AAATAAAGAATTA
1 AAATAAAGAATTA
*
14846083 AAATAAATAATTA
1 AAATAAAGAATTA
*
14846096 AATTAAAG
1 AAATAAAG
14846104 TACTTATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (13 bp):
AAATAAAGAATTA
Found at i:14847173 original size:12 final size:12
Alignment explanation
Indices: 14847156--14847184 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14847146 TATTTAACTT
14847156 ATTAAATTTATA
1 ATTAAATTTATA
14847168 ATTAAATTTATA
1 ATTAAATTTATA
14847180 ATTAA
1 ATTAA
14847185 TAATAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAAATTTATA
Found at i:14847227 original size:22 final size:21
Alignment explanation
Indices: 14847202--14847251 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
14847192 TTATGATAAT
*
14847202 TATTATATTATATAA-TATTGTA
1 TATTATAATAT-TAATTATT-TA
14847224 TATTATAATATTAATTTATTTA
1 TATTATAATATTAA-TTATTTA
14847246 TATTAT
1 TATTAT
14847252 TAAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 18 0.72
23 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTATAATATTAATTATTTA
Found at i:14847274 original size:29 final size:28
Alignment explanation
Indices: 14847230--14847290 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
14847220 TGTATATTAT
* *
14847230 AATATTAATTTATTTATATTATTAAATA
1 AATATTAATTTATTTATAATAATAAATA
* *
14847258 AATATTAATATTGTTTATAATAATAAATT
1 AATATTAAT-TTATTTATAATAATAAATA
14847287 AATA
1 AATA
14847291 ATTTGTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (28 bp):
AATATTAATTTATTTATAATAATAAATA
Found at i:14847296 original size:25 final size:25
Alignment explanation
Indices: 14847254--14847302 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14847244 TATATTATTA
* *
14847254 AATAAATATTAATATTGTTTATAAT
1 AATAAATAATAATATTGTTAATAAT
14847279 AATAAATTAATAAT-TTGTTAATAA
1 AATAAA-TAATAATATTGTTAATAA
14847303 AGCAGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (25 bp):
AATAAATAATAATATTGTTAATAAT
Found at i:14847583 original size:6 final size:6
Alignment explanation
Indices: 14847569--14847660 Score: 63
Period size: 6 Copynumber: 15.5 Consensus size: 6
14847559 TAATAGATAA
* *
14847569 AATTA- AATTAT AATTAT AATTAT AATT-T AATT-T -ATTGAT AGTTTGT
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATT-AT A-ATTAT
14847615 AATTAT AATT-T ATATTAT AATTATT AA-TAT AAATT-T AAATTAT AAT
1 AATTAT AATTAT A-ATTAT AATTA-T AATTAT -AATTAT -AATTAT AAT
14847661 ATATTAATGA
Statistics
Matches: 72, Mismatches: 4, Indels: 21
0.74 0.04 0.22
Matches are distributed among these distances:
4 3 0.04
5 14 0.19
6 44 0.61
7 9 0.12
8 2 0.03
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (6 bp):
AATTAT
Found at i:14847677 original size:26 final size:25
Alignment explanation
Indices: 14847565--14847668 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 25
14847555 TATTTAATAG
*
14847565 ATAAAATTAAATTATAATTA-TAAT
1 ATAAATTTAAATTATAATTATTAAT
*
14847589 -TATAATTTAATTTATTGATAGTT-TGTAAT
1 ATA-AATTTAA---ATT-ATAATTAT-TAAT
*
14847618 -TATAATTTATATTATAATTATTAAT
1 ATA-AATTTAAATTATAATTATTAAT
14847643 ATAAATTTAAATTATAATATATTAAT
1 ATAAATTTAAATTATAAT-TATTAAT
14847669 GATTATTTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
23 2 0.03
24 6 0.09
25 23 0.35
26 13 0.20
27 3 0.05
28 5 0.08
29 13 0.20
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (25 bp):
ATAAATTTAAATTATAATTATTAAT
Found at i:14848361 original size:15 final size:15
Alignment explanation
Indices: 14848338--14848446 Score: 64
Period size: 15 Copynumber: 7.1 Consensus size: 15
14848328 TATATACAAT
14848338 TATTAAATATTAATTA
1 TATT-AATATTAATTA
* *
14848354 TTTTAATATAATAATAA
1 TATTAATAT--TAATTA
*
14848371 TTATTATTATATAATT-
1 -TATTAATAT-TAATTA
*
14848387 TGTTAAT-TTAAGTTA
1 TATTAATATTAA-TTA
** *
14848402 TATTAATAACATTTA
1 TATTAATATTAATTA
14848417 TATTAATATT-A-TA
1 TATTAATATTAATTA
*
14848430 TATTAATAATAATTA
1 TATTAATATTAATTA
14848445 TA
1 TA
14848447 AATAATAATA
Statistics
Matches: 70, Mismatches: 15, Indels: 17
0.69 0.15 0.17
Matches are distributed among these distances:
13 14 0.20
14 4 0.06
15 31 0.44
16 4 0.06
17 10 0.14
18 7 0.10
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (15 bp):
TATTAATATTAATTA
Found at i:14848366 original size:20 final size:20
Alignment explanation
Indices: 14848343--14848385 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
14848333 ACAATTATTA
*
14848343 AATATTAATTATT-TTAATAT
1 AATAATAATTATTATT-ATAT
14848363 AATAATAATTATTATTATAT
1 AATAATAATTATTATTATAT
14848383 AAT
1 AAT
14848386 TTGTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATAATAATTATTATTATAT
Done.