Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 72 of 160
Found at i:14848445 original size:28 final size:28
Alignment explanation
Indices: 14848400--14848539 Score: 96
Period size: 28 Copynumber: 5.0 Consensus size: 28
14848390 TAATTTAAGT
* * * *
14848400 TATATTAATAACATTTATATTAATATTA
1 TATATTAATAATAATTATAATAATAATA
14848428 TATATTAATAATAATTATAAATAATAATA
1 TATATTAATAATAATTAT-AATAATAATA
14848457 T-TATTAA-AATGAATTATAAT-ATAATCA
1 TATATTAATAAT-AATTATAATAATAAT-A
* *
14848484 TAATATT-ATAATTTGATTATAAT-TTAAT-
1 T-ATATTAATAA--TAATTATAATAATAATA
*
14848512 TAATATTAACTAATAATT-TACTAATAAT
1 T-ATATTAA-TAATAATTATAATAATAAT
14848540 TATTTTATAT
Statistics
Matches: 92, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
26 5 0.05
27 11 0.12
28 44 0.48
29 16 0.17
30 15 0.16
31 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (28 bp):
TATATTAATAATAATTATAATAATAATA
Found at i:14848591 original size:14 final size:13
Alignment explanation
Indices: 14848574--14848607 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
14848564 GCAATAATTG
*
14848574 ATAATTAATAGATT
1 ATAATTAATAG-TA
14848588 ATAATTAATAGTA
1 ATAATTAATAGTA
14848601 ATAATTA
1 ATAATTA
14848608 TTAAACTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (13 bp):
ATAATTAATAGTA
Found at i:14848767 original size:16 final size:17
Alignment explanation
Indices: 14848746--14848778 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14848736 TACCAATTTG
14848746 AAATAG-ATAACTATTC
1 AAATAGCATAACTATTC
14848762 AAATAGTCATAACTATT
1 AAATAG-CATAACTATT
14848779 TGAACTGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
AAATAGCATAACTATTC
Found at i:14849199 original size:23 final size:25
Alignment explanation
Indices: 14849147--14849201 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
14849137 CTGGATAAAC
*
14849147 AAATTTATTTTTTAAATCTTTAAGT
1 AAATTAATTTTTTAAATCTTTAAGT
* *
14849172 -TATTAATTTTTTGAAT-TTTAA-T
1 AAATTAATTTTTTAAATCTTTAAGT
14849194 AAATTAAT
1 AAATTAAT
14849202 ATTATTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 11 0.44
24 13 0.52
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (25 bp):
AAATTAATTTTTTAAATCTTTAAGT
Found at i:14849538 original size:359 final size:354
Alignment explanation
Indices: 14848704--14849851 Score: 1105
Period size: 360 Copynumber: 3.2 Consensus size: 354
14848694 TATGTGAATA
* * * *
14848704 GAAACAATTATTTTATGACAAAA-CAAAGATCATACCAATTTGAAATAGATAACTATTCAAATAG
1 GAAACAATTATTTTATGACAAAATAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAG
* * * * *
14848768 TCATAACTATTTGAACTGGTCTGGTAAAAAAATTTAGTTTTTAAATC---T-CTTATTAATTTTT
66 TCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTT
** * ** *
14848829 AAAATATTAATAAAATAGTATTATTTTATTCTAAATAA-TTTTGTATGAGTAGAAACAATTGTTT
131 TGAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCCTT-TATGAATAGAAACAATTG-TT
* * * * *
14848893 TATGGCAAAACAAAATGTCCTAATGATTTGAAATAAATAA-TAGTTTAAAT-G---GAC-A--TG
194 TATGAC-AAA-AAAATGTCATAACGATTTGAAATAGATAATTA-TTTAAATAGTATAACTATTTG
* * * * * *
14848950 -ACTTATTCAGTAAACATATTTATTATTTAAATCTCCAACTTATTAATTTTTAGATTATTAATAA
256 AACTTATTTAGAAAACATATTTATTTTTTAAATTTTC-ACTTATTAA--TTTAGAATATTAATAA
* ** * * *
14849014 A-TTAGTATTATCTTATTTTGAGTAAACTTGTATGAATA
318 ATTTA-TATTATTTTATTCAGAATAAGCTTGTATGAA-C
** * * * *
14849052 GAAATTATTGTTTTATGA-AAAATCAAAATATCATAACAATTTGAAATAAAATAATTATTTAAGT
1 GAAACAATTATTTTATGACAAAAT-AAAAGATCATAACAATTTGAAAT-AAATAATTATTCAAAT
* * * * *
14849116 AGTCATAACTATTTGAATTTGCTGGATAAACAAATTTATTTTTTAAATCTTTAAGTTATTAATTT
64 AGTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTT
* *
14849181 TTTGAATTTTAATAAATTAATATTATTTTATTCTAAATAAGCCTTTATGAATAGAAACAATTAGT
129 TTTGAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCCTTTATGAATAGAAACAATT-GT
* *
14849246 GTATGACAAAAAAATGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
193 TTATGACAAAAAAATGTCATAACGATTTGAAATAGATAATTATTTAAATAGT-ATAACTATTTGA
* * * *
14849311 ACGTGTTTAGAAAATATATTTATTTTTTAAATTTTCACTTATTAATCCTTAGAATATTAGTAAAT
257 ACTTATTTAGAAAACATATTTATTTTTTAAATTTTCACTTATTAAT--TTAGAATATTAATAAAT
*
14849376 TTATATTATTTTATTCAAAATAAGCTTGTATGAAC
320 TTATATTATTTTATTCAGAATAAGCTTGTATGAAC
* * ** * *
14849411 GTAAACAATTATTTTATGACAAAATAAAAGGTCTTAATGATTTGAAATAGATAATTGTTCAAATA
1 G-AAACAATTATTTTATGACAAAATAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATA
* * * *
14849476 GTCATAGCTATTTGAACTTGTTTGATAAACAGATTCATTTTTTAAATCTTTTACTCATTAATTTT
65 GTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * * * * *
14849541 TTGAATATTAATAAGTTAGTATTGTTTTATT-TCAAATAAGCCTATATAAATTGATACAATTTTT
130 TTGAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCCTTTATGAATAGAAACAATTGTT
* * * *
14849605 TATGA-AAAACAAAAGATCAAAACAATTTGAAATAGATAATTATTTAAATAGTTATTACTATTTG
194 TATGACAAAA-AAATG-TCATAACGATTTGAAATAGATAATTATTTAAATAG-TATAACTATTTG
* * * * *
14849669 AATTTATTT-GATAAACATAATTATTTTTTAAATCTTTTATTTATTAATTATCGAAATATTAATA
256 AACTTATTTAGA-AAACATATTTATTTTTTAAAT-TTTCACTTATTAATT-TAG-AATATTAATA
* * * *
14849733 AATTAATATTATTTTAATCCGAATAAGCTTTTATGAAC
317 AATTTATATTATTTTATTCAGAATAAGCTTGTATGAAC
* * * * * *
14849771 AAAAATAATTGTTTTACGACAAAACAAAAGGTCATAA-AGATTTGAAATAAATAATTATTCAAAT
1 -GAAACAATTATTTTATGACAAAATAAAAGATCATAACA-ATTTGAAATAAATAATTATTCAAAT
*
14849835 AGTCATAAATATTTGAA
64 AGTCATAACTATTTGAA
14849852 TTTATTCGGT
Statistics
Matches: 653, Mismatches: 113, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
347 4 0.01
348 15 0.02
349 20 0.03
350 53 0.08
352 32 0.05
353 6 0.01
354 67 0.10
355 3 0.00
357 6 0.01
358 16 0.02
359 190 0.29
360 205 0.31
361 36 0.06
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (354 bp):
GAAACAATTATTTTATGACAAAATAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAG
TCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTT
TGAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCCTTTATGAATAGAAACAATTGTTTA
TGACAAAAAAATGTCATAACGATTTGAAATAGATAATTATTTAAATAGTATAACTATTTGAACTT
ATTTAGAAAACATATTTATTTTTTAAATTTTCACTTATTAATTTAGAATATTAATAAATTTATAT
TATTTTATTCAGAATAAGCTTGTATGAAC
Found at i:14849668 original size:179 final size:181
Alignment explanation
Indices: 14848698--14849851 Score: 1020
Period size: 179 Copynumber: 6.5 Consensus size: 181
14848688 TAAGTTTATG
* * *
14848698 TGAATAGAAACAATTATTTTATGACAAAAC-AAAGATCATACCAATTTGAAATAGATAACTATTC
1 TGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATTC
* * * * *
14848762 AAATAGTCATAACTATTTGAACTGGTCTGGTAAAAAAATTTAGTTTTTAAATC---T-CTTATTA
66 AAATAGTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTA
** * * * **
14848823 ATTTTTAAAATATTAATAAAATAGTATTATTTTATTCTAAATAA-TTTTGTA
131 ATTTTTTGAATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTT-TA
* * * * * *
14848874 TGAGTAGAAACAATTGTTTTATGGCAAAACAAAATG-TCCTAATGATTTGAAATAAATAA-TAGT
1 TGAATAGAAACAATTATTTTATGACAAAACAAAA-GATCATAACGATTTGAAATAGATAATTA-T
* * * * * * ***
14848937 TTAAAT-G----GAC-A--TG-ACTT-ATTCAGTAAACATATTTATTATTTAAATCTCCAACTTA
64 TCAAATAGTCATAACTATTTGAACTTGTTTGA-TAAACAAATTTATTTTTTAAATCTTTTACTTA
* * * * *** * *
14848992 TTAATTTTTAGATTATTAATAAATTAGTATTATCTTATTTTGAGTAA-ACTTGTA
128 TTAATTTTTTGAATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTT-TA
** * * * *
14849046 TGAATAGAAATTATTGTTTTATGA-AAAATCAAAATATCATAACAATTTGAAATAAAATAATTAT
1 TGAATAGAAACAATTATTTTATGACAAAA-CAAAAGATCATAACGATTTGAAAT-AGATAATTAT
* * * * * * *
14849110 TTAAGTAGTCATAACTATTTGAATTTGCTGGATAAACAAATTTATTTTTTAAATCTTTAAGTTAT
64 TCAAATAGTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTAT
* *
14849175 TAATTTTTTGAATTTTAATAAATTAATATTATTTTATTCTAAATAAGCCTTTA
129 TAATTTTTTGAATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTTTA
* * *
14849228 TGAATAGAAACAATTAGTGTATGACAAAA-AAATG-TCATAACGATTTGAAATAGATAATTATTC
1 TGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATTC
* * * *
14849291 AAATAGTCATAACTATTTGAACGTGTTTAGA-AAATATATTTATTTTTTAAAT-TTTCACTTATT
66 AAATAGTCATAACTATTTGAACTTGTTT-GATAAACAAATTTATTTTTTAAATCTTTTACTTATT
** * * *
14849354 AATCCTTAGAATATTAGTAAATTTATATTATTTTATTCAAAATAAG-CTTGTA
130 AATTTTTTGAATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTT-TA
* * * * * *
14849406 TGAA-CGTAAACAATTATTTTATGACAAAATAAAAGGTCTTAATGATTTGAAATAGATAATTGTT
1 TGAATAG-AAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATT
* * * *
14849470 CAAATAGTCATAGCTATTTGAACTTGTTTGATAAACAGATTCATTTTTTAAATCTTTTACTCATT
65 CAAATAGTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * *
14849535 AATTTTTTGAATATTAATAAGTTAGTATTGTTTTATTTC-AAATAAGCCTATA
130 AATTTTTTGAATATTAATAAATTAATATTATTTTA-TTCAAAATAAGCCTTTA
* * * * * *
14849587 TAAATTGATACAATT-TTTTATGA-AAAACAAAAGATCAAAACAATTTGAAATAGATAATTATTT
1 TGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATTC
* * * * *
14849650 AAATAGTTATTACTATTTGAATTTATTTGATAAACATAA-TTATTTTTTAAATCTTTTATTTATT
66 AAATAGTCATAACTATTTGAACTTGTTTGATAAACA-AATTTATTTTTTAAATCTTTTACTTATT
* * * ** *
14849714 AA-TTATCGAAATATTAATAAATTAATATTATTTTAATCCGAATAAGCTTTTA
130 AATTTTTTG-AATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTTTA
* * * * * * * *
14849766 TGAACAAAAATAATTGTTTTACGACAAAACAAAAGGTCATAAAGATTTGAAATAAATAATTATTC
1 TGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATTC
*
14849831 AAATAGTCATAAATATTTGAA
66 AAATAGTCATAACTATTTGAA
14849852 TTTATTCGGT
Statistics
Matches: 788, Mismatches: 151, Indels: 73
0.78 0.15 0.07
Matches are distributed among these distances:
167 1 0.00
168 22 0.03
169 2 0.00
171 5 0.01
172 90 0.11
173 12 0.02
174 3 0.00
176 30 0.04
177 31 0.04
178 83 0.11
179 188 0.24
180 104 0.13
181 112 0.14
182 96 0.12
183 9 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (181 bp):
TGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTATTC
AAATAGTCATAACTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTTTTACTTATTA
ATTTTTTGAATATTAATAAATTAATATTATTTTATTCAAAATAAGCCTTTA
Found at i:14849901 original size:120 final size:120
Alignment explanation
Indices: 14849754--14849990 Score: 309
Period size: 120 Copynumber: 2.0 Consensus size: 120
14849744 TTTTAATCCG
*
14849754 AATAAGCTTTTATGAACAAAAATAATTGTTTTACGACAAAACAAAAGGTCATA-AAGATTTGAAA
1 AATAAGCTTTTATGAACAAAAATAATTGTTTTACGAAAAAACAAAAGGTCATAGAA-ATTTGAAA
* * *
14849818 TAAATAATTATTCAAATAGTCATAAATATTTGAATTTATTCGGTAAATAGATTTGA
65 TAAATAATTATTCAAATAGCCATAAATATTTGAACTTATTCAGTAAATAGATTTGA
* * * *
14849874 AATAAG-TTTGTATGAATAGAAAA-AATTGTTTTATGAAAAAACATAAGGTCATAGCAATTTGAA
1 AATAAGCTTT-TATGAACA-AAAATAATTGTTTTACGAAAAAACAAAAGGTCATAGAAATTTGAA
* * * * *
14849937 ATAGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCATTAAATAGATT
64 ATAAATAATTATTCAAATAGCCATAAATATTTGAACTTATTCAGTAAATAGATT
14849991 CATTTTTTAA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.03
120 93 0.92
121 5 0.05
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (120 bp):
AATAAGCTTTTATGAACAAAAATAATTGTTTTACGAAAAAACAAAAGGTCATAGAAATTTGAAAT
AAATAATTATTCAAATAGCCATAAATATTTGAACTTATTCAGTAAATAGATTTGA
Found at i:14850185 original size:181 final size:181
Alignment explanation
Indices: 14849874--14850201 Score: 435
Period size: 181 Copynumber: 1.8 Consensus size: 181
14849864 ATAGATTTGA
* * * *
14849874 AATAAGTTTGTATGAATAGAAAAAATTGTTTTATGAAAAAACATAAGGTCATAGCAATTTGAAAT
1 AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGAAAAAACAAAAGGTCATAACAATTTGAAAT
* * * * * * *
14849939 AGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCATTAAATAGATTCATTTTTTAAATC
66 AGATAATTGTTCAAACAACCATAACTATTTGAACTTGATCACTAAACAGATACATTTTCTAAATC
* *
14850004 CCTTACTTGTAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
131 CATTACTTATAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
* * *
14850055 AATAAGCTTGTATGAACAGAAACAATTGTTTTGTGATAAAACAAAAGGTCATAACAATTTGAAAT
1 AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGAAAAAACAAAAGGTCATAACAATTTGAAAT
* * * *
14850120 AGATATTTGTTCAAGCAATCATAACTATTTGCA-TTGATCAGGCT-AACAGATACATTTTCTAAA
66 AGATAATTGTTCAAACAACCATAACTATTTGAACTTGATCA--CTAAACAGATACATTTTCTAAA
*
14850183 TCCATTACTTATTAATTTT
129 TCCATTACTTATAAATTTT
14850202 GAATTAGCAT
Statistics
Matches: 124, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
180 6 0.05
181 117 0.94
182 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (181 bp):
AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGAAAAAACAAAAGGTCATAACAATTTGAAAT
AGATAATTGTTCAAACAACCATAACTATTTGAACTTGATCACTAAACAGATACATTTTCTAAATC
CATTACTTATAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
Found at i:14851022 original size:320 final size:321
Alignment explanation
Indices: 14850456--14851071 Score: 779
Period size: 320 Copynumber: 1.9 Consensus size: 321
14850446 TAACGATTTA
*
14850456 AAATAGATAATTGTTCAAATATTCATAATTATTTGAACTGCTTCGACTAACAAAATTATATTTTT
1 AAATAGATAATTGTTCAAATATTCATAATTATTTGAACTGCTTCGAATAACAAAATTATATTTTT
*
14850521 AATCTCTTACTTATTAATTTTTGAAATATTAATACATTCAATTTTTTTATTCTGAATAAGTTAGT
66 AATCTCTTAC-TA-TAATTTTTGAAATATTAATAAATTCAATTTTTTTATTCTGAATAAGTTAGT
* * * ** *
14850586 AAGAGCTAAAAAAATTGCTTTACAATAAAATAAAATGTCATAAGTATTTGAAATAGATAATTATT
129 AAGAGCTAAAAAAATTGCTTTACAACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTATT
* * * *** * *
14850651 TATATAGCCTTAACCATTTGAAGTGGTTTGGCAAACAAATTTATTTTTTAAATCTTTTAGTTATT
194 CATATAGCCTTAACCATTTAAACTGGTTCAACAAACAAATTTATTTTTTAAATCTCTTAGTTATG
*
14850716 AATTGTC-AAAATATTATT-TTATTAGTATTATTTTATGACAAAATAAAAGGTTATGACACATTG
259 AATT-TCTAAAATATTATTAAT-TTAGTATTATTTTATGACAAAATAAAAGGTTATGACACATTG
* * *
14850779 AAATATATAATTGTTCTAATAGTT-ATAATTATTTGAACTAG-TTC-AATAAATAAAATTAT-TT
1 AAATAGATAATTGTTCAAATA-TTCATAATTATTTGAACT-GCTTCGAAT-AACAAAATTATATT
*
14850840 TTTAAATCTCTTA-TA-AATTTTTGAAATATTAATAAATT-AGTTTTATTTTATTAC-GAATAAG
63 TTT-AATCTCTTACTATAATTTTTGAAATATTAATAAATTCA-ATTT-TTTTATT-CTGAATAAG
* * * *
14850901 CTT-GTATA-AGCTGAAATAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAGAT
124 -TTAGTA-AGAGCTAAAAAAATTGCTTTACAACAAAACAAAAGGTCATAACAATTTAAAATAGAT
* *
14850964 AATTATTCATATAGTCTTAACTATTTAAACTGGTTCAACAAACAAATTTATTTTTTAAATCTCTT
187 AATTATTCATATAGCCTTAACCATTTAAACTGGTTCAACAAACAAATTTATTTTTTAAATCTCTT
*
14851029 AGTTATGAATTTCTAGAATATTATTAATTTAGTATTATTTTAT
252 AGTTATGAATTTCTAAAATATTATTAATTTAGTATTATTTTAT
14851072 TTTGAATAAA
Statistics
Matches: 254, Mismatches: 28, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
318 1 0.00
319 27 0.11
320 153 0.60
321 7 0.03
322 7 0.03
323 56 0.22
324 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (321 bp):
AAATAGATAATTGTTCAAATATTCATAATTATTTGAACTGCTTCGAATAACAAAATTATATTTTT
AATCTCTTACTATAATTTTTGAAATATTAATAAATTCAATTTTTTTATTCTGAATAAGTTAGTAA
GAGCTAAAAAAATTGCTTTACAACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTATTCA
TATAGCCTTAACCATTTAAACTGGTTCAACAAACAAATTTATTTTTTAAATCTCTTAGTTATGAA
TTTCTAAAATATTATTAATTTAGTATTATTTTATGACAAAATAAAAGGTTATGACACATTG
Found at i:14851119 original size:181 final size:177
Alignment explanation
Indices: 14850742--14851310 Score: 557
Period size: 177 Copynumber: 3.2 Consensus size: 177
14850732 TTTTATTAGT
* * * *
14850742 ATTATTTTATGACAAAATAAAAGGTTATGACACA-TTGAAATATATAATTGTTC-TAATAGT-TA
1 ATTATTTTATGACAAAACAAAAGGTTATAACA-ATTTGAAATAGATAATTATTCAT-ATAGTCT-
* * *
14850804 TAATTATTTGAACTAGTTCAATAAATAAAATTATTTTTTAAATCTCTTATA-AATTT-TTGAAAT
63 TAATTATTTGAACTAGTTCAATAAACAAATTTATTTTTTAAATCTCTTATATAATTTCTAG-AAT
* ** * * **
14850867 ATTAATAAATTAGTTTTATTTTATTACGAATAAGCTTGTATAAGCTGAAATA
127 ATTAATAAATTAGTATTATTTTATTTTGAATAAACTTATATAA-CAAAAATA
* * * *
14850919 ATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTATTCATATAGTCTTAA
1 ATTATTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCATATAGTCTTAA
* * * *
14850984 CTATTTAAACTGGTTCAACAAACAAATTTATTTTTTAAATCTCTTAGTTATGAATTTCTAGAATA
66 TTATTTGAACTAGTTCAATAAACAAATTTATTTTTTAAATCTCTTA--TAT-AATTTCTAGAATA
* * * *
14851049 TTATTAATTTAGTATTATTTTATTTTGAATAAATTTATATGAACAAAAATT
128 TTAATAAATTAGTATTATTTTATTTTGAATAAACTTATAT-AACAAAAATA
** * * *
14851100 ATTATTTTATGACAAAACAAAATATTATAACAATTTGATATAGATAATTATTCAAATAGTCATAA
1 ATTATTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCATATAGTCTTAA
*** * * *
14851165 TTATTTGAACTTA-TTTGGTAAACATATTTATTTTTTGAATCTC--ATACTAA-TTCTTAAAATA
66 TTATTTGAAC-TAGTTCAATAAACAAATTTATTTTTTAAATCTCTTATA-TAATTTC-TAGAATA
* * *
14851226 TTAATAAATTAGTATTATTTTA-TTTCAGATAAACTTATACATTCAAAAATA
128 TTAATAAATTAGTATTATTTTATTTTGA-ATAAACTTATATA-ACAAAAATA
*
14851277 ATTGTTTTATGACAAAACAAAAGG-TACTAACAAT
1 ATTATTTTATGACAAAACAAAAGGTTA-TAACAAT
14851311 CTTATTTCAA
Statistics
Matches: 322, Mismatches: 55, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
176 11 0.03
177 166 0.52
178 3 0.01
179 3 0.01
181 134 0.42
182 5 0.02
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (177 bp):
ATTATTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCATATAGTCTTAA
TTATTTGAACTAGTTCAATAAACAAATTTATTTTTTAAATCTCTTATATAATTTCTAGAATATTA
ATAAATTAGTATTATTTTATTTTGAATAAACTTATATAACAAAAATA
Found at i:14852082 original size:360 final size:362
Alignment explanation
Indices: 14851513--14852316 Score: 830
Period size: 360 Copynumber: 2.2 Consensus size: 362
14851503 TTTGTGAACT
*
14851513 AAAACAATTGTTTTATGACAAAACAAAAATTCACAACGATTTTAAATAGATAATTGTTCAAATAG
1 AAAACAATTGTTTTATGACAAAACAAAAATTCACAACGATTTGAAATAGATAATTGTTCAAATAG
* ** *
14851578 TCATAACTATTTGAACTTGTTCGGTAAACAAATTTAGTTTTTCAAATATCCTGCTTATTAATCTT
66 TCATAACTATTAGAACTTGTTCGAAAAACAAATTTAGTTTTTCAAATATCCTGCTTAATAATCTT
* *
14851643 TCAAAAGTCAATAAATTAGAATTATTTTCTTTCGTATAAGTTTGTATGAACTAAAACAATTATTT
131 TCAAAAGTCAATAAAGTAGAATTATTTTATTTCGTATAAGTTTGTATGAACTAAAACAATTATTT
** * *
14851708 TATGATTAAACAAAAGGT-AAGAATGATTTGAAATAAATAATTATTGT-AATAATCTTAACTATT
196 TATGACAAAACAAAAGGTCAA-AATAATTTGAAATAAATAATTATT-TAAATAATCATAACTATT
* * *
14851771 TG-AACTGATC-GATAAACACATTTATTTTTT-AAATCTTTTACTTATTAATTTTCAAAATATT-
259 TGAAACTGATCAG-CAAACACATTTATTTTTTAAAATCTCTTACTT-TAAATTTTC-AAATATTG
*
14851832 ATTAAATTAGTATTGTTTTTATCTAAATCAGCTTATATGATAG
321 A-TAAATTAGTATTATTTTTATCTAAATCAGCTTATATGATAG
* * * * *
14851875 AAAATAATTGTTTTATGACAAAACAAAGA-TCATAACGATTTGAGATTA-ATATTTGTTCAAATA
1 AAAACAATTGTTTTATGACAAAACAAAAATTCACAACGATTTGA-AATAGATAATTGTTCAAATA
* * ** * * *
14851938 GTTATAACTATTAGAA-TTGCTTTGAAAAACAGCTTTAGTTTTT-AAATCTCTTGCTTAATAATT
65 GTCATAACTATTAGAACTTG-TTCGAAAAACAAATTTAGTTTTTCAAATATCCTGCTTAATAATC
* * * * * *
14852001 TTTGAAATA-TTAATAAAGTAGTATTATTTTATTTCAG-ATAAGTTTTTATTAACTGAAACAATT
129 TTTCAAA-AGTCAATAAAGTAGAATTATTTTATTTC-GTATAAGTTTGTATGAACTAAAACAATT
* * * * * *
14852064 GTTTTATGACAAAACAAAATGTCAAAATAATTTTAAATAGATAATTATTTAAATTATCATATCTA
192 ATTTTATGACAAAACAAAAGGTCAAAATAATTTGAAATAAATAATTATTTAAATAATCATAACTA
* * * * *
14852129 TTTGAAATTGTTCAGCAAACATATTTATTTTTTAAAATCTCTTGCTTTAAATTTTCAAATGTTGA
257 TTTGAAACTGATCAGCAAACACATTTATTTTTTAAAATCTCTTACTTTAAATTTTCAAATATTGA
* * * * *
14852194 TAAATTAGTATTA-TTTTATTCCAAATAAACTTGTATGA-ACT
322 TAAATTAGTATTATTTTTA-TCTAAATCAGCTTATATGATA-G
* * * * * * * * *
14852235 AAAATAATTATTTTATAACTAAAC-AAAATGAT-AAAATGATTTGAAAGAGATAATTATTCTAAT
1 AAAACAATTGTTTTATGACAAAACAAAAAT--TCACAACGATTTGAAATAGATAATTGTTCAAAT
* *
14852298 AGTCTTAACTATTTGAACT
64 AGTCATAACTATTAGAACT
14852317 AATTTAGCTA
Statistics
Matches: 362, Mismatches: 63, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
359 10 0.03
360 180 0.50
361 128 0.35
362 44 0.12
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (362 bp):
AAAACAATTGTTTTATGACAAAACAAAAATTCACAACGATTTGAAATAGATAATTGTTCAAATAG
TCATAACTATTAGAACTTGTTCGAAAAACAAATTTAGTTTTTCAAATATCCTGCTTAATAATCTT
TCAAAAGTCAATAAAGTAGAATTATTTTATTTCGTATAAGTTTGTATGAACTAAAACAATTATTT
TATGACAAAACAAAAGGTCAAAATAATTTGAAATAAATAATTATTTAAATAATCATAACTATTTG
AAACTGATCAGCAAACACATTTATTTTTTAAAATCTCTTACTTTAAATTTTCAAATATTGATAAA
TTAGTATTATTTTTATCTAAATCAGCTTATATGATAG
Found at i:14852332 original size:180 final size:179
Alignment explanation
Indices: 14851312--14852348 Score: 662
Period size: 180 Copynumber: 5.8 Consensus size: 179
14851302 ACTAACAATC
** *
14851312 TTATTTCAAATAAGCTTGTATG--CTGAAAAACAATTGTTTTATGACAAAATGAAAGGT-AATAA
1 TTATTTCAAATAAGCTTGTATGAACT--AAAACAATTGTTTTATGACAAAACAAAAGATCAA-AA
* * * * ** * * * * *
14851374 TGATTTGAAATAGATAATTGTTCAAATGGCCAAAATTATTTAAACTAAGTCAG-TAA-AGTGATT
63 TGATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGATTTAGATAACA-T-ATT
* *
14851437 TATTTTTTGAA--TC-T-C-T-T-AATTTTCAAAATGTTATGAAAAGTAGTATTATT
126 TATTTTTTAAATCTCTTGCTTATAAATTTTC-AAATGTTAT--AAATTAGTATTATT
*** * * * *
14851487 TTATTTTGGATGAA-CTTTTGTGAACTAAAACAATTGTTTTATGACAAAACAAAA-ATTCACAAC
1 TTATTTCAAAT-AAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGA-TCAAAAT
* * * * * * *
14851550 GATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT--TGTTCGGTAAACAAATTT
64 GATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGAT-TTAGAT-AACATATTT
* * * * * * *
14851613 AGTTTTTCAAATATCCTGCTTATTAATCTTTCAAAAGTCAATAAATTAGAATTATT
127 A-TTTTTTAAATCTCTTGCTTATAAAT-TTTCAAATGT-TATAAATTAGTATTATT
* ** * * ** *
14851669 TTCTTTCGTATAAGTTTGTATGAACTAAAACAATTATTTTATGATTAAACAAAAGGT-AAGAATG
1 TTATTTCAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGATCAA-AATG
* * * * *
14851733 ATTTGAAATAAATAATTATTGTAATAATCTTAACTATTTGAACTGA--TCGATAAACACATTTAT
65 ATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGATTTAGAT-AACATATTTAT
* * * * *
14851796 TTTTTAAATCTTTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTGTT
129 TTTTTAAATCTCTTGCTTATAAATTTTC-AAATGTTA-TAAATTAGTATTATT
* * * * * * *
14851849 TT-TATCTAAATCAGCTTATATGATA-GAAAATAATTGTTTTATGACAAAAC-AAAGATCATAAC
1 TTATTTC-AAATAAGCTTGTATGA-ACTAAAACAATTGTTTTATGACAAAACAAAAGATCAAAAT
* * * * * * * * **
14851911 GATTTGAGATTA-ATATTTGTTCAAATAGT-TATAACTATTAGAATTGCTTT-GAAAAACAGCTT
64 GATTTGA-AATAGATAATTATTCTAATAGTCT-TAACTATTTGAACTGATTTAG-ATAACATATT
* * * * *
14851973 TAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATT
126 TATTTTTTAAATCTCTTGCTT-ATAAATTTTCAAATGTT-ATAAATTAGTATTATT
* * * * * *
14852029 TTATTTCAGATAAGTTTTTATTAACTGAAACAATTGTTTTATGACAAAACAAAATG-TCAAAATA
1 TTATTTCAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAA-GATCAAAATG
* * * * *
14852093 ATTTTAAATAGATAATTATT-TAAATTA-TCATATCTATTTGAAATTG-TTCAGCA-AACATATT
65 ATTTGAAATAGATAATTATTCT-AA-TAGTCTTAACTATTTG-AACTGATTTAG-ATAACATATT
14852154 TATTTTTTAAAATCTCTTGCTT-TAAATTTTCAAATGTTGATAAATTAGTATTATT
126 TATTTTTT-AAATCTCTTGCTTATAAATTTTCAAATGTT-ATAAATTAGTATTATT
* * * * * *
14852209 TTATTCCAAATAAACTTGTATGAACTAAAATAATTATTTTATAACTAAACAAAATGAT-AAAATG
1 TTATTTCAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAA-GATCAAAATG
* * *
14852273 ATTTGAAAGAGATAATTATTCTAATAGTCTTAACTATTTGAACTAATTTAGCTAACATATTTATT
65 ATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGATTTAGATAACATATTTA-T
14852338 TTTTTAAATCT
129 TTTTTAAATCT
14852349 TATTAATTTT
Statistics
Matches: 668, Mismatches: 141, Indels: 101
0.73 0.15 0.11
Matches are distributed among these distances:
174 2 0.00
175 88 0.13
176 12 0.02
177 3 0.00
178 3 0.00
179 54 0.08
180 287 0.43
181 86 0.13
182 119 0.18
183 8 0.01
184 6 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
TTATTTCAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGATCAAAATGA
TTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGATTTAGATAACATATTTATTT
TTTAAATCTCTTGCTTATAAATTTTCAAATGTTATAAATTAGTATTATT
Found at i:14852773 original size:18 final size:21
Alignment explanation
Indices: 14852735--14852824 Score: 71
Period size: 21 Copynumber: 4.3 Consensus size: 21
14852725 AGTAAACAAA
14852735 AATTATATACATATAATTATT
1 AATTATATACATATAATTATT
14852756 AATTA-ATA-ATAT-ATTATT
1 AATTATATACATATAATTATT
* * * *
14852774 AATTATTAAACAAATTTATTATA
1 AATTA-TATACATA-TAATTATT
* *
14852797 AAATATATATTATATAATTATT
1 AATTATATA-CATATAATTATT
14852819 -ATTATA
1 AATTATA
14852825 ATTTAATAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
18 11 0.21
19 4 0.08
20 5 0.09
21 12 0.23
22 10 0.19
23 11 0.21
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AATTATATACATATAATTATT
Found at i:14853296 original size:21 final size:21
Alignment explanation
Indices: 14853272--14853313 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14853262 ATTATTAGAT
* *
14853272 AAATTATAAATATAATTAATA
1 AAATTATAAATACAATAAATA
*
14853293 AAATTATTAATACAATAAATA
1 AAATTATAAATACAATAAATA
14853314 TAGTATATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATTATAAATACAATAAATA
Found at i:14853297 original size:38 final size:38
Alignment explanation
Indices: 14853222--14853295 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
14853212 AATAATTGAA
* *
14853222 TAATTATTAGATAAAATTATATTAAATTATTAAAAATT
1 TAATTATTAGATAAAATTATAATAAATTAATAAAAATT
14853260 TAATTATTAGAT-AAATTATAAATATAATTAATAAAA
1 TAATTATTAGATAAAATTAT-AATA-AATTAATAAAA
14853296 TTATTAATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 7 0.22
38 15 0.47
39 10 0.31
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (38 bp):
TAATTATTAGATAAAATTATAATAAATTAATAAAAATT
Found at i:14853460 original size:66 final size:62
Alignment explanation
Indices: 14853351--14853473 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 62
14853341 TATTTATTAT
*
14853351 TAAATATTTATAATTTAATTTATCTATTTTAATTAATTAATTA-TATTCAAATATAATATTTA
1 TAAATATTTATAATTAAATTTATCTATTTTAATTAATTAATTATTATT-AAATATAATATTTA
*
14853413 TAAATATTTATTATTAAATTATAAT-TATTTTAA-TAATTGTTATATTATTATTAAATATAAT
1 TAAATATTTATAATTAAATT-T-ATCTATTTTAATTAA---TTA-ATTATTATTAAATATAAT
14853474 TTAATTATGA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
62 21 0.40
63 9 0.17
64 2 0.04
65 3 0.06
66 13 0.25
67 4 0.08
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.54
Consensus pattern (62 bp):
TAAATATTTATAATTAAATTTATCTATTTTAATTAATTAATTATTATTAAATATAATATTTA
Found at i:14862366 original size:16 final size:17
Alignment explanation
Indices: 14862347--14862405 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 17
14862337 CTAAGTTATA
14862347 ATAA-TTAAATTTAATT
1 ATAATTTAAATTTAATT
*
14862363 ATAATTTAAA-TAAATT
1 ATAATTTAAATTTAATT
14862379 -TAAATTTAAATTTAAATT
1 AT-AATTTAAATTT-AATT
14862397 AATAATTTA
1 -ATAATTTA
14862406 TAACAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 1 0.03
16 17 0.49
17 6 0.17
18 4 0.11
19 6 0.17
20 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAATTTAAATTTAATT
Found at i:14862382 original size:6 final size:6
Alignment explanation
Indices: 14862351--14862396 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
14862341 GTTATAATAA
14862351 TTAAAT TT-AA- TTATAAT TTAAA- -TAAAT TTAAAT TTAAAT TTAAAT
1 TTAAAT TTAAAT TTA-AAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
14862396 T
1 T
14862397 AATAATTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
4 6 0.17
5 2 0.06
6 24 0.69
7 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAAAT
Found at i:14862390 original size:12 final size:11
Alignment explanation
Indices: 14862349--14862398 Score: 68
Period size: 10 Copynumber: 4.5 Consensus size: 11
14862339 AAGTTATAAT
14862349 AATTAAATTT-
1 AATTAAATTTA
14862359 AATTATAATTTA
1 AATTA-AATTTA
14862371 AA-TAAATTTA
1 AATTAAATTTA
14862381 AATTTAAATTTA
1 AA-TTAAATTTA
14862393 AATTAA
1 AATTAA
14862399 TAATTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
10 13 0.36
11 11 0.31
12 12 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:14862390 original size:22 final size:21
Alignment explanation
Indices: 14862352--14862395 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
14862342 TTATAATAAT
14862352 TAAATTTAATTATAATTTAAA
1 TAAATTTAATTATAATTTAAA
14862373 TAAATTTAAATT-TAAATTTAAA
1 TAAATTT-AATTAT-AATTTAAA
14862395 T
1 T
14862396 TAATAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAATTTAATTATAATTTAAA
Found at i:14862416 original size:34 final size:32
Alignment explanation
Indices: 14862351--14862424 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 32
14862341 GTTATAATAA
*
14862351 TTAAATTTAATTATAATTTAAATAAATTTAAAT
1 TTAAATTTAATTATAATTT-AATAAAATTAAAT
14862384 TTAAATTTAAATTAATAATTT-ATAACAATTAAAT
1 TTAAATTT-AATT-ATAATTTAATAA-AATTAAAT
*
14862418 TTGAATT
1 TTAAATT
14862425 ATGCCTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
33 12 0.33
34 17 0.47
35 7 0.19
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (32 bp):
TTAAATTTAATTATAATTTAATAAAATTAAAT
Found at i:14862764 original size:24 final size:23
Alignment explanation
Indices: 14862737--14862815 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 23
14862727 ATCTCTATTT
*
14862737 TTTATTAATATTAAATTTAATTAA
1 TTTATTAATA-TAAATTTAAATAA
* *
14862761 TTTAAGTAATATAATAATTAAATAA
1 TTT-ATTAATATAA-ATTTAAATAA
* *
14862786 -TTACTTAAAATAAATTTTAACTAA
1 TTTA-TTAATATAAA-TTTAAATAA
14862810 TTTATT
1 TTTATT
14862816 CTTTTAATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
23 2 0.05
24 24 0.56
25 17 0.40
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (23 bp):
TTTATTAATATAAATTTAAATAA
Found at i:14863798 original size:18 final size:18
Alignment explanation
Indices: 14863755--14863792 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14863745 ATGGTAATTA
*
14863755 AACTCAATTATATATAAT
1 AACTTAATTATATATAAT
14863773 AACTTAATTATATATAAT
1 AACTTAATTATATATAAT
14863791 AA
1 AA
14863793 TATAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
AACTTAATTATATATAAT
Found at i:14863803 original size:18 final size:18
Alignment explanation
Indices: 14863764--14863803 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14863754 AAACTCAATT
*
14863764 ATATATAATAACTTAATT
1 ATATATAATAACTTAATA
14863782 ATATATAATAA-TATAATA
1 ATATATAATAACT-TAATA
14863800 ATAT
1 ATAT
14863804 TATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 1 0.05
18 19 0.95
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATATAATAACTTAATA
Found at i:14863816 original size:23 final size:25
Alignment explanation
Indices: 14863761--14863816 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 25
14863751 ATTAAACTCA
14863761 ATTATATATAATAACTTAATTATATAT
1 ATTA-ATATAATAAC-TAATTATATAT
* *
14863788 AATAATATAATAA-T-ATTATATTT
1 ATTAATATAATAACTAATTATATAT
14863811 ATTAAT
1 ATTAAT
14863817 TTATTAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 13 0.50
24 1 0.04
26 9 0.35
27 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTAATATAATAACTAATTATATAT
Found at i:14864144 original size:20 final size:20
Alignment explanation
Indices: 14864121--14864160 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14864111 TTAATGAATT
*
14864121 AATATTATT-TAATACTATAA
1 AATATGATTATAATA-TATAA
14864141 AATATGATTATAATATATAA
1 AATATGATTATAATATATAA
14864161 TAAATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (20 bp):
AATATGATTATAATATATAA
Found at i:14864169 original size:9 final size:10
Alignment explanation
Indices: 14864130--14864188 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
14864120 TAATATTATT
14864130 TAATACTATAA
1 TAATA-TATAA
*
14864141 -AATATGATTA
1 TAATAT-ATAA
14864151 TAATATATAA
1 TAATATATAA
14864161 TAA-ATATAA
1 TAATATATAA
*
14864170 TATTATTATAA
1 TAATA-TATAA
14864181 TTAATATA
1 -TAATATA
14864189 GTCAAATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
9 9 0.23
10 14 0.36
11 12 0.31
12 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (10 bp):
TAATATATAA
Found at i:14864265 original size:14 final size:15
Alignment explanation
Indices: 14864242--14864286 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
14864232 ATGAATTTAC
14864242 AATT-ATAATATTAT
1 AATTCATAATATTAT
14864256 AA-TCATAATATTAAT
1 AATTCATAATATT-AT
*
14864271 AATTCA-AATATAAT
1 AATTCATAATATTAT
14864285 AA
1 AA
14864287 AATGAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 1 0.04
14 14 0.52
15 9 0.33
16 3 0.11
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTCATAATATTAT
Found at i:14864324 original size:16 final size:16
Alignment explanation
Indices: 14864300--14864343 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
14864290 GAATTAAATA
14864300 AATTATTATAAATTAT
1 AATTATTATAAATTAT
* *
14864316 AATTGTTATTAATTAT
1 AATTATTATAAATTAT
**
14864332 AACAATTATAAA
1 AATTATTATAAA
14864344 CAAATTAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
AATTATTATAAATTAT
Found at i:14864469 original size:20 final size:19
Alignment explanation
Indices: 14864444--14864506 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
14864434 TATATATAAA
14864444 TTATTATATAATTAATTAAC
1 TTATTATATAATTAATT-AC
* *
14864464 TTATTAAAT-ATTATATTTC
1 TTATTATATAATTA-ATTAC
*
14864483 -TATT-TATAATTAAATAC
1 TTATTATATAATTAATTAC
14864500 TTATTAT
1 TTATTAT
14864507 TATGTACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 5 0.15
18 12 0.35
19 6 0.18
20 11 0.32
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
TTATTATATAATTAATTAC
Found at i:14864571 original size:18 final size:18
Alignment explanation
Indices: 14864550--14864595 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14864540 ACTTATTTGA
*
14864550 ATATATAATGAATATTAT
1 ATATATAATCAATATTAT
* *
14864568 ATATATATTCATTATTAT
1 ATATATAATCAATATTAT
14864586 ATTATATAAT
1 A-TATATAAT
14864596 TAACAATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATATATAATCAATATTAT
Found at i:14864893 original size:12 final size:12
Alignment explanation
Indices: 14864843--14864906 Score: 55
Period size: 13 Copynumber: 5.4 Consensus size: 12
14864833 GCAATTAATG
14864843 TTATA-ATATTA
1 TTATATATATTA
*
14864854 TTA-ATAAACTATA
1 TTATATATA-T-TA
*
14864867 TTATGTATA--A
1 TTATATATATTA
14864877 TTATATATATTA
1 TTATATATATTA
14864889 TTATATATATTTA
1 TTATATATA-TTA
14864902 TTATA
1 TTATA
14864907 ATTGTTAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 10 0.24
11 5 0.12
12 11 0.26
13 13 0.31
14 3 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (12 bp):
TTATATATATTA
Found at i:14864963 original size:13 final size:13
Alignment explanation
Indices: 14864947--14865030 Score: 50
Period size: 13 Copynumber: 6.4 Consensus size: 13
14864937 TATCTAATTA
14864947 AATTACTATATAT
1 AATTACTATATAT
*
14864960 AATTATTATATAT
1 AATTACTATATAT
* *
14864973 ATTTATATATTATAT
1 AATTA-CTA-TATAT
14864988 ATATTATCTA-AT-T
1 A-ATTA-CTATATAT
14865001 AAATTACTATA-AT
1 -AATTACTATATAT
* *
14865014 AAATAATA-ATAT
1 AATTACTATATAT
14865026 AATTA
1 AATTA
14865031 TATTAGGTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
11 1 0.02
12 15 0.27
13 23 0.41
14 5 0.09
15 6 0.11
16 6 0.11
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTACTATATAT
Found at i:14865049 original size:55 final size:55
Alignment explanation
Indices: 14864924--14865033 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
14864914 ATAATTAACG
* * * *
14864924 ATATTGTATATATTATCTAATTAAATTACTATATATAATTATTATATATATTTAT
1 ATATTATATATATTATCTAATTAAATTACTATATATAAATAATATATATAATTAT
14864979 ATATTATATATATTATCTAATTAAATTACTATA-ATAAATAATA-ATATAATTAT
1 ATATTATATATATTATCTAATTAAATTACTATATATAAATAATATATATAATTAT
14865032 AT
1 AT
14865034 TAGGTTAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 11 0.22
54 8 0.16
55 32 0.63
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (55 bp):
ATATTATATATATTATCTAATTAAATTACTATATATAAATAATATATATAATTAT
Found at i:14865145 original size:21 final size:22
Alignment explanation
Indices: 14865120--14865160 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14865110 TATTATTTCA
14865120 TAATTTT-TGTTATAT-AATACT
1 TAATTTTAT-TTATATCAATACT
14865141 TAATTTTATTTATATCAATA
1 TAATTTTATTTATATCAATA
14865161 AAATCTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (22 bp):
TAATTTTATTTATATCAATACT
Found at i:14866115 original size:20 final size:20
Alignment explanation
Indices: 14866074--14866115 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14866064 TTATTTAATA
* *
14866074 ATATAATATAATATTATTAT
1 ATATAATATAATATAATCAT
14866094 ATATAAT-TAAATATAATCAT
1 ATATAATAT-AATATAATCAT
14866114 AT
1 AT
14866116 GAATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATAATATAATATAATCAT
Found at i:14866289 original size:19 final size:19
Alignment explanation
Indices: 14866235--14866289 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
14866225 ATCTATTTCA
*
14866235 TATAATTAT-TAATTA-TAG
1 TATAATTATATAA-TACTAC
*
14866253 TATTATT-TATAGATACTAC
1 TATAATTATATA-ATACTAC
14866272 TATAATTATATAATACTA
1 TATAATTATATAATACTA
14866290 AATAATTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
17 1 0.03
18 10 0.33
19 15 0.50
20 4 0.13
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (19 bp):
TATAATTATATAATACTAC
Found at i:14867666 original size:177 final size:181
Alignment explanation
Indices: 14867239--14867736 Score: 544
Period size: 177 Copynumber: 2.8 Consensus size: 181
14867229 AACAAGTTTG
* * * * *
14867239 AATAATTATGGCTATTTGAACAATTATT-TATTTAAAATAATTATGACCATTTGTTTTGTCATAA
1 AATAATTATGACTATTTGAACAATT-TTCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
* * * * * *
14867303 AACAATTGTTTTAGTTCATAAAAGTTTATCCAAAATAAAATAATACTACTTTAGTAATATTTCAA
65 AATAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAGTAATATTTCAA
*
14867368 AAATTAATAAGTAGCTAATTTAAAAGAATAAATCAATTTACCCAATCAGTTCA
130 AAATTAATAAGTAGC-AATTTAAAAGAATAAATCAATTTACCCAATCAATTCA
* * * * * * *
14867421 AATAATTAT-AGCCATTTAAACAACTATCTATTTCAAATTGTTATTACATTTTGTTTTGTCATAA
1 AATAATTATGA-CTATTTGAACAATTTTCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
*** ** * * *
14867485 AATAATTGTTTTTCAACATACAAGCTTATTTGAAATAAAATAATACCAATTTATTAATATTTTAA
65 AATAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAGTAATATTTCAA
* * * ***
14867550 GAATTGATAAG-A-C-ATTTAAAA-AATAAATCAGTTTATTGAA-CTAATTCA
130 AAATTAATAAGTAGCAATTTAAAAGAATAAATCAATTTACCCAATC-AATTCA
* * * *
14867598 AATAGTTATGACTATTTGAACAATTTTCTATTTCAAATTATTACAACCTTTTGTTCTATCATAAA
1 AATAATTATGACTATTTGAACAATTTTCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAA
*
14867663 ATAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAGCAATA-TTCTAA
66 ATAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAGTAATATTTC-AA
*
14867727 AAATGAATAA
130 AAATTAATAA
14867737 CTAAGAGATT
Statistics
Matches: 256, Mismatches: 55, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
176 3 0.01
177 131 0.51
178 9 0.04
180 1 0.00
181 2 0.01
182 110 0.43
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (181 bp):
AATAATTATGACTATTTGAACAATTTTCTATTTCAAATTATTATAACCTTTTGTTTTGTCATAAA
ATAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAGTAATATTTCAAA
AATTAATAAGTAGCAATTTAAAAGAATAAATCAATTTACCCAATCAATTCA
Found at i:14868152 original size:6 final size:6
Alignment explanation
Indices: 14868141--14868179 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14868131 AATAAAAAGC
* *
14868141 TTAATA TTAATA TCAATA TTAA-A TTAGTA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
14868180 ACAATGTTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (6 bp):
TTAATA
Found at i:14868175 original size:17 final size:17
Alignment explanation
Indices: 14868141--14868180 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14868131 AATAAAAAGC
14868141 TTAATATTAATATCAATA
1 TTAA-ATTAATATCAATA
* *
14868159 TTAAATTAGTATTAATA
1 TTAAATTAATATCAATA
14868176 TTAAA
1 TTAAA
14868181 CAATGTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTAATATCAATA
Found at i:14869129 original size:38 final size:37
Alignment explanation
Indices: 14869065--14869139 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
14869055 TAATCAAATT
*
14869065 ATATATAATAATATTAAAAAATTAATTAAAAATTATTA
1 ATATATAATAATATTAAAAAAGTAATT-AAAATTATTA
* *
14869103 ATATATAATAATTATT-AATAAGTAATTTAAATTATTA
1 ATATATAATAA-TATTAAAAAAGTAATTAAAATTATTA
14869140 CTAAATAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 9 0.27
38 20 0.61
39 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (37 bp):
ATATATAATAATATTAAAAAAGTAATTAAAATTATTA
Found at i:14869703 original size:180 final size:177
Alignment explanation
Indices: 14869309--14870575 Score: 912
Period size: 180 Copynumber: 7.1 Consensus size: 177
14869299 AATAAGATAT
* * * * * *
14869309 TATTTTAAATCGTTATCACCTTTTGTTTGGTCATATAACAATTGTTT-TTTATCATACATGATTA
1 TATTTCAAATCGTTATGACC-TTTGTTT-GTCATAAAACAATTGTTTCTAT-TCATACAAGCTTA
* *
14869373 TTCAAAATAAAATAATAATAATTTATTAATCTTTCAAAAA-T--TAATAAGAGATTTAAAAAATG
63 TTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGATTTAAAAAAT-
* * * * * *
14869435 AATCTGTTTACCGAACCAGTTCAAATAATTATGACTATTTGAACAATT-TAC
127 AATTTGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTAT-C
* * * * *
14869486 -ACTTCAAATCATTATAACATTTTGTTATGTCATAAAACAATTCTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCGTTATGAC-CTTTGTT-TGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
* * * *
14869550 TCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATA
64 TCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-TAAGAGATTTAAAAAAT-
* * * *
14869615 AATTTGTTTACCGAACTAATTCAAATAGTTAAGGCTATATGAATAATTATC
127 AATTTGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTATC
* * * *
14869666 TATTTTAAATTGTTATGACCTTTGTCTTGTCATAAAACAA--GTTTCTCAATTCATACTAGGTTA
1 TATTTCAAATCGTTATGACCTTTGT-TTGTCATAAAACAATTGTTTCT--ATTCATACAAGCTTA
* * * *
14869729 TTCGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAGAAA
63 TTCAAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAA-TAAGAGATTTAAAAAA
* * * * * * *
14869793 TAATTCTGTTTACCTAACCAGTTCAAAAAATT-ATACTATTTGAACAATTATA
126 TAATT-TGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTATC
* * * * * * * * * *
14869845 TTTTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTAT
1 TATTTCAAATCGTTATGAC-CTTTG-TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
** * * * * *
14869910 TCGGAATAAAGTAATACTAATCTATTAATATTTCAAAAA-T--TAATAAGTGATTTAGACAATAA
64 TCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGATTTAAAAAAT-A
* * * * * * * *
14869972 ATCTATGTATCAAACTAATTCAAATAGTTATGACTATTTGAGTAATTATT
128 ATTTGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTATC
* * * **
14870022 TATTTCAAATCATTATGACTTTTTGTATCGTTGTAAAACAATTGTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCGTTATGAC-CTTTGT-TTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
*** * ** * * * * *
14870087 TGGCATTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAGTAAAAAAATTTTAAAAAT
64 TCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-T-AAGAGATTTAAAAAAT
* * * *
14870152 -A--TGTTTACCACACTAGA-TCAAATAATCATGACAATTTGAATAATTATC
127 AATTTGTTTACCAAACTA-ATTCAAATAATTAAGACTATTTGAATAATTATC
* * * *
14870200 TATTTCAAAT-GTTATGACCTTTTGATTTATCATAAAAGAATTATTTC-AGTTCATATAAGCTTA
1 TATTTCAAATCGTTATGACC-TTTG-TTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTA
* * *
14870263 TTCAATATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAATAAAGAGATTTAAAAAAT
63 TTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAT-AAGAGATTTAAAAAAT
* * * * * *
14870328 GACTTTGTTTACTAAACAAATTTAAATAATTAGGACTGTTTGAATAATTATC
127 -AATTTGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTATC
* * * * * * * *
14870380 TATTTGAAATAGCTATAACCTTTTGTTTTGTAATAAAAGAATTTTTTCTGTTCAT-CTAAGCTTA
1 TATTTCAAATCGTTATGACC-TTTG-TTTGTCATAAAACAATTGTTTCTATTCATAC-AAGCTTA
* * * *
14870444 TTTC-AAGTAAAATAATACAAATTTGTTAATA-TT-AAGACAATTAATAAGTAAAAGATTT-AAA
63 -TTCAAAATAAAATAATACTAATTTATTAATATTTCAA-A-AATTAATAA-TAAGAGATTTAAAA
*** * * * * ** *
14870505 AATAAATCCATTTACCAAGC-AAGTTCTAATCATTATGACTATTTGAGCAATTATT
124 AAT-AATTTGTTTACCAAACTAA-TTCAAATAATTAAGACTATTTGAATAATTATC
14870560 TATTTCAACAT-GTTAT
1 TATTTCAA-ATCGTTAT
14870576 AAGTTTTTGT
Statistics
Matches: 860, Mismatches: 185, Indels: 87
0.76 0.16 0.08
Matches are distributed among these distances:
176 130 0.15
177 183 0.21
178 53 0.06
179 45 0.05
180 326 0.38
181 104 0.12
182 19 0.02
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
TATTTCAAATCGTTATGACCTTTGTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTC
AAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGATTTAAAAAATAATT
TGTTTACCAAACTAATTCAAATAATTAAGACTATTTGAATAATTATC
Found at i:14871002 original size:15 final size:15
Alignment explanation
Indices: 14870958--14871003 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
14870948 TTTGTAATAA
14870958 AATATAATATAATAATT
1 AATATAAT-TAAT-ATT
*
14870975 ATTAT-ATTAATATT
1 AATATAATTAATATT
14870989 AATATAATTAATATT
1 AATATAATTAATATT
14871004 CAAAATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 7 0.27
15 13 0.50
16 2 0.08
17 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATAATTAATATT
Found at i:14871157 original size:24 final size:25
Alignment explanation
Indices: 14871050--14871163 Score: 64
Period size: 24 Copynumber: 4.6 Consensus size: 25
14871040 ATTAATAAGT
*
14871050 TATTAATATAATATTT-TATTAATTA
1 TATTAATTTAATATTTATATT-ATTA
* *
14871075 -GTT-ATTTAAATGTTTTATATTATTA
1 TATTAATTT-AAT-ATTTATATTATTA
* *
14871100 -A-T-ATTTACTATCCTATTATTATTA
1 TATTAATTTAATAT-TTA-TATTATTA
14871124 TATTAATTTAA-ATTTATATTATTA
1 TATTAATTTAATATTTATATTATTA
*
14871148 TAATT-TTTTAATATTT
1 T-ATTAATTTAATATTT
14871164 TAATTAATTA
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
22 1 0.01
23 7 0.10
24 32 0.46
25 17 0.25
26 7 0.10
27 5 0.07
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (25 bp):
TATTAATTTAATATTTATATTATTA
Found at i:14871546 original size:177 final size:177
Alignment explanation
Indices: 14871244--14872063 Score: 548
Period size: 177 Copynumber: 4.6 Consensus size: 177
14871234 TAATCAATTT
* * ** * **
14871244 AAATAATTATGACTACTTGAACAATTACATATTTCAAATCATTATTATTTTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATAACATTTTGTTTTGTCATAA
* ** * * * * *
14871309 AGCAAATGGTTTTGTTCATATAAGTTTATTAAGAATAAAGTAATACTAATCTATTAATATTTCAA
66 AAC-AATTATTTTATTCATATAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTT-AA
* **
14871374 A-AATTAAAAAGT-GATTTAAAAAATAAATCTATTTATCAAACTTGTTC
129 ATAATTAATAAGTAGATTTAAAAAATAAATCTATTTATCAAACAAGTTC
* * * *
14871421 AAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCTTTATGACATTTTGTTTTGTTATAA
1 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATAACATTTTGTTTTGTCATAA
* * * **
14871486 AACAATTATTTCTATTCATACAAGCTTATTTGGATTAAAATAATACTAATTTATTAATATTTTGA
66 AACAATTATTT-TATTCATATAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTAAA
* * * * * * *
14871551 CAATTAATAAGTTAAAAATTTTAGAAATAAATATGTTTACCTAAAC-AG-TC
130 TAATTAATAAG-T--AGATTTAAAAAATAAATCTATTTATC-AAACAAGTTC
* * * *
14871601 --AT-G----G-CTATTTGAATAGTTATCTATTTCAAATCATTATGACATTTTAG-TTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATAACATTTT-GTTTTGTCATA
* * * *
14871657 AAA-AACTCATTTCAGTTCATATAATG-TTA-TTGGAAATAAAATAATAC-CATGTTATTAATAT
65 AAACAA-TTATTTTA-TTCATATAA-GCTTATTTAG-AATAAAATAATACTAAT-TTATTAATAT
* * * *
14871718 TCTGAAATTAA-TAATTAAG-AGATTTAAAAAATAAATTTATTTACCGAACAAGTTT
125 T-T-AAA-TAATTAA-TAAGTAGATTTAAAAAATAAATCTATTTATCAAACAAGTTC
* * * * * ** *** * * *
14871773 AAATAATTATGGCCATTTGAACAATTACTGATTTGGAATCGCGATAACCTTTTGGTTTGTCATAT
1 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATAACATTTTGTTTTGTCATAA
** * * * * *
14871838 AATGATTTTATTTGTTCATATAAGCTTACTTTCGAACAAAATAATACAAATTTATTAATA-TTAA
66 AACAATTAT-TTTATTCATATAAGCTTA-TTTAGAATAAAATAATACTAATTTATTAATATTTAA
* *
14871902 GACAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACAAATTC
129 -ATAATTAATAAGT---AGATTTAAAAAATAAATCTATTTATCAAACAAGTTC
* * * * *
14871955 AAATCGTTATGACTATCTGAATAATTATTTATTTCAAATTC-TTATAACTTTTTTGTTTTATCAT
1 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAA-TCATTATAAC-ATTTTGTTTTGTCAT
* * ** * *
14872019 AAAACAATTGTTTTCATCCATACGAGCTTATTTAGATTAATATAA
64 AAAACAATTATTTT-ATTCATATAAGCTTATTTAGAATAAAATAA
14872064 ATTCATAATT
Statistics
Matches: 492, Mismatches: 108, Indels: 81
0.72 0.16 0.12
Matches are distributed among these distances:
170 3 0.01
171 32 0.07
172 87 0.18
173 4 0.01
174 6 0.01
175 6 0.01
176 7 0.01
177 109 0.22
178 11 0.02
179 8 0.02
180 56 0.11
181 44 0.09
182 87 0.18
183 32 0.07
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (177 bp):
AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATAACATTTTGTTTTGTCATAA
AACAATTATTTTATTCATATAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTAAAT
AATTAATAAGTAGATTTAAAAAATAAATCTATTTATCAAACAAGTTC
Found at i:14871699 original size:172 final size:171
Alignment explanation
Indices: 14871445--14871762 Score: 398
Period size: 172 Copynumber: 1.9 Consensus size: 171
14871435 ATTTGAGCAA
* * * *
14871445 TTATTTATTTCAAATCTTTATGACATTTTGTTTTGTTATAAAACAATTATTTCTATTCATACAAG
1 TTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATCATTTCTATTCATACAAG
* * *
14871510 CTTATTTGGATTAAAATAATACTAAT-TTATTAATATTTTGACAATTAATAAGTTAA-AAATTTT
66 CTTATTTGGAATAAAATAATAC-AATGTTATTAATATTCTGA-AATTAATAA-TTAAGAAATTTA
* *
14871573 AGAAATAAATATGTTTACCTAAACAGTCATGGCTATTTGAATAG
128 AAAAATAAATATATTTACCTAAACAGTCATGGCTATTTGAATAG
*
14871617 TTATCTATTTCAAATCATTATGACATTTTAG-TTTGTCATAAAA-AACTCATTTC-AGTTCATAT
1 TTATCTATTTCAAATCATTATGACATTTT-GTTTTGTCATAAAACAA-TCATTTCTA-TTCATAC
* *
14871679 AATG-TTA-TTGGAAATAAAATAATACCATGTTATTAATATTCTGAAATTAATAATTAAGAGATT
63 AA-GCTTATTTGG-AATAAAATAATACAATGTTATTAATATTCTGAAATTAATAATTAAGAAATT
*
14871742 TAAAAAATAAATTTATTTACC
126 TAAAAAATAAATATATTTACC
14871763 GAACAAGTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
170 4 0.03
171 39 0.31
172 81 0.64
173 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (171 bp):
TTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATCATTTCTATTCATACAAG
CTTATTTGGAATAAAATAATACAATGTTATTAATATTCTGAAATTAATAATTAAGAAATTTAAAA
AATAAATATATTTACCTAAACAGTCATGGCTATTTGAATAG
Found at i:14872294 original size:22 final size:21
Alignment explanation
Indices: 14872269--14872310 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14872259 TTATTATTTA
14872269 ATATTA-TATAAATATTATAATT
1 ATATTATTA-AAAT-TTATAATT
14872291 ATATTATTAAAATTTATAAT
1 ATATTATTAAAATTTATAAT
14872311 AATTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 10 0.53
23 2 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATTATTAAAATTTATAATT
Found at i:14872317 original size:16 final size:16
Alignment explanation
Indices: 14872296--14872347 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 16
14872286 TAATTATATT
14872296 ATTAAAATTTATAATA
1 ATTAAAATTTATAATA
14872312 ATTAAATATTTATTAATTTA
1 ATTAAA-ATTTA-TAA--TA
* *
14872332 ATAAAAACTTATAATA
1 ATTAAAATTTATAATA
14872348 TAATTAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
16 8 0.27
17 5 0.17
18 6 0.20
19 4 0.13
20 7 0.23
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAAAATTTATAATA
Found at i:14872811 original size:14 final size:14
Alignment explanation
Indices: 14872779--14872818 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14872769 TAATTATGAT
14872779 TTATAATAATTATAA
1 TTATAAT-ATTATAA
14872794 -TATAATATTATAA
1 TTATAATATTATAA
*
14872807 TTATATTATTAT
1 TTATAATATTAT
14872819 TTATAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAATATTATAA
Found at i:14872918 original size:14 final size:15
Alignment explanation
Indices: 14872891--14872920 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14872881 TAATAATATA
14872891 TTGTTTATTATTAAT
1 TTGTTTATTATTAAT
14872906 TTGTTTA-TATTAAT
1 TTGTTTATTATTAAT
14872920 T
1 T
14872921 ATTACTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TTGTTTATTATTAAT
Found at i:14874103 original size:20 final size:20
Alignment explanation
Indices: 14874071--14874112 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14874061 TAGAATTTGA
14874071 AATAAATTATAATATA-AAAT
1 AATAAATTATAAT-TAGAAAT
14874091 AATAATATT-TAATTAGAAAT
1 AATAA-ATTATAATTAGAAAT
14874111 AA
1 AA
14874113 ACCTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 2 0.10
20 15 0.75
21 3 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AATAAATTATAATTAGAAAT
Found at i:14874249 original size:25 final size:23
Alignment explanation
Indices: 14874212--14874257 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
14874202 ACTATATTAA
14874212 TTTATAAATAATAAATTATAATTGT
1 TTTATAAATAAT--ATTATAATTGT
14874237 TTTATAACA-AATATTATAATT
1 TTTATAA-ATAATATTATAATT
14874258 ATAATATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 9 0.45
25 10 0.50
26 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTATAAATAATATTATAATTGT
Found at i:14874300 original size:25 final size:27
Alignment explanation
Indices: 14874253--14874306 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
14874243 ACAAATATTA
14874253 TAATTATAATATAATTAATTTATTAAT
1 TAATTATAATATAATTAATTTATTAAT
14874280 TAATTA-AATATAA-T-ATCTTATTAAT
1 TAATTATAATATAATTAAT-TTATTAAT
14874305 TA
1 TA
14874307 TTTTTTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 2 0.08
25 11 0.42
26 7 0.27
27 6 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (27 bp):
TAATTATAATATAATTAATTTATTAAT
Found at i:14875517 original size:180 final size:177
Alignment explanation
Indices: 14874615--14875660 Score: 985
Period size: 181 Copynumber: 5.9 Consensus size: 177
14874605 AATACTTATT
* * * * * * * *
14874615 ATTTGAAATAAATAATTATTCTAATAGTCTTAATTATTTGAACTAGTTCGGCAAACACATTTACT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTA-T
* * * * *
14874680 TTTTTAAA-TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATT-GAATAAG
65 TTTTTAAATTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTT-ATTTCAAATAAG
** * * * *
14874742 CCAGTATGAAAAGAAACACTTTTTTATGACAAAAC-AAAGATCATAAAG
129 CTTGTATGAATAGAAACAATTGTTTATGACAAAACAAAAGATCATAACG
* * *
14874790 ATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTAT-TTCGGTAAATAGATTT-T
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTCGGTAAACAGATTTAT
* * * * *
14874853 GTTTTTAAA-TCT-CTTATTAA-TTATAAAAAATTAATAGATCAGTATTA-TTATATTCTAAATA
65 -TTTTTAAATTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTAT-TTC-AAATA
* * * *
14874914 A--TTGTACATGAATAGAAATAATTGTTTTACT-ACGAAACAAAATG-TCATTATG
127 AGCTTGT--ATGAATAGAAACAATTG-TTTA-TGACAAAACAAAA-GATCATAACG
* * ** * * *
14874966 ATTTGAACTAGATAATAGTTCAAATAAACATGACGATTTGAACTTGTTCGGTAAACAAATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATT
* * *
14875031 TTTTAAATCTCAAACTTATTAATTTTTAGAATACTAATAAATTAGTGTTATTTTATTTCAAATAA
66 TTTTAAAT-TC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTA-TTTATTTCAAATAA
** * * *
14875096 AATTGTATGAATAGAAATAATTGTTTTATGACAAAACAAAATATCATAACA
128 GCTTGTATGAATAGAAACAATTG-TTTATGACAAAACAAAAGATCATAACG
* * * *
14875147 ATTTGAAATAAATAATTATTCTAATAGTCATAACTATTTGAACTTGCTCGGTAAACAGATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATT
* * * *
14875212 TTTAAAATTTTCTACTTATTAATTTTTGGAATTTTAATAAATTAGTATTATGTTATTTCAAAAAA
66 TTTTAAA--TTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT-TTATTTCAAATAA
* * * *
14875277 GCTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAACA
128 GCTTGTATGAATAGAAACAATT-GTTTATGACAAAACAAAAGATCATAACG
* * * * * * *
14875328 ATTTGAAATAGATCATTCTTCAAATAGTCATAACTATTTGAAATTGTTCAGAAAATATATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATT
* * *
14875393 TTTTAAAGTTTTACTTATTAATTTTTAGAATATTAATAAATTTA-AATTACTTTATTTGAAATAA
66 TTTTAAA-TTCTACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTA-TTTATTTCAAATAA
* * * *
14875457 GCTTGCATGAACAGAACCAATTGTTTATTGACAAAACAAAAGATCATAATG
128 GCTTGTATGAATAGAAACAATTGTTTA-TGACAAAACAAAAGATCATAACG
* * * *
14875508 TTTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTTATTTGGTAAAC--ATTT-TT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATT
* * * *
14875570 TTTTAATTCTCTTACTCATTAATTTTTAGAATATTAATGAATTAGTATTATCTTACTTCAAATAA
66 TTTTAAAT-TC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT-TTATTTCAAATAA
* * *
14875635 GCTTATATGAATTGAAACAAGTGTTT
128 GCTTGTATGAATAGAAACAATTGTTT
14875661 TATTATAAAA
Statistics
Matches: 710, Mismatches: 126, Indels: 67
0.79 0.14 0.07
Matches are distributed among these distances:
171 1 0.00
172 6 0.01
173 21 0.03
174 36 0.05
175 62 0.09
176 69 0.10
177 15 0.02
178 68 0.10
179 5 0.01
180 137 0.19
181 275 0.39
182 6 0.01
183 9 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (177 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATT
TTTTAAATTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTATTTCAAATAAGCT
TGTATGAATAGAAACAATTGTTTATGACAAAACAAAAGATCATAACG
Found at i:14876347 original size:7 final size:7
Alignment explanation
Indices: 14876312--14876439 Score: 56
Period size: 7 Copynumber: 17.9 Consensus size: 7
14876302 TCATTTGAAA
14876312 TAATTAT
1 TAATTAT
14876319 TAA-TAT
1 TAATTAT
14876325 TAA-TAT
1 TAATTAT
14876331 TAA-TAT
1 TAATTAT
14876337 T-ATTAAT
1 TAATT-AT
14876344 T-ATTAT
1 TAATTAT
14876350 TAATTATT
1 TAATTA-T
* *
14876358 TAGTGTTAA
1 TA--ATTAT
14876367 TAATTAT
1 TAATTAT
14876374 TAATATACAT
1 TAAT-T--AT
*
14876384 TATATT-G
1 TA-ATTAT
14876391 TATATTA-
1 TA-ATTAT
*
14876398 TAATTAAA
1 TAATT-AT
14876406 TAATT-T
1 TAATTAT
*
14876412 TATATTAG
1 TA-ATTAT
14876420 TAATTAT
1 TAATTAT
14876427 TAATTAT
1 TAATTAT
14876434 TAATTA
1 TAATTA
14876440 AGACTATAAC
Statistics
Matches: 98, Mismatches: 8, Indels: 30
0.72 0.06 0.22
Matches are distributed among these distances:
5 1 0.01
6 25 0.26
7 49 0.50
8 11 0.11
9 2 0.02
10 8 0.08
11 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (7 bp):
TAATTAT
Found at i:14876349 original size:10 final size:10
Alignment explanation
Indices: 14876312--14876357 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
14876302 TCATTTGAAA
*
14876312 TAATTATTAA
1 TAATTATTAT
*
14876322 T-ATTAATAT
1 TAATTATTAT
14876331 TAA-TATTAT
1 TAATTATTAT
14876340 TAATTATTAT
1 TAATTATTAT
14876350 TAATTATT
1 TAATTATT
14876358 TAGTGTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TAATTATTAT
Found at i:14876376 original size:10 final size:10
Alignment explanation
Indices: 14876310--14876378 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 10
14876300 TATCATTTGA
14876310 AATAATTATT
1 AATAATTATT
*
14876320 AATATTAATATT
1 AATA--ATTATT
14876332 AAT-ATTATT
1 AATAATTATT
*
14876341 AATTATTATT
1 AATAATTATT
*
14876351 AATTATTTAGTGTT
1 AA-TAATTA---TT
14876365 AATAATTATT
1 AATAATTATT
14876375 AATA
1 AATA
14876379 TACATTATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
9 8 0.17
10 18 0.38
11 4 0.09
12 8 0.17
13 5 0.11
14 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (10 bp):
AATAATTATT
Found at i:14876547 original size:17 final size:17
Alignment explanation
Indices: 14876525--14876578 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
14876515 AAGATAAATT
14876525 TAATATTATAATTTAAA
1 TAATATTATAATTTAAA
14876542 TAATA-T-TAA-TT-AA
1 TAATATTATAATTTAAA
14876555 TAATATTGAT-ATATTAAA
1 TAATATT-ATAAT-TTAAA
14876573 TAATAT
1 TAATAT
14876579 ATGATTAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 7 0.23
14 3 0.10
15 4 0.13
16 2 0.06
17 7 0.23
18 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
TAATATTATAATTTAAA
Found at i:14876775 original size:21 final size:20
Alignment explanation
Indices: 14876736--14876783 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
14876726 TTATTAAAAT
14876736 TTAATTATATTAATAAATTGA
1 TTAATTATATTAATAAATT-A
*
14876757 TTAATTA-ATTTATACAATTA
1 TTAATTATATTAATA-AATTA
*
14876777 ATAATTA
1 TTAATTA
14876784 GTTATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
TTAATTATATTAATAAATTA
Found at i:14880300 original size:43 final size:43
Alignment explanation
Indices: 14880252--14880343 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 43
14880242 AGAAAATAGA
** *
14880252 TAATTATTTATCTATT-AATTTACTATTTAA-ATTAAATATTATT
1 TAATTATTTAAATATTCAATTTA-T-TTTAATATTAAATATTAAT
* *
14880295 TAATTATTTAAATATTCTATTTATTTTAATATTTAATATTAAT
1 TAATTATTTAAATATTCAATTTATTTTAATATTAAATATTAAT
14880338 TAATTA
1 TAATTA
14880344 AATTGATTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 5 0.12
43 32 0.76
44 5 0.12
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (43 bp):
TAATTATTTAAATATTCAATTTATTTTAATATTAAATATTAAT
Found at i:14880369 original size:22 final size:21
Alignment explanation
Indices: 14880330--14880406 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 21
14880320 TTAATATTTA
*
14880330 ATATTAATTAAT-TAAATTGATT
1 ATATTAATTAATAT-AATT-ACT
14880352 ATATTAATTAATATAATTACT
1 ATATTAATTAATATAATTACT
*
14880373 A-ATTAAGTTTAATATAATATAAT
1 ATATTAA--TTAATATAAT-TACT
14880396 A-ATT-ATTAATA
1 ATATTAATTAATA
14880407 AGATATAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
20 11 0.22
21 3 0.06
22 27 0.55
23 8 0.16
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (21 bp):
ATATTAATTAATATAATTACT
Found at i:14880404 original size:20 final size:21
Alignment explanation
Indices: 14880354--14880417 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 21
14880344 AATTGATTAT
*
14880354 ATTAATTAATATAAT-TACTA
1 ATTAATTAATATAATATAATA
14880374 ATTAAGTTTAATATAATATAATA
1 ATTAA--TTAATATAATATAATA
14880397 ATT-ATTAATA-AGATATAATA
1 ATTAATTAATATA-ATATAATA
14880417 A
1 A
14880418 AGGATAAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 20 0.51
22 11 0.28
23 7 0.18
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (21 bp):
ATTAATTAATATAATATAATA
Found at i:14880561 original size:24 final size:24
Alignment explanation
Indices: 14880529--14880581 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
14880519 AATGTTTAAT
* * *
14880529 AATAATTAATTATTATAATTATTA
1 AATAATTAATAATAATAATAATTA
*
14880553 AATAATTAATAATAATAATAATTG
1 AATAATTAATAATAATAATAATTA
14880577 AATAA
1 AATAA
14880582 ACTAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AATAATTAATAATAATAATAATTA
Found at i:14880588 original size:16 final size:16
Alignment explanation
Indices: 14880463--14880581 Score: 68
Period size: 17 Copynumber: 7.3 Consensus size: 16
14880453 CTATTTTCAA
*
14880463 AATAATAATTAATTATT
1 AATAATAA-TAATAATT
*
14880480 AATAATTATTAAATAATT
1 AATAA-TAAT-AATAATT
14880498 AATAATAATAATAATT
1 AATAATAATAATAATT
** **
14880514 --T-GCAA-AATGTTT
1 AATAATAATAATAATT
*
14880526 AATAATAATTAATTATT
1 AATAATAA-TAATAATT
*
14880543 -ATAATTATTAAATAATT
1 AATAA-TAAT-AATAATT
14880560 AATAATAATAATAATT
1 AATAATAATAATAATT
14880576 GAATAA
1 -AATAA
14880582 ACTAATATAA
Statistics
Matches: 77, Mismatches: 14, Indels: 22
0.68 0.12 0.19
Matches are distributed among these distances:
12 5 0.06
13 2 0.03
14 2 0.03
15 2 0.03
16 19 0.25
17 30 0.39
18 17 0.22
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.42
Consensus pattern (16 bp):
AATAATAATAATAATT
Found at i:14880595 original size:62 final size:63
Alignment explanation
Indices: 14880463--14880622 Score: 198
Period size: 62 Copynumber: 2.5 Consensus size: 63
14880453 CTATTTTCAA
* * *
14880463 AATAATAATTAATTATTAATAATTATTAAATAATTAATAATAATAATAATTTGCAAAATGTTT
1 AATAATAATTAATTATTAATAATTATTAAATAATTAATAATAATAATAATTTGAAAAATATAT
14880526 AATAATAATTAATTATT-ATAATTATTAAATAATTAATAATAATAATAA-TTGAATAAACTAATA
1 AATAATAATTAATTATTAATAATTATTAAATAATTAATAATAATAATAATTTGAA-AAA-T-ATA
14880589 T
63 T
* *
14880590 AAATAATTGTAATTAATTATTTATAATAATTAA
1 -AATAA---TAATTAATTATTAATAATTATTAA
14880623 TCTATTATTA
Statistics
Matches: 85, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
61 4 0.05
62 34 0.40
63 18 0.21
64 2 0.02
65 5 0.06
68 12 0.14
69 10 0.12
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (63 bp):
AATAATAATTAATTATTAATAATTATTAAATAATTAATAATAATAATAATTTGAAAAATATAT
Found at i:14880634 original size:18 final size:17
Alignment explanation
Indices: 14880599--14880654 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
14880589 TAAATAATTG
14880599 TAATTAATTATT-TATAA
1 TAATTAATTATTAT-TAA
14880616 TAATTAATCTATTATTAA
1 TAATTAAT-TATTATTAA
14880634 T-ATTATATTATATATTAA
1 TAATTA-ATTAT-TATTAA
14880652 TAA
1 TAA
14880655 AGTAATCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
17 15 0.44
18 17 0.50
19 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATTAATTATTATTAA
Found at i:14880790 original size:34 final size:35
Alignment explanation
Indices: 14880717--14880787 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 35
14880707 ATTTTAATTA
*
14880717 ATTATGAATAATAATTAAAATATTCATAATTATCT
1 ATTATGAATAATAATTAAAATAATCATAATTATCT
14880752 ATTATGAA-AATAATTTAAAATTAATCTATATATTAT
1 ATTATGAATAATAA-TTAAAA-TAATC-ATA-ATTAT
14880788 TATAATATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
34 5 0.16
35 14 0.45
36 4 0.13
37 3 0.10
38 5 0.16
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (35 bp):
ATTATGAATAATAATTAAAATAATCATAATTATCT
Found at i:14881384 original size:19 final size:18
Alignment explanation
Indices: 14881350--14881388 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
14881340 ACGTTACTTT
14881350 ATTAAAAATAAATTATTA
1 ATTAAAAATAAATTATTA
*
14881368 ATTAAAATATTAATTATTA
1 ATTAAAA-ATAAATTATTA
14881387 AT
1 AT
14881389 ATTTCAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTAAAAATAAATTATTA
Found at i:14881736 original size:25 final size:26
Alignment explanation
Indices: 14881707--14881776 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
14881697 GAAATTACTA
*
14881707 ATATTATAAAAATATT-ATAATTATT
1 ATATTATAAAAATATTAATAATTAGT
* *
14881732 ATATTATAATAATATTAATTATTAGT
1 ATATTATAAAAATATTAATAATTAGT
14881758 AGTATTAT--AAATATTAATA
1 A-TATTATAAAAATATTAATA
14881777 TAATAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 24 0.63
26 8 0.21
27 6 0.16
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
ATATTATAAAAATATTAATAATTAGT
Found at i:14881748 original size:11 final size:11
Alignment explanation
Indices: 14881705--14881748 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
14881695 ACGAAATTAC
14881705 TAATATTATAA
1 TAATATTATAA
*
14881716 AAATATTATAA
1 TAATATTATAA
14881727 TTATTATATTATAA
1 -TA--ATATTATAA
14881741 TAATATTA
1 TAATATTA
14881749 ATTATTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 2 0.07
14 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATATTATAA
Found at i:14883324 original size:18 final size:18
Alignment explanation
Indices: 14883301--14883338 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14883291 TAATATCAAA
*
14883301 ACATCATCAGATTTTCAT
1 ACATCATCAAATTTTCAT
14883319 ACATCATCAAATTTTCAT
1 ACATCATCAAATTTTCAT
14883337 AC
1 AC
14883339 CAATATTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.37
Consensus pattern (18 bp):
ACATCATCAAATTTTCAT
Found at i:14883596 original size:6 final size:6
Alignment explanation
Indices: 14883585--14883617 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
14883575 AGGCTTCAGT
*
14883585 GAGGTG GAGGTG GAGGTG GAGATG GAGGTG GAG
1 GAGGTG GAGGTG GAGGTG GAGGTG GAGGTG GAG
14883618 AATAAAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.64, T:0.15
Consensus pattern (6 bp):
GAGGTG
Found at i:14885215 original size:73 final size:73
Alignment explanation
Indices: 14885109--14885292 Score: 257
Period size: 73 Copynumber: 2.5 Consensus size: 73
14885099 CTGGTTGAAT
* * * *
14885109 ACCCGATCGATCCTGT--CAAAGAGAGGATTGATCAGTTCTTCTTGGGTTCAGCAAAATTGGCTA
1 ACCCGATCGATCCTGTCCCAAAG-G-GGATCGATCAATTCTTCTTAGGTTCAACAAAATTGGCTA
14885172 CTGCCTTCT-C
64 CTGCCTT-TAC
* *
14885182 ACTCGATCGATTCTGTCCCAAAGGGGATCGATCAATTCTTCTTAGGTTCAACAAAATTGGCTACT
1 ACCCGATCGATCCTGTCCCAAAGGGGATCGATCAATTCTTCTTAGGTTCAACAAAATTGGCTACT
14885247 GCCTTTAC
66 GCCTTTAC
*
14885255 ACCCGATCGATCCTGTCCCAAAGGGGATCGATCGATTC
1 ACCCGATCGATCCTGTCCCAAAGGGGATCGATCAATTC
14885293 CTTATATTTT
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
72 1 0.01
73 92 0.93
74 1 0.01
75 5 0.05
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (73 bp):
ACCCGATCGATCCTGTCCCAAAGGGGATCGATCAATTCTTCTTAGGTTCAACAAAATTGGCTACT
GCCTTTAC
Found at i:14892966 original size:21 final size:21
Alignment explanation
Indices: 14892928--14892967 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14892918 ATCTTAAATT
*
14892928 AAAATAATTTTAATTAATATG
1 AAAATAATTTTAACTAATATG
14892949 AAAATAA-TTTATACTAATA
1 AAAATAATTTTA-ACTAATA
14892968 ATATTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
AAAATAATTTTAACTAATATG
Found at i:14893491 original size:22 final size:22
Alignment explanation
Indices: 14893463--14893512 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
14893453 ATTTATTTCC
14893463 TATTTAATG-ATATATATTTAA
1 TATTTAATGTATATATATTTAA
*
14893484 TTATTTAATGTTATATTTATTTAA
1 -TATTTAATG-TATATATATTTAA
14893508 TATTT
1 TATTT
14893513 TTATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 9 0.36
23 5 0.20
24 11 0.44
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (22 bp):
TATTTAATGTATATATATTTAA
Found at i:14894218 original size:20 final size:19
Alignment explanation
Indices: 14894182--14894322 Score: 71
Period size: 20 Copynumber: 7.3 Consensus size: 19
14894172 TTGAATTATC
14894182 ATAATTA-TATTAATAATT
1 ATAATTATTATTAATAATT
*
14894200 ATAATCTATTATTATTAATT
1 ATAAT-TATTATTAATAATT
* *
14894220 ATAATTATTTATAAATTTATT
1 ATAATTA-TTATTAA-TAATT
* *
14894241 AAATAATTAGTATTTAATAAAT
1 --ATAATTATTA-TTAATAATT
*
14894263 ATTAA-TATAATT-ATAATT
1 A-TAATTATTATTAATAATT
* *
14894281 GTAA--ATTAATAATTAA-T
1 ATAATTATTATTAA-TAATT
14894298 ATTAATTA-TATTATATAATT
1 A-TAATTATTATTA-ATAATT
14894318 ATAAT
1 ATAAT
14894323 ATAGTAACAG
Statistics
Matches: 92, Mismatches: 16, Indels: 29
0.67 0.12 0.21
Matches are distributed among these distances:
16 4 0.04
17 5 0.05
18 16 0.17
19 17 0.18
20 28 0.30
21 7 0.08
22 5 0.05
23 10 0.11
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (19 bp):
ATAATTATTATTAATAATT
Found at i:14894304 original size:17 final size:16
Alignment explanation
Indices: 14894263--14894322 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 16
14894253 TTTAATAAAT
14894263 ATTAATATAATT-ATA
1 ATTAATATAATTAATA
*
14894278 ATT-GTA-AATTAATA
1 ATTAATATAATTAATA
14894292 ATTAATATTAATT-AT-
1 ATTAATA-TAATTAATA
14894307 ATT-ATATAATT-ATA
1 ATTAATATAATTAATA
14894321 AT
1 AT
14894323 ATAGTAACAG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
13 11 0.29
14 13 0.34
15 8 0.21
16 2 0.05
17 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATTAATATAATTAATA
Found at i:14894347 original size:49 final size:43
Alignment explanation
Indices: 14894242--14894390 Score: 120
Period size: 47 Copynumber: 3.2 Consensus size: 43
14894232 AAATTTATTA
* *
14894242 AATAATTAGTATTTAATAAATATTAATATAATTATAATTGTAAATT
1 AATAATTAATA-TTAAT-TATATT-ATATAATTATAATTGTAAATT
14894288 AATAATTAATATTAATTATATTATATAATTATAATATAGTAACAGTT
1 AATAATTAATATTAATTATATTATATAATTATAAT-T-GTAA-A-TT
* * * *
14894335 AATATTGTTAATATTAATTGTATATAAATTATTATAATT-TAATATTT
1 AATA--ATTAATATTAATTATAT-TATATAATTATAATTGTAA-A-TT
14894382 AATATATTA
1 AATA-ATTA
14894391 GATTACTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
43 13 0.15
44 6 0.07
45 9 0.10
46 15 0.17
47 16 0.18
49 16 0.18
50 12 0.14
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.48
Consensus pattern (43 bp):
AATAATTAATATTAATTATATTATATAATTATAATTGTAAATT
Found at i:14894662 original size:27 final size:27
Alignment explanation
Indices: 14894632--14894692 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
14894622 AAAAGATAAT
*
14894632 ATTATAATTAGTA-AATTATAATTATT-A
1 ATTATAATTAATATAATT-TAA-TATTAA
*
14894659 ATTATATTTAATATAATTTAATATTAA
1 ATTATAATTAATATAATTTAATATTAA
14894686 ATTATAA
1 ATTATAA
14894693 AATAGTTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.14
27 21 0.72
28 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (27 bp):
ATTATAATTAATATAATTTAATATTAA
Found at i:14894726 original size:19 final size:19
Alignment explanation
Indices: 14894634--14894726 Score: 59
Period size: 19 Copynumber: 4.8 Consensus size: 19
14894624 AAGATAATAT
* *
14894634 TATAATTAGTAAATTATAA
1 TATAATTAATTAATTATAA
14894653 T-T-ATTAATTATATT-TAA
1 TATAATTAATTA-ATTATAA
14894670 TATAATTTAATATTAAATTATAA
1 TATAA-TT-A-ATT-AATTATAA
* * *
14894693 AATAGTT-ATGGAATTATAA
1 TATAATTAAT-TAATTATAA
14894712 TATAATTAATTAATT
1 TATAATTAATTAATT
14894727 GTTTACTAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 20
0.67 0.10 0.24
Matches are distributed among these distances:
17 10 0.18
18 5 0.09
19 21 0.38
20 4 0.07
21 1 0.02
22 8 0.14
23 7 0.12
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
TATAATTAATTAATTATAA
Found at i:14895346 original size:15 final size:15
Alignment explanation
Indices: 14895311--14895351 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
14895301 TTTATATTTT
14895311 TTTAATTCAATTTAATA
1 TTTAATT-AA-TTAATA
14895328 -TTAATTAATTAATA
1 TTTAATTAATTAATA
14895342 TTTAATTAAT
1 TTTAATTAAT
14895352 AAACAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.26
15 11 0.48
16 6 0.26
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
TTTAATTAATTAATA
Found at i:14895538 original size:19 final size:20
Alignment explanation
Indices: 14895506--14895558 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
14895496 ATTATTAATC
14895506 AAATTATAATTTAAAATTTA
1 AAATTATAATTTAAAATTTA
*
14895526 AAATTAT-ATTTAACATTTA
1 AAATTATAATTTAAAATTTA
*
14895545 ATATT-TAATATTAA
1 AAATTATAAT-TTAA
14895559 TATAATCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 1 0.03
19 17 0.59
20 11 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AAATTATAATTTAAAATTTA
Found at i:14895633 original size:28 final size:27
Alignment explanation
Indices: 14895578--14895648 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 27
14895568 AAATAAATCA
14895578 ATAATATAATATTAT--TAGTAATATT
1 ATAATATAATATTATAATAGTAATATT
*
14895603 ATAATATAATATTATAATA-TAATTGCTT
1 ATAATATAATATTATAATAGTAA-T-ATT
*
14895631 ATAATATTATATTATAAT
1 ATAATATAATATTATAAT
14895649 TATTTGAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 15 0.38
26 3 0.08
27 3 0.08
28 19 0.47
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (27 bp):
ATAATATAATATTATAATAGTAATATT
Found at i:14895634 original size:15 final size:13
Alignment explanation
Indices: 14895578--14895648 Score: 83
Period size: 13 Copynumber: 5.4 Consensus size: 13
14895568 AAATAAATCA
14895578 ATAATATAATATT
1 ATAATATAATATT
14895591 AT--TAGTAATATT
1 ATAATA-TAATATT
14895603 ATAATATAATATT
1 ATAATATAATATT
*
14895616 ATAATATAATTGCTT
1 ATAATATAA-T-ATT
*
14895631 ATAATATTATATT
1 ATAATATAATATT
14895644 ATAAT
1 ATAAT
14895649 TATTTGAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
11 2 0.04
12 9 0.18
13 25 0.50
14 4 0.08
15 10 0.20
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (13 bp):
ATAATATAATATT
Found at i:14895815 original size:15 final size:17
Alignment explanation
Indices: 14895783--14895817 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14895773 TTATATATAA
14895783 ATATAATTGTTAATATT
1 ATATAATTGTTAATATT
14895800 ATATAATT-TTAA-ATT
1 ATATAATTGTTAATATT
14895815 ATA
1 ATA
14895818 ATTATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 4 0.22
17 8 0.44
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATAATTGTTAATATT
Found at i:14895825 original size:23 final size:23
Alignment explanation
Indices: 14895762--14895826 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
14895752 AATTAATTAA
*
14895762 TTAACTTATAATTATATATAAAT
1 TTAAATTATAATTATATATAAAT
* * *
14895785 AT-AATTGTTAA-TATTATATAATT
1 TTAAATT-ATAATTA-TATATAAAT
14895808 TTAAATTATAATTATATAT
1 TTAAATTATAATTATATAT
14895827 TATACTATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
22 5 0.16
23 21 0.66
24 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAAATTATAATTATATATAAAT
Found at i:14896103 original size:26 final size:24
Alignment explanation
Indices: 14896046--14896104 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 24
14896036 CCATTCAATA
14896046 AATAATTATATTAATATAATTTATT
1 AATAATT-TATTAATATAATTTATT
*
14896071 --TAA-TTATTATTATAATATTATT
1 AATAATTTATTAATATAAT-TTATT
14896093 CAATAATTTATT
1 -AATAATTTATT
14896105 TTCAGTAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
21 11 0.39
22 6 0.21
23 3 0.11
25 3 0.11
26 5 0.18
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAATTTATTAATATAATTTATT
Found at i:14896471 original size:17 final size:17
Alignment explanation
Indices: 14896449--14896504 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
14896439 AATATTAATT
14896449 ATTTATTATAAATTTTA
1 ATTTATTATAAATTTTA
* *
14896466 ATTTATCATAAATATTA
1 ATTTATTATAAATTTTA
* *
14896483 ATATTACTATTAATATTTA
1 AT-TTATTATAAAT-TTTA
14896502 ATT
1 ATT
14896505 CAATTAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 17 0.55
18 9 0.29
19 5 0.16
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTATTATAAATTTTA
Found at i:14896670 original size:22 final size:23
Alignment explanation
Indices: 14896621--14896680 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 23
14896611 TCCAAAATAA
*
14896621 AATAACTATTATATTATAATATTAT
1 AATAA-TATT-TATTATAATAGTAT
14896646 AAT-ATATTTATTATAAT-GTACT
1 AATAATATTTATTATAATAGTA-T
14896668 AATAAATATTTAT
1 AAT-AATATTTAT
14896681 ACTTAACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.06
22 13 0.42
23 4 0.13
24 9 0.29
25 3 0.10
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (23 bp):
AATAATATTTATTATAATAGTAT
Found at i:14898112 original size:20 final size:21
Alignment explanation
Indices: 14898087--14898132 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
14898077 ATAACGTAAC
14898087 AATAAA-TTATGT-TATTATA
1 AATAAATTTATGTATATTATA
*
14898106 TAATAAATTTATTTATATTATA
1 -AATAAATTTATGTATATTATA
14898128 AATAA
1 AATAA
14898133 TTAGTTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 10 0.43
22 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
AATAAATTTATGTATATTATA
Found at i:14898134 original size:20 final size:22
Alignment explanation
Indices: 14898087--14898151 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 22
14898077 ATAACGTAAC
*
14898087 AATAAATTA-TGT-TATTATAT
1 AATAAATTAGTTTATATTATAT
14898107 AATAAATTTA-TTTATATTATA-
1 AATAAA-TTAGTTTATATTATAT
14898128 AAT-AATTAGTTTATATTAGTAT
1 AATAAATTAGTTTATATTA-TAT
14898150 AA
1 AA
14898152 CAATAATGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 10 0.26
22 9 0.23
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
AATAAATTAGTTTATATTATAT
Found at i:14898279 original size:15 final size:16
Alignment explanation
Indices: 14898250--14898280 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14898240 AAATTTATAA
14898250 TTAATTATAATATTAT
1 TTAATTATAATATTAT
14898266 TTAATTAT-ATATTAT
1 TTAATTATAATATTAT
14898281 AAATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATTATAATATTAT
Found at i:14898348 original size:29 final size:27
Alignment explanation
Indices: 14898316--14898386 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 27
14898306 TAATTATTCT
14898316 AAATATTAAATTATAATTATTTATTATTA
1 AAATATTAAATTATAATTATTT-TTA-TA
* *
14898345 AAATTAATAAAATA-AATTATTTTTATA
1 AAA-TATTAAATTATAATTATTTTTATA
14898372 ATAA-ATTAATATTAT
1 A-AATATTAA-ATTAT
14898387 TTAATGAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
26 4 0.12
27 6 0.18
28 5 0.15
29 11 0.32
30 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
AAATATTAAATTATAATTATTTTTATA
Found at i:14898354 original size:23 final size:25
Alignment explanation
Indices: 14898299--14898354 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 25
14898289 AAATTAAATC
14898299 AAAA-TAATAATTATTCTAAATATT
1 AAAATTAATAATTATTCTAAATATT
*
14898323 -AAATT-ATAATTATT-T-ATTATT
1 AAAATTAATAATTATTCTAAATATT
14898344 AAAATTAATAA
1 AAAATTAATAA
14898355 AATAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 5 0.18
22 6 0.21
23 16 0.57
24 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
AAAATTAATAATTATTCTAAATATT
Found at i:14898514 original size:19 final size:20
Alignment explanation
Indices: 14898492--14898546 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
14898482 AATAAAAATT
*
14898492 ATATTATATTAATTAAGT-A
1 ATATTATATTAATTAAATCA
* *
14898511 ATATTAAATTAAATAAATCA
1 ATATTATATTAATTAAATCA
14898531 ATACTT-TATTAATTAA
1 ATA-TTATATTAATTAA
14898547 TATTATAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 15 0.52
20 12 0.41
21 2 0.07
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (20 bp):
ATATTATATTAATTAAATCA
Found at i:14898604 original size:12 final size:11
Alignment explanation
Indices: 14898571--14898695 Score: 61
Period size: 10 Copynumber: 11.5 Consensus size: 11
14898561 AATTAGTAAC
14898571 TAATATAATTA
1 TAATATAATTA
*
14898582 TAA-ATAAATA
1 TAATATAATTA
14898592 -AATATAATTA
1 TAATATAATTA
14898602 TAATAGTAATTA
1 TAATA-TAATTA
*
14898614 TAGTA-ATATT-
1 TAATATA-ATTA
*
14898624 TAATATTATTA
1 TAATATAATTA
*
14898635 -ATTA-AATTTGA
1 TAATATAA-TT-A
*
14898646 TATTATAATT-
1 TAATATAATTA
14898656 TAATA-AATTA
1 TAATATAATTA
*
14898666 TTAAATATACTTCA
1 -T-AATATAATT-A
14898680 T-ATATAATTA
1 TAATATAATTA
14898690 TTAATA
1 -TAATA
14898696 ACCTTAATAA
Statistics
Matches: 87, Mismatches: 10, Indels: 33
0.67 0.08 0.25
Matches are distributed among these distances:
9 7 0.08
10 30 0.34
11 20 0.23
12 23 0.26
13 6 0.07
14 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (11 bp):
TAATATAATTA
Found at i:14899062 original size:2 final size:2
Alignment explanation
Indices: 14899055--14899096 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
14899045 TTTATAAATA
* *
14899055 AT AT AT AT A- AT AT AC AT AT AT AT AT A- AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14899095 AT
1 AT
14899097 TTGAATTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:14899077 original size:17 final size:17
Alignment explanation
Indices: 14899055--14899096 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
14899045 TTTATAAATA
14899055 ATATATATAATATACAT
1 ATATATATAATATACAT
*
14899072 ATATATATAATATATAT
1 ATATATATAATATACAT
*
14899089 AGATATAT
1 ATATATAT
14899097 TTGAATTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
ATATATATAATATACAT
Found at i:14899088 original size:15 final size:15
Alignment explanation
Indices: 14899047--14899095 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 15
14899037 ATAATTATTT
14899047 TATAA-ATA-ATATA
1 TATAATATATATATA
14899060 TATAATATACATATATA
1 TATAATAT--ATATATA
*
14899077 TATAATATATATAGA
1 TATAATATATATATA
14899092 TATA
1 TATA
14899096 TTTGAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 5 0.16
14 2 0.06
15 10 0.32
16 1 0.03
17 13 0.42
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (15 bp):
TATAATATATATATA
Found at i:14899879 original size:22 final size:24
Alignment explanation
Indices: 14899854--14899902 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
14899844 AACTAAATAG
* *
14899854 TAAAGTTTAATAAGTAAT-TT-AT
1 TAAAATTTAATAACTAATATTAAT
*
14899876 TAAAATTTATTAACTAATATTAAT
1 TAAAATTTAATAACTAATATTAAT
14899900 TAA
1 TAA
14899903 TAACAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 15 0.68
23 2 0.09
24 5 0.23
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (24 bp):
TAAAATTTAATAACTAATATTAAT
Found at i:14900165 original size:18 final size:18
Alignment explanation
Indices: 14900129--14900162 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14900119 ATATGTTATT
*
14900129 AATATTATTTAATAATTA
1 AATATCATTTAATAATTA
14900147 AATATCATTT-ATAATT
1 AATATCATTTAATAATT
14900163 TAATTAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
AATATCATTTAATAATTA
Found at i:14900185 original size:24 final size:25
Alignment explanation
Indices: 14900125--14900186 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 25
14900115 TCTTATATGT
*
14900125 TATTAATATT-ATTTAATAATTAAA
1 TATTATTATTAATTTAATAATTAAA
*
14900149 TATCATT-TATAATTTAATTAA-T-AA
1 TATTATTAT-TAATTTAA-TAATTAAA
14900173 TATTATTATTAATT
1 TATTATTATTAATT
14900187 ACTATTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
23 1 0.03
24 19 0.61
25 8 0.26
26 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTATTATTAATTTAATAATTAAA
Found at i:14900290 original size:15 final size:15
Alignment explanation
Indices: 14900270--14900326 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14900260 ATATTTTTAA
*
14900270 ATATTAATCAATATT
1 ATATTAATAAATATT
*
14900285 ATATTATTAAATATT
1 ATATTAATAAATATT
*
14900300 AATATAATAATTAATATT
1 -ATAT--TAATAAATATT
14900318 ATTATTAAT
1 A-TATTAAT
14900327 TAGTAGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
15 13 0.38
16 8 0.24
17 1 0.03
18 12 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAATAAATATT
Found at i:14900294 original size:25 final size:27
Alignment explanation
Indices: 14900259--14900321 Score: 85
Period size: 25 Copynumber: 2.4 Consensus size: 27
14900249 TTATAATTAA
*
14900259 TATATTTTTAAATATTAAT-CAAT-AT
1 TATATTATTAAATATTAATACAATAAT
*
14900284 TATATTATTAAATATTAATATAATAAT
1 TATATTATTAAATATTAATACAATAAT
14900311 TAATATTATTA
1 T-ATATTATTA
14900322 TTAATTAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 18 0.55
26 3 0.09
27 3 0.09
28 9 0.27
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
TATATTATTAAATATTAATACAATAAT
Found at i:14900339 original size:31 final size:30
Alignment explanation
Indices: 14900269--14900346 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
14900259 TATATTTTTA
* *
14900269 AATATTAATCAATATTA-TATTATTAAATATT
1 AATA-TAAT-AATAATATTATTATTAAATAGT
*
14900300 AATATAATAATTAATATTATTATTAATTAGT
1 AATATAATAA-TAATATTATTATTAAATAGT
* *
14900331 AGTTTAATAATAATAT
1 AATATAATAATAATAT
14900347 AATAATACCA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.05
30 14 0.35
31 24 0.60
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (30 bp):
AATATAATAATAATATTATTATTAAATAGT
Found at i:14900517 original size:31 final size:33
Alignment explanation
Indices: 14900477--14900537 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 33
14900467 ATAGCTTGTA
*
14900477 TTAATATTAATTAATTCGATATAT-ATTAATAT
1 TTAATATTAATTAATTCAATATATAATTAATAT
* *
14900509 TTAA-ATTAATTTATTTAATATATAATTAA
1 TTAATATTAATTAATTCAATATATAATTAA
14900538 AAATATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (33 bp):
TTAATATTAATTAATTCAATATATAATTAATAT
Found at i:14901425 original size:356 final size:359
Alignment explanation
Indices: 14901056--14901709 Score: 824
Period size: 356 Copynumber: 1.8 Consensus size: 359
14901046 AAATTAAAAC
* * *
14901056 AAGAGATTTTAAAAAATAAATTTGTTTACTAAATAATTTCAAAT-GATATGACTATTTA-AACAA
1 AAGAGATTTTAAAAAATAAATGTGTTTAC-AAATAAGTTCAAATAGATAAGACTA-TTAGAACAA
* * **
14901119 TTATCTGTTTAAAATTATTTT-ACCATTTTGTTTTGTCATAAAATAATTGTTTCAATTAATAAAA
64 TTATCTATTTAAAATCATTTTGACC-TTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAA
* * *
14901183 ACTTA-TCTGAAATAAAATAATACTACTTTATTAA-TATTTCAAAAATTATTAAGCAAGAGATTT
128 ACTTATTC-GAAAGAAAATAATACTAATTTATTAACT-TTTCAAAAATTAATAAGCAAGAGATTT
* *
14901246 -AAAAACTAAAGTTGTTTTTCAAAGC-AGTTCTAATAGTTATGACTATTTGAACAAATAT-TAAT
191 GAAAAACTAAAGTTGTTTATCAAA-CAAGTTCAAATAGTTATGACTATTTGAACAAATATCT-AT
* **
14901308 CTCAAATTGTTATG-ATCTTTGTTTTGTCATAAAACAATTATTTTTTATCATATAAGCTGATTCA
254 CTAAAATCATTATGAATCTTTGTTTTGTCATAAAACAATTATTTTTTATCATATAAGCTGATTCA
14901372 GATAAAAATAATACTAATTTAATAATATGTTGAAAATTAAT
319 GATAAAAATAATACTAATTTAATAATATGTTGAAAATTAAT
* * * * * *
14901413 AAGAGA-TTTAAAAAATAAATGTGTTTGCCAATCAGTTCAAATAGTTAAGATTATTAGAATAATT
1 AAGAGATTTTAAAAAATAAATGTGTTTACAAATAAGTTCAAATAGATAAGACTATTAGAACAATT
* * * * *
14901477 ATCTATTTCAAATCATTTTGACCTTTTGTTTAATCATAAAATAATTGTTTCAGTTCATACAAGCT
66 ATCTATTTAAAATCATTTTGACCTTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAAACT
* * * *
14901542 TATTCGAAAGAAAATAATACTAATTTATTAACTTTTGAAAGATTAATAAGCAGGATATTTGAAAA
131 TATTCGAAAGAAAATAATACTAATTTATTAACTTTTCAAAAATTAATAAGCAAGAGATTTGAAAA
* ** * * *
14901607 ACTAAATTTGTTTATCGGACAAGTTCAAATATTTATGACTATTTGAACAATTATCTATTTAAAAT
196 ACTAAAGTTGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATCTAAAAT
* * *
14901672 CATTGTGAATTTTTGTTTTGTCATAAAACAATTGTTTT
261 CATTATGAATCTTTGTTTTGTCATAAAACAATTATTTT
14901710 AGTTCACAAA
Statistics
Matches: 249, Mismatches: 39, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
355 14 0.06
356 134 0.54
357 72 0.29
358 29 0.12
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (359 bp):
AAGAGATTTTAAAAAATAAATGTGTTTACAAATAAGTTCAAATAGATAAGACTATTAGAACAATT
ATCTATTTAAAATCATTTTGACCTTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAAACT
TATTCGAAAGAAAATAATACTAATTTATTAACTTTTCAAAAATTAATAAGCAAGAGATTTGAAAA
ACTAAAGTTGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATCTAAAAT
CATTATGAATCTTTGTTTTGTCATAAAACAATTATTTTTTATCATATAAGCTGATTCAGATAAAA
ATAATACTAATTTAATAATATGTTGAAAATTAAT
Found at i:14901558 original size:176 final size:174
Alignment explanation
Indices: 14900744--14901788 Score: 797
Period size: 176 Copynumber: 5.9 Consensus size: 174
14900734 TATTAATATA
* * * * * *
14900744 AGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGATC-TTTATTTTGTCATACAACA
1 AGTTATGACTATTAGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
** * * * * * *
14900808 ATTGTTTCCTTTCATACAAGGTTATTTGGATTAAAATGATACTAATTTAATAATATTTCAAAAAT
66 ATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTT-AAAAAT
* * *
14900873 TAATAAGAGATTTAAAAAATAAATATGTTAACCGAACTAGTTCAAAT
130 TAATAAGAGATTTAAAAAATAAATGTGTTTA-CAAAC-AGTTCAAAT
* * * * * * * * *
14900920 AGTTAAGACTATCAAAATAATTATCTATTTCAAATCGTTCT-ATCCTTTTATTTAGTCAAAAAAC
1 AGTTATGACTATTAGAACAATTATCTATTTCAAATCATTATGA-CCTTTTGTTTTGTCATAAAAC
* * * * * *
14900984 AATTATTTCAGTTCATACAAGCTCATTTGGAATAAAATAATACTAATTTATTAACATTCAAAAAA
65 AATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-TAAAAA
* * * *
14901049 TTAAAACAAGAGATTTTAAAAAATAAATTTGTTTACTAAATAATTTCAAAT
129 TT--AATAAGAGA-TTTAAAAAATAAATGTGTTTAC-AAA-CAGTTCAAAT
* * * * *
14901100 -GATATGACTATTTA-AACAATTATCTGTTTAAAATTATT-TTACCATTTTGTTTTGTCATAAAA
1 AGTTATGACTA-TTAGAACAATTATCTATTTCAAATCATTATGACC-TTTTGTTTTGTCATAAAA
* * * * * *
14901162 TAATTGTTTCAATTAATAAAAACTTA-TCTGAAATAAAATAATACTACTTTATTAATATTTCAAA
64 CAATTGTTTCAGTTCATACAAGCTTATTC-GAAATAAAATAATACTAATTTATTAATATTT--AA
* * * *
14901226 AATTATTAAGCAAGAGATTTAAAAACTAAA-GTTGTTTTTCAAAGCAGTTCTAAT
126 AA--ATTAA-TAAGAGATTTAAAAAATAAATG-TG-TTTACAAA-CAGTTCAAAT
* * * ** *
14901280 AGTTATGACTATTTGAACAAATAT-TAATCTCAAATTGTTATGATC-TTTGTTTTGTCATAAAAC
1 AGTTATGACTATTAGAACAATTATCT-ATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAAC
* ** * * * * *
14901343 AATTATTT-TTTATCATATAAGCTGATTC-AGATAAAAATAATACTAATTTAATAATATGTTGAA
65 AATTGTTTCAGT-TCATACAAGCTTATTCGAAAT-AAAATAATACTAATTTATTAATAT-TTAAA
* *
14901406 AATTAATAAGAGATTTAAAAAATAAATGTGTTTGCCAATCAGTTCAAAT
127 AATTAATAAGAGATTTAAAAAATAAATGTGTTT-ACAAACAGTTCAAAT
* * * * ** *
14901455 AGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGACCTTTTGTTTAATCATAAAATA
1 AGTTATGACTATTAGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
* *
14901520 ATTGTTTCAGTTCATACAAGCTTATTCGAAAGAAAATAATACTAATTTATTAACT-TTTGAAAGA
66 ATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAA-TATTT-AAAAA
* * **
14901584 TTAATAAGCAGGATATTTGAAAAACTAAATTTGTTTATCGGACAAGTTCAAAT
129 TTAATAAG-A-G--ATTT-AAAAAATAAATGTGTTTA-CAAAC-AGTTCAAAT
* * * * **
14901637 ATTTATGACTATTTGAACAATTATCTATTTAAAATCATTGTGAATTTTTGTTTTGTCATAAAACA
1 AGTTATGACTATTAGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
* * * * * * * * *
14901702 ATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTATTTTTCTTAATATTTTGAAAA
66 ATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTA-ATTTATTAATA-TTTAAAAA
14901767 -T--TAAGAGATTTAAAAAATAAAT
129 TTAATAAGAGATTTAAAAAATAAAT
14901789 CAGTTTACTG
Statistics
Matches: 686, Mismatches: 138, Indels: 91
0.75 0.15 0.10
Matches are distributed among these distances:
175 58 0.08
176 129 0.19
177 82 0.12
178 6 0.01
179 106 0.15
180 127 0.19
181 58 0.08
182 107 0.16
183 10 0.01
184 3 0.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (174 bp):
AGTTATGACTATTAGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
ATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAATT
AATAAGAGATTTAAAAAATAAATGTGTTTACAAACAGTTCAAAT
Found at i:14901774 original size:356 final size:355
Alignment explanation
Indices: 14901056--14901797 Score: 813
Period size: 356 Copynumber: 2.1 Consensus size: 355
14901046 AAATTAAAAC
* * *
14901056 AAGAGATTTTAAAAAATAAATTTGTTTACTAAATAATTTCAAATGATATGACTATTTAAACAATT
1 AAGAGA-TTTAAAAAATAAATGTGTTTACTAAATAAGTTCAAATGATAAGACTATTTAAACAATT
* * **
14901121 ATCTGTTTAAAATTATTTTACCATTTTGTTTTGTCATAAAATAATTGTTTCAATTAATAAAAACT
65 ATCTATTTAAAATCATTTTACCATTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAAACT
* * *
14901186 TATCTGAAATAAAATAATACTACTTTATTAATATTTCAAAAATTATTAAGCAAGAGATTTAAAAA
130 TATCTGAAAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGCAAGAGATTTAAAAA
* * * *
14901251 CTAAAGTTGTTTTTCAAAGCAGTTCTAATAGTTATGACTATTTGAACAAATATTAATCTCAAATT
195 CTAAAGTTGTTTATCAAAGCAGTTCAAATAGTTATGACTATTTGAACAAATATTAATCTAAAATC
* * * * * *
14901316 GTTATGATCTTTGTTTTGTCATAAAACAATTATTTTTTATCATATAAGCTGATTCAGATAAAAAT
260 ATTATGATCTTTGTTTTGTCATAAAACAATTATTTTGTATCACAAAAGCTGATCCAAATAAAAAT
14901381 AATACTAATTTAATAATATGTTGAAAATTAAT
325 AATACTAATTTAATAATATGTTGAAAATT-AT
* * * * * *
14901413 AAGAGATTTAAAAAATAAATGTGTTTGC-CAATCAGTTCAAATAGTTAAGATTA-TTAGAATAAT
1 AAGAGATTTAAAAAATAAATGTGTTTACTAAATAAGTTCAAAT-GATAAGACTATTTA-AACAAT
* * * * *
14901476 TATCTATTTCAAATCATTTTGACC-TTTTGTTTAATCATAAAATAATTGTTTCAGTTCATACAAG
64 TATCTATTTAAAATCATTTT-ACCATTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAAA
* * * *
14901540 CTTAT-TCGAAAGAAAATAATACTAATTTATTAACT-TTTGAAAGATTAATAAGCAGGATATTTG
128 CTTATCT-GAAAGAAAATAATACTAATTTATTAA-TATTTCAAAAATTAATAAGCAAGAGATTT-
* ** * * *
14901603 AAAAACTAAATTTGTTTATCGGA-CAAGTTCAAATATTTATGACTATTTGAACAATTATCT-ATT
190 AAAAACTAAAGTTGTTTATCAAAGC-AGTTCAAATAGTTATGACTATTTGAACAAATAT-TAATC
* * * * *
14901666 TAAAATCATTGTGAATTTTTGTTTTGTCATAAAACAATTGTTTTAGT-TCACAAAAGTTTATCCA
253 TAAAATCATTATG-ATCTTTGTTTTGTCATAAAACAATTATTTT-GTATCACAAAAGCTGATCCA
* ** *
14901730 AA-ATAAAATAATACTATTTTTCTTAATATTTTGAAAA-T-T
316 AATA-AAAATAATACTA-ATTTAATAATATGTTGAAAATTAT
**
14901769 AAGAGATTTAAAAAATAAATCAGTTTACT
1 AAGAGATTTAAAAAATAAATGTGTTTACT
14901798 GACTTAGTTT
Statistics
Matches: 319, Mismatches: 53, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
355 15 0.05
356 161 0.50
357 71 0.22
358 55 0.17
359 17 0.05
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (355 bp):
AAGAGATTTAAAAAATAAATGTGTTTACTAAATAAGTTCAAATGATAAGACTATTTAAACAATTA
TCTATTTAAAATCATTTTACCATTTTGTTTAATCATAAAATAATTGTTTCAATTAATAAAAACTT
ATCTGAAAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGCAAGAGATTTAAAAAC
TAAAGTTGTTTATCAAAGCAGTTCAAATAGTTATGACTATTTGAACAAATATTAATCTAAAATCA
TTATGATCTTTGTTTTGTCATAAAACAATTATTTTGTATCACAAAAGCTGATCCAAATAAAAATA
ATACTAATTTAATAATATGTTGAAAATTAT
Found at i:14902076 original size:21 final size:22
Alignment explanation
Indices: 14902042--14902088 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
14902032 TATTTAATTT
14902042 TATTATATATAATTCTTTAAAG
1 TATTATATATAATTCTTTAAAG
* *
14902064 TATTA-ATTTAATTCTTTAAAT
1 TATTATATATAATTCTTTAAAG
14902085 TATT
1 TATT
14902089 TAAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATATATAATTCTTTAAAG
Found at i:14902106 original size:20 final size:18
Alignment explanation
Indices: 14902081--14902124 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
14902071 TTAATTCTTT
14902081 AAATTATTTAAAAATAATTA
1 AAATTATTT--AAATAATTA
*
14902101 AAATTATTTATATAATTA
1 AAATTATTTAAATAATTA
14902119 AAATTA
1 AAATTA
14902125 ACTAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.61
20 9 0.39
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATTATTTAAATAATTA
Found at i:14902807 original size:14 final size:14
Alignment explanation
Indices: 14902788--14902817 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14902778 AATAATTAAG
*
14902788 ATAATAATATATTT
1 ATAATAATATAATT
14902802 ATAATAATATAATT
1 ATAATAATATAATT
14902816 AT
1 AT
14902818 TTAGTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATAATATAATT
Found at i:14903009 original size:16 final size:16
Alignment explanation
Indices: 14902946--14903012 Score: 55
Period size: 16 Copynumber: 4.0 Consensus size: 16
14902936 ATTATTACAA
* *
14902946 TTAAATAAAATAATAT
1 TTAAATAAATTATTAT
*
14902962 TTAAAATAAATAATT-T
1 TT-AAATAAATTATTAT
*
14902978 ATTAATCATCAATTATTAT
1 -TTAA--ATAAATTATTAT
14902997 TTAAATAAATTATTAT
1 TTAAATAAATTATTAT
14903013 GATCTTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
16 16 0.40
17 11 0.28
18 12 0.30
19 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAATAAATTATTAT
Found at i:14903722 original size:18 final size:18
Alignment explanation
Indices: 14903701--14903738 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
14903691 TTAATTTTTA
14903701 TATTATTATTACA-AATAT
1 TATTATTATTA-ATAATAT
14903719 TATTATTATTAATAATAT
1 TATTATTATTAATAATAT
14903737 TA
1 TA
14903739 ATTTTACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTATTATTAATAATAT
Found at i:14903732 original size:15 final size:15
Alignment explanation
Indices: 14903676--14903738 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
14903666 CAATGTTAAC
*
14903676 TATTAGTAATTATTAT
1 TATTATTAA-TATTAT
*
14903692 TAATT-TTTATATTAT
1 T-ATTATTAATATTAT
**
14903707 TATTACAAATATTAT
1 TATTATTAATATTAT
*
14903722 TATTATTAATAATAT
1 TATTATTAATATTAT
14903737 TA
1 TA
14903739 ATTTTACTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
14 3 0.08
15 28 0.76
16 3 0.08
17 3 0.08
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (15 bp):
TATTATTAATATTAT
Found at i:14904589 original size:13 final size:13
Alignment explanation
Indices: 14904570--14904602 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14904560 TCATAGTAAT
14904570 TATTATAATATGTA
1 TATTATAAT-TGTA
14904584 -ATTATAATTGTA
1 TATTATAATTGTA
14904596 TATTATA
1 TATTATA
14904603 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (13 bp):
TATTATAATTGTA
Found at i:14904615 original size:25 final size:25
Alignment explanation
Indices: 14904570--14904629 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
14904560 TCATAGTAAT
* *
14904570 TATTATAATATGTAATTATAATTGTA
1 TATTAT-ATATGTAATAATAATTATA
*
14904596 TATTATATAT-TATATAATAATTATT
1 TATTATATATGTA-ATAATAATTATA
14904621 TATTATATA
1 TATTATATA
14904630 ATTTAATTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TATTATATATGTAATAATAATTATA
Found at i:14904624 original size:18 final size:18
Alignment explanation
Indices: 14904597--14904631 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14904587 ATAATTGTAT
14904597 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
14904615 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
14904632 TTAATTAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:14905681 original size:177 final size:179
Alignment explanation
Indices: 14905310--14905682 Score: 416
Period size: 177 Copynumber: 2.1 Consensus size: 179
14905300 ATTTGAAATT
* * * * * *
14905310 AAATAGTCATAACTATTTGATCTAGTTTGGTAAACATATTTATTTTTTTAATTTTTTACTTATTA
1 AAATAGTCATAATTATTTGATCTAGTTTGATAAAAAGATTTATTTTTTTAA-TATCTACTTATTA
** * * *
14905375 ATTGTCAAAATATTAATAAATTAGTATTATTTAAATCTGAATAAGCTTGTATGAATAGAAACTAT
65 ATTGTCAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAATAGAAACTAT
* *
14905440 TGTTTATAATAGAACAAAAAGTAATAACAATTTGAAATAAATAATTGCTC
130 TGTTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTC
*
14905490 AAATAGTCATAATTATTTGAAT-TGGTTTGATAAAAAGATTTA-TTTTTTAA-ATCT-CTTATTA
1 AAATAGTCATAATTATTTG-ATCTAGTTTGATAAAAAGATTTATTTTTTTAATATCTACTTATTA
* ** * * *
14905551 ATTTTTGAAATATTAATAGATTAGTATTATTTTATTCCAAACAAACTTATATGAACTA-AAAC-A
65 ATTGTCAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAA-TAGAAACTA
* * * ** * *
14905614 TTTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTC
129 -TTG-TTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTC
14905667 AAATAGTCATAATTAT
1 AAATAGTCATAATTAT
14905683 CAAAATTGGT
Statistics
Matches: 162, Mismatches: 27, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
175 1 0.01
176 58 0.36
177 59 0.36
179 8 0.05
180 34 0.21
181 2 0.01
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (179 bp):
AAATAGTCATAATTATTTGATCTAGTTTGATAAAAAGATTTATTTTTTTAATATCTACTTATTAA
TTGTCAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAATAGAAACTATT
GTTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTC
Found at i:14905745 original size:177 final size:175
Alignment explanation
Indices: 14905370--14905745 Score: 382
Period size: 177 Copynumber: 2.1 Consensus size: 175
14905360 ATTTTTTACT
* * ** * * *
14905370 TATTAATTGTCAAAATATTAATAAATTAGTATTATTTAAATCTGAATAAGCTTGTATGAATAGAA
1 TATTAATTTTAAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAATAGAA
* *
14905435 ACTATTGTTTATAATAGAACAAAAAGTAATAACAATTTGAAATAAATAATTGCTCAAATAGTCAT
66 ACTATTGTTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGTCAT
*** * * * **
14905500 AATTATTTGAATTGGTTTGATAAAAAGATTTATTTTTTAAATCTCT
131 AATTATCAAAATTGGTTTGATAAAAACA-TAATTTTATAAATCTAA
** * * *
14905546 TATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTCCAAACAAACTTATATGAACTA-A
1 TATTAATTTTAAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAA-TAGA
* * * ** * *
14905610 AAC-ATTTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGT
65 AACTA-TTG-TTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGT
* *
14905674 CATAATTATCAAAATTGGTTATGAATATAAACA-AATTTTAT-AATTTAA
128 CATAATTATCAAAATTGGTT-TG-ATAAAAACATAATTTTATAAATCTAA
14905722 TATTAATTTTAAAAATAATTAATA
1 TATTAATTTTAAAAAT-ATTAATA
14905746 TTATTAAATA
Statistics
Matches: 162, Mismatches: 32, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
175 1 0.01
176 74 0.46
177 78 0.48
178 2 0.01
179 7 0.04
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (175 bp):
TATTAATTTTAAAAATATTAATAAATTAGTATTATTTAAATCCAAACAAACTTATATGAATAGAA
ACTATTGTTTATAATAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGTCAT
AATTATCAAAATTGGTTTGATAAAAACATAATTTTATAAATCTAA
Done.