Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 73 of 160
Found at i:14907565 original size:15 final size:15
Alignment explanation
Indices: 14907545--14907595 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
14907535 ATCTCCTACT
14907545 TATTAATTTTTTAAA
1 TATTAATTTTTTAAA
*** *
14907560 TATTAATAAATT-AG
1 TATTAATTTTTTAAA
*
14907574 TACTAATTTTTTAAA
1 TATTAATTTTTTAAA
14907589 TATTAAT
1 TATTAAT
14907596 AAATTAGTAC
Statistics
Matches: 25, Mismatches: 10, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (15 bp):
TATTAATTTTTTAAA
Found at i:14907575 original size:182 final size:177
Alignment explanation
Indices: 14907107--14907575 Score: 464
Period size: 182 Copynumber: 2.6 Consensus size: 177
14907097 AATTTAGTAT
* ** * * * * *
14907107 GATTTGAAATAAATAAATGTTCAAATTTTTATAACTAATTGAACT-AGTATGGTAAATAGATTTA
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGA-TTTGATAAACAGATTTA
* * * *
14907171 TTTATTAAA--TCT-CTTAGTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACA
65 TTTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAACA
* *
14907233 AACTTATATGAACAAAAACATTTGTTTTACGACAAAACAAAAGGTAAC
130 AACTTATATGAACAAAAACAATTGTTTTACGACAAAACAAAAGATAAC
* * * * * * * * *
14907281 GATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATTG-GTTCAGTAAACAAATTTA
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGA-TAAACAGATTTA
* * * * *
14907345 TTTTTTAAATCTATCAGTTATTAA-ATTTCATAATATTACTAGATTAGTATTATTTTATTTCGAA
65 TTTTTTAAATCTCT-ACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTTCGAA
* * * * * * * *
14907409 TAAGCTTGTATGAAGATAAATAATTGTTTTATGACAAAGCAAAAACGTTATAAC
128 CAAACTTATATGAACAAAAACAATTGTTTTACGACAAAAC-AAAA-G--ATAAC
* *
14907463 GATTAGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAACAGATTTAT
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAACAGATTTAT
*
14907528 TTTTTAAATCTCCTACTTATTAATTTTTTAAATATTAATAAATTAGTA
66 TTTTTAAATCT-CTACTTATTAATTTTTCAAATATTAATAAATTAGTA
14907576 CTAATTTTTT
Statistics
Matches: 229, Mismatches: 52, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
173 1 0.00
174 52 0.23
176 2 0.01
177 4 0.02
178 67 0.29
179 4 0.02
180 1 0.00
182 90 0.39
183 8 0.03
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (177 bp):
GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAACAGATTTAT
TTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAACAA
ACTTATATGAACAAAAACAATTGTTTTACGACAAAACAAAAGATAAC
Found at i:14907580 original size:29 final size:29
Alignment explanation
Indices: 14907548--14907611 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
14907538 TCCTACTTAT
14907548 TAATTTTTTAAATATTAATAAATTAGTAC
1 TAATTTTTTAAATATTAATAAATTAGTAC
14907577 TAATTTTTTAAATATTAATAAATTAGTAC
1 TAATTTTTTAAATATTAATAAATTAGTAC
14907606 T-ATTTT
1 TAATTTT
14907612 ATTCTGAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.14
29 30 0.86
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (29 bp):
TAATTTTTTAAATATTAATAAATTAGTAC
Found at i:14907765 original size:210 final size:211
Alignment explanation
Indices: 14907376--14907779 Score: 550
Period size: 210 Copynumber: 1.9 Consensus size: 211
14907366 TAAATTTCAT
* * * * *
14907376 AATATTACTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAGATAAATAATTGTTTTAT
1 AATATTAATAAATTAGTACTATTTTATTTCGAATAAGCTTGTATGAAGAAAAACAATTGTTTTAT
* * *
14907441 GACAAAGCAAAAACGTTATAACGATTAGAAATATATAATTGTTCAAATAGTCATAACTATTTGAA
66 GACAAAACAAAAACGTTATAACGATTAGAAATAGATAATTGTTCAAATAGCCATAACTATTTGAA
** *
14907506 CTGATTTGATAAACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTT-TAAATATTAATAAA
131 CTGATTTGATAAACAGATTTATGCTTTAAATCTCCTACTTATCAATTTTTAT-AATATTAATAAA
14907570 TTAGTACTAATTTTTTA
195 TTAGTACTAATTTTTTA
* *
14907587 AATATTAATAAATTAGTACTATTTTA-TTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTA
1 AATATTAATAAATTAGTACTATTTTATTTC-GAATAAGCTTGTATGAAGAAAAACAATTGTTTTA
* * * * * *
14907651 TGAGAAAAC-AAAA-GTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTG
65 TGACAAAACAAAAACGTT-ATAACGATTAGAAATAGATAATTGTTCAAATAGCCATAACTATTTG
14907714 AACTGATTTGATAAACTA-ATTTATGCTTTAAATCT-CTAACTTATCAATTTTTATAATATTAAT
129 AACTGATTTGATAAAC-AGATTTATGCTTTAAATCTCCT-ACTTATCAATTTTTATAATATTAAT
14907777 AAA
192 AAA
14907780 GTAATATTAT
Statistics
Matches: 169, Mismatches: 19, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
209 5 0.03
210 102 0.60
211 62 0.37
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (211 bp):
AATATTAATAAATTAGTACTATTTTATTTCGAATAAGCTTGTATGAAGAAAAACAATTGTTTTAT
GACAAAACAAAAACGTTATAACGATTAGAAATAGATAATTGTTCAAATAGCCATAACTATTTGAA
CTGATTTGATAAACAGATTTATGCTTTAAATCTCCTACTTATCAATTTTTATAATATTAATAAAT
TAGTACTAATTTTTTA
Found at i:14908014 original size:181 final size:177
Alignment explanation
Indices: 14907577--14908028 Score: 448
Period size: 181 Copynumber: 2.5 Consensus size: 177
14907567 AAATTAGTAC
* *
14907577 TAATTTTTTAAATATTAATAAATTAGTACTATTTTA-TTCTGAATAGGCTTGTATGATGAAAAAC
1 TAATTTTTT-AATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGATG--AAAC
* * * * * * * *
14907641 AATTGTTTTATGAGAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATA
62 AATTGTTTTATGATAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCAAAA
* **
14907706 ATTATTTGAACTGATTTGATAAACTAATTTATGCTTTAAATCTCTAACTTA
127 AATATTTGAACTGATTCAATAAACTAATTTATGCTTTAAATCTCTAACTTA
* * * *
14907757 TCAATTTTTATAATATTAATAAAGTAATATTATTTTATTT-TAGATAAGCTTTTATGAACTGAAA
1 T-AATTTTT-TAATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTATG-A-TGAAA
* * *
14907821 CAATTGTTTTATGATAAAATATAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTAAA
61 CAATTGTTTTATGATAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCAAA
** * * *
14907886 AAATATTTGAACTTG-TTCAATAAA-TAGATTT-TTTTTTCTAATTTCTTACTTAA
126 AAATATTTGAAC-TGATTCAATAAACTA-ATTTATGCTTT-AAATCTCTAACTT-A
* * *
14907939 TAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGAGTTGAAGCA
1 TAATTTTTT-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGA--TGAAACA
*
14908004 ATTATTTTATGACT-AAATAAAAGGT
63 ATTGTTTTATGA-TAAAATAAAAGGT
14908029 TAAAACAATT
Statistics
Matches: 223, Mismatches: 35, Indels: 27
0.78 0.12 0.09
Matches are distributed among these distances:
180 10 0.04
181 201 0.90
182 10 0.04
183 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (177 bp):
TAATTTTTTAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATGAAACAATT
GTTTTATGATAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCAAAAAATA
TTTGAACTGATTCAATAAACTAATTTATGCTTTAAATCTCTAACTTA
Found at i:14908248 original size:11 final size:11
Alignment explanation
Indices: 14908232--14908257 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14908222 ACTATATAGT
14908232 TAATTAAAATA
1 TAATTAAAATA
14908243 TAATTAAAATA
1 TAATTAAAATA
14908254 TAAT
1 TAAT
14908258 CAATCTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATTAAAATA
Found at i:14908772 original size:16 final size:16
Alignment explanation
Indices: 14908736--14908800 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
14908726 AAAATTATTT
14908736 TAATAT-TTAA-AATA
1 TAATATGTTAATAATA
*
14908750 TTAAATATGTTATTAATA
1 -T-AATATGTTAATAATA
14908768 TAATAT-TTAATAATA
1 TAATATGTTAATAATA
*
14908783 CAA-ATAGTTAATAATA
1 TAATAT-GTTAATAATA
14908799 TA
1 TA
14908801 TTAAATTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 2 0.05
15 11 0.27
16 20 0.49
17 4 0.10
18 4 0.10
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (16 bp):
TAATATGTTAATAATA
Found at i:14908774 original size:32 final size:31
Alignment explanation
Indices: 14908736--14908800 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
14908726 AAAATTATTT
* *
14908736 TAATATTTAA-AATATTAAATATGTTATTAATA
1 TAATATTTAATAATA-CAAATA-GTTAATAATA
14908768 TAATATTTAATAATACAAATAGTTAATAATA
1 TAATATTTAATAATACAAATAGTTAATAATA
14908799 TA
1 TA
14908801 TTAAATTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 11 0.37
32 15 0.50
33 4 0.13
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (31 bp):
TAATATTTAATAATACAAATAGTTAATAATA
Found at i:14910162 original size:28 final size:29
Alignment explanation
Indices: 14910118--14910188 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
14910108 TATTCATTAA
*
14910118 TAAATATTGATAA-TTAAATA-ATAAAAAT
1 TAAATATT-TTAATTTAAATATATAAAAAT
* *
14910146 TAAATATTTTAATTTAAATATTTAAAATT
1 TAAATATTTTAATTTAAATATATAAAAAT
14910175 TAAA-ATTTTTAATT
1 TAAATA-TTTTAATT
14910189 ATTAACATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.08
28 16 0.43
29 18 0.49
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (29 bp):
TAAATATTTTAATTTAAATATATAAAAAT
Found at i:14910169 original size:13 final size:14
Alignment explanation
Indices: 14910145--14910188 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
14910135 ATAATAAAAA
14910145 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
14910159 TTAAATATTTAAAAT
1 TTAAATATTT-TAAT
14910174 TTAAA-ATTTTTAAT
1 TTAAATA-TTTTAAT
14910188 T
1 T
14910189 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:14910193 original size:23 final size:24
Alignment explanation
Indices: 14910158--14910202 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
14910148 AATATTTTAA
*
14910158 TTTAAATATTTAAAATTTAAAATT
1 TTTAAATATTTAAAATTCAAAATT
* *
14910182 TTTAATTA-TTAACATTCAAAA
1 TTTAAATATTTAAAATTCAAAA
14910203 CTTTAATAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAATATTTAAAATTCAAAATT
Found at i:14911549 original size:14 final size:14
Alignment explanation
Indices: 14911530--14911559 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14911520 TATTTACACA
*
14911530 ATTATATCGTAATT
1 ATTATATCATAATT
14911544 ATTATATCATAATT
1 ATTATATCATAATT
14911558 AT
1 AT
14911560 ATTAGATACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (14 bp):
ATTATATCATAATT
Found at i:14911647 original size:34 final size:33
Alignment explanation
Indices: 14911591--14911654 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
14911581 ATTAATGATA
*
14911591 AATAATTATATAATTTAAAATTAATATTTATAGC
1 AATAATTATAAAATTTAAAATTAAT-TTTATAGC
*
14911625 AATAATT-TAAAATTATATAATTAATTTTAT
1 AATAATTATAAAATT-TAAAATTAATTTTAT
14911655 TACTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 11 0.41
34 16 0.59
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (33 bp):
AATAATTATAAAATTTAAAATTAATTTTATAGC
Found at i:14912727 original size:182 final size:181
Alignment explanation
Indices: 14912431--14912837 Score: 421
Period size: 182 Copynumber: 2.2 Consensus size: 181
14912421 TAAAGGTTAT
* ** * * * *
14912431 AACGATTTAAAATAG-TCAATTATTCAAATAGTAATAACTATTTGTACTTGTGTGGTAAATAGAT
1 AACGATTTGAAATAGAT-AATTATTC-AATAGTCTTAACTATTTGTAATTGTATGGTAAACAAAT
* * * *
14912495 TTATTTTTCTAAAATCTCATTTTTATTAATTTTTTGAGTGTTACTAAATTAGTATTAATTTATTC
64 TTATTTTTCTAAAATCTCATTGTTATTAATTTTTTGAATATTACTAAATTAGTATTAATTTAATC
* * ** * * * * * *
14912560 TAAATAACCTTTTATGAACTAAAACAATTGTTTTATAAACCAAATAAAATATTAG
129 CAAATAACCTTGTACAAACAAAAAC-ATTATTTTA-AAACAAAAGAAAAGATCAG
* *
14912615 AATGATTTGAAATAGATAATTATTCTAATAGTCTTAACCATTTG-AATTGATATGGTAAACAAAT
1 AACGATTTGAAATAGATAATTATTC-AATAGTCTTAACTATTTGTAATTG-TATGGTAAACAAAT
* *
14912679 TTATTTTT-T-AAATCTC-TTAGTTATTAA-TTTTTGAAATATTATTAAATTAGTATTATTTTAA
64 TTATTTTTCTAAAATCTCATT-GTTATTAATTTTTTG-AATATTACTAAATTAGTATTAATTTAA
* * * *
14912740 TCCAAATAAGCTTGTACAAACAAAAACATTATTTTACAACAAAAGAAAAGGTCAT
127 TCCAAATAACCTTGTACAAACAAAAACATTATTTTAAAACAAAAGAAAAGATCAG
*
14912795 AACGATTTGAAATAGATAATCATTCATATAGTCTTAACTATTT
1 AACGATTTGAAATAGATAATTATTCA-ATAGTCTTAACTATTT
14912838 CAACTGGTTT
Statistics
Matches: 185, Mismatches: 33, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
179 1 0.01
180 50 0.27
181 16 0.09
182 57 0.31
183 5 0.03
184 55 0.30
185 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.42
Consensus pattern (181 bp):
AACGATTTGAAATAGATAATTATTCAATAGTCTTAACTATTTGTAATTGTATGGTAAACAAATTT
ATTTTTCTAAAATCTCATTGTTATTAATTTTTTGAATATTACTAAATTAGTATTAATTTAATCCA
AATAACCTTGTACAAACAAAAACATTATTTTAAAACAAAAGAAAAGATCAG
Found at i:14912863 original size:180 final size:184
Alignment explanation
Indices: 14912422--14912865 Score: 454
Period size: 180 Copynumber: 2.4 Consensus size: 184
14912412 TTGTTTTAAT
* * ** * * *
14912422 AAAGGTTATAACGATTTAAAATAG-TCAATTATTCAAATAGTAATAACTATTTGTACTTGTGTGG
1 AAAGGTTATAACGATTTGAAATAGAT-AATTATTCATATAGTCTTAACTATTTGAACTGGTATGG
* * *
14912486 TAAATAGATTTATTTTTCTAAAATCTCATTTTTATTAATTTTTTGAGTGTTACTAAATTAGTATT
65 TAAATAGATTTATTTTTCTAAAATCTCATTGTTATTAATTTTTTGAATATTACTAAATTAGTATT
* * * ** * * * *
14912551 AATTTATTCTAAATAACCTTTTATGAACTAAAACAATTGTTTTATAAACCAAATA
130 AATTTAATCCAAATAACCTTGTACAAACAAAAACAATTATTTTATAAACAAAAGA
** * * * * *
14912606 AAATATTAGAATGATTTGAAATAGATAATTATTC-TAATAGTCTTAACCATTTGAATTGATATGG
1 AAAGGTTATAACGATTTGAAATAGATAATTATTCAT-ATAGTCTTAACTATTTGAACTGGTATGG
* * *
14912670 TAAACAAATTTATTTTT-T-AAATCTC-TTAGTTATTAA-TTTTTGAAATATTATTAAATTAGTA
65 TAAATAGATTTATTTTTCTAAAATCTCATT-GTTATTAATTTTTTG-AATATTACTAAATTAGTA
* * *
14912731 TTATTTTAATCCAAATAAGCTTGTACAAACAAAAAC-ATTATTTTA-CAACAAAAGA
128 TTAATTTAATCCAAATAACCTTGTACAAACAAAAACAATTATTTTATAAACAAAAGA
* * * * *
14912786 AAAGGTCATAACGATTTGAAATAGATAATCATTCATATAGTCTTAACTATTTCAACTGGTTTGGC
1 AAAGGTTATAACGATTTGAAATAGATAATTATTCATATAGTCTTAACTATTTGAACTGGTATGGT
*
14912851 AATTAGATTTATTTT
66 AAATAGATTTATTTT
14912866 ATTTCAAATA
Statistics
Matches: 208, Mismatches: 47, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
180 70 0.34
181 17 0.08
182 57 0.27
183 1 0.00
184 62 0.30
185 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (184 bp):
AAAGGTTATAACGATTTGAAATAGATAATTATTCATATAGTCTTAACTATTTGAACTGGTATGGT
AAATAGATTTATTTTTCTAAAATCTCATTGTTATTAATTTTTTGAATATTACTAAATTAGTATTA
ATTTAATCCAAATAACCTTGTACAAACAAAAACAATTATTTTATAAACAAAAGA
Found at i:14913168 original size:35 final size:39
Alignment explanation
Indices: 14913087--14913170 Score: 97
Period size: 38 Copynumber: 2.2 Consensus size: 39
14913077 ATTTTTTACC
*
14913087 ATAATTATTTCAAATCAAATTAACTTATTTAATATTTAT
1 ATAATTAATTCAAATCAAATTAACTTATTTAATATTTAT
*
14913126 ATCAATTAATTC-AAT-AAATTATATTTA-TTAATA-TTA-
1 AT-AATTAATTCAAATCAAATTA-ACTTATTTAATATTTAT
14913162 ATAATTAAT
1 ATAATTAAT
14913171 ATAATCATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
35 7 0.17
36 2 0.05
37 3 0.07
38 12 0.29
39 9 0.22
40 8 0.20
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (39 bp):
ATAATTAATTCAAATCAAATTAACTTATTTAATATTTAT
Found at i:14913170 original size:7 final size:7
Alignment explanation
Indices: 14913152--14913210 Score: 61
Period size: 7 Copynumber: 8.6 Consensus size: 7
14913142 AATTATATTT
14913152 ATTAAT-
1 ATTAATA
14913158 ATTAATA
1 ATTAATA
14913165 ATTAAT-
1 ATTAATA
*
14913171 A-TAATC
1 ATTAATA
14913177 ATTAATAA
1 ATTAAT-A
14913185 ATTAAATA
1 ATT-AATA
*
14913193 TTTAATA
1 ATTAATA
14913200 ATTAATA
1 ATTAATA
14913207 ATTA
1 ATTA
14913211 TATATTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
5 4 0.09
6 8 0.18
7 24 0.53
8 6 0.13
9 3 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTAATA
Found at i:14913180 original size:12 final size:13
Alignment explanation
Indices: 14913152--14913225 Score: 62
Period size: 12 Copynumber: 5.5 Consensus size: 13
14913142 AATTATATTT
14913152 ATTAATATTAATA
1 ATTAATATTAATA
*
14913165 ATTAATA-TAATC
1 ATTAATATTAATA
14913177 ATTAATAAATTAAATA
1 ATTAAT--ATT-AATA
*
14913193 TTTAATAATTAATA
1 ATTAAT-ATTAATA
*
14913207 ATTATATATTTA-A
1 ATTA-ATATTAATA
14913220 ATTAAT
1 ATTAAT
14913226 TATATTAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
12 12 0.24
13 12 0.24
14 12 0.24
15 7 0.14
16 8 0.16
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTAATATTAATA
Found at i:14913232 original size:22 final size:21
Alignment explanation
Indices: 14913177--14913232 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
14913167 TAATATAATC
*
14913177 ATTAA-TAAATTAAATATTTA
1 ATTAATTATATTAAATATTTA
*
14913197 A-TAATTAATAATTATATATTTAA
1 ATTAATT-AT-ATTAAATATTT-A
14913220 ATTAATTATATTA
1 ATTAATTATATTA
14913233 GTTAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
19 3 0.10
20 2 0.07
21 1 0.03
22 14 0.48
23 4 0.14
24 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAATTATATTAAATATTTA
Found at i:14913239 original size:18 final size:17
Alignment explanation
Indices: 14913205--14913243 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
14913195 TAATAATTAA
*
14913205 TAATTATATATTTAAAT
1 TAATTATATAGTTAAAT
14913222 TAATTATATTAGTTAAAT
1 TAATTATA-TAGTTAAAT
14913240 TAAT
1 TAAT
14913244 ATAAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TAATTATATAGTTAAAT
Found at i:14913696 original size:10 final size:10
Alignment explanation
Indices: 14913681--14913705 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14913671 ACCAGTCATA
14913681 TTAATTATCT
1 TTAATTATCT
14913691 TTAATTATCT
1 TTAATTATCT
14913701 TTAAT
1 TTAAT
14913706 ATTAATATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (10 bp):
TTAATTATCT
Found at i:14913855 original size:24 final size:26
Alignment explanation
Indices: 14913796--14913857 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
14913786 TTTAATTATC
14913796 TATTTTAATTGT-A-ATTATATAACTA
1 TATTTTAATT-TAATATTATATAACTA
*
14913821 TATTTTTATTTAATATTATATAA-TA
1 TATTTTAATTTAATATTATATAACTA
14913846 TA-TTTAATTTAA
1 TATTTTAATTTAA
14913858 CAATAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 10 0.30
25 14 0.42
26 9 0.27
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
TATTTTAATTTAATATTATATAACTA
Found at i:14913942 original size:22 final size:22
Alignment explanation
Indices: 14913875--14913942 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
14913865 TTAATTCAAT
*
14913875 TATTATT-ATTTATAAATTAATA-
1 TATTATTAATATATAAATT--TAC
* **
14913897 TAATATTAA-ATATTAAATAAAC
1 TATTATTAATATA-TAAATTTAC
14913919 TATTATTAATATATAAATTTAC
1 TATTATTAATATATAAATTTAC
14913941 TA
1 TA
14913943 ATAGTTTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
21 1 0.03
22 25 0.71
23 9 0.26
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTATTAATATATAAATTTAC
Found at i:14914069 original size:14 final size:15
Alignment explanation
Indices: 14914050--14914090 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
14914040 AATTGTTTTT
14914050 ATATAAATAATA-TA
1 ATATAAATAATATTA
14914064 ATATAAATAATATTA
1 ATATAAATAATATTA
* *
14914079 AAATTAATAATA
1 ATATAAATAATA
14914091 AATTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAAATAATATTA
Found at i:14914089 original size:15 final size:14
Alignment explanation
Indices: 14914052--14914090 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
14914042 TTGTTTTTAT
*
14914052 ATAAATAATATAAT
1 ATAAATAATATAAA
14914066 ATAAATAATATTAAA
1 ATAAATAATA-TAAA
*
14914081 ATTAATAATA
1 ATAAATAATA
14914091 AATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATAATATAAA
Found at i:14914109 original size:18 final size:17
Alignment explanation
Indices: 14914088--14914125 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
14914078 AAAATTAATA
*
14914088 ATAAATTATTATTATTAT
1 ATAAATTAGTATTATT-T
14914106 ATAAATTAGTATTATTT
1 ATAAATTAGTATTATTT
14914123 ATA
1 ATA
14914126 TTAGTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATAAATTAGTATTATTT
Found at i:14914240 original size:24 final size:20
Alignment explanation
Indices: 14914199--14914239 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
14914189 AACAAATATA
14914199 TTATAATAATTTTGATTAAT
1 TTATAATAATTTTGATTAAT
14914219 TTATGAATAATTTTG-TTAAT
1 TTAT-AATAATTTTGATTAAT
14914239 T
1 T
14914240 ATTATCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTATAATAATTTTGATTAAT
Found at i:14914542 original size:20 final size:19
Alignment explanation
Indices: 14914517--14914565 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
14914507 TAATTAATAA
14914517 ATAATAATTTATAAATTATT
1 ATAATAATTTATAAATTA-T
*
14914537 ATAAT-ATATTATTAATTAT
1 ATAATAAT-TTATAAATTAT
14914556 ATATATAATT
1 ATA-ATAATT
14914566 AAATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 6 0.24
20 17 0.68
21 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATAATTTATAAATTAT
Found at i:14914575 original size:16 final size:15
Alignment explanation
Indices: 14914505--14914575 Score: 60
Period size: 16 Copynumber: 4.8 Consensus size: 15
14914495 ATATATTCAT
*
14914505 ATTAATTAATAAATA
1 ATTAATTAATATATA
14914520 A-TAATT--TATA-A
1 ATTAATTAATATATA
* *
14914531 ATTATTATAATATATT
1 ATTAAT-TAATATATA
14914547 ATTAATTATATATATA
1 ATTAATTA-ATATATA
14914563 ATTAAATTAATAT
1 ATT-AATTAATAT
14914576 GTCAATATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
11 2 0.05
12 6 0.14
13 1 0.02
14 5 0.11
15 7 0.16
16 18 0.41
17 5 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATTAATATATA
Found at i:14914604 original size:11 final size:11
Alignment explanation
Indices: 14914588--14914616 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14914578 CAATATTAAT
14914588 TTATAATCAAA
1 TTATAATCAAA
14914599 TTATAATCAAA
1 TTATAATCAAA
14914610 TTATAAT
1 TTATAAT
14914617 TATCATAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (11 bp):
TTATAATCAAA
Found at i:14915679 original size:17 final size:18
Alignment explanation
Indices: 14915647--14915680 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14915637 TTATTATTAA
*
14915647 TAAATATAATTAATAATT
1 TAAATATAAATAATAATT
14915665 TAAAT-TAAATAATAAT
1 TAAATATAAATAATAAT
14915681 AATTTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATAAATAATAATT
Found at i:14915970 original size:15 final size:14
Alignment explanation
Indices: 14915945--14915983 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
14915935 ATTTATATCC
*
14915945 TTAAATTAAAAATT
1 TTAAATTAAAAATG
14915959 TTAAATTTAAAAATG
1 TTAAA-TTAAAAATG
14915974 TTAATATTAA
1 TTAA-ATTAA
14915984 TAATAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 16 0.73
16 1 0.05
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (14 bp):
TTAAATTAAAAATG
Found at i:14915999 original size:17 final size:16
Alignment explanation
Indices: 14915976--14916019 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
14915966 TAAAAATGTT
14915976 AATATTAATAATAG-AA
1 AATATTAATAAT-GTAA
14915992 ATATATTAAT-ATGTAA
1 A-ATATTAATAATGTAA
14916008 AATATTAATAAT
1 AATATTAATAAT
14916020 TAAGATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
17 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (16 bp):
AATATTAATAATGTAA
Found at i:14916017 original size:23 final size:22
Alignment explanation
Indices: 14915974--14916022 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
14915964 TTTAAAAATG
14915974 TTAATATTAATAATAGAAATATA
1 TTAATATTAATAATAGAAATA-A
**
14915997 TTAATATGTAA-AATATTAATAA
1 TTAATAT-TAATAATAGAAATAA
14916019 TTAA
1 TTAA
14916023 GATTGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 15 0.65
24 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (22 bp):
TTAATATTAATAATAGAAATAA
Found at i:14916299 original size:25 final size:24
Alignment explanation
Indices: 14916269--14916335 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
14916259 ACTAAATAAA
14916269 TATTTTATTAATTATTCAAACAAAT
1 TATTTTATTAATTATTCAAA-AAAT
* * *
14916294 TATTTTATCAATAATCCAAAAAAT
1 TATTTTATTAATTATTCAAAAAAT
*
14916318 TAATCATTATTAATTATT
1 T-AT-TTTATTAATTATT
14916336 AATAATGTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
24 5 0.15
25 19 0.58
26 9 0.27
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (24 bp):
TATTTTATTAATTATTCAAAAAAT
Found at i:14916384 original size:21 final size:22
Alignment explanation
Indices: 14916326--14916384 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
14916316 ATTAATCATT
*
14916326 ATTAATTATTAATAATGTATATTT
1 ATTAATTA-TAAT-ATGTATATTC
* *
14916350 ATTTAATAAAAATAT-TATATTC
1 A-TTAATTATAATATGTATATTC
14916372 ATTAATTATAATA
1 ATTAATTATAATA
14916385 AATATTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 10 0.34
22 7 0.24
23 2 0.07
24 4 0.14
25 6 0.21
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
ATTAATTATAATATGTATATTC
Found at i:14916503 original size:12 final size:12
Alignment explanation
Indices: 14916479--14916536 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
14916469 ATTATAAATA
14916479 TTAATAATCATT
1 TTAATAATCATT
14916491 TTAATGAAT-ATT
1 TTAAT-AATCATT
14916503 TTAATAATCAATTT
1 TTAATAATC-A-TT
* *
14916517 ATTAATTATTATT
1 -TTAATAATCATT
14916530 TTAATAA
1 TTAATAA
14916537 ATTAATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 3 0.08
12 19 0.50
13 6 0.16
14 3 0.08
15 7 0.18
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (12 bp):
TTAATAATCATT
Found at i:14916506 original size:24 final size:27
Alignment explanation
Indices: 14916479--14916536 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
14916469 ATTATAAATA
14916479 TTAATAATC-A-TT-TTAATGAATATT
1 TTAATAATCAATTTATTAATGAATATT
* *
14916503 TTAATAATCAATTTATTAATTATTATT
1 TTAATAATCAATTTATTAATGAATATT
14916530 TTAATAA
1 TTAATAA
14916537 ATTAATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 9 0.31
25 1 0.03
26 2 0.07
27 17 0.59
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (27 bp):
TTAATAATCAATTTATTAATGAATATT
Found at i:14916738 original size:22 final size:22
Alignment explanation
Indices: 14916705--14916747 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14916695 CTTTTTGTTA
*
14916705 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
14916727 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
14916748 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:14917193 original size:19 final size:19
Alignment explanation
Indices: 14917171--14917208 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14917161 ATCATTTACA
14917171 ATATAATATATTAAATAAT
1 ATATAATATATTAAATAAT
* *
14917190 ATATATTATATTAATTAAT
1 ATATAATATATTAAATAAT
14917209 TAATTTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATAATATATTAAATAAT
Found at i:14917636 original size:181 final size:182
Alignment explanation
Indices: 14917406--14917745 Score: 465
Period size: 181 Copynumber: 1.9 Consensus size: 182
14917396 ACAGCTTTAG
14917406 TTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATT-TCAAAT
1 TTTTTAAATCTCTTGCTT-ATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTCT-AAAT
* * * * *
14917470 AAGTTTTTATTAACTGAAACAATTGTTTTATGACAAAACAAAATG-TCAAAATAATTTTAAATAG
64 AAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGAT-AAAATAATTTGAAATAG
*
14917534 ATAATTATT-TAAATAGTCATATCTATTTGAAATTGTTCAGTAAACAGATTTATTT
128 ATAATTATTCT-AATAGTCATAACTATTTGAAATTGTTCAGTAAACAGATTTATTT
* * *
14917589 TTTTTAAATCTGTTGCTT-TAATTTTTCG-AATGTTAATAAATTAGTATTATTTTATTCTAAATA
1 TTTTTAAATCTCTTGCTTATAATTTTT-GAAATATTAATAAAGTAGTATTATTTTATTCTAAATA
* * * * *
14917652 AGCTTGTATGAACTGAAATAATTGTTTTATGACTAAGCAAAAGGATAGAATGATTTGAAATAGAT
65 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGATAAAATAATTTGAAATAGAT
*
14917717 AATTATTCTAATAGTCTTAACTATTTGAA
130 AATTATTCTAATAGTCATAACTATTTGAA
14917746 CTAGTTCGGC
Statistics
Matches: 138, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
181 117 0.85
182 4 0.03
183 17 0.12
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (182 bp):
TTTTTAAATCTCTTGCTTATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTCTAAATAA
GCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGATAAAATAATTTGAAATAGATA
ATTATTCTAATAGTCATAACTATTTGAAATTGTTCAGTAAACAGATTTATTT
Found at i:14918419 original size:180 final size:179
Alignment explanation
Indices: 14918072--14918476 Score: 435
Period size: 180 Copynumber: 2.3 Consensus size: 179
14918062 ATTTATTTTG
* *
14918072 AATAAGCTTGTATGAACTAGAACAATTG-TTAAC--T-AAACAAAAGGTCAGAATGATTTTAAAT
1 AATAAGCTTGTATGAAC-AAAACAATTGTTTAACGATAAAACAAAAGGTCAGAATGATTTAAAAT
* * * **
14918133 AGATAATTATTTTAATAGTCTTAACCATTTGAACTGATTTGTAAACAAATTTATTTTTTAAATTT
65 AAATAATTATTTTAATAGTCATAACCATTTGAACTGAGTTCAAAACAAATTTATTTTTTAAATTT
* * *
14918198 CTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCAA
130 CTTACTTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCAA
* * *
14918248 AATAAGCTTGTATGAACAAAACAATTGTTTTACGATAAAAGAAAAGGTCATAATGATTTAAAATA
1 AATAAGCTTGTATGAACAAAACAATTGTTTAACGATAAAACAAAAGGTCAGAATGATTTAAAATA
* * * * * *
14918313 AATAATTA-TTTATATCGTCATAACTATTTTAACTG-GTTCAACAATTAGATTTATTTTTTAATT
66 AATAATTATTTTA-ATAGTCATAACCATTTGAACTGAGTTCAA-AA-CAAATTTATTTTTTAAAT
** * * * *
14918376 TTCTTGGTTATTACGTTTCGAAATATTATTAAATTAATATTATTTTATTCTA
128 TTCTTACTTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCAA
** * * * * *
14918428 AATAAAATAGCATGAACAGAACCAATTGTTTAATGATAAAATAAAAGGT
1 AATAAGCTTGTATGAACA-AAACAATTGTTTAACGATAAAACAAAAGGT
14918477 TAAAACAATT
Statistics
Matches: 188, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
175 9 0.05
176 21 0.11
178 8 0.04
179 52 0.28
180 72 0.38
181 26 0.14
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
AATAAGCTTGTATGAACAAAACAATTGTTTAACGATAAAACAAAAGGTCAGAATGATTTAAAATA
AATAATTATTTTAATAGTCATAACCATTTGAACTGAGTTCAAAACAAATTTATTTTTTAAATTTC
TTACTTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCAA
Found at i:14919517 original size:72 final size:73
Alignment explanation
Indices: 14919399--14919547 Score: 237
Period size: 72 Copynumber: 2.1 Consensus size: 73
14919389 AATTATTTTA
* *
14919399 TGACAATTCAAAAAGGTCATAATGATTTGAAATATCAATTGATTTAGTAAATAGATTTATTTTTT
1 TGACAATTCAAAAAGGTCATAATGATTTGAAATATCAATTGATTTAGTAAACAAATTTATTTTTT
*
14919464 TAAATTTC
66 AAAATTTC
* *
14919472 TGACAATT-TAAAAGGTCATTATGATTTGAAATATCAATTGATTTAGTAAACAAATTTATTTTTT
1 TGACAATTCAAAAAGGTCATAATGATTTGAAATATCAATTGATTTAGTAAACAAATTTATTTTTT
*
14919536 AAAATTTT
66 AAAATTTC
14919544 TGAC
1 TGAC
14919548 TTATTAATTT
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 62 0.89
73 8 0.11
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.43
Consensus pattern (73 bp):
TGACAATTCAAAAAGGTCATAATGATTTGAAATATCAATTGATTTAGTAAACAAATTTATTTTTT
AAAATTTC
Found at i:14920368 original size:24 final size:24
Alignment explanation
Indices: 14920339--14920387 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14920329 AACTTAATTA
14920339 ATATATAATAATAAATATTATATT
1 ATATATAATAATAAATATTATATT
* * * *
14920363 ATATATATTATTATATATTGTATT
1 ATATATAATAATAAATATTATATT
14920387 A
1 A
14920388 AAATTAATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATATATAATAATAAATATTATATT
Found at i:14921043 original size:21 final size:21
Alignment explanation
Indices: 14921019--14921066 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
14921009 ATTAATGATT
*
14921019 ATAATCTATTCATA-TTTAACA
1 ATAATATATT-ATATTTTAACA
*
14921040 ATAAATATATTATATTTTAATA
1 AT-AATATATTATATTTTAACA
14921062 ATAAT
1 ATAAT
14921067 TATAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATATATTATATTTTAACA
Found at i:14921050 original size:22 final size:22
Alignment explanation
Indices: 14921025--14921070 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14921015 GATTATAATC
14921025 TATTCATA-TTTAACAATAAATA
1 TATT-ATATTTTAACAATAAATA
* *
14921047 TATTATATTTTAATAATAATTA
1 TATTATATTTTAACAATAAATA
14921069 TA
1 TA
14921071 ATAAAATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATATTTTAACAATAAATA
Found at i:14921193 original size:29 final size:29
Alignment explanation
Indices: 14921140--14921195 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
14921130 TAATTAATAA
* *
14921140 TAAATTTAATAATAATTGTTATATATTTT
1 TAAATTTAATAATAAATATTATATATTTT
14921169 TAAATTT-ATAATAAATATTATTATATT
1 TAAATTTAATAATAAATATTA-TATATT
14921196 AGCAATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (29 bp):
TAAATTTAATAATAAATATTATATATTTT
Found at i:14922315 original size:5 final size:4
Alignment explanation
Indices: 14922290--14922336 Score: 51
Period size: 4 Copynumber: 11.2 Consensus size: 4
14922280 AATATTTAAT
*
14922290 ATTA ATTA ATTAA ATTG ATTA TATTA ATTA ATATA ATT- ATTA ATTA A
1 ATTA ATTA ATT-A ATTA ATTA -ATTA ATTA AT-TA ATTA ATTA ATTA A
14922337 GTTTAATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 3 0.08
4 22 0.59
5 12 0.32
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:14922315 original size:22 final size:21
Alignment explanation
Indices: 14922288--14922348 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 21
14922278 TTAATATTTA
14922288 ATATTAATTAAT-TAAATTGATT
1 ATATTAATTAATAT-AATT-ATT
14922310 ATATTAATTAATATAATTATT
1 ATATTAATTAATATAATTATT
14922331 A-ATTAAGTTTAATATAAT
1 ATATTAA--TTAATATAAT
14922349 AAAGGATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 26 0.72
23 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATTAATTAATATAATTATT
Found at i:14922514 original size:17 final size:18
Alignment explanation
Indices: 14922492--14922547 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
14922482 TAAATAATTG
14922492 TAATTAATTATTTA-TAA
1 TAATTAATTATTTATTAA
14922509 TAATTAATCTA-TTATTAA
1 TAATTAAT-TATTTATTAA
*
14922527 T-ATTATATTATATATTAA
1 TAATTA-ATTATTTATTAA
14922545 TAA
1 TAA
14922548 AGTAATCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 17 0.52
18 15 0.45
19 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTAATTATTTATTAA
Found at i:14922527 original size:18 final size:17
Alignment explanation
Indices: 14922492--14922547 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
14922482 TAAATAATTG
14922492 TAATTAATTATT-TATAA
1 TAATTAATTATTAT-TAA
14922509 TAATTAATCTATTATTAA
1 TAATTAAT-TATTATTAA
14922527 T-ATTATATTATATATTAA
1 TAATTA-ATTAT-TATTAA
14922545 TAA
1 TAA
14922548 AGTAATCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
17 15 0.44
18 17 0.50
19 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATTAATTATTATTAA
Found at i:14922572 original size:14 final size:16
Alignment explanation
Indices: 14922540--14922578 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
14922530 TATATTATAT
14922540 ATTAATAAAGTAATCTA
1 ATTAA-AAAGTAATCTA
14922557 ATTAAAAAGT-AT-TA
1 ATTAAAAAGTAATCTA
14922571 ATTAAAAA
1 ATTAAAAA
14922579 TGAATTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 2 0.09
16 5 0.23
17 5 0.23
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (16 bp):
ATTAAAAAGTAATCTA
Found at i:14922640 original size:17 final size:17
Alignment explanation
Indices: 14922618--14922674 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
14922608 ATTTATATTT
14922618 TAATTAATTATGAATAA
1 TAATTAATTATGAATAA
* **
14922635 TAATTAAAATATTCATAA
1 TAATT-AATTATGAATAA
*
14922653 TTATCT-ATTATGAATAA
1 TAAT-TAATTATGAATAA
14922670 TAATT
1 TAATT
14922675 TGAAATTAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
16 1 0.03
17 16 0.53
18 12 0.40
19 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TAATTAATTATGAATAA
Found at i:14922708 original size:15 final size:15
Alignment explanation
Indices: 14922690--14922719 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14922680 TTAATCTATA
14922690 TATTATTATAATATT
1 TATTATTATAATATT
14922705 TATTATTATAATATT
1 TATTATTATAATATT
14922720 AAGGATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATAATATT
Found at i:14922785 original size:23 final size:24
Alignment explanation
Indices: 14922739--14922785 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
14922729 CTTATTCTTA
* * *
14922739 TTTAATTAATTTATTAATTTTAAT
1 TTTAATTAATTTAATAAATATAAT
14922763 TTTAATT-ATTTAATAAATATAAT
1 TTTAATTAATTTAATAAATATAAT
14922786 ACAATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTAATTAATTTAATAAATATAAT
Found at i:14922791 original size:14 final size:14
Alignment explanation
Indices: 14922774--14922800 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14922764 TTAATTATTT
14922774 AATAAATATAATAC
1 AATAAATATAATAC
14922788 AATAAATATAATA
1 AATAAATATAATA
14922801 TATAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAATATAATAC
Found at i:14923303 original size:19 final size:20
Alignment explanation
Indices: 14923279--14923322 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14923269 AAACATTAAC
*
14923279 ATTATTTTATTAAAA-ATAA
1 ATTATTTAATTAAAATATAA
*
14923298 ATTA-TTAATTAAAATATTA
1 ATTATTTAATTAAAATATAA
14923317 ATTATT
1 ATTATT
14923323 AATATTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 9 0.43
19 11 0.52
20 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTTAATTAAAATATAA
Found at i:14923323 original size:19 final size:18
Alignment explanation
Indices: 14923287--14923325 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
14923277 ACATTATTTT
14923287 ATTAAAAATAAATTATTA
1 ATTAAAAATAAATTATTA
*
14923305 ATTAAAATATTAATTATTA
1 ATTAAAA-ATAAATTATTA
14923324 AT
1 AT
14923326 ATTTCAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTAAAAATAAATTATTA
Found at i:14923722 original size:30 final size:29
Alignment explanation
Indices: 14923638--14923722 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 29
14923628 GGATAACAAA
* *
14923638 ATTACTAATATTATA-ATAATATTA-ATT
1 ATTAGTAATATTATATATAATATTATTTT
*
14923665 ATTAGTAATATTATATA-AATTACTATTTT
1 ATTAGTAATATTATATATAA-TATTATTTT
* *
14923694 AATTAGTTATATCATATATAATATTATTT
1 -ATTAGTAATATTATATATAATATTATTT
14923723 ATATATTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
27 16 0.34
28 5 0.11
29 2 0.04
30 22 0.47
31 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (29 bp):
ATTAGTAATATTATATATAATATTATTTT
Found at i:14923790 original size:19 final size:18
Alignment explanation
Indices: 14923768--14923810 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
14923758 ATATATTTTA
14923768 TAAT-TAAATTCTAAATAAT
1 TAATATAAATT-T-AATAAT
14923787 TAATAATAAATTTAATAAT
1 TAAT-ATAAATTTAATAAT
14923806 TAATA
1 TAATA
14923811 GTATAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 1 0.05
21 6 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATATAAATTTAATAAT
Found at i:14923805 original size:34 final size:34
Alignment explanation
Indices: 14923744--14923808 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
14923734 ATTAAACATA
* * *
14923744 CTAAATTATTATGAATATATTTTATAATTAAATT
1 CTAAATAATTATGAATAAATTTAATAATTAAATT
14923778 CTAAATAATTAAT-AATAAATTTAATAATTAA
1 CTAAATAATT-ATGAATAAATTTAATAATTAA
14923809 TAGTATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (34 bp):
CTAAATAATTATGAATAAATTTAATAATTAAATT
Found at i:14923939 original size:14 final size:14
Alignment explanation
Indices: 14923920--14923967 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
14923910 TAACAAAAAA
14923920 TAATTAATTCTAAT
1 TAATTAATTCTAAT
**
14923934 TAATTAATTAGAAT
1 TAATTAATTCTAAT
*
14923948 TAATTATAATCT-AT
1 TAATTA-ATTCTAAT
14923962 TAATTA
1 TAATTA
14923968 TAGTACAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 26 0.93
15 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (14 bp):
TAATTAATTCTAAT
Found at i:14924126 original size:11 final size:12
Alignment explanation
Indices: 14924082--14924128 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
14924072 CACTAAACTA
* *
14924082 TTAATATATAAT
1 TTAATAAATTAT
14924094 TTAAATAAATTAT
1 TT-AATAAATTAT
*
14924107 TTAAAAAATTA-
1 TTAATAAATTAT
14924118 TTAATAAATTA
1 TTAATAAATTA
14924129 ATAAACAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 10 0.33
12 10 0.33
13 10 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TTAATAAATTAT
Found at i:14924856 original size:18 final size:19
Alignment explanation
Indices: 14924833--14924879 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
14924823 TAATAGTTAA
14924833 TAAATTAAATATAAT-AGT
1 TAAATTAAATATAATAAGT
14924851 TAAATT--ATATAATAAGT
1 TAAATTAAATATAATAAGT
*
14924868 CAAATTATAATA
1 TAAATTA-AATA
14924880 ATTGACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 7 0.29
17 8 0.33
18 6 0.25
20 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
TAAATTAAATATAATAAGT
Found at i:14924951 original size:17 final size:17
Alignment explanation
Indices: 14924931--14925035 Score: 63
Period size: 13 Copynumber: 6.6 Consensus size: 17
14924921 TTAATTATAT
14924931 AATATTATTATATATTA
1 AATATTATTATATATTA
14924948 AATA-T-TTA-A-ATTA
1 AATATTATTATATATTA
14924961 AATATTTATTATAATATAATA
1 AATA-TTATTAT-ATAT--TA
14924982 AATATTA-TATA-ATT-
1 AATATTATTATATATTA
14924996 -ATATTATTA-AT-TTA
1 AATATTATTATATATTA
* *
14925010 ATTA-TATAATAATATTA
1 AATATTATTAT-ATATTA
14925027 AAT-TTATTA
1 AATATTATTA
14925036 AACAATTGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 32
0.65 0.04 0.31
Matches are distributed among these distances:
13 17 0.25
14 7 0.10
15 7 0.10
16 6 0.09
17 15 0.22
18 2 0.03
19 5 0.07
20 3 0.04
21 6 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATTATTATATATTA
Found at i:14925000 original size:34 final size:34
Alignment explanation
Indices: 14924899--14925004 Score: 112
Period size: 34 Copynumber: 3.1 Consensus size: 34
14924889 TAAATGTTAC
* * *
14924899 TATTATAATATATTTAAT-TTATTTAATTATATAA
1 TATTATAATATATTAAATATTATATAATTATAT-T
*
14924933 TATTATTATATATTAAATATT-TA-AATTAAATATT
1 TATTATAATATATTAAATATTATATAATT--ATATT
*
14924967 TATTATAATATAATAAATATTATATAATTATA-T
1 TATTATAATATATTAAATATTATATAATTATATT
14925000 TATTA
1 TATTA
14925005 ATTTAATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
33 10 0.16
34 39 0.64
35 8 0.13
36 4 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (34 bp):
TATTATAATATATTAAATATTATATAATTATATT
Found at i:14925669 original size:25 final size:25
Alignment explanation
Indices: 14925641--14925690 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14925631 AAGTATTAAA
* *
14925641 ATAAC-TATATGTAAATATAATATAT
1 ATAACATATATATAAAT-TAAGATAT
14925666 ATAACATATATATAAATTAAGATAT
1 ATAACATATATATAAATTAAGATAT
14925691 TTAAATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (25 bp):
ATAACATATATATAAATTAAGATAT
Found at i:14925708 original size:15 final size:14
Alignment explanation
Indices: 14925687--14925732 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
14925677 ATAAATTAAG
14925687 ATATTTAAATAATT
1 ATATTTAAATAATT
14925701 ACTATTT--ATAATT
1 A-TATTTAAATAATT
14925714 ATATTATAAATAATT
1 ATATT-TAAATAATT
14925729 -TATT
1 ATATT
14925733 ATTATTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 4 0.14
13 8 0.29
14 5 0.18
15 11 0.39
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATTTAAATAATT
Found at i:14927182 original size:35 final size:37
Alignment explanation
Indices: 14927099--14927182 Score: 90
Period size: 35 Copynumber: 2.4 Consensus size: 37
14927089 TATGAATTAT
14927099 TAATTAAGTATTATATTAGTAATAGTATATACTATATA
1 TAATTAAGT-TTATATTAGTAATAGTATATACTATATA
*
14927137 TAATT-A-TTTATATTA-TAATTAAGT-TATAGTA-ATA
1 TAATTAAGTTTATATTAGTAA-T-AGTATATACTATATA
14927171 -AATTAAGTTTAT
1 TAATTAAGTTTAT
14927183 CATATAAGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 20 0.49
36 4 0.10
37 1 0.02
38 5 0.12
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.48
Consensus pattern (37 bp):
TAATTAAGTTTATATTAGTAATAGTATATACTATATA
Found at i:14927883 original size:7 final size:7
Alignment explanation
Indices: 14927868--14927910 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
14927858 TATATATATA
*
14927868 AATTGTT
1 AATTATT
14927875 AATTATT
1 AATTATT
14927882 AATTATT
1 AATTATT
14927889 AATTA-T
1 AATTATT
14927895 AATTTAATT
1 AA-TT-ATT
14927904 AATTATT
1 AATTATT
14927911 CAAAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 3 0.09
7 23 0.72
8 3 0.09
9 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (7 bp):
AATTATT
Found at i:14927996 original size:28 final size:28
Alignment explanation
Indices: 14927965--14928026 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
14927955 TTAATTAAGG
*
14927965 ATTATTATTATAATAATATTA-AATAATA
1 ATTATTATAATAATAATATTATAA-AATA
14927993 ATTATTATAATAATAATATTATAAAATA
1 ATTATTATAATAATAATATTATAAAATA
14928021 A-TATTA
1 ATTATTA
14928027 AATCTAAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 5 0.16
28 25 0.78
29 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
ATTATTATAATAATAATATTATAAAATA
Found at i:14928009 original size:31 final size:31
Alignment explanation
Indices: 14927965--14928023 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
14927955 TTAATTAAGG
* * *
14927965 ATTATTATTATAATAATATTAAATAATAATT
1 ATTATAATAATAATAATATAAAATAATAATT
*
14927996 ATTATAATAATAATATTATAAAATAATA
1 ATTATAATAATAATAATATAAAATAATA
14928024 TTAAATCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
ATTATAATAATAATAATATAAAATAATAATT
Found at i:14928367 original size:33 final size:36
Alignment explanation
Indices: 14928299--14928375 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
14928289 TGATAAACTA
* **
14928299 TATTATTATCTTAATTATTATTAATTATAACGTTAT
1 TATTATTATCTTAATTAATAACAATTATAACGTTAT
14928335 TATTATTATCTTAA-TAATAACAATTA-AA-GTTAT
1 TATTATTATCTTAATTAATAACAATTATAACGTTAT
14928368 TAATTATT
1 T-ATTATT
14928376 TTTTAGAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 6 0.16
34 8 0.22
35 9 0.24
36 14 0.38
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (36 bp):
TATTATTATCTTAATTAATAACAATTATAACGTTAT
Found at i:14928399 original size:12 final size:12
Alignment explanation
Indices: 14928384--14928418 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
14928374 TTTTTTAGAA
14928384 TATTAATTAAAC
1 TATTAATTAAAC
14928396 TATTTAATTAAAC
1 TA-TTAATTAAAC
*
14928409 TACTAATTAA
1 TATTAATTAA
14928419 TAATAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (12 bp):
TATTAATTAAAC
Found at i:14929301 original size:25 final size:24
Alignment explanation
Indices: 14929273--14929323 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
14929263 GAATTAGAAT
* *
14929273 AATAATTATCAAAAATAATTATTTA
1 AATAATTA-CAAAAATAAATAATTA
*
14929298 AATAATTACTAAAATAAATAATTA
1 AATAATTACAAAAATAAATAATTA
14929322 AA
1 AA
14929324 ATATTTTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAATTACAAAAATAAATAATTA
Found at i:14929325 original size:25 final size:25
Alignment explanation
Indices: 14929273--14929326 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
14929263 GAATTAGAAT
* *
14929273 AATAATTATCAAAAATAATTATTTA
1 AATAATTATCAAAAATAATAATTAA
*
14929298 AATAATTA-CTAAAATAAATAATTAA
1 AATAATTATCAAAAAT-AATAATTAA
14929323 AATA
1 AATA
14929327 TTTTAAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
AATAATTATCAAAAATAATAATTAA
Found at i:14929955 original size:179 final size:181
Alignment explanation
Indices: 14929615--14929956 Score: 444
Period size: 179 Copynumber: 1.9 Consensus size: 181
14929605 AATAATACAA
*
14929615 ATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTATCAAACAAA
1 ATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAACAAA
* * * * * * *
14929680 TCTAAATCGTTATGACTATCTGAATAATTATTTATTTCAAATTCTTATGACTTTTTTGTTTTGTC
66 TCTAAATAGTCATGACTATCTGAATAATTATCTACTTCAAATTCTTATAACTATTTTGTTTTGTA
*
14929745 ATAAAACATTGTTTCCATCCATATGAGCTTATTCGGATTAAAATAATATTG
131 ATAAAACATTGTTTCAATCCATATGAGCTTATTCGGATTAAAATAATATTG
* *
14929796 ATTTATTAATATTTCA-ACAATTAATAAGTAAAAGATTT-TAAAA-AAATA-AGTTTACCAAACA
1 ATTTATTAATA-TTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATA-TTTACCAAACA
* * * *
14929857 AGTTTAAATAGTCATGACTATTTGAATAATTATCTACTTCAAA-TCATTGTAAC-ATTTTGTTTT
64 AATCTAAATAGTCATGACTATCTGAATAATTATCTACTTCAAATTC-TTATAACTATTTTGTTTT
* * *
14929920 GTAATAAAACAATTGTTTCAATTCATGTTAGCTTATT
128 GTAATAAAAC-ATTGTTTCAATCCATATGAGCTTATT
14929957 TGAACAAAAT
Statistics
Matches: 139, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
178 21 0.15
179 78 0.56
180 4 0.03
181 33 0.24
182 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
ATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAACAAA
TCTAAATAGTCATGACTATCTGAATAATTATCTACTTCAAATTCTTATAACTATTTTGTTTTGTA
ATAAAACATTGTTTCAATCCATATGAGCTTATTCGGATTAAAATAATATTG
Found at i:14930154 original size:35 final size:36
Alignment explanation
Indices: 14930110--14930192 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 36
14930100 ATAATTATTT
14930110 TATAATTTAATAATTTGAATAATAATATTAT-C-TAA
1 TATAATTTAATAATTT-AATAATAATATTATACTTAA
* *
14930145 TATAATTTAAT--TTTATTAATTATATTATACTTAA
1 TATAATTTAATAATTTAATAATAATATTATACTTAA
*
14930179 -ATATTTTAATAATT
1 TATAATTTAATAATT
14930193 ATTATTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
32 12 0.29
33 13 0.32
34 3 0.07
35 13 0.32
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (36 bp):
TATAATTTAATAATTTAATAATAATATTATACTTAA
Found at i:14930208 original size:27 final size:27
Alignment explanation
Indices: 14930100--14930206 Score: 70
Period size: 28 Copynumber: 3.7 Consensus size: 27
14930090 TCTTATTAAT
* * * *
14930100 ATAATTATTTTATAATTTAATAATTTGA
1 ATAATTATATTATAAATAAAT-ATTTTA
* *
14930128 ATAATAATATTATCTAATATAATTTAATTTTA
1 ATAATTATATTA--TAA-ATAA-AT-ATTTTA
* **
14930160 TTAATTATATTATACTTAAATATTTTA
1 ATAATTATATTATAAATAAATATTTTA
14930187 ATAATTATTATTATAAATAA
1 ATAATTA-TATTATAAATAA
14930207 TAAATTATTA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
27 12 0.20
28 21 0.35
29 3 0.05
30 5 0.08
31 2 0.03
32 17 0.28
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
ATAATTATATTATAAATAAATATTTTA
Found at i:14930235 original size:17 final size:18
Alignment explanation
Indices: 14930193--14930241 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
14930183 TTTAATAATT
* *
14930193 ATTATTATA-AATAATAA
1 ATTATTATATATTTATAA
14930210 ATTATTATA-ATTTATAA
1 ATTATTATATATTTATAA
14930227 ATT-TATATATATTTA
1 ATTAT-TATATATTTA
14930242 ATATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 22 0.79
18 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTATATATTTATAA
Found at i:14930241 original size:18 final size:17
Alignment explanation
Indices: 14930193--14930229 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14930183 TTTAATAATT
* *
14930193 ATTATTATAAATAATAA
1 ATTATTATAATTTATAA
14930210 ATTATTATAATTTATAA
1 ATTATTATAATTTATAA
14930227 ATT
1 ATT
14930230 TATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAATTTATAA
Found at i:14930348 original size:22 final size:22
Alignment explanation
Indices: 14930323--14930384 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
14930313 ATACTATAAT
14930323 TTATTTTAA-ATAATTAAGTATA
1 TTATTTTAATATAA-TAAGTATA
14930345 TTATTTTAATATAATAAGTATTAA
1 TTATTTTAATATAATAAGTA-T-A
*
14930369 TTATTATAAT-TAATAA
1 TTATTTTAATATAATAA
14930385 TAATTTATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 15 0.42
23 11 0.31
24 10 0.28
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (22 bp):
TTATTTTAATATAATAAGTATA
Found at i:14930437 original size:14 final size:14
Alignment explanation
Indices: 14930418--14930451 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
14930408 TATATGTCCA
14930418 ATATTAAAATTAAT
1 ATATTAAAATTAAT
*
14930432 ATATTAATATTAAT
1 ATATTAAAATTAAT
14930446 ATATTA
1 ATATTA
14930452 TACTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTAAAATTAAT
Found at i:14930513 original size:15 final size:15
Alignment explanation
Indices: 14930495--14930528 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14930485 TATTAAAATT
14930495 TATTATAAAATAAAA
1 TATTATAAAATAAAA
* *
14930510 TATTATAAGATAAGA
1 TATTATAAAATAAAA
14930525 TATT
1 TATT
14930529 TAATGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
TATTATAAAATAAAA
Found at i:14930553 original size:21 final size:21
Alignment explanation
Indices: 14930528--14930590 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
14930518 GATAAGATAT
*
14930528 TTAATGTTATATTAAATAAAA
1 TTAATGTTATAATAAATAAAA
* * *
14930549 TTAATATAATAATAAATAATA
1 TTAATGTTATAATAAATAAAA
*
14930570 TTATATTGTTATAGTAAATAA
1 TTA-A-TGTTATAATAAATAA
14930591 TAACAATAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 20 0.61
22 1 0.03
23 12 0.36
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
TTAATGTTATAATAAATAAAA
Found at i:14930611 original size:44 final size:43
Alignment explanation
Indices: 14930524--14930612 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 43
14930514 ATAAGATAAG
* * *
14930524 ATATTTAATGTTATATTAAATAAAATTAATATAATAATAAATA
1 ATATTTAATGTTATAGTAAATAAAATCAATAAAATAATAAATA
*
14930567 ATATTATATTGTTATAGTAAATAATAA-CAATAAATATAAT-AATA
1 ATATT-TAATGTTATAGTAAATAA-AATCAATAAA-ATAATAAATA
14930611 AT
1 AT
14930613 TATAATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
43 5 0.13
44 27 0.69
45 7 0.18
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.40
Consensus pattern (43 bp):
ATATTTAATGTTATAGTAAATAAAATCAATAAAATAATAAATA
Found at i:14930637 original size:17 final size:16
Alignment explanation
Indices: 14930615--14930683 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 16
14930605 ATAATAATTA
*
14930615 TAATTATTTTCATAAAT
1 TAATTATATT-ATAAAT
*
14930632 TAATTA-ATTTAATTAAT
1 TAATTATA-TT-ATAAAT
14930649 TAA-TATATTATAAA-
1 TAATTATATTATAAAT
14930663 T-ATTATATTATAAAT
1 TAATTATATTATAAAT
14930678 TAATTA
1 TAATTA
14930684 ACAATATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 1 0.02
14 12 0.28
15 5 0.12
16 8 0.19
17 17 0.40
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTATATTATAAAT
Found at i:14931995 original size:180 final size:181
Alignment explanation
Indices: 14931736--14932106 Score: 440
Period size: 180 Copynumber: 2.1 Consensus size: 181
14931726 ATATATTAAT
* * * * * * * *
14931736 TATTAATTTATTCTAAACAACCTTTTACGAACTAAAACAATTGTTTTATAACCAAATAAAATATT
1 TATTATTTTAATCTAAACAACCTTGTACGAACTAAAACAATTATTTTACAACAAAAGAAAATATC
* * * * ***
14931801 AGAATGATTTGAAATAGATAATTATTC-TAATAGTCTTAACCATTTGAACTGATTCGGTAAACAA
66 AGAACGATTTGAAATAGATAATCATTCAT-ATAGTCTCAACCATTTCAACTGATTCAACAAACAA
* * *
14931865 ATTTACTTTTTAAATCTCTTAGTTATTAATTTTTGAAATATTATTGAATTAG
130 ATTTACTTTTTAAATCTCTTAGTTATTAAGTTTTAAAATATTATTAAATTAG
* * *
14931917 TATTATTTTAATCTAAATAAGCTTGTACGAAC-AAAACAATTATTTTACAACAAAAGAAAATGTC
1 TATTATTTTAATCTAAACAACCTTGTACGAACTAAAACAATTATTTTACAACAAAAGAAAATATC
* * * ** *
14931981 ATAACGATTTGAAATAGATAATCATTCATATAGTCTCAACTATTTCAACTGGTTCAACAATTAGA
66 AGAACGATTTGAAATAGATAATCATTCATATAGTCTCAACCATTTCAACTGATTCAACAAACAAA
* * *
14932046 TTTATTTTTTAATTTTCTTAGTTATTAAGTTTTAAAATATTATTAAATTAG
131 TTTACTTTTTAAATCTCTTAGTTATTAAGTTTTAAAATATTATTAAATTAG
*
14932097 TTTTATTTTA
1 TATTATTTTA
14932107 TTTCGAATAA
Statistics
Matches: 158, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
180 130 0.82
181 28 0.18
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (181 bp):
TATTATTTTAATCTAAACAACCTTGTACGAACTAAAACAATTATTTTACAACAAAAGAAAATATC
AGAACGATTTGAAATAGATAATCATTCATATAGTCTCAACCATTTCAACTGATTCAACAAACAAA
TTTACTTTTTAAATCTCTTAGTTATTAAGTTTTAAAATATTATTAAATTAG
Found at i:14932317 original size:25 final size:25
Alignment explanation
Indices: 14932285--14932342 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
14932275 TTGTATTATT
14932285 TGACATTCATAATGATTTATTTTAA
1 TGACATTCATAATGATTTATTTTAA
14932310 TGACATTCATAATGATTTATTTTAA
1 TGACATTCATAATGATTTATTTTAA
14932335 T-A-ATTCAT
1 TGACATTCAT
14932343 TTTAACCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 6 0.18
24 1 0.03
25 26 0.79
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (25 bp):
TGACATTCATAATGATTTATTTTAA
Found at i:14932447 original size:20 final size:19
Alignment explanation
Indices: 14932418--14932520 Score: 74
Period size: 20 Copynumber: 5.5 Consensus size: 19
14932408 ATATATTTAT
14932418 TAATATTAATAAATTAATA
1 TAATATTAATAAATTAATA
14932437 TAATCATTAATAAATTAA-A
1 TAAT-ATTAATAAATTAATA
14932456 T-AT-TTAAT-AATTAATA
1 TAATATTAATAAATTAATA
* *
14932472 -ATTTTTATATTTAAATTAAT-
1 TAATATTA-A--TAAATTAATA
* *
14932492 TTATATTAGTTAAATTAATA
1 TAATATTA-ATAAATTAATA
*
14932512 TAAAATTAA
1 TAATATTAA
14932521 ATAATACAGT
Statistics
Matches: 65, Mismatches: 9, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
15 6 0.09
16 7 0.11
17 3 0.05
18 3 0.05
19 15 0.23
20 20 0.31
21 11 0.17
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (19 bp):
TAATATTAATAAATTAATA
Found at i:14932485 original size:23 final size:23
Alignment explanation
Indices: 14932417--14932472 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
14932407 TATATATTTA
14932417 TTAAT-ATTAATAAATT-AATA-
1 TTAATAATTAATAAATTAAATAT
*
14932437 -TAATCATTAATAAATTAAATAT
1 TTAATAATTAATAAATTAAATAT
14932459 TTAATAATTAATAA
1 TTAATAATTAATAA
14932473 TTTTTATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 4 0.13
20 11 0.35
21 4 0.13
23 12 0.39
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAATAATTAATAAATTAAATAT
Found at i:14933090 original size:24 final size:26
Alignment explanation
Indices: 14933031--14933092 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
14933021 TTTAATTATC
*
14933031 TATTTTAATTGT-A-ATTATATAACTA
1 TATTTTAATT-TAATATTATATAACAA
*
14933056 TATTTTTATTTAATATTATATAA-AA
1 TATTTTAATTTAATATTATATAACAA
14933081 TA-TTTAATTTAA
1 TATTTTAATTTAA
14933093 CAATTAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 10 0.31
25 13 0.41
26 9 0.28
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (26 bp):
TATTTTAATTTAATATTATATAACAA
Found at i:14933416 original size:24 final size:20
Alignment explanation
Indices: 14933375--14933415 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
14933365 AACAAATATA
14933375 TTATAATAATTTTGATTAAT
1 TTATAATAATTTTGATTAAT
14933395 TTATGAATAATTTTG-TTAAT
1 TTAT-AATAATTTTGATTAAT
14933415 T
1 T
14933416 ATTATCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTATAATAATTTTGATTAAT
Found at i:14934448 original size:177 final size:175
Alignment explanation
Indices: 14934111--14934511 Score: 407
Period size: 177 Copynumber: 2.3 Consensus size: 175
14934101 TATTATTTTT
* *
14934111 GAAATATTAATCAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATAAAAACAATTGTATTA
1 GAAATATTAATAAATTAGTATTATTTTA-TTCCAATAAGCTTGTAT-ATAAAAACAATTGTATTA
* * * * ** * * *
14934176 TGACAAAATAAAATGTCATAATGATTTGAAATAGATAATTATTCAAATGGCCATAATTATTTTAA
64 TGACAAAATAAAAGGTCATAATCATTTAAAATAGACAATTATTCAAATAACAATAAGTATTTGAA
* * * *
14934241 CTGATTTGGTAAACATATTTACTTTTTAAA-TTTCTCATTAATTTAG
129 CTGATTCGGCAAACAGATTTACTTTTTAAACTTTCTCATTAATTTAC
* *
14934287 GAAATATTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTAT-TAACTGAAACAATTAT-T
1 GAAATATTAATAAATTAGTATTATTTTATTCCA-ATAAGCTTGTATATAA---AAACAATTGTAT
* * * *
14934350 ATATGACAAATTAAAAGGTTATAA-CATTTTAAAATAGACAATTGTTCAAATAATAATAAGTATT
62 -TATGACAAAATAAAAGGTCATAATCA-TTTAAAATAGACAATTATTCAAATAACAATAAGTATT
* * *
14934414 TGAACTTG-TTCGGCAAACAGATTTATTTTTTAAATCTTTCTTATTAATTTTC
125 TGAAC-TGATTCGGCAAACAGATTTACTTTTTAAA-CTTTCTCATTAATTTAC
* * * * *
14934466 CAAATGTTAATAAATTAGTATTAATTTATTCTGAATAAACTTGTAT
1 GAAATATTAATAAATTAGTATTATTTTATTC-CAATAAGCTTGTAT
14934512 GAATTGAAAT
Statistics
Matches: 185, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
174 3 0.02
175 4 0.02
176 40 0.22
177 84 0.45
178 2 0.01
179 51 0.28
180 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (175 bp):
GAAATATTAATAAATTAGTATTATTTTATTCCAATAAGCTTGTATATAAAAACAATTGTATTATG
ACAAAATAAAAGGTCATAATCATTTAAAATAGACAATTATTCAAATAACAATAAGTATTTGAACT
GATTCGGCAAACAGATTTACTTTTTAAACTTTCTCATTAATTTAC
Found at i:14934768 original size:13 final size:13
Alignment explanation
Indices: 14934750--14934774 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14934740 AGTAAAACAT
14934750 TAATAATTTTATC
1 TAATAATTTTATC
14934763 TAATAATTTTAT
1 TAATAATTTTAT
14934775 AATAAATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATAATTTTATC
Found at i:14934854 original size:17 final size:18
Alignment explanation
Indices: 14934822--14934855 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14934812 TTATTATTAA
*
14934822 TAAATATAATTAATAATT
1 TAAATATAAATAATAATT
14934840 TAAAT-TAAATAATAAT
1 TAAATATAAATAATAAT
14934856 AATTTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATAAATAATAATT
Found at i:14935169 original size:15 final size:17
Alignment explanation
Indices: 14935151--14935192 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
14935141 TAAAATTGTT
14935151 AATATTAATAATA-G-A
1 AATATTAATAATATGAA
*
14935166 AATATTATTAATATGTAA
1 AATATTAATAATATG-AA
14935184 AATATTAAT
1 AATATTAAT
14935193 TATTAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 12 0.55
16 1 0.05
18 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
AATATTAATAATATGAA
Found at i:14935662 original size:12 final size:12
Alignment explanation
Indices: 14935607--14935694 Score: 54
Period size: 12 Copynumber: 6.9 Consensus size: 12
14935597 TAATAAGGTA
14935607 AATATTTATAATT
1 AATATTT-TAATT
*
14935620 AATATTTAAATT
1 AATATTTTAATT
* *
14935632 ATAAATATTAA-T
1 A-ATATTTTAATT
*
14935644 AATTATTTTAATG
1 AA-TATTTTAATT
14935657 AATATTTTAA-T
1 AATATTTTAATT
14935668 AATCAATTTATTAATT
1 AAT--A-TT-TTAATT
*
14935684 ATTATTTTAAT
1 AATATTTTAAT
14935695 AAATTAATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
11 4 0.07
12 26 0.45
13 18 0.31
14 3 0.05
15 4 0.07
16 3 0.05
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (12 bp):
AATATTTTAATT
Found at i:14935688 original size:39 final size:40
Alignment explanation
Indices: 14935632--14935728 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 40
14935622 TATTTAAATT
* * **
14935632 ATAA-ATATTAATAATTATTTTAATGAA-T-ATTTTAATA
1 ATAATATATTAATTATTATTTTAATAAATTAATAATAATA
*
14935669 ATCAATTTATTAATTATTATTTTAATAAATTAATAATAATA
1 AT-AATATATTAATTATTATTTTAATAAATTAATAATAATA
14935710 ATAATATATT-ATTATTATT
1 ATAATATATTAATTATTATT
14935729 ACTAGTAACA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
37 2 0.04
38 2 0.04
39 29 0.58
40 8 0.16
41 9 0.18
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (40 bp):
ATAATATATTAATTATTATTTTAATAAATTAATAATAATA
Found at i:14935904 original size:22 final size:22
Alignment explanation
Indices: 14935871--14935920 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
14935861 CTTTTAGTTA
*
14935871 TATTCAAATAATACTATAAT-AT
1 TATT-AAATAATACAATAATAAT
14935893 TATTAAATTAATACAATAATAAT
1 TATTAAA-TAATACAATAATAAT
14935916 TATTA
1 TATTA
14935921 TAAATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 3 0.12
22 15 0.60
23 7 0.28
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTAAATAATACAATAATAAT
Found at i:14936359 original size:17 final size:17
Alignment explanation
Indices: 14936339--14936379 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
14936329 TATCATTTAC
14936339 AATATAATATATTAAAT
1 AATATAATATATTAAAT
* *
14936356 AATATATTATATTAATT
1 AATATAATATATTAAAT
14936373 AAT-TAAT
1 AATATAAT
14936380 TTAAATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATAATATATTAAAT
Found at i:14937742 original size:9 final size:10
Alignment explanation
Indices: 14937615--14937742 Score: 52
Period size: 10 Copynumber: 12.7 Consensus size: 10
14937605 ATTAATACTA
14937615 AATAATTAAT
1 AATAATTAAT
14937625 AATAATTAAT
1 AATAATTAAT
*
14937635 AATATTTTAATT
1 AATA-ATTAA-T
14937647 AATAATTTAAT
1 AATAA-TTAAT
* * *
14937658 TACAAATAAT
1 AATAATTAAT
*
14937668 AAT-ATCAAT
1 AATAATTAAT
*
14937677 TAT-ATT-A-
1 AATAATTAAT
*
14937684 AATTATTAAAT
1 AATAATT-AAT
*
14937695 ATAAAATTTAAT
1 A-ATAA-TTAAT
*
14937707 AATAAGCT-AT
1 AATAA-TTAAT
* *
14937717 TATTATTAAT
1 AATAATTAAT
14937727 AATAATTAAT
1 AATAATTAAT
14937737 -ATAATT
1 AATAATT
14937743 CACTATTAAT
Statistics
Matches: 86, Mismatches: 22, Indels: 21
0.67 0.17 0.16
Matches are distributed among these distances:
7 2 0.02
8 4 0.05
9 15 0.17
10 35 0.41
11 13 0.15
12 15 0.17
13 2 0.02
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (10 bp):
AATAATTAAT
Found at i:14937915 original size:24 final size:24
Alignment explanation
Indices: 14937888--14937933 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14937878 CTTTATTTTG
14937888 TTTATCT-AAATGTAATCAAATTAT
1 TTTATCTCAAAT-TAATCAAATTAT
* *
14937912 TTTATTTCAAATTAATTAAATT
1 TTTATCTCAAATTAATCAAATT
14937934 TAAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTATCTCAAATTAATCAAATTAT
Found at i:14938510 original size:44 final size:45
Alignment explanation
Indices: 14938431--14938518 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 45
14938421 ATTTATATTA
* *
14938431 TAAATTTAACTGATTATAATTAAATTAAATAATAATATATAAAAG
1 TAAATTTAAATGAATATAATTAAATTAAATAATAATATATAAAAG
14938476 TAAATTTAAAT-AATATAATTAATAATTAATATAAT-ATATATAA
1 TAAATTTAAATGAATATAATT-A-AATTAA-ATAATAATATATAA
14938519 TATCACAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
44 8 0.21
45 11 0.29
46 14 0.37
47 5 0.13
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (45 bp):
TAAATTTAAATGAATATAATTAAATTAAATAATAATATATAAAAG
Found at i:14938519 original size:21 final size:21
Alignment explanation
Indices: 14938453--14938520 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 21
14938443 ATTATAATTA
*
14938453 AATTAAATAATAATATATAAAAGT
1 AATT-AAT-ATAATATATATAA-T
14938477 AAATTTAA-ATAATATA-ATTAAT
1 -AA-TTAATATAATATATA-TAAT
14938499 AATTAATATAATATATATAAT
1 AATTAATATAATATATATAAT
14938520 A
1 A
14938521 TCACAATACT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
20 4 0.11
21 15 0.39
22 3 0.08
23 10 0.26
25 4 0.11
26 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (21 bp):
AATTAATATAATATATATAAT
Found at i:14938521 original size:14 final size:13
Alignment explanation
Indices: 14938484--14938557 Score: 64
Period size: 14 Copynumber: 5.7 Consensus size: 13
14938474 AGTAAATTTA
14938484 AATAATATAAT-T
1 AATAATATAATAT
14938496 AATAAT-TAATAT
1 AATAATATAATAT
14938508 AATATATATAATAT
1 AATA-ATATAATAT
* *
14938522 CACAATACTAATAT
1 AATAATA-TAATAT
* *
14938536 AACATTTATAATAT
1 AATA-ATATAATAT
14938550 -ATAATATA
1 AATAATATA
14938558 TATTTATTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
11 4 0.08
12 15 0.29
13 7 0.14
14 23 0.45
15 2 0.04
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (13 bp):
AATAATATAATAT
Found at i:14938664 original size:19 final size:20
Alignment explanation
Indices: 14938633--14938672 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
14938623 ATTTTATAAC
14938633 TAAGTTAAATAATATAATTA
1 TAAGTTAAATAATATAATTA
14938653 TAAGTT-AATAATATAATTA
1 TAAGTTAAATAATATAATTA
14938672 T
1 T
14938673 TATTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
TAAGTTAAATAATATAATTA
Found at i:14938679 original size:19 final size:19
Alignment explanation
Indices: 14938640--14938740 Score: 77
Period size: 19 Copynumber: 5.4 Consensus size: 19
14938630 AACTAAGTTA
* *
14938640 AATAATATAATTATAAGTT
1 AATAATATAATTATTATTT
14938659 AATAATATAATTATTATTT
1 AATAATATAATTATTATTT
*
14938678 AA-AA-ATTATTATTATTT
1 AATAATATAATTATTATTT
* *
14938695 -ATACATATAGTTA--ATTA
1 AATA-ATATAATTATTATTT
*
14938712 AATTATATTTAATTATTATTT
1 AA-TA-ATATAATTATTATTT
*
14938733 AATTATAT
1 AATAATAT
14938741 TAAAATATTA
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
16 1 0.02
17 16 0.25
18 4 0.06
19 36 0.57
20 1 0.02
21 5 0.08
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (19 bp):
AATAATATAATTATTATTT
Found at i:14938731 original size:11 final size:10
Alignment explanation
Indices: 14938712--14938741 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
14938702 TAGTTAATTA
14938712 AATTATATTT
1 AATTATATTT
14938722 AATTATTATTT
1 AATTA-TATTT
14938733 AATTATATT
1 AATTATATT
14938742 AAAATATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTATATTT
Found at i:14938736 original size:21 final size:21
Alignment explanation
Indices: 14938712--14938751 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14938702 TAGTTAATTA
* *
14938712 AATTATATTTAATTATTATTT
1 AATTATATTAAAATATTATTT
14938733 AATTATATTAAAATATTAT
1 AATTATATTAAAATATTAT
14938752 ATAACAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTATATTAAAATATTATTT
Found at i:14939728 original size:22 final size:22
Alignment explanation
Indices: 14939701--14939742 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14939691 TAGTAACAAC
14939701 AATTTATTAAT-TAAACAAATTA
1 AATTTA-TAATATAAACAAATTA
*
14939723 AATTTATATTATAAACAAAT
1 AATTTATAATATAAACAAAT
14939743 GCTCTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTTATAATATAAACAAATTA
Found at i:14940244 original size:47 final size:50
Alignment explanation
Indices: 14940192--14940297 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 50
14940182 TATAACATTA
*
14940192 ATAATTACTATTA-ATAATTAAATT-ATTTAACAAAAATAAATTAATAT-T
1 ATAATTAATATTATA-AATTAAATTAATTTAACAAAAATAAATTAATATAT
* * *
14940240 -TAATTAATGTTATAAATTAAATTAAATTTAATAAAAATAGATTAATATAT
1 ATAATTAATATTATAAATTAAATT-AATTTAACAAAAATAAATTAATATAT
14940290 ATAATTAA
1 ATAATTAA
14940298 AATATTTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
47 19 0.39
48 1 0.02
49 21 0.43
50 1 0.02
51 7 0.14
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (50 bp):
ATAATTAATATTATAAATTAAATTAATTTAACAAAAATAAATTAATATAT
Found at i:14940754 original size:181 final size:176
Alignment explanation
Indices: 14940451--14941193 Score: 601
Period size: 177 Copynumber: 4.2 Consensus size: 176
14940441 ATGAATAAGC
* * * * ** *
14940451 TCAAATAGTTATAACTGTTTGAACAATTTTTTATTTCTAATAGTTATGATCTTTTGTTTTGTCA-
1 TCAAATAGTTAT-ACTGTTAGAACAATTATATATTTCAAATTCTTATGACCTTTTGTTTTGTCAT
**
14940515 AAAACAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAATAATACTACTTTATTAATATTTT
65 AAAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTACTTTATTAATATTTT
* *
14940580 GCAAATTAATAGGTAAGAGATTTAAAAAATAAATATGTTTACTAAACAAGT
130 GAAAATT-A-A--TAAGAGATTTAAAAAATAAATATATTTACTAAACAAGT
* *
14940631 TCAAATAGTCATATCTGTTAGAACAATTATATATTTCAAATTCTTATAACCTTTTGTTTTGTCAT
1 TCAAATAGTTATA-CTGTTAGAACAATTATATATTTCAAATTCTTATGACCTTTTGTTTTGTCAT
* ** ** *
14940696 AAAACAATTGTTTCTGTTCATGTAAAATTATTCAAAATAAAATAATTTTGCTTTATTAATATTTT
65 AAAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTACTTTATTAATATTTT
* * *
14940761 GAAAATTAATAAGAGATTTAAAAACTAAATCTATTTACTAAACCAGT
130 GAAAATTAATAAGAGATTTAAAAAATAAATATATTTACTAAACAAGT
* * * * *
14940808 TCAAATAGTTATGACTATTTA-AACAATTATCTATCTCAAA-TCATAATGACC-TTTATTTTGTC
1 TCAAATAGTTAT-ACT-GTTAGAACAATTATATATTTCAAATTC-TTATGACCTTTTGTTTTGTC
** ** * * * * *
14940870 ATAAAACAATTGTTTCCT-TTCATACAAGCTTATTCGGATTAAAATGATACCAATTTAATAATAT
63 ATAAAACAATTGTTT-CTATTCATACAAAATTATTCAAAATAAAATAATACTACTTTATTAATAT
** ** * *
14940934 TTCAAAAATTAATAAGAGATTTAAAAAATAAATA-GCTTAGCCAAACTAGT
127 TTTGAAAATTAATAAGAGATTTAAAAAATAAATATATTTA-CTAAACAAGT
* * * * * *
14940984 TCAAATAGTTAAGACTATCAGAATAATTATCTATTTTTAATCATTC-TAT--CCTTTT-TTTTAG
1 TCAAATAGTT-ATACTGTTAGAACAATTATATA-TTTCAA--ATTCTTATGACCTTTTGTTTT-G
* * ** *** * *
14941045 TTATAAAACAATTATTTC-AGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAAC
61 TCATAAAACAATTGTTTCTA-TTCATACAAAATTATTCAAAATAAAATAATACTACTTTATTAAT
*** * * * *
14941109 ATTCAAAAAATTAAAGCAAGAGATTTAAAAAAATAAATTTGTTTACTAAACAATT
125 ATTTTGAAAATT-AA-TAAGAGATTT-AAAAAATAAATATATTTACTAAACAAGT
* * *
14941164 TTAAATAGATATGACTATTTA-AACAATTAT
1 TCAAATAGTTAT-ACT-GTTAGAACAATTAT
14941194 CTGTTTAAAA
Statistics
Matches: 460, Mismatches: 80, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
175 5 0.01
176 128 0.28
177 144 0.31
178 8 0.02
179 13 0.03
180 93 0.20
181 69 0.15
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (176 bp):
TCAAATAGTTATACTGTTAGAACAATTATATATTTCAAATTCTTATGACCTTTTGTTTTGTCATA
AAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTACTTTATTAATATTTTG
AAAATTAATAAGAGATTTAAAAAATAAATATATTTACTAAACAAGT
Found at i:14940952 original size:176 final size:175
Alignment explanation
Indices: 14940451--14941211 Score: 650
Period size: 176 Copynumber: 4.3 Consensus size: 175
14940441 ATGAATAAGC
* * * * * * *
14940451 TCAAATAGTTATAACTGTTT-GAACAATTTTTTATTTCTAAT-AGTTATGATCTTTTGTTTTGTC
1 TCAAATAGTTATGACTATTTAGAACAATTATCTATTTCAAATCA-TTAT-A-CCTTTATTTTGTC
* *
14940514 A-AAAACAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAATAATACTACTTTATTAATATT
63 ATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATA-T
* *
14940578 TTGCAAATTAA-TAGGTAAGAGATTTAAAAAATAAATATGTTTACTAAACAAGT
127 TT-CAAA--AATTA-ATAAGAGATTTAAAAAATAAAT-TATTTACTAAACAAGT
* * * *
14940631 TCAAATAGTCAT-ATCT-GTTAGAACAATTATATATTTCAAATTC-TTATAACCTTTTGTTTTGT
1 TCAAATAGTTATGA-CTATTTAGAACAATTATCTATTTCAAA-TCATTAT-ACC-TTTATTTTGT
* ** ** ** **
14940693 CATAAAACAATTGTTTCTGTTCATGTAAAATTATTCAAAATAAAATAATTTTGCTTTATTAATAT
62 CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
** * *
14940758 TTTGAAAATTAATAAGAGATTTAAAAACTAAATCTATTTACTAAACCAGT
127 TTCAAAAATTAATAAGAGATTTAAAAAATAAAT-TATTTACTAAACAAGT
* *
14940808 TCAAATAGTTATGACTATTTA-AACAATTATCTATCTCAAATCATAATGACCTTTATTTTGTCAT
1 TCAAATAGTTATGACTATTTAGAACAATTATCTATTTCAAATCATTAT-ACCTTTATTTTGTCAT
** * * * *
14940872 AAAACAATTGTTTCCT-TTCATACAAGCTTATTCGGATTAAAATGATACCAATTTAATAATATTT
65 AAAACAATTGTTT-CTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * *
14940936 CAAAAATTAATAAGAGATTTAAAAAATAAA-TAGCTTAGCCAAACTAGT
129 CAAAAATTAATAAGAGATTTAAAAAATAAATTA-TTTA-CTAAACAAGT
* * * ** * * *
14940984 TCAAATAGTTAAGACTA-TCAGAATAATTATCTATTTTTAATCATTCTATCCTTTTTTTTAGTTA
1 TCAAATAGTTATGACTATTTAGAACAATTATCTATTTCAAATCATTATA-CCTTTATTTT-GTCA
* *** *
14941048 TAAAACAATTATTTC-AGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA-T
64 TAAAACAATTGTTTCTA-TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * *
14941111 TCAAAAAATTAAAGCAAGAGATTTAAAAAAATAAATTTGTTTACTAAACAATT
128 TC-AAAAATT-AA-TAAGAGATTT-AAAAAATAAA-TTATTTACTAAACAAGT
* * * * *
14941164 TTAAATAGATATGACTATTTA-AACAATTATCTGTTTAAAATTATTATA
1 TCAAATAGTTATGACTATTTAGAACAATTATCTATTTCAAATCATTATA
14941212 ATTATAATAT
Statistics
Matches: 474, Mismatches: 82, Indels: 50
0.78 0.14 0.08
Matches are distributed among these distances:
174 2 0.00
175 6 0.01
176 145 0.31
177 136 0.29
178 8 0.02
179 15 0.03
180 102 0.22
181 59 0.12
182 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (175 bp):
TCAAATAGTTATGACTATTTAGAACAATTATCTATTTCAAATCATTATACCTTTATTTTGTCATA
AAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCA
AAAATTAATAAGAGATTTAAAAAATAAATTATTTACTAAACAAGT
Found at i:14941106 original size:353 final size:358
Alignment explanation
Indices: 14940507--14941195 Score: 790
Period size: 353 Copynumber: 1.9 Consensus size: 358
14940497 TGATCTTTTG
* * * *
14940507 TTTTGTCAAAAACAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAATAATACTACTTTATT
1 TTTTGTCAAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACCAATTTAAT
* * *
14940572 AATATTTTGCAAATTAATAGGTAAGAGATTTAAAAAATAAATATGTTTACTAAACAAGTTCAAAT
66 AATATTTTGCAAA-TAATAGATAAGAGATTTAAAAAATAAATATGCTTACCAAACAAGTTCAAAT
* * *
14940637 AGTCATATCTGTTAGAACAATTATATATTTCAAATTCTTATAACCTTTTGTTTTGTCATAAAACA
130 AGTCATAACTATCAGAACAATTATATATTTCAAATTCTTATAACCTTTTGTTTTGTCATAAAACA
* * ** ** ** * ***
14940702 ATTGTTTCTGTTCATGTAAAATTATTCAAAATAAAATAATTTTGCTTTATTAATATTTTGAAAAT
195 ATTATTTCAGTTCATACAAAATTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAAT
* * * *
14940767 T-AA-TAAGAGATTT-AAAAACTAAATCTATTTACTAAACCAGTTCAAATAGTTATGACTATTTA
260 TAAAGCAAGAGATTTAAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGATATGACTATTTA
14940829 AACAATTATCTATCTCAAATCATAATGACCTTTA
325 AACAATTATCTATCTCAAATCATAATGACCTTTA
** * *
14940863 TTTTGTCATAAAACAATTGTTTCCT-TTCATACAAGCTTATTCGGATTAAAATGATACCAATTTA
1 TTTTGTCA-AAAACAATTGTTT-CTATTCATACAAGCTTATTCAAAATAAAATAATACCAATTTA
*
14940927 ATAATA-TTT-CAAA-AATTA-ATAAGAGATTTAAAAAATAAATA-GCTTAGCCAAACTAGTTCA
64 ATAATATTTTGCAAATAA-TAGATAAGAGATTTAAAAAATAAATATGCTTA-CCAAACAAGTTCA
* * * ** * * *
14940987 AATAGTTA-AGACTATCAGAATAATTATCTATTTTTAA-TCATTCTATCCTTTT-TTTTAGTTAT
127 AATAGTCATA-ACTATCAGAACAATTATATATTTCAAATTC-TTATAACCTTTTGTTTT-GTCAT
** ***
14941049 AAAACAATTATTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTCA
189 AAAACAATTATTTCAGTTCATACAAAATTATTCAAAATAAAATAATACTAATTTATTAACATTCA
* * * *
14941114 AAAAATTAAAGCAAGAGATTTAAAAAAATAAATTTGTTTACTAAACAATTTTAAATAGATATGAC
254 AAAAATTAAAGCAAGAGATTTAAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGATATGAC
14941179 TATTTAAACAATTATCT
319 TATTTAAACAATTATCT
14941196 GTTTAAAATT
Statistics
Matches: 275, Mismatches: 48, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
352 11 0.04
353 131 0.48
354 4 0.01
355 13 0.05
356 64 0.23
357 50 0.18
358 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.39
Consensus pattern (358 bp):
TTTTGTCAAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACCAATTTAAT
AATATTTTGCAAATAATAGATAAGAGATTTAAAAAATAAATATGCTTACCAAACAAGTTCAAATA
GTCATAACTATCAGAACAATTATATATTTCAAATTCTTATAACCTTTTGTTTTGTCATAAAACAA
TTATTTCAGTTCATACAAAATTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATT
AAAGCAAGAGATTTAAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGATATGACTATTTAA
ACAATTATCTATCTCAAATCATAATGACCTTTA
Found at i:14941578 original size:21 final size:21
Alignment explanation
Indices: 14941536--14941578 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14941526 AACAAAAGAA
** *
14941536 AATTAACAATTATCTATTGAT
1 AATTAACAATTATAAATAGAT
*
14941557 AATTAATAATTATAAATAGAT
1 AATTAACAATTATAAATAGAT
14941578 A
1 A
14941579 GTTTCAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
AATTAACAATTATAAATAGAT
Found at i:14943070 original size:18 final size:18
Alignment explanation
Indices: 14942989--14943081 Score: 77
Period size: 18 Copynumber: 5.1 Consensus size: 18
14942979 ATATTAAATT
14942989 TATATTATATAGATATAATA
1 TATATTAT-TA-ATATAATA
*
14943009 TATAAATTAATTTATATAA-A
1 TAT--ATT-ATTAATATAATA
*
14943029 -ATATTATTAAT-TTATA
1 TATATTATTAATATAATA
*
14943045 TTAGATTATTAATATAATA
1 -TATATTATTAATATAATA
14943064 TATATTATTAA-ATAATA
1 TATATTATTAATATAATA
14943081 T
1 T
14943082 CAATTATTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 17
0.72 0.07 0.20
Matches are distributed among these distances:
15 2 0.03
16 6 0.10
17 10 0.17
18 20 0.33
19 6 0.10
20 4 0.07
21 6 0.10
22 4 0.07
23 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
TATATTATTAATATAATA
Found at i:14943092 original size:18 final size:17
Alignment explanation
Indices: 14943029--14943095 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 17
14943019 TTTATATAAA
* *
14943029 ATATTATTAATTTATATT
1 ATATTATTAAATAATA-T
*
14943047 AGATTATTAATATAATAT
1 ATATTATTAA-ATAATAT
14943065 ATATTATTAAATAATAT
1 ATATTATTAAATAATAT
14943082 CA-ATTATTTAAATA
1 -ATATTA-TTAAATA
14943096 GATTTAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
17 11 0.26
18 27 0.64
19 4 0.10
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
ATATTATTAAATAATAT
Found at i:14943612 original size:15 final size:15
Alignment explanation
Indices: 14943592--14943621 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14943582 CCTTTTGTAA
14943592 TATTATAATTATAAT
1 TATTATAATTATAAT
14943607 TATTATAATTATAAT
1 TATTATAATTATAAT
14943622 AGATTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATAATTATAAT
Found at i:14943944 original size:24 final size:23
Alignment explanation
Indices: 14943923--14943969 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14943913 ACTATATTTA
14943923 TAAATGAAGATTAAATATTATTAAT
1 TAAAT-AAGATT-AATATTATTAAT
*
14943948 TAAATTAGATTAATATTATTAA
1 TAAATAAGATTAATATTATTAA
14943970 CTATTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
24 5 0.24
25 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (23 bp):
TAAATAAGATTAATATTATTAAT
Done.