Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 74 of 160
Found at i:14944009 original size:23 final size:24
Alignment explanation
Indices: 14943936--14944011 Score: 79
Period size: 23 Copynumber: 3.3 Consensus size: 24
14943926 ATGAAGATTA
* * *
14943936 AATATTATTAATTAAAT-TAGATT
1 AATATTATTAACTAAATATATAAT
*
14943959 AATATTATTAACT-ATTATTATAAT
1 AATATTATTAACTAAATA-TATAAT
14943983 -ATATTATTAA-TAAATATATAAT
1 AATATTATTAACTAAATATATAAT
14944005 AATATTA
1 AATATTA
14944012 ATATATTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
22 9 0.20
23 31 0.70
24 4 0.09
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (24 bp):
AATATTATTAACTAAATATATAAT
Found at i:14944017 original size:31 final size:32
Alignment explanation
Indices: 14943979--14944060 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
14943969 ACTATTATTA
14943979 TAATATATTATTAATAAATATAT-AATAAT-AT
1 TAATATATT-TTAATAAATATATAAATAATAAT
* *
14944010 TAATATATTTTTAATACAT-TATAAATATTAAT
1 TAATATA-TTTTAATAAATATATAAATAATAAT
14944042 TAATA-ATTTTAAT-AATATA
1 TAATATATTTTAATAAATATA
14944061 ATTTTAGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
29 2 0.05
30 12 0.27
31 21 0.48
32 9 0.20
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (32 bp):
TAATATATTTTAATAAATATATAAATAATAAT
Found at i:14944023 original size:11 final size:11
Alignment explanation
Indices: 14943960--14944055 Score: 73
Period size: 11 Copynumber: 9.1 Consensus size: 11
14943950 AATTAGATTA
14943960 ATATTATTAACT
1 ATATTATTAA-T
14943972 ATTATTA-TAAT
1 A-TATTATTAAT
14943983 ATATTATTAAT
1 ATATTATTAAT
*
14943994 A-AATATATAAT
1 ATATTAT-TAAT
14944005 A-A-TATTAAT
1 ATATTATTAAT
*
14944014 ATATTTTTAAT
1 ATATTATTAAT
*
14944025 ACATTA-TAA-
1 ATATTATTAAT
14944034 ATATTAATTAAT
1 ATATT-ATTAAT
14944046 A-ATT-TTAAT
1 ATATTATTAAT
14944055 A
1 A
14944056 ATATAATTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
9 15 0.21
10 17 0.24
11 29 0.41
12 5 0.07
13 5 0.07
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTATTAAT
Found at i:14944024 original size:20 final size:20
Alignment explanation
Indices: 14943987--14944055 Score: 52
Period size: 20 Copynumber: 3.4 Consensus size: 20
14943977 TATAATATAT
* * *
14943987 TATTAATAAATATATAATAA
1 TATTAATATATTTTTAATAA
14944007 TATTAATATATTTTTAATACA
1 TATTAATATATTTTTAATA-A
*
14944028 T-TATAA-ATATTAATTAATAA
1 TAT-TAATATATT-TTTAATAA
*
14944048 TTTTAATA
1 TATTAATA
14944056 ATATAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
20 27 0.68
21 13 0.32
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (20 bp):
TATTAATATATTTTTAATAA
Found at i:14944061 original size:14 final size:14
Alignment explanation
Indices: 14944010--14944066 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
14944000 ATAATAATAT
*
14944010 TAATATATTTTTAA
1 TAATATAATTTTAA
*
14944024 TACATTATAAATATTAA
1 TA-A-TAT-AATTTTAA
*
14944041 TTA-ATAATTTTAA
1 TAATATAATTTTAA
14944054 TAATATAATTTTA
1 TAATATAATTTTA
14944067 GAATTTCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
13 9 0.26
14 13 0.38
15 1 0.03
16 4 0.12
17 7 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATATAATTTTAA
Found at i:14944601 original size:26 final size:26
Alignment explanation
Indices: 14944572--14944702 Score: 75
Period size: 26 Copynumber: 5.2 Consensus size: 26
14944562 ATTAGATTAT
14944572 ATTAATTTATAATAAAATATTTAATA
1 ATTAATTTATAATAAAATATTTAATA
* *
14944598 ATTAAATTTAT-ATATAATTATCTGAAT-
1 ATT-AATTTATAATA-AAATAT-TTAATA
* *
14944625 ATTGATTT-TAATTTAAATATTT--TA
1 ATTAATTTATAA-TAAAATATTTAATA
* *
14944649 ATT-ATTGAT-CTAAAATATTT-ATA
1 ATTAATTTATAATAAAATATTTAATA
14944672 A-T-ATTTAAATAATAATAATATTTAATA
1 ATTAATTT--ATAATAA-AATATTTAATA
14944699 ATTA
1 ATTA
14944703 TTAGTAACTA
Statistics
Matches: 79, Mismatches: 11, Indels: 27
0.68 0.09 0.23
Matches are distributed among these distances:
22 13 0.16
23 7 0.09
24 6 0.08
25 5 0.06
26 23 0.29
27 20 0.25
28 5 0.06
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (26 bp):
ATTAATTTATAATAAAATATTTAATA
Found at i:14944681 original size:17 final size:17
Alignment explanation
Indices: 14944669--14944700 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14944659 TAAAATATTT
14944669 ATAATATTTAAATAATA
1 ATAATATTTAAATAATA
14944686 ATAATATTT-AATAAT
1 ATAATATTTAAATAAT
14944701 TATTAGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAATATTTAAATAATA
Found at i:14945735 original size:13 final size:13
Alignment explanation
Indices: 14945696--14945740 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
14945686 GTATAATTAT
14945696 TTATAATATA-AA
1 TTATAATATATAA
* * *
14945708 TCATATTAAATAA
1 TTATAATATATAA
14945721 TTATAATATATAA
1 TTATAATATATAA
14945734 TTATAAT
1 TTATAAT
14945741 TTATTAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 7 0.27
13 19 0.73
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
TTATAATATATAA
Found at i:14945813 original size:15 final size:15
Alignment explanation
Indices: 14945795--14945831 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
14945785 ATACATATTA
14945795 AATTAATTA-TTTAAT
1 AATTAATTACTTT-AT
14945810 AATTAATTACTTTAT
1 AATTAATTACTTTAT
14945825 AATTAAT
1 AATTAAT
14945832 AATATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTAATTACTTTAT
Found at i:14946134 original size:20 final size:22
Alignment explanation
Indices: 14946109--14946165 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14946099 ATTTATTAAG
14946109 ATTATAATAA-ATATAATTAT-
1 ATTATAATAATATATAATTATA
* *
14946129 ATTATAGTAATTATATATTTATA
1 ATTATAATAA-TATATAATTATA
*
14946152 ATTATAATACTATA
1 ATTATAATAATATA
14946166 AAAATATCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.30
22 13 0.43
23 8 0.27
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
ATTATAATAATATATAATTATA
Found at i:14946141 original size:14 final size:14
Alignment explanation
Indices: 14946109--14946166 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
14946099 ATTTATTAAG
*
14946109 ATTATAATAAATATA
1 ATTAT-ATATATATA
14946124 ATTATAT-TATAGTA
1 ATTATATATATA-TA
*
14946138 ATTATATATTTATA
1 ATTATATATATATA
14946152 ATTATA-ATACTATA
1 ATTATATATA-TATA
14946166 A
1 A
14946167 AAATATCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 5 0.14
14 24 0.65
15 8 0.22
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
ATTATATATATATA
Found at i:14946758 original size:18 final size:19
Alignment explanation
Indices: 14946722--14946764 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
14946712 TATACGAATA
14946722 TAAATATTATTATTCATAT
1 TAAATATTATTATTCATAT
* *
14946741 TAAAT-TTATTTTTTATAT
1 TAAATATTATTATTCATAT
*
14946759 TGAATA
1 TAAATA
14946765 ACTATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
TAAATATTATTATTCATAT
Found at i:14946849 original size:26 final size:26
Alignment explanation
Indices: 14946807--14946872 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
14946797 AATTAATTAA
*
14946807 AATATTTATAAAT-ATAA-TAAAGCAT
1 AATA-TTATTAATAATAAGTAAAGCAT
* *
14946832 ACATATTATTAATAATAAGTTAATCAT
1 A-ATATTATTAATAATAAGTAAAGCAT
14946859 AATATTATTCAATA
1 AATATTATT-AATA
14946873 TTATTTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 8 0.24
26 15 0.44
27 11 0.32
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (26 bp):
AATATTATTAATAATAAGTAAAGCAT
Found at i:14947103 original size:16 final size:17
Alignment explanation
Indices: 14947082--14947117 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
14947072 TAATAAAAAT
14947082 ATTATAATCATTA-ATA
1 ATTATAATCATTACATA
*
14947098 ATTATAATTATTACATA
1 ATTATAATCATTACATA
14947115 ATT
1 ATT
14947118 TTTTAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATAATCATTACATA
Found at i:14947397 original size:21 final size:22
Alignment explanation
Indices: 14947373--14947424 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
14947363 ATTAAATGAT
14947373 AATTATTTTAT-AA-TAATTATA
1 AATTATTTTATCAATTAATT-TA
14947394 AATTAATATTTATCAATTAATTTA
1 AATT-AT-TTTATCAATTAATTTA
14947418 AA-TATTT
1 AATTATTT
14947425 ATATTTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
21 6 0.22
22 4 0.15
23 6 0.22
24 6 0.22
25 5 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTATTTTATCAATTAATTTA
Found at i:14947433 original size:33 final size:35
Alignment explanation
Indices: 14947373--14947438 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
14947363 ATTAAATGAT
*
14947373 AATTATTTTATAATAATTATAAATTAATATTTATC
1 AATTAATTTATAATAATTATAAATTAATATTTATC
* *
14947408 AATTAATTTA-AATATTTAT-ATTTAATATTTA
1 AATTAATTTATAATAATTATAAATTAATATTTA
14947439 ATTATTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 11 0.39
34 8 0.29
35 9 0.32
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (35 bp):
AATTAATTTATAATAATTATAAATTAATATTTATC
Found at i:14948029 original size:14 final size:14
Alignment explanation
Indices: 14948012--14948069 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
14948002 TTATTAAATC
14948012 ATTATAATTATTAT
1 ATTATAATTATTAT
*
14948026 ATTATATATTATATTT
1 ATTATA-ATTAT-TAT
14948042 ATTATAA-TA-TA-
1 ATTATAATTATTAT
**
14948053 ATTATAAAAATTAT
1 ATTATAATTATTAT
14948067 ATT
1 ATT
14948070 TTATAATCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
11 7 0.19
12 2 0.06
13 2 0.06
14 11 0.31
15 6 0.17
16 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTATAATTATTAT
Found at i:14948208 original size:24 final size:22
Alignment explanation
Indices: 14948171--14948222 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
14948161 TACATACATT
*
14948171 TATTAATAATTTATAATTATTAAA
1 TATTAATAAATTATAATTA-T-AA
*
14948195 TATTATTAAATTATAATTATAA
1 TATTAATAAATTATAATTATAA
14948217 TATTAA
1 TATTAA
14948223 ATTGATAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.28
23 1 0.04
24 17 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTAATAAATTATAATTATAA
Found at i:14948338 original size:23 final size:23
Alignment explanation
Indices: 14948274--14948345 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
14948264 AACCTCTTAA
* *
14948274 ATTATAATATTATTAATATAAATT
1 ATTATAAT-TTATCAATTTAAATT
* * **
14948298 ATTTTAGTTTATGTATTTAAATT
1 ATTATAATTTATCAATTTAAATT
14948321 ATTATAATTTATCAATTTAATATT
1 ATTATAATTTATCAATTTAA-ATT
14948345 A
1 A
14948346 AACAATATAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
23 28 0.74
24 10 0.26
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (23 bp):
ATTATAATTTATCAATTTAAATT
Found at i:14948391 original size:34 final size:33
Alignment explanation
Indices: 14948317--14948391 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 33
14948307 TATGTATTTA
14948317 AATT-ATTATAATTTATCAATTTAATATTAAAC
1 AATTAATTATAATTTATCAATTTAATATTAAAC
* *
14948349 AATATAATTATAATTTAAT-AATTTATTATTAAATT
1 AAT-TAATTATAATTT-ATCAATTTAATATTAAA-C
14948384 AATTAATT
1 AATTAATT
14948392 GTAAAATTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
32 3 0.08
33 1 0.03
34 28 0.76
35 5 0.14
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (33 bp):
AATTAATTATAATTTATCAATTTAATATTAAAC
Found at i:14948717 original size:11 final size:10
Alignment explanation
Indices: 14948696--14948893 Score: 52
Period size: 9 Copynumber: 20.1 Consensus size: 10
14948686 ATAATTAATT
14948696 ATTAA-ATTA
1 ATTAATATTA
14948705 ATATAATATTA
1 AT-TAATATTA
*
14948716 ATTAATA-CA
1 ATTAATATTA
14948725 ATTAA-ATATA
1 ATTAATAT-TA
* *
14948735 TTTTGTATATTA
1 -ATT-AATATTA
*
14948747 ATT-ATA-TG
1 ATTAATATTA
14948755 A-TAA-ATT-
1 ATTAATATTA
*
14948762 ATTAATACATTT
1 ATTAAT--ATTA
14948774 ATTAATATTA
1 ATTAATATTA
*
14948784 TATATAATTAATA
1 -AT-TAA-TATTA
*
14948797 ATTCATATTA
1 ATTAATATTA
14948807 ATT--TATTA
1 ATTAATATTA
*
14948815 TATTTATATTATA
1 -ATTAATA-T-TA
* *
14948828 ATAAATATAA
1 ATTAATATTA
14948838 TATTAATA-TA
1 -ATTAATATTA
14948848 ATT-ATATTA
1 ATTAATATTA
14948857 ATT-ATAATTA
1 ATTAAT-ATTA
14948867 ATTAATA--A
1 ATTAATATTA
*
14948875 ATTAA-GTTA
1 ATTAATATTA
14948884 ATTAAT-TTA
1 ATTAATATTA
14948893 A
1 A
14948894 CATTAATAAT
Statistics
Matches: 144, Mismatches: 16, Indels: 58
0.66 0.07 0.27
Matches are distributed among these distances:
7 3 0.02
8 22 0.15
9 34 0.24
10 29 0.20
11 28 0.19
12 20 0.14
13 8 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (10 bp):
ATTAATATTA
Found at i:14948793 original size:31 final size:29
Alignment explanation
Indices: 14948747--14948852 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 29
14948737 TTGTATATTA
14948747 ATTATATGATAAATTATTAATACATTTATTAAT
1 ATTATAT-AT-AATTATTAATACA--TATTAAT
* *
14948780 ATTATATATAATTAATAATTCATATTAATTT
1 ATTATATATAATTATTAATACATATTAA--T
* *
14948811 ATTATATTTATATTA-TAATAAATA-TAAT
1 ATTATATATA-ATTATTAATACATATTAAT
14948839 ATTA-ATATAATTAT
1 ATTATATATAATTAT
14948853 ATTAATTATA
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
26 4 0.06
27 4 0.06
28 5 0.08
29 6 0.10
30 3 0.05
31 28 0.44
32 6 0.10
33 7 0.11
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (29 bp):
ATTATATATAATTATTAATACATATTAAT
Found at i:14948825 original size:42 final size:42
Alignment explanation
Indices: 14948773--14948860 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
14948763 TTAATACATT
*
14948773 TATTAATATTAT-ATATAAT-TAATAATTCATATTAATT-TATTA
1 TATTAATATTATAATA-AATATAAT-ATTAATA-TAATTATATTA
*
14948815 TATTTATATTATAATAAATATAATATTAATATAATTATATTA
1 TATTAATATTATAATAAATATAATATTAATATAATTATATTA
14948857 -ATTA
1 TATTA
14948861 TAATTAATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
41 8 0.20
42 25 0.62
43 7 0.17
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (42 bp):
TATTAATATTATAATAAATATAATATTAATATAATTATATTA
Found at i:14948836 original size:14 final size:17
Alignment explanation
Indices: 14948772--14948856 Score: 56
Period size: 16 Copynumber: 5.2 Consensus size: 17
14948762 ATTAATACAT
*
14948772 TTATTAATATTA-TATA
1 TTATTAATATAATTATA
*
14948788 TAATT-A-ATAATTCATA
1 TTATTAATATAATT-ATA
* *
14948804 TTAATTTATTATATTTATA
1 TT-A-TTAATATAATTATA
14948823 TTA-TAATA-AA-TATA
1 TTATTAATATAATTATA
*
14948837 ATATTAATATAATTATA
1 TTATTAATATAATTATA
14948854 TTA
1 TTA
14948857 ATTATAATTA
Statistics
Matches: 51, Mismatches: 9, Indels: 17
0.66 0.12 0.22
Matches are distributed among these distances:
14 9 0.18
15 8 0.16
16 14 0.27
17 7 0.14
18 3 0.06
19 5 0.10
20 5 0.10
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATTAATATAATTATA
Found at i:14948868 original size:4 final size:4
Alignment explanation
Indices: 14948839--14948912 Score: 55
Period size: 4 Copynumber: 17.8 Consensus size: 4
14948829 TAAATATAAT
*
14948839 ATTA ATATA ATTA TATTA ATT- A-TA ATTA ATTA ATAA ATTA AGTTA ATTA
1 ATTA AT-TA ATTA -ATTA ATTA ATTA ATTA ATTA ATTA ATTA A-TTA ATTA
*
14948888 ATTTAA CATTA A-TA ATTA AGTA ATT
1 A-TT-A -ATTA ATTA ATTA ATTA ATT
14948913 TAGTTAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
2 1 0.02
3 5 0.09
4 32 0.56
5 15 0.26
6 3 0.05
7 1 0.02
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (4 bp):
ATTA
Found at i:14948885 original size:27 final size:28
Alignment explanation
Indices: 14948839--14949028 Score: 106
Period size: 27 Copynumber: 7.0 Consensus size: 28
14948829 TAAATATAAT
14948839 ATTAATATAATTATA-TTAATTATAATTA
1 ATTAATA-AATTATAGTTAATTATAATTA
*
14948867 ATTAATAAATTA-AGTTAATTA-ATTTAA
1 ATTAATAAATTATAGTTAATTATAATT-A
*
14948894 CATTAAT-AATTA-AG-TAATT-TAGTTAA
1 -ATTAATAAATTATAGTTAATTATAATT-A
* *
14948920 AATAATATAATTATA-TT-ATTCATTATT-
1 ATTAATA-AATTATAGTTAATT-ATAATTA
14948947 ATT-A-AAATTAAATAGTTTAATTA-AATT-
1 ATTAATAAATT--ATAG-TTAATTATAATTA
**
14948974 ATTGTTAAATTATA-TTAATATATAATTA
1 ATTAATAAATTATAGTTAAT-TATAATTA
*
14949002 ATT-ATAAATAATAGTTAACTTATAATT
1 ATTAATAAATTATAGTTAA-TTATAATT
14949029 TCTTATATAT
Statistics
Matches: 130, Mismatches: 10, Indels: 44
0.71 0.05 0.24
Matches are distributed among these distances:
24 4 0.03
25 11 0.08
26 20 0.15
27 51 0.39
28 32 0.25
29 12 0.09
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (28 bp):
ATTAATAAATTATAGTTAATTATAATTA
Found at i:14949382 original size:46 final size:45
Alignment explanation
Indices: 14949329--14949426 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 45
14949319 TAATTGATAT
* *
14949329 ATTAATTTTATTATTTTA-TAATTA-TAAGGAATAAATTATATAATA
1 ATTAATTTAATTATTATATTAATTATTAA--AATAAATTATATAATA
*
14949374 ATTTAATTTAATTATTATATTAATTATTAAAATAATTTATATAATA
1 A-TTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
14949420 ATTAATT
1 ATTAATT
14949427 ATTCTTAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
45 7 0.15
46 31 0.66
47 6 0.13
48 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (45 bp):
ATTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
Found at i:14949388 original size:21 final size:21
Alignment explanation
Indices: 14949362--14949426 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
14949352 ATAAGGAATA
14949362 AATTATATAATAATTTAATTT
1 AATTATATAATAATTTAATTT
* **
14949383 AATTATTATATTAATTATTAAAAT
1 AATTA-TATAATAA-T-TTAATTT
14949407 AATTTATATAATAA-TTAATT
1 AA-TTATATAATAATTTAATT
14949427 ATTCTTAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 9 0.26
22 7 0.21
23 1 0.03
24 14 0.41
25 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATATAATAATTTAATTT
Found at i:14949530 original size:24 final size:22
Alignment explanation
Indices: 14949503--14949556 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
14949493 CAATAAATTA
*
14949503 AATAATTATTAATAATATATGTTT
1 AATAATTATTAAT-AT-TATGATT
14949527 AATAATTATTAATATTATGATT
1 AATAATTATTAATATTATGATT
*
14949549 ATTAATTA
1 AATAATTA
14949557 AAATAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 13 0.46
23 2 0.07
24 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
AATAATTATTAATATTATGATT
Found at i:14949534 original size:21 final size:22
Alignment explanation
Indices: 14949505--14949561 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
14949495 ATAAATTAAA
* *
14949505 TAATTATTAATAATA-TATGTT
1 TAATAATTAATAATATTATGAT
*
14949526 TAATAATTATTAATATTATGAT
1 TAATAATTAATAATATTATGAT
*
14949548 TATTAATTAA-AATA
1 TAATAATTAATAATA
14949562 ATTAATATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TAATAATTAATAATATTATGAT
Found at i:14949565 original size:22 final size:23
Alignment explanation
Indices: 14949503--14949565 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
14949493 CAATAAATTA
* *
14949503 AATAATTATTAATAATATATGTTT
1 AATAATTATAAATAAT-TATGATT
*
14949527 AATAATTATTAAT-ATTATGATT
1 AATAATTATAAATAATTATGATT
*
14949549 ATTAATTA-AAATAATTA
1 AATAATTATAAATAATTA
14949566 ATATTGATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 2 0.06
24 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
AATAATTATAAATAATTATGATT
Found at i:14949640 original size:26 final size:27
Alignment explanation
Indices: 14949611--14949669 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
14949601 TATTAAAAAG
14949611 ATTAATAT-ATA-ATAATT-ATTTATATT
1 ATTAATATAATATA-AATTAATTTAT-TT
14949637 ATTAA-ATAATATAAATTAATTTATTT
1 ATTAATATAATATAAATTAATTTATTT
14949663 -TTAATAT
1 ATTAATAT
14949670 TAAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
25 6 0.21
26 16 0.55
27 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTAATATAATATAAATTAATTTATTT
Found at i:14949687 original size:63 final size:66
Alignment explanation
Indices: 14949600--14949726 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 66
14949590 TAATTATTAC
* * * *
14949600 ATATTAAAAAGATTAATATATAATAATTATTTATATTATTA-AATAATATAAATTAATTTATTTT
1 ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATAT-AATTAATTTATTTT
14949664 TA
65 TA
* * *
14949666 ATATT-AAAA-ATAAATAT-TAATAATAATTAAGATTATTATAATATTATAGTTATTTTATTTT
1 ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATATAATTAATTTATTTT
14949727 GGATAAACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
63 30 0.57
64 14 0.26
65 4 0.08
66 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (66 bp):
ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATATAATTAATTTATTTTT
A
Found at i:14949883 original size:17 final size:17
Alignment explanation
Indices: 14949857--14949892 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14949847 AATAGTAATT
* *
14949857 ATTAATATTTATGATAA
1 ATTAAAATTTATAATAA
14949874 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
14949891 AT
1 AT
14949893 AATTAATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Found at i:14950208 original size:29 final size:28
Alignment explanation
Indices: 14950167--14950242 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 28
14950157 TAACAAAGTG
*
14950167 ATTAATATTATTAGGATAATTA-TATAAT
1 ATTAATATTATTA-AATAATTATTATAAT
* *
14950195 ATTATTATATATTAAATATTTATTATAAT
1 ATTAATAT-TATTAAATAATTATTATAAT
* *
14950224 A-TAATAATATTATATAATT
1 ATTAATATTATTAAATAATT
14950243 TAATTAAACA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
27 10 0.26
28 17 0.44
29 12 0.31
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (28 bp):
ATTAATATTATTAAATAATTATTATAAT
Found at i:14950220 original size:21 final size:22
Alignment explanation
Indices: 14950188--14950250 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
14950178 TAGGATAATT
*
14950188 ATATAATATTATTATATATTAA
1 ATATTATATTATTATATATTAA
* *
14950210 ATATT-TATTATAATATAAT-A
1 ATATTATATTATTATATATTAA
*
14950230 ATATTATATAATT-TA-ATTAA
1 ATATTATATTATTATATATTAA
14950250 A
1 A
14950251 CAATTGAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
19 2 0.06
20 10 0.30
21 17 0.52
22 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATATTATATTATTATATATTAA
Found at i:14950239 original size:18 final size:18
Alignment explanation
Indices: 14950188--14950246 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
14950178 TAGGATAATT
*
14950188 ATATAATATTATTATATA
1 ATATAATAATATTATATA
*
14950206 TTA-AAT-AT-TTATTATA
1 ATATAATAATATTA-TATA
14950222 ATATAATAATATTATATA
1 ATATAATAATATTATATA
*
14950240 ATTTAAT
1 ATATAAT
14950247 TAAACAATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 6 0.18
18 14 0.42
19 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATAATAATATTATATA
Found at i:14950381 original size:29 final size:30
Alignment explanation
Indices: 14950328--14950388 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
14950318 AATATTCTAT
14950328 TATATTAAATAATTAATAAGAATTTATTTAA
1 TATATTAAATAA-TAATAAGAATTTATTTAA
* *
14950359 TATATTAAATAA-ATTAAGTATTTATTTAA
1 TATATTAAATAATAATAAGAATTTATTTAA
14950388 T
1 T
14950389 TAACTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 16 0.57
31 12 0.43
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TATATTAAATAATAATAAGAATTTATTTAA
Found at i:14950557 original size:18 final size:18
Alignment explanation
Indices: 14950526--14950560 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14950516 TACTAATCTG
*
14950526 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
14950544 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
14950561 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:14950699 original size:10 final size:10
Alignment explanation
Indices: 14950639--14950707 Score: 53
Period size: 10 Copynumber: 7.4 Consensus size: 10
14950629 AATAATCTAT
14950639 TTAATTAATA
1 TTAATTAATA
14950649 -TAATATAATA
1 TTAAT-TAATA
14950659 TT-A-T-ATA
1 TTAATTAATA
*
14950666 -TAATTTATA
1 TTAATTAATA
*
14950675 CTT-ATAAAT-
1 -TTAATTAATA
14950684 TTAATTAATA
1 TTAATTAATA
14950694 TTAATTAATA
1 TTAATTAATA
14950704 TTAA
1 TTAA
14950708 ATAACAATCA
Statistics
Matches: 47, Mismatches: 3, Indels: 18
0.69 0.04 0.26
Matches are distributed among these distances:
6 1 0.02
7 4 0.09
8 4 0.09
9 12 0.26
10 24 0.51
11 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (10 bp):
TTAATTAATA
Found at i:14951942 original size:29 final size:28
Alignment explanation
Indices: 14951902--14951998 Score: 78
Period size: 29 Copynumber: 3.5 Consensus size: 28
14951892 TATTATTTTG
*
14951902 TATAATTA-TATATTATAATAATTATAA
1 TATAATAATTATATTATAATAATTATAA
* * * *
14951929 TTTAATTGATTATATGT-TAAGAAATATAA
1 TATAA-TAATTATAT-TATAATAATTATAA
14951958 TATAATAATTATATTAATAATAA-T-TAA
1 TATAATAATTATATT-ATAATAATTATAA
*
14951985 TA-ACTAATTATATT
1 TATAATAATTATATT
14951999 TACTTAATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
26 11 0.19
27 10 0.18
28 11 0.19
29 24 0.42
30 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (28 bp):
TATAATAATTATATTATAATAATTATAA
Found at i:14952213 original size:22 final size:21
Alignment explanation
Indices: 14952187--14952237 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14952177 ATTATGGTAC
*
14952187 TAATTATAACTATTATTATAAT-
1 TAATTATAAATA-TATT-TAATA
14952209 TAATTATAAATATATTTAATA
1 TAATTATAAATATATTTAATA
14952230 TAATTATA
1 TAATTATA
14952238 TTATTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 4 0.15
21 12 0.44
22 11 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TAATTATAAATATATTTAATA
Found at i:14952327 original size:15 final size:16
Alignment explanation
Indices: 14952290--14952328 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
14952280 ATTAATTATA
14952290 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
14952307 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
14952322 ATAATAT
1 ATAATAT
14952329 TATCTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 5 0.24
17 4 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:14952327 original size:20 final size:19
Alignment explanation
Indices: 14952272--14952328 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
14952262 GCTGATTTAT
* *
14952272 TATAATTAATTAATTATAA
1 TATATTTAATTAAATATAA
14952291 TA-ATTATATATTAAATATAA
1 TATATT-TA-ATTAAATATAA
14952311 TATATTTAATTATAATAT
1 TATATTTAATTA-AATAT
14952329 TATCTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 8 0.25
20 19 0.59
21 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATATTTAATTAAATATAA
Found at i:14952728 original size:26 final size:27
Alignment explanation
Indices: 14952690--14952740 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
14952680 TACTGGTTTG
14952690 TTTTAAATAATTATA-ATAATAAATTT
1 TTTTAAATAATTATATATAATAAATTT
*
14952716 TTTTGAAAT-ATTATATATATTAAAT
1 TTTT-AAATAATTATATATAATAAAT
14952741 AAATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTAAATAATTATATATAATAAATTT
Found at i:14952772 original size:47 final size:47
Alignment explanation
Indices: 14952693--14952783 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 47
14952683 TGGTTTGTTT
*
14952693 TAAATAATTATAATAATAAATTTTTTTGAAATA-TTATATATATTAAA
1 TAAATAATTATAATAATAAATTTTTATGAAATATTTAT-TATATTAAA
*
14952740 TAAATTATTATTAATAATATAA-TTTTAT-AAATATTTATTATATT
1 TAAATAATTA-TAATAATA-AATTTTTATGAAATATTTATTATATT
14952784 TATGATTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
47 20 0.51
48 17 0.44
49 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (47 bp):
TAAATAATTATAATAATAAATTTTTATGAAATATTTATTATATTAAA
Found at i:14953551 original size:20 final size:21
Alignment explanation
Indices: 14953518--14953566 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
14953508 AATAAATTAT
**
14953518 ATAATTAATTTAATTTAT-TA
1 ATAATTAAAATAATTTATATA
*
14953538 ATTATTAAAATAATTTATATA
1 ATAATTAAAATAATTTATATA
14953559 ATAATTAA
1 ATAATTAA
14953567 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAATTAAAATAATTTATATA
Found at i:14953672 original size:24 final size:22
Alignment explanation
Indices: 14953645--14953698 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
14953635 CAATAAATTA
*
14953645 AATAATTATTAATAATATATGTTT
1 AATAATTATTAAT-AT-TATGATT
14953669 AATAATTATTAATATTATGATT
1 AATAATTATTAATATTATGATT
*
14953691 ATTAATTA
1 AATAATTA
14953699 AAATAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 13 0.46
23 2 0.07
24 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
AATAATTATTAATATTATGATT
Found at i:14953676 original size:21 final size:22
Alignment explanation
Indices: 14953647--14953703 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
14953637 ATAAATTAAA
* *
14953647 TAATTATTAATAATA-TATGTT
1 TAATAATTAATAATATTATGAT
*
14953668 TAATAATTATTAATATTATGAT
1 TAATAATTAATAATATTATGAT
*
14953690 TATTAATTAA-AATA
1 TAATAATTAATAATA
14953704 ATTAATATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TAATAATTAATAATATTATGAT
Found at i:14953707 original size:22 final size:23
Alignment explanation
Indices: 14953645--14953707 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
14953635 CAATAAATTA
* *
14953645 AATAATTATTAATAATATATGTTT
1 AATAATTATAAATAAT-TATGATT
*
14953669 AATAATTATTAAT-ATTATGATT
1 AATAATTATAAATAATTATGATT
*
14953691 ATTAATTA-AAATAATTA
1 AATAATTATAAATAATTA
14953708 ATATTGATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 2 0.06
24 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
AATAATTATAAATAATTATGATT
Found at i:14953781 original size:26 final size:27
Alignment explanation
Indices: 14953752--14953810 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
14953742 TATTAAAAAG
14953752 ATTAATAT-ATA-ATAATT-ATTTATATT
1 ATTAATATAATATA-AATTAATTTAT-TT
14953778 ATTAA-ATAATATAAATTAATTTATTT
1 ATTAATATAATATAAATTAATTTATTT
14953804 -TTAATAT
1 ATTAATAT
14953811 TAAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
25 6 0.21
26 16 0.55
27 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTAATATAATATAAATTAATTTATTT
Found at i:14953788 original size:30 final size:30
Alignment explanation
Indices: 14953725--14953827 Score: 84
Period size: 30 Copynumber: 3.3 Consensus size: 30
14953715 TAGATAAATA
* **
14953725 ATATAATAATTATTACATATTAAAAAGATTAAT
1 ATATAATAATTATT-TATATTATTAA-A-TAAT
14953758 ATATAATAATTATTTATATTATTAAATAAT
1 ATATAATAATTATTTATATTATTAAATAAT
* *
14953788 ATA-AATTAATTTATTTTTAATATTAAA-AAT
1 ATATAA-TAA-TTATTTATATTATTAAATAAT
* *
14953818 AAATATTAAT
1 ATATAATAAT
14953828 AATAATTAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
29 3 0.05
30 18 0.30
31 17 0.28
32 8 0.13
33 14 0.23
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (30 bp):
ATATAATAATTATTTATATTATTAAATAAT
Found at i:14954025 original size:17 final size:17
Alignment explanation
Indices: 14953999--14954034 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14953989 AATAGTAATT
* *
14953999 ATTAATATTTATGATAA
1 ATTAAAATTTATAATAA
14954016 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
14954033 AT
1 AT
14954035 AATTAATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Found at i:14954306 original size:22 final size:22
Alignment explanation
Indices: 14954280--14954321 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14954270 ATTAATATTA
14954280 ATAATTACT-TAATATTATTAGG
1 ATAATTA-TATAATATTATTAGG
14954302 ATAATTATATAATATTATTA
1 ATAATTATATAATATTATTA
14954322 TATATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
ATAATTATATAATATTATTAGG
Found at i:14954340 original size:21 final size:22
Alignment explanation
Indices: 14954308--14954371 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
14954298 TAGGATAATT
*
14954308 ATATAATATTATTATATATTAA
1 ATATTATATTATTATATATTAA
* * *
14954330 ATATT-TATTATAATATAATCA
1 ATATTATATTATTATATATTAA
*
14954351 ATATTATATAATT-TA-ATTAA
1 ATATTATATTATTATATATTAA
14954371 A
1 A
14954372 CAATTGAATA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 4 0.12
21 20 0.61
22 9 0.27
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTATATTATTATATATTAA
Found at i:14954647 original size:18 final size:18
Alignment explanation
Indices: 14954616--14954650 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14954606 TACTAATCTG
*
14954616 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
14954634 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
14954651 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:14955975 original size:14 final size:16
Alignment explanation
Indices: 14955941--14956000 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 16
14955931 ATTATTTTGT
*
14955941 ATAATTATATATTATA
1 ATAATTATATATTAAA
14955957 ATAATTAT-TA-TAAA
1 ATAATTATATATTAAA
*
14955971 ATAATTATA-ATTTAA
1 ATAATTATATATTAAA
* *
14955986 TTGATTATATATTAA
1 ATAATTATATATTAA
14956001 GAAATATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
14 12 0.33
15 12 0.33
16 12 0.33
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATAATTATATATTAAA
Found at i:14956249 original size:22 final size:21
Alignment explanation
Indices: 14956223--14956273 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14956213 ATTATGGTAC
*
14956223 TAATTATAACTATTATTATAAT-
1 TAATTATAAATA-TATT-TAATA
14956245 TAATTATAAATATATTTAATA
1 TAATTATAAATATATTTAATA
14956266 TAATTATA
1 TAATTATA
14956274 TTATTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 4 0.15
21 12 0.44
22 11 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TAATTATAAATATATTTAATA
Found at i:14956363 original size:15 final size:16
Alignment explanation
Indices: 14956326--14956364 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
14956316 ATTAATTATA
14956326 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
14956343 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
14956358 ATAATAT
1 ATAATAT
14956365 TATCTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 5 0.24
17 4 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:14956363 original size:20 final size:19
Alignment explanation
Indices: 14956308--14956364 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
14956298 GCTGATTTAT
* *
14956308 TATAATTAATTAATTATAA
1 TATATTTAATTAAATATAA
14956327 TA-ATTATATATTAAATATAA
1 TATATT-TA-ATTAAATATAA
14956347 TATATTTAATTATAATAT
1 TATATTTAATTA-AATAT
14956365 TATCTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 8 0.25
20 19 0.59
21 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATATTTAATTAAATATAA
Found at i:14956763 original size:26 final size:27
Alignment explanation
Indices: 14956725--14956775 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
14956715 TACTGGTTTG
14956725 TTTTAAATAATTATA-ATAATAAATTT
1 TTTTAAATAATTATATATAATAAATTT
*
14956751 TTTTGAAAT-ATTATATATATTAAAT
1 TTTT-AAATAATTATATATAATAAAT
14956776 AAATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTAAATAATTATATATAATAAATTT
Found at i:14956807 original size:47 final size:47
Alignment explanation
Indices: 14956728--14956818 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 47
14956718 TGGTTTGTTT
*
14956728 TAAATAATTATAATAATAAATTTTTTTGAAATA-TTATATATATTAAA
1 TAAATAATTATAATAATAAATTTTTATGAAATATTTAT-TATATTAAA
*
14956775 TAAATTATTATTAATAATATAA-TTTTAT-AAATATTTATTATATT
1 TAAATAATTA-TAATAATA-AATTTTTATGAAATATTTATTATATT
14956819 TATGATTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
47 20 0.51
48 17 0.44
49 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (47 bp):
TAAATAATTATAATAATAAATTTTTATGAAATATTTATTATATTAAA
Found at i:14957568 original size:46 final size:45
Alignment explanation
Indices: 14957515--14957612 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 45
14957505 TAATTGATAT
* *
14957515 ATTAATTTTATTATTTTA-TAATTA-TAAGGAATAAATTATATAATA
1 ATTAATTTAATTATTATATTAATTATTAA--AATAAATTATATAATA
*
14957560 ATTTAATTTAATTATTATATTAATTATTAAAATAATTTATATAATA
1 A-TTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
14957606 ATTAATT
1 ATTAATT
14957613 ATTCTTAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
45 7 0.15
46 31 0.66
47 6 0.13
48 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (45 bp):
ATTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
Found at i:14957574 original size:21 final size:21
Alignment explanation
Indices: 14957548--14957612 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
14957538 ATAAGGAATA
14957548 AATTATATAATAATTTAATTT
1 AATTATATAATAATTTAATTT
* **
14957569 AATTATTATATTAATTATTAAAAT
1 AATTA-TATAATAA-T-TTAATTT
14957593 AATTTATATAATAA-TTAATT
1 AA-TTATATAATAATTTAATT
14957613 ATTCTTAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 9 0.26
22 7 0.21
23 1 0.03
24 14 0.41
25 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATATAATAATTTAATTT
Found at i:14957716 original size:24 final size:22
Alignment explanation
Indices: 14957689--14957742 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
14957679 CAATAAATTA
*
14957689 AATAATTATTAATAATATATGTTT
1 AATAATTATTAAT-AT-TATGATT
14957713 AATAATTATTAATATTATGATT
1 AATAATTATTAATATTATGATT
*
14957735 ATTAATTA
1 AATAATTA
14957743 AAATAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 13 0.46
23 2 0.07
24 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
AATAATTATTAATATTATGATT
Found at i:14957720 original size:21 final size:22
Alignment explanation
Indices: 14957691--14957747 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
14957681 ATAAATTAAA
* *
14957691 TAATTATTAATAATA-TATGTT
1 TAATAATTAATAATATTATGAT
*
14957712 TAATAATTATTAATATTATGAT
1 TAATAATTAATAATATTATGAT
*
14957734 TATTAATTAA-AATA
1 TAATAATTAATAATA
14957748 ATTAATATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TAATAATTAATAATATTATGAT
Found at i:14957751 original size:22 final size:23
Alignment explanation
Indices: 14957689--14957751 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
14957679 CAATAAATTA
* *
14957689 AATAATTATTAATAATATATGTTT
1 AATAATTATAAATAAT-TATGATT
*
14957713 AATAATTATTAAT-ATTATGATT
1 AATAATTATAAATAATTATGATT
*
14957735 ATTAATTA-AAATAATTA
1 AATAATTATAAATAATTA
14957752 ATATTGATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 2 0.06
24 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
AATAATTATAAATAATTATGATT
Found at i:14957826 original size:26 final size:27
Alignment explanation
Indices: 14957797--14957855 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
14957787 TATTAAAAAG
14957797 ATTAATAT-ATA-ATAATT-ATTTATATT
1 ATTAATATAATATA-AATTAATTTAT-TT
14957823 ATTAA-ATAATATAAATTAATTTATTT
1 ATTAATATAATATAAATTAATTTATTT
14957849 -TTAATAT
1 ATTAATAT
14957856 TAAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
25 6 0.21
26 16 0.55
27 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTAATATAATATAAATTAATTTATTT
Found at i:14957873 original size:63 final size:66
Alignment explanation
Indices: 14957786--14957912 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 66
14957776 TAATTATTAC
* * * *
14957786 ATATTAAAAAGATTAATATATAATAATTATTTATATTATTA-AATAATATAAATTAATTTATTTT
1 ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATAT-AATTAATTTATTTT
14957850 TA
65 TA
* * *
14957852 ATATT-AAAA-ATAAATAT-TAATAATAATTAAGATTATTATAATATTATAGTTATTTTATTTT
1 ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATATAATTAATTTATTTT
14957913 GGATAAACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
63 30 0.57
64 14 0.26
65 4 0.08
66 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (66 bp):
ATATTAAAAAGATAAATATATAATAATAATTAAGATTATTATAATAATATAATTAATTTATTTTT
A
Found at i:14958068 original size:17 final size:17
Alignment explanation
Indices: 14958042--14958077 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14958032 AATAGTAATT
* *
14958042 ATTAATATTTATGATAA
1 ATTAAAATTTATAATAA
14958059 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
14958076 AT
1 AT
14958078 AATTAATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Found at i:14958348 original size:22 final size:22
Alignment explanation
Indices: 14958322--14958363 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14958312 ATTAATATTA
14958322 ATAATTACT-TAATATTATTAGG
1 ATAATTA-TATAATATTATTAGG
14958344 ATAATTATATAATATTATTA
1 ATAATTATATAATATTATTA
14958364 TATATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
ATAATTATATAATATTATTAGG
Found at i:14958401 original size:18 final size:18
Alignment explanation
Indices: 14958354--14958401 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
14958344 ATAATTATAT
*
14958354 AATATTAT-TATATATTA
1 AATATTATATATATAATA
*
14958371 AATATTTATTATATATAATC
1 AATA-TTA-TATATATAATA
14958391 AATATTATATA
1 AATATTATATA
14958402 ATTTAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.15
18 7 0.27
19 4 0.15
20 11 0.42
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
AATATTATATATATAATA
Found at i:14958687 original size:18 final size:18
Alignment explanation
Indices: 14958656--14958690 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14958646 TACTAATCTG
*
14958656 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
14958674 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
14958691 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:14960013 original size:14 final size:16
Alignment explanation
Indices: 14959979--14960038 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 16
14959969 ATTATTTTGT
*
14959979 ATAATTATATATTATA
1 ATAATTATATATTAAA
14959995 ATAATTAT-TA-TAAA
1 ATAATTATATATTAAA
*
14960009 ATAATTATA-ATTTAA
1 ATAATTATATATTAAA
* *
14960024 TTGATTATATATTAA
1 ATAATTATATATTAA
14960039 GAAATATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
14 12 0.33
15 12 0.33
16 12 0.33
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATAATTATATATTAAA
Found at i:14960288 original size:22 final size:21
Alignment explanation
Indices: 14960262--14960312 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14960252 ATTATGGTAC
*
14960262 TAATTATAACTATTATTATAAT-
1 TAATTATAAATA-TATT-TAATA
14960284 TAATTATAAATATATTTAATA
1 TAATTATAAATATATTTAATA
14960305 TAATTATA
1 TAATTATA
14960313 TTATTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 4 0.15
21 12 0.44
22 11 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TAATTATAAATATATTTAATA
Found at i:14960312 original size:15 final size:16
Alignment explanation
Indices: 14960276--14960314 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14960266 TATAACTATT
*
14960276 ATTATAATTAATTATA
1 ATTATATTTAATTATA
*
14960292 AATATATTTAA-TATA
1 ATTATATTTAATTATA
14960307 ATTATATT
1 ATTATATT
14960315 ATTAATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTATATTTAATTATA
Found at i:14960395 original size:15 final size:16
Alignment explanation
Indices: 14960366--14960404 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
14960356 ATTAATTATA
14960366 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
14960383 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
14960398 ATAATAT
1 ATAATAT
14960405 TATCTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 5 0.24
17 4 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:14960403 original size:20 final size:19
Alignment explanation
Indices: 14960348--14960404 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
14960338 GCTGATTTAT
* *
14960348 TATAATTAATTAATTATAA
1 TATATTTAATTAAATATAA
14960367 TA-ATTATATATTAAATATAA
1 TATATT-TA-ATTAAATATAA
14960387 TATATTTAATTATAATAT
1 TATATTTAATTA-AATAT
14960405 TATCTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 8 0.25
20 19 0.59
21 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATATTTAATTAAATATAA
Found at i:14960804 original size:26 final size:27
Alignment explanation
Indices: 14960766--14960816 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
14960756 TACTGGTTTG
14960766 TTTTAAATAATTATA-ATAATAAATTT
1 TTTTAAATAATTATATATAATAAATTT
*
14960792 TTTTGAAAT-ATTATATATATTAAAT
1 TTTT-AAATAATTATATATAATAAAT
14960817 AAATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTAAATAATTATATATAATAAATTT
Found at i:14960848 original size:47 final size:47
Alignment explanation
Indices: 14960769--14960859 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 47
14960759 TGGTTTGTTT
*
14960769 TAAATAATTATAATAATAAATTTTTTTGAAATA-TTATATATATTAAA
1 TAAATAATTATAATAATAAATTTTTATGAAATATTTAT-TATATTAAA
*
14960816 TAAATTATTATTAATAATATAA-TTTTAT-AAATATTTATTATATT
1 TAAATAATTA-TAATAATA-AATTTTTATGAAATATTTATTATATT
14960860 TATGATTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
47 20 0.51
48 17 0.44
49 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (47 bp):
TAAATAATTATAATAATAAATTTTTATGAAATATTTATTATATTAAA
Found at i:14961402 original size:40 final size:41
Alignment explanation
Indices: 14961357--14961454 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
14961347 ATATGAAATA
* *
14961357 ATTATTATTAATTTATAGTATTAAATTACATTATAAT-TTAT
1 ATTATTAGTAATTTATAGTATTAAATTA-ATTAAAATATTAT
** *
14961398 -TTATTTAGT-ATAAATATTATTAAATTAATTAAAATATTAT
1 ATTA-TTAGTAATTTATAGTATTAAATTAATTAAAATATTAT
*
14961438 AATATTAGTAATTTATA
1 ATTATTAGTAATTTATA
14961455 ATTATATTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
39 7 0.16
40 27 0.60
41 11 0.24
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (41 bp):
ATTATTAGTAATTTATAGTATTAAATTAATTAAAATATTAT
Found at i:14961605 original size:46 final size:45
Alignment explanation
Indices: 14961552--14961649 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 45
14961542 TAATTGATAT
* *
14961552 ATTAATTTTATTATTTTA-TAATTA-TAAGGAATAAATTATATAATA
1 ATTAATTTAATTATTATATTAATTATTAA--AATAAATTATATAATA
*
14961597 ATTTAATTTAATTATTATATTAATTATTAAAATAATTTATATAATA
1 A-TTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
14961643 ATTAATT
1 ATTAATT
14961650 ATTCTTAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
45 7 0.15
46 31 0.66
47 6 0.13
48 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (45 bp):
ATTAATTTAATTATTATATTAATTATTAAAATAAATTATATAATA
Found at i:14961611 original size:21 final size:21
Alignment explanation
Indices: 14961585--14961649 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
14961575 ATAAGGAATA
14961585 AATTATATAATAATTTAATTT
1 AATTATATAATAATTTAATTT
* **
14961606 AATTATTATATTAATTATTAAAAT
1 AATTA-TATAATAA-T-TTAATTT
14961630 AATTTATATAATAA-TTAATT
1 AA-TTATATAATAATTTAATT
14961650 ATTCTTAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 9 0.26
22 7 0.21
23 1 0.03
24 14 0.41
25 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATATAATAATTTAATTT
Found at i:14961753 original size:24 final size:22
Alignment explanation
Indices: 14961726--14961779 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
14961716 CAATAAATTA
*
14961726 AATAATTATTAATAATATATGTTT
1 AATAATTATTAAT-AT-TATGATT
14961750 AATAATTATTAATATTATGATT
1 AATAATTATTAATATTATGATT
*
14961772 ATTAATTA
1 AATAATTA
14961780 AAATAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 13 0.46
23 2 0.07
24 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
AATAATTATTAATATTATGATT
Found at i:14961757 original size:21 final size:22
Alignment explanation
Indices: 14961728--14961784 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
14961718 ATAAATTAAA
* *
14961728 TAATTATTAATAATA-TATGTT
1 TAATAATTAATAATATTATGAT
*
14961749 TAATAATTATTAATATTATGAT
1 TAATAATTAATAATATTATGAT
*
14961771 TATTAATTAA-AATA
1 TAATAATTAATAATA
14961785 ATTAATATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TAATAATTAATAATATTATGAT
Found at i:14961788 original size:22 final size:23
Alignment explanation
Indices: 14961726--14961788 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
14961716 CAATAAATTA
* *
14961726 AATAATTATTAATAATATATGTTT
1 AATAATTATAAATAAT-TATGATT
*
14961750 AATAATTATTAAT-ATTATGATT
1 AATAATTATAAATAATTATGATT
*
14961772 ATTAATTA-AAATAATTA
1 AATAATTATAAATAATTA
14961789 ATATTGATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 2 0.06
24 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
AATAATTATAAATAATTATGATT
Found at i:14968240 original size:127 final size:125
Alignment explanation
Indices: 14968014--14968274 Score: 317
Period size: 127 Copynumber: 2.1 Consensus size: 125
14968004 AGCAAATAAG
* * * ** *
14968014 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
*
14968079 GTTCAAAACCAAAGCCTGATGTTGTAAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGCCTGATATTGTAAACTTCAAAATCC-TT-TATAACTTACACTTAACAC
* * *
14968141 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
* * * * * * * *
14968206 GTTCGAAAA-CGAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTACGCTTAACAC
66 GTTC-AAAACCAAAGCCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
*
14968266 TGTGAAAAA
1 TATGAAAAA
14968275 TTAAAAACCA
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
125 24 0.21
126 2 0.02
127 84 0.74
128 4 0.04
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCAAAACCAAAGCCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:14969451 original size:449 final size:450
Alignment explanation
Indices: 14968592--14969616 Score: 1229
Period size: 449 Copynumber: 2.3 Consensus size: 450
14968582 TAGAGCACCT
*
14968592 AAAATTAAAATCGTGCAATAATTGTGCGAATAGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
1 AAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
** *
14968657 GTGATGTTTTAAGCTGC-AAATCC--TTATAAC-TTCGCTTAACACTATG-AAAACTAAACCAAA
66 CCGATGTTTTAAGCTGCAAAATCCTTTTATAACTTTCACTTAACACTATGAAAAACTAAACCAAA
* * * *
14968717 GCAAGTTTTGCCTAGTTTCTTTGTTTGAGCAAGTATAAAACATTGGATTCAAAGATTTTTCAAAT
131 GCAAGTTTTACCAAGTTTCTCTGTTTGAGCAAGTATAAAACATTGGATTCAAAGATTATTCAAAT
* * * *
14968782 TCGTTTCCATTTAAAAACCTGCTAACAGAATGCTTTCTTATTGTAAAGCTTGACTCCCAGTGAAA
196 TCATTTCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTGTAAAGCTTGACTCCCAGTGAAA
* *
14968847 ATCGTTTTCCAAAGCAAAACATAAAATTTCAAAAGAATTAGGCTTCGAGTGCTCCCCCTGTAAAC
261 ATCATTTTCCAAAGCAAAACATAAAATTTCAAAAGAATTAGGCTTCGAGTGCTCCCCCTATAAAC
* * * * *
14968912 TGGTAGAAAGCACATAACAATAATCCAACTTCACAACAATATCCAAATATGAATTTCATTCATAT
326 TGCTAGAAAGCACATAACAATAAACCAAC-TAACAAC-ATATCCAAATATGAATTCCA-TAATAT
* * *
14968977 GTAATTTCCCAAACATCCCTAGAGCACCTAAAAA-ATGT-ATC-TAAGTATGAAACACAACGA
388 GAAATTTCCCAAACATCCCTAGAGCACCTAAAAACATCTAAGCATAAGTATGAAACACAACGA
* *
14969037 AATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGCTCAGAAACAAAGT
1 AAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
* *
14969102 CCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTATGAAAAATTAACACCAA
66 CCGATGTTTTAAGCTGCAAAATCCTTTTATAACTTTCACTTAACACTATGAAAAACTAA-ACCAA
* ** *
14969167 CGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAACATTGGATTC-AAGA-TATTCAAA
130 AGCAAGTTTTACCAAGTTTCTCTGTTTGAGCAAGTATAAAACATTGGATTCAAAGATTATTCAAA
*
14969230 TTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACT-CCAGTG
195 TTCATTTCCA-TTTAAAAA-CCTGCTAAAACAATGCTTTCATATTGTAAAGCTTGACTCCCAGTG
* * *
14969294 AAAATCATTTT-CAAAGGAAAACATAAAGTTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATA
258 AAAATCATTTTCCAAAGCAAAACATAAAATTTCAAAAGAATTAGGCTTCGAGTGCTCCCCCTATA
14969358 AACTGCT-GAAA-CA-ATTTAGCACACATTAAGCACCAA-TAACAAC-T-T-CATAA-AT-AATA
323 AACTGCTAGAAAGCACA--TA--ACA-A-TAA--ACCAACTAACAACATATCCA-AATATGAAT-
*
14969414 TCCA-AATATGAAGATCATTCCTCAAA-ATCCTTAGAGCACCTAAAAACGTATCTAAAAGCAAAT
378 TCCATAATATGAA-AT--TTCC-CAAACATCCCTAGAGCACCTAAAAAC--ATCT--AAGC--AT
*
14969477 AAGTATGAAACACAGCGA
433 AAGTATGAAACACAACGA
* *
14969495 AAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATTGTTCA-AAACCAAAG
1 AAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-CAAAG
* * *
14969559 -CCTGATGTTGTGAA-CTTCAAAATCCTTTGTATAACTTACACTTAACACTATGAAAAAC
65 TCC-GATGTT-TTAAGCTGCAAAATCCTTT-TATAACTTTCACTTAACACTATGAAAAAC
14969617 AACAAAAAAT
Statistics
Matches: 500, Mismatches: 45, Indels: 56
0.83 0.07 0.09
Matches are distributed among these distances:
445 77 0.15
446 13 0.03
447 7 0.01
448 19 0.04
449 112 0.22
450 43 0.09
451 84 0.17
452 12 0.02
454 4 0.01
455 2 0.00
457 5 0.01
458 93 0.19
459 29 0.06
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (450 bp):
AAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
CCGATGTTTTAAGCTGCAAAATCCTTTTATAACTTTCACTTAACACTATGAAAAACTAAACCAAA
GCAAGTTTTACCAAGTTTCTCTGTTTGAGCAAGTATAAAACATTGGATTCAAAGATTATTCAAAT
TCATTTCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTGTAAAGCTTGACTCCCAGTGAAA
ATCATTTTCCAAAGCAAAACATAAAATTTCAAAAGAATTAGGCTTCGAGTGCTCCCCCTATAAAC
TGCTAGAAAGCACATAACAATAAACCAACTAACAACATATCCAAATATGAATTCCATAATATGAA
ATTTCCCAAACATCCCTAGAGCACCTAAAAACATCTAAGCATAAGTATGAAACACAACGA
Found at i:14969710 original size:128 final size:125
Alignment explanation
Indices: 14969480--14969741 Score: 319
Period size: 128 Copynumber: 2.1 Consensus size: 125
14969470 AGCAAATAAG
* * * ** *
14969480 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
*
14969545 GTTCAAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCC-TT-TATAACTTACACTTAACAC
* * *
14969607 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTCTATGCCCAGAAT
* * * * * * *
14969672 TGTTCGAAAA-CGAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTACGCTTAACAC
65 TGTTC-AAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
*
14969733 TGTGAAAAA
1 TATGAAAAA
14969742 TTAAAAACCA
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 24 0.21
127 42 0.37
128 45 0.39
129 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:14971209 original size:128 final size:125
Alignment explanation
Indices: 14970979--14971240 Score: 319
Period size: 128 Copynumber: 2.1 Consensus size: 125
14970969 AGCAAATAAG
* * * ** *
14970979 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
*
14971044 GTTCAAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCC-TT-TATAACTTACACTTAACAC
* * *
14971106 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTCTATGCCCAGAAT
* * * * * * *
14971171 TGTTCGAAAA-CGAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTACGCTTAACAC
65 TGTTC-AAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
*
14971232 TGTGAAAAA
1 TATGAAAAA
14971241 TTAAAAACCA
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 24 0.21
127 42 0.37
128 45 0.39
129 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:14972727 original size:127 final size:127
Alignment explanation
Indices: 14972477--14972739 Score: 323
Period size: 127 Copynumber: 2.1 Consensus size: 127
14972467 AGCAAATAAG
* * * ** *
14972477 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
* *
14972542 GTTCGAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCGAAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
* * *
14972604 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTCTATGCCCAGAAT
* * * * * * *
14972669 TGTTCGAAAAACGAAGTCTGATATTTTGAGCTTCAAAATCC-TT-TCTAAGTTACGCTTAACAC
65 TGTTCG-AAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
*
14972731 TGTGAAAAA
1 TATGAAAAA
14972740 TTAAAACCAA
Statistics
Matches: 115, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
127 64 0.56
128 23 0.20
129 28 0.24
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (127 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCGAAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
Found at i:14974207 original size:128 final size:125
Alignment explanation
Indices: 14973977--14974238 Score: 319
Period size: 128 Copynumber: 2.1 Consensus size: 125
14973967 AGCAAATAAG
* * * ** *
14973977 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
*
14974042 GTTCAAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCC-TT-TATAACTTACACTTAACAC
* * *
14974104 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTCTATGCCCAGAAT
* * * * * * *
14974169 TGTTCGAAAA-CGAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTACGCTTAACAC
65 TGTTC-AAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
*
14974230 TGTGAAAAA
1 TATGAAAAA
14974239 TTAAAAACCA
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 24 0.21
127 42 0.37
128 45 0.39
129 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCAAAACCAAAGCCTGATATTGTGAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:14976740 original size:914 final size:890
Alignment explanation
Indices: 14975013--14976977 Score: 2389
Period size: 894 Copynumber: 2.2 Consensus size: 890
14975003 AAAATGTATC
14975013 TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAG
1 TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAG
* * * * * *
14975078 AATTGCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACAC
66 AATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTCTATAACTTACACTTAACAC
* * *
14975143 TATGAAAAATTAACACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAACATTG
131 TATGAAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGAGAGTTCAAAACATTG
14975208 GATTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTA
196 GATTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTA
*
14975273 AAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGCTTCG
261 AAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCA-TA------G
*
14975338 AGTGCTCCCCCTATAAACTGCTGAAACAATTTAGCACACATTAAGCACCAATAACAACTTCATAA
319 A--G--CCCCCTATAAACTGC-GAAACAA--TAG-ACACATTAAGCA-CAATAACAACTTCACAA
* *
14975403 ATAATATCCAAATATGAAGATCATTCCTCAAAATCCTTAGAGCACCTAAAAACGTATCTAAAAGC
375 ATAATATCCAAATATGAACATCATTCCTCAAAATCCCTAGAGCACCTAAAAAC--ATCT--AAGC
*
14975468 AAATAAGTATGAAACACAACGAAATATTAAAATAGTGCAATAATTGTGCGAATGTTTTTATGCTC
436 --ATAAGTATGAAACACAACGAAATATTAAAATAGTGCAATAATTGTGCGAATGTTTTTATGCCC
** * * * *
14975533 AGAATTTTTCAGAAGCAAAGTCTGATGTTTTTAGCTGCAAAATCTTTTATAACTTTCGCTTAACA
499 AGAATTGCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCTTTTATAACTTTCACTTAACA
* * *
14975598 GCATGAAAAACTAAAAGAAATGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATT
564 GCATGAAAAACTAAAACAAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAACATT
*
14975663 GGATTCAAGATATTCAAATCTATTTCAATTTAAAAACCAGCCAAAACAATGTTTTCAAATTTTAA
629 GGATTCAAGATATTCAAATCTATTTCAATTTAAAAACCAGCCAAAACAATGCTTTCAAATTTTAA
14975728 AGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTACGCTTCGA
694 AGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTACGCTTCGA
*
14975793 GTGCTCCACCTATAAACTGCTAAAACGATTTAGCACGCAATTATTCACACTAAGCACCAATAACA
759 GTGCTCCACCTATAAACTGCTAAAACAATTT---A-GC----A--CACACTAAGCACCAATAACA
* *
14975858 ACTTCATAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAACTCCTTAGAGCGCC
814 ACTTCATAAATAATATCCAAATATGAAGATCATTC--AT-CAA------AA-TCCTTAGAGCACC
**
14975923 TAAATTCGCATCTAAAAGCAAA
869 TAAAAACGCATCTAAAAGCAAA
*
14975945 TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAA
1 TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAG
* *
14976010 AATCGTTCAGAAAGAAAAGTCTGATGTTTTAAGCTCCAAAATCC-TCTATAACTTACACTTAACA
66 AATTGTTCAGAAA-CAAAGTCTGATGTTTTAAGCTCCAAAATCCTTCTATAACTTACACTTAACA
* * * * * **
14976074 CTATGAAAAATTAAAACCAATGGAGGTTTTTTA-TATGTTTCT-TCGTTTGAGCAG-GTTCGGAA
130 CTATGAAAAATTAAAACCAACGCAAG--TTTTACCAAGTTTCTCT-GTTTGAG-AGAGTTCAAAA
* * * *
14976136 CATTGGATTCAGGATTTTCAAATTCGTTTCCA-TTTAAAAA-CCTTCTAAAACAATGCTTTCCTG
191 CATTGGATTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTT-C--
* * * ** *
14976199 TTTTTTTAAAGCTTTACTCTGGTGAAAATCGTTTTC-AAGGCAAAACATAAAATTTCAAAAGC-T
253 ATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGG-AAAACATAAAATTTCAAAAGCAT
* * *
14976262 A-A-CCCCCTATAAACTG-G-TAGAA-AG-CACA-T-A--ACAATATCCAACTTCACAAATAATA
317 AGAGCCCCCTATAAACTGCGAAACAATAGACACATTAAGCACAATA-ACAACTTCACAAATAATA
*
14976317 TCCAAATATGAATTTCATTCATATGTAATTCC-CAAACATCCCTAGAGCACCTAAAAA-ATGT-A
381 TCCAAATATGAA---CA-TC-------ATTCCTCAAA-ATCCCTAGAGCACCTAAAAACATCTAA
* *
14976379 TC-TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCC
434 GCATAAGTATGAAACACAACGAAATATTAAAATAGTGCAATAATTGTGCGAAT-GTTTTTATGCC
*
14976443 CAGAATTGCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAA
498 CAGAATTGCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAAT-CTTTTATAACTTTCACTTAA
* * *
14976508 CA-CTATGAAAAATTAACACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAAC
562 CAGC-ATGAAAAACTAAAACAAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAAC
* * * *
14976572 ATTGGATTCAAGATATTCAAAT-TCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATA
626 ATTGGATTCAAGATATTCAAATCT-ATTT-CAATTTAAAAA-CCAGCCAAAACAATGCTTTCAAA
* *
14976636 TTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGG
688 TTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTACG
* * *
14976701 CTTCGAGTGCTCCCCCTATAAACTGCTGAAACAATTTAGCACACATTAAGCACCAATAACAACTT
753 CTTCGAGTGCTCCACCTATAAACTGCTAAAACAATTTAGCACACACTAAGCACCAATAACAACTT
* *
14976766 CATAAATAATATCCAAATATGAAGATCATTCCTCAAAATCCTTAGAGCACCTAAAAACGTATCTA
818 CATAAATAATATCCAAATATGAAGATCATTCATCAAAATCCTTAGAGCACCTAAAAACGCATCTA
14976831 AAAGCAAA
883 AAAGCAAA
* * * *
14976839 TAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAG
1 TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAG
* * * * *
14976904 AATTGTTCA-AACCAAAGCCTGATGTTGTGAA-CTTCAAAATCCTTTGTATAACTTACACTTAAC
66 AATTGTTCAGAAACAAAGTCTGATGTT-TTAAGCTCCAAAATCC-TTCTATAACTTACACTTAAC
14976967 ACTATGAAAAA
129 ACTATGAAAAA
14976978 CAACAAAAAA
Statistics
Matches: 920, Mismatches: 82, Indels: 100
0.83 0.07 0.09
Matches are distributed among these distances:
892 22 0.02
893 5 0.01
894 128 0.14
895 2 0.00
901 2 0.00
902 1 0.00
904 54 0.06
906 1 0.00
907 5 0.01
908 29 0.03
910 52 0.06
911 54 0.06
912 106 0.12
913 12 0.01
914 118 0.13
916 3 0.00
917 3 0.00
918 5 0.01
919 24 0.03
920 14 0.02
925 1 0.00
931 18 0.02
932 126 0.14
933 79 0.09
934 56 0.06
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (890 bp):
TAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAG
AATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTCTATAACTTACACTTAACAC
TATGAAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGAGAGTTCAAAACATTG
GATTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTA
AAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATAGAGCCCCC
TATAAACTGCGAAACAATAGACACATTAAGCACAATAACAACTTCACAAATAATATCCAAATATG
AACATCATTCCTCAAAATCCCTAGAGCACCTAAAAACATCTAAGCATAAGTATGAAACACAACGA
AATATTAAAATAGTGCAATAATTGTGCGAATGTTTTTATGCCCAGAATTGCTCAGAAACAAAGTC
CGATGTTTTAAGCTGCAAAATCTTTTATAACTTTCACTTAACAGCATGAAAAACTAAAACAAACG
CAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATCTA
TTTCAATTTAAAAACCAGCCAAAACAATGCTTTCAAATTTTAAAGCTTGACTCCAGTGAAAATCA
TTTTCAAAGGAAAACATAAAATTTCAAAAGCATTACGCTTCGAGTGCTCCACCTATAAACTGCTA
AAACAATTTAGCACACACTAAGCACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCA
TTCATCAAAATCCTTAGAGCACCTAAAAACGCATCTAAAAGCAAA
Found at i:14977091 original size:126 final size:126
Alignment explanation
Indices: 14976843--14977103 Score: 319
Period size: 126 Copynumber: 2.1 Consensus size: 126
14976833 AGCAAATAAG
* * * ** *
14976843 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
* *
14976908 GTTCAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
66 GTTCAAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
* * *
14976969 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTCTATGCCCAGAAT
* * * * * * *
14977034 TGTTCGAAAACGAAGTCTGATATTTTGAGCTTCAAAATCC-TT-TCTAAGTTACGCTTAACAC
65 TGTTC-AAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
*
14977095 TGTGAAAAA
1 TATGAAAAA
14977104 TTAAAAACCA
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
126 64 0.56
127 22 0.19
128 28 0.25
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (126 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTCTATGCCCAGAATT
GTTCAAAACAAAGCCTGATATTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
Found at i:14977548 original size:590 final size:579
Alignment explanation
Indices: 14976385--14977567 Score: 1375
Period size: 585 Copynumber: 2.0 Consensus size: 579
14976375 TGTATCTAAG
* * * **
14976385 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
* * *
14976450 GCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTATG
66 GCTCAGAAACAAAGTCCGATATTTTAAGCTGCAAAATCCTTTTCTAACTTACACTTAACACTATG
* ** *
14976515 AAAAATTAACACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGTGAGTTTAAAACATTGGATT
131 AAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGCAAGTTTAAAACATTCGATT
*
14976580 CAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTAAAGC
196 CAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGC
* * * * * * *
14976645 TTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGCTTCGAGTG
261 TGGACTACAGAGAAAATCATATTCAAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG-A
* * * *
14976710 CTCCCCCTATAAACTGCTGAAACAATTTAGCACACATTAAGCACCAATAACAACTTCATAAATAA
325 CT--CCCTATAAACAGCTGAAACAATCTA-CACACATCAAGCACCAATAACAACTTCACAAATAA
* * *
14976775 TATCCAAATATGAAGATCATTCCTCAAAATCCTTAGAGCACCTAAAAACGTATCTAAAAGCAAAT
387 TATCCAAATATCAAGATCATTCATCAAAATCCTTAGAGCACCTAAAAACGCATCTAAAAGCAAAT
* * *
14976840 AAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTCTATGCCCAGA
452 AAGTATGAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTCTATGCCCAAA
* * * *
14976905 ATTGTTCAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCTTTGTATAACTTACACTTAACAC
517 ATCGTTCAAACAAAAGCCTGATGTTGTGAACTCCAAAATCC-TTCTATAACTTACACTTAACAC
* *
14976969 TATGAAAAACAACAAAAAATTAAAATCACGCGAA-AATTGTTCGAATGTTTTTTTATGCCCAGAA
1 TATGAAAAACAACAAAAAATTAAAATCACGC-AATAATTGTGCGAATG-GTTTTTATGCCCAGAA
* * * * * * *
14977033 TTGTTC-GAAAACGAAGTCTGATATTTTGAGCTTCAAAATCC-TTTCTAAGTTACGCTTAACACT
64 TTGCTCAG-AAACAAAGTCCGATATTTTAAGCTGCAAAATCCTTTTCTAACTTACACTTAACACT
* * * **
14977096 GTGAAAAATTAAAAACCAATGCTAGTTTTACCTTGTTTCAT-TGTTTGAGCAAGTTTAAAACA-T
128 ATGAAAAATT-AAAACCAACGCAAGTTTTACCAAGTTTC-TCTGTTTGAGCAAGTTTAAAACATT
* * * *
14977159 CGATTCAATATATTCAAATTCATTTCCA-TTTAAAAAACCTTCTAAAACAATTCTTTCATGTTTT
191 CGATTCAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGCTAAAACAATGCTTTCAT-ATTT
* * * *
14977223 TAAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTGGGCT
255 T-AAAGCTGGACTACAGAGAAAATCATATTCAAAGAAAAACATAAAATTTCAAAAGCATTAGGCT
** * * * *
14977288 TTTA-ACT-GCTA-AAACAAGTTAGCAGACAA-CTA-ATCACATCAAGCGCCAATAACAACTTCA
319 TCGAGACTCCCTATAAAC-AGCT-G-AAACAATCTACA-CACATCAAGCACCAATAACAACTTCA
* * **
14977348 CAAATAATATCCAAATATCAAGATCATTCATATGTAATTCCTCAACTCCTTAGAGCGCCTAAATT
380 CAAATAATATCCAAATATCAAGATCATTC--AT-CAA------AA-TCCTTAGAGCACCTAAAAA
*
14977413 CGCATCTAAAAGCAAATAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAA
435 CGCATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAA
* * * *
14977478 TGGTTTTTATGCCCAAAATCGTTCAGAAAGAAAAGTCTGATGTT-TTAAGCTCCAAAATCC-TCT
500 TGGTTTCTATGCCCAAAATCGTTC--AAACAAAAGCCTGATGTTGTGAA-CTCCAAAATCCTTCT
14977541 ATAACTTACACTTAACAC
562 ATAACTTACACTTAACAC
14977559 TATGAAAAA
1 TATGAAAAA
14977568 TTAAAACCAA
Statistics
Matches: 504, Mismatches: 71, Indels: 42
0.82 0.12 0.07
Matches are distributed among these distances:
579 5 0.01
580 56 0.11
581 3 0.01
582 6 0.01
583 32 0.06
584 97 0.19
585 147 0.29
586 1 0.00
589 2 0.00
590 127 0.25
591 3 0.01
592 25 0.05
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (579 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
GCTCAGAAACAAAGTCCGATATTTTAAGCTGCAAAATCCTTTTCTAACTTACACTTAACACTATG
AAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTCTGTTTGAGCAAGTTTAAAACATTCGATT
CAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGC
TGGACTACAGAGAAAATCATATTCAAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGAC
TCCCTATAAACAGCTGAAACAATCTACACACATCAAGCACCAATAACAACTTCACAAATAATATC
CAAATATCAAGATCATTCATCAAAATCCTTAGAGCACCTAAAAACGCATCTAAAAGCAAATAAGT
ATGAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTCTATGCCCAAAATCG
TTCAAACAAAAGCCTGATGTTGTGAACTCCAAAATCCTTCTATAACTTACACTTAACAC
Found at i:14978343 original size:443 final size:440
Alignment explanation
Indices: 14976969--14978628 Score: 1880
Period size: 443 Copynumber: 3.7 Consensus size: 440
14976959 CACTTAACAC
* * * ** * *
14976969 TATGAAAAACAACAAAAAATTAAAATCACGCGAA-AATTGTTCGAATGTTTTTTTATGCCCAGAA
1 TATGAAACACAACGAAATATTAAAATCGTGC-AATAATTGTGCGAATG-GTTTTTATGCCCAGAA
* * * * * * * * * *
14977033 TTGTTC-GAAAACGAAGTCTGATATTTTGAGCTTCAAAATCC-TTTCTAAGTTACGCTTAACACT
64 TTGCTCAG-AAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACT
* * * * ** **
14977096 GTGAAAAATTAAAAACCAA-TGCTAGTTTTA-CCTTGTTTCAT-TGTTTGAGCAAGTTTAAAACA
128 ATGAAAAATT-AACACCAACGGCAAGTTTTATCCAAGTTTC-TGTGTTTGAGTGAGTTTAAAACA
* * * * * * *
14977158 -TCGATTCAATATATTCAAATTCATTTCCATTTAAAAAACCTTCTAAAACAATTCTTTCATGTTT
191 TTGGATTCAAGATATTCAAATTCATTTCCATTTTAAAACCCTGCTAAAACAATGCTTTCAT-ATT
* ** * * * * * * *
14977222 TTAAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTGGGC
255 TT-AAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGC
* ** * * * *
14977287 TTTTAACTGCTA-AAACAAGTTAGCAGACAACTAATCACATCAAGCGCCA-ATAACAACTTCACA
319 ----ACCCCCTATAAAC----TGGTAG---A--AAGCACAT-AA----CATAT-CCAACTTCACA
* ** * *
14977350 AATAATATCCAAATATCAAGATCATTCATATGTAATTCCTC-AAC-TCCTTAGAGCGCCTAAATT
365 AATAATATCCAAATATGAATTTCATTCATATGTAATTCC-CAAACATCCCTAGAGCACCTAAA--
* * **
14977413 CGCATCTAAAAGCAAATAAG
427 ---A---AAATGTATCTAAG
* *
14977433 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAAAATC
1 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
* * * * * * *
14977498 GTTCAGAAAGAAAAGTCTGATGTTTTAAGCTCCAAAATCC-TCTATAACTTACACTTAACACTAT
66 GCTCAGAAA-CAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTAT
* * * * ** * * ***
14977562 GAAAAATTAAAACCAATGG-AGGTTTTTTATATGTTTCT-TCGTTTGAG-CAGGTTCGGAACATT
130 GAAAAATTAACACCAACGGCAAGTTTTATCCAAGTTTCTGT-GTTTGAGTGA-GTTTAAAACATT
* * * * * * *
14977624 GGATTCAGGATTTTCAAATTCGTTTCCA-TTTAAAAACCTTCTAAAACAATGCTTTCCTGTTTTT
193 GGATTCAAGATATTCAAATTCATTTCCATTTTAAAACCCTGCTAAAACAATGCTTT-C--ATATT
* ** * *
14977688 TTAAAGCTTTACTCTGGTGAAAATCGTTTTC-AAGGCAAAACATAAAATTTCAAAAGC--TA---
255 TTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGG-AAAACATAAAGTTTCAAAAGCATTAGGC
14977747 ACCCCCTATAAACTGGTAGAAAGCACATAACATATCCAACTTCACAAATAATATCCAAATATGAA
319 ACCCCCTATAAACTGGTAGAAAGCACATAACATATCCAACTTCACAAATAATATCCAAATATGAA
14977812 TTTCATTCATATGTAATTCCCAAACATCCCTAGAGCACCTAAAAAAATGTATCTAAG
384 TTTCATTCATATGTAATTCCCAAACATCCCTAGAGCACCTAAAAAAATGTATCTAAG
14977869 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
1 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
14977934 GCTCAGAAACAAAGTCCGATGTTTTAAAGCTGC-AAATCCTTTTGTAACTTTCACTTAAACACTA
66 GCTCAGAAACAAAGTCCGATGTTTT-AAGCTGCAAAATCCTTTTGTAACTTTCACTT-AACACTA
14977998 TGAAAAATTAACACCAACGGCAAGTTTTATCCAAGTTTCTGTGTTTGAGTGAGTTTAAAACATTG
129 TGAAAAATTAACACCAACGGCAAGTTTTATCCAAGTTTCTGTGTTTGAGTGAGTTTAAAACATTG
14978063 GATTCAAGATATTCAAATTCATTTCCATTTTAAAACCCTGCTAAAACAATGCTTTCATAATTTTA
194 GATTCAAGATATTCAAATTCATTTCCATTTTAAAACCCTGCTAAAACAATGCTTTCAT-ATTTT-
14978128 AAAGGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTC-AAAGCATTAGGCAC
257 AAA-GCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGCAC
14978192 CCCCTATAAACTGGTAGAAAGCACATAACAATATCCAACTTCACAAATAATATCCAAATATGAAT
321 CCCCTATAAACTGGTAGAAAGCACATAAC-ATATCCAACTTCACAAATAATATCCAAATATGAAT
14978257 TTCATTCATATGTAATTCCCAAACATCCCTAGAGCACCT-AAAAAATGTATCTAAG
385 TTCATTCATATGTAATTCCCAAACATCCCTAGAGCACCTAAAAAAATGTATCTAAG
14978312 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
1 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
14978377 GCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTATG
66 GCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTATG
14978442 AAAAATTAACACCAAC-GCAAGTTTTA-CCAAGTTTCTGTGTTTGAGTGAGTTTAAAACATTGGA
131 AAAAATTAACACCAACGGCAAGTTTTATCCAAGTTTCTGTGTTTGAGTGAGTTTAAAACATTGGA
14978505 TTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAAACAATGCTTTCATATTTTAAA
196 TTCAAGATATTCAAATTCATTTCCATTTT-AAAACCCTGCTAAAACAATGCTTTCATATTTTAAA
14978570 GCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGC
260 GCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGC
14978629 TTCGAGTGCT
Statistics
Matches: 1065, Mismatches: 95, Indels: 97
0.85 0.08 0.08
Matches are distributed among these distances:
435 20 0.02
436 100 0.09
437 29 0.03
438 110 0.10
439 79 0.07
440 77 0.07
441 37 0.03
442 33 0.03
443 211 0.20
444 91 0.09
447 2 0.00
448 7 0.01
450 1 0.00
453 4 0.00
456 5 0.00
457 4 0.00
463 41 0.04
464 140 0.13
465 68 0.06
466 5 0.00
467 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (440 bp):
TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
GCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTTTGTAACTTTCACTTAACACTATG
AAAAATTAACACCAACGGCAAGTTTTATCCAAGTTTCTGTGTTTGAGTGAGTTTAAAACATTGGA
TTCAAGATATTCAAATTCATTTCCATTTTAAAACCCTGCTAAAACAATGCTTTCATATTTTAAAG
CTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTTTCAAAAGCATTAGGCACCCCCT
ATAAACTGGTAGAAAGCACATAACATATCCAACTTCACAAATAATATCCAAATATGAATTTCATT
CATATGTAATTCCCAAACATCCCTAGAGCACCTAAAAAAATGTATCTAAG
Found at i:14979532 original size:583 final size:569
Alignment explanation
Indices: 14978354--14979514 Score: 1328
Period size: 583 Copynumber: 2.0 Consensus size: 569
14978344 ATAATTGTGC
*
14978354 GAATGGTTTTTATGCCCAGAATTGCTCAGAAACAAAGTCCGATGTTTTAAGCTGCAAAATCCTTT
1 GAATGGTTTTTATGCCCAGAATTGCTCAGAAACAAAGTCCGATATTTTAAGCTGCAAAATCCTTT
* * *
14978419 TGTAACTTTCACTTAACACTATGAAAAATTAACACCAACGCAAGTTTTACCAAGTTTCTGTGTTT
66 TCTAACTTACACTTAACACTATGAAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTGTGTTT
** * *
14978484 GAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTTAAAAACCCTGCTAAA
131 GAGCAAGTTTAAAACATTCGATTCAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGCTAAA
* * * * * *
14978549 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAGTT
196 ACAATGCTTTCATATTTTAAAGCTGGACTACAGAGAAAATCATATTCAAAGAAAAACATAAAATT
* * *
14978614 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTGAAACAATTTAGCGCACATTAAGC
261 TCAAAAGCATTAGGCTTCGAGCGCTCCCCCTATAAACTGCTAAAACAAGTTAGCGCACATTAAGC
* * *
14978679 ACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCATTCCTCAAAATCCTTAGAGCACC
326 ACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATCAAAATCCTTAGAGCACC
* * *
14978744 TAAAAACGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTG
391 TAAAAACGCATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAATCGTGCAATAATTG
* * * *
14978809 TGCGAATGGTTTCTATGCCCAGAATTGTTCAAACCAAAGCCTGATGTTGTGAACTTCAAAATCCT
456 TGCGAATGGTTTCTATGCCCAAAATCGTTCAAACAAAAGCCTGATGTTGTGAACTCCAAAATCC-
*
14978874 TTGTATAACTTACACTTAACACTATGAAAAACAACAAAAATTAAAATCACGCGAAAATTGTT
520 TTCTATAACTTACACTTAACACTATG-------A-AAAAATTAAAA-CACGC--AAATTG-T
* * * * * *
14978936 CGAATGTTTTTTATGCCCAGAATTGTTC-GAAAACGAAGTCTGATATTTTGAGCTTCAAAATCC-
1 -GAATGGTTTTTATGCCCAGAATTGCTCAG-AAACAAAGTCCGATATTTTAAGCTGCAAAATCCT
* * * * * **
14978999 TTTCTAAGTTACGCTTAACACTGTGAAAAATTAAAAACCAATGCTAGTTTTACCTTGTTTCAT-T
64 TTTCTAACTTACACTTAACACTATGAAAAATT-AAAACCAACGCAAGTTTTACCAAGTTTC-TGT
* *
14979063 GTTTGAGCAAGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCA-TTTAAAAAACCTTC
127 GTTTGAGCAAGTTTAAAACATTCGATTCAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGC
* * * *
14979127 TAAAACAATTCTTTCATGTTTTTAAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACAT
192 TAAAACAATGCTTTCAT-ATTTT-AAAGCTGGACTACAGAGAAAATCATATTCAAAGAAAAACAT
* * ** **
14979192 AAAATTTCAAAAGCGTTGGGCTTTTAGCGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACA
255 AAAATTTCAAAAGCATTAGGCTTCGAGCGCTCCCCCTATAAACTGCTAAAACAAGTTAGC-G-C-
*
14979257 ACTAATCACATCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATAT
317 AC--AT----T-AAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTC--AT
* * **
14979322 GTAATTCCTCAACTCCTTAGAGCGCCTAAATTCGCATCTAAAAGCAAATAAGTATGAAACACAAC
373 -CAA------AA-TCCTTAGAGCACCTAAAAACGCATCTAAAAGCAAATAAGTATGAAACACAAC
* * *
14979387 GAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAAAATCGTTCAGAAAGAAA
430 GAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTCTATGCCCAAAATCGTTC--AAACAAA
* *
14979452 AGTCTGATGTT-TTAAGCTCCAAAATCC-TCTATAACTTACACTTAACACTATG-AAAAATTAAA
493 AGCCTGATGTTGTGAA-CTCCAAAATCCTTCTATAACTTACACTTAACACTATGAAAAAATTAAA
14979514 A
557 A
14979515 ACCAATGGAG
Statistics
Matches: 487, Mismatches: 63, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
582 56 0.11
583 127 0.26
584 85 0.17
585 1 0.00
586 1 0.00
587 2 0.00
589 2 0.00
593 1 0.00
594 46 0.09
595 11 0.02
596 1 0.00
597 2 0.00
603 2 0.00
604 122 0.25
605 3 0.01
606 25 0.05
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (569 bp):
GAATGGTTTTTATGCCCAGAATTGCTCAGAAACAAAGTCCGATATTTTAAGCTGCAAAATCCTTT
TCTAACTTACACTTAACACTATGAAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTGTGTTT
GAGCAAGTTTAAAACATTCGATTCAAGATATTCAAATTCATTTCCATTTTAAAAAACCTGCTAAA
ACAATGCTTTCATATTTTAAAGCTGGACTACAGAGAAAATCATATTCAAAGAAAAACATAAAATT
TCAAAAGCATTAGGCTTCGAGCGCTCCCCCTATAAACTGCTAAAACAAGTTAGCGCACATTAAGC
ACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATCAAAATCCTTAGAGCACC
TAAAAACGCATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAATCGTGCAATAATTG
TGCGAATGGTTTCTATGCCCAAAATCGTTCAAACAAAAGCCTGATGTTGTGAACTCCAAAATCCT
TCTATAACTTACACTTAACACTATGAAAAAATTAAAACACGCAAATTGT
Found at i:14980525 original size:479 final size:475
Alignment explanation
Indices: 14979796--14981354 Score: 2610
Period size: 479 Copynumber: 3.3 Consensus size: 475
14979786 AAATGTATCT
* * * *
14979796 AGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTTATGCCCAGA
1 AGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGG-TTTTTATGCCCAGA
* * * *
14979861 AATGCTCAGAAA--AAAGTCCGATGTTTTAAGCTGCAAAAATCCTTTGTAACTTTCACTTAACAC
65 ATTGTTCA-AAACCAAAGTCTGATGTTTTAAGCTGC-AAAATCCTTTATAACTTTCACTTAACAC
*
14979924 TACGAAAATTATTAAAACCAACGCAAGTTTTACCAGTTTCTTTGTTTGAGTGAGTTTAAACATTG
128 TACGAAAATTA-TAAAACCAACGCAAGTTTTACCAGTTTCTTTGTTTGAGTGAGTTAAAACATTG
14979989 GATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAA
192 GATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAA
14980054 GCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
257 GCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
14980119 TGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAA
322 TGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAA
14980184 CTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACC
387 CTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACC
14980249 TAAAAATGTATCTAAAAAGCAAATA
452 TAAAAATGTATCT-AAAAGCAAATA
*
14980274 AGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAA
1 AGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAA
14980339 TTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACT
66 TTGTTCA-AAACCAAAGTCTGATG-TTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACT
*
14980403 ACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAGTTTCTTTGTTTGAGTGAGTTAAAACATTG
129 ACGAAAATTAT-AAAACCAACGCAAGTTTTACC-AGTTTCTTTGTTTGAGTGAGTTAAAACATTG
14980468 GATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAA
192 GATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAA
14980533 GCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
257 GCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
14980598 TGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAA
322 TGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAA
14980663 CTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACC
387 CTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACC
14980728 TAAAAATGTATCTAAAAGCAAATA
452 TAAAAATGTATCTAAAAGCAAATA
*
14980752 AGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAA
1 AGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAA
* * * * *
14980817 TTGTTCAAAAGCAAAGCCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACAGTAT
66 TTGTTCAAAACCAAAGTCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTAC
14980882 GAAAA--ACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGG
131 GAAAATTA-TAAAACCAACGCAAGTTTTACC-AGTTTCTTTGTTTGAGTGAG-TTAAAACATTGG
* * * *
14980945 ATTCAAGATATTCAAATTTATTTCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAG
193 ATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAG
* * *
14981010 CTTGAGTCCAGTGAAAATCATTTTCAAAGGAAAACATGAAATTTCAAAAGCATTAGGCTTCGAGT
258 CTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGT
* * * * *
14981075 GCTCCCCCTATAAACTGCTAAAACAATTTAGCACACAATTATTC-CATTAAGCACCAATAACAAC
323 GCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAAC
* * *
14981139 TTCATAAATAATATCCAAATATGAAGATAATTCATATGTAATTCCTTAAAATCCTTAGAGCACCT
388 TTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCT
14981204 AAAAATGTATCTAAAAGCAAATA
453 AAAAATGTATCTAAAAGCAAATA
*
14981227 AGTATGAAACAC-GACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTATGCCCAGA
1 AGTATGAAACACAG-CGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGA
* * * *
14981291 ATTGTTCAAAACCAAAAGTCTGATGTTTTAAACTTCGAAATCCTTTATAACTTACACTTAACAC
65 ATTGTTCAAAACC-AAAGTCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACAC
14981355 CATGAAAAAC
Statistics
Matches: 1030, Mismatches: 42, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
474 1 0.00
475 217 0.21
476 219 0.21
477 72 0.07
478 207 0.20
479 314 0.30
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (475 bp):
AGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAA
TTGTTCAAAACCAAAGTCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTAC
GAAAATTATAAAACCAACGCAAGTTTTACCAGTTTCTTTGTTTGAGTGAGTTAAAACATTGGATT
CGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTT
GACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCT
CCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTC
ATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAA
AATGTATCTAAAAGCAAATA
Found at i:14983424 original size:454 final size:454
Alignment explanation
Indices: 14982247--14983850 Score: 2232
Period size: 454 Copynumber: 3.5 Consensus size: 454
14982237 TAACAACTCC
*
14982247 ACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAC-TCCTTAGAG-AGCCTAA
1 ACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTAAACATCCTTAGAGCA-CCTAA
** * *
14982310 ATTTGTATCTAAAAGAAAATAAGTATG-AACACGATGAAAAATTAAAATCGTGCAATAATTGTGC
65 AAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGC
* *
14982374 GAATGGTTTTTCTGCCCAGAATTGTTTAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTTT
130 GAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTTT
* * * *
14982439 GTAACTTTCGCTTAACACTATGAAAAATTAAAACCAACGCATGTTTTACCAAGTTTCTTTGTTTG
195 ATAACTTTCGCTTAACAGTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTG
** * * *
14982504 AGCAAGTTTAAAACATTGCATTCAAGATTTTCAAATTCATTCCCATTTAAAAACCTGCTAAAACA
260 AGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACA
* *
14982569 ACGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCACAGCAAAACATAAAATTTCA
325 ATGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCAAAGCAAAACATAAAATTTCA
* * *
14982634 AAAGCATTAGGCTTCGAGTGCTCACCCTGTAAACTGGTAGAAAGCACATAACAATATCCAACTTG
390 AAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGGTAGAAAGCACCTAACAATATCTAACTTG
* ** * * * *
14982699 ACAAATAATATCGAAATATGAATTTTGATTCATATGCAATTCCTAACCATCCTTAGAGCACCAAA
1 ACAAATAATATCCAAATATGAA-GATCATTCATATGTAATTCCTAAACATCCTTAGAGCACCTAA
* *
14982764 AAATGTATCTAAAAGCAAATAAGTATGAAACACGATGAAAAATTAAAATTGTGCAATAATTGTGC
65 AAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGC
* *
14982829 GAATGGTTTTTATGCCCAGAATTGTTTAGAAACAAAGTCTGATGTTTTTAGCTGCAAAATCCTTT
130 GAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTTT
14982894 ATAACTTTCGCTTAACAGTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTG
195 ATAACTTTCGCTTAACAGTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTG
* *
14982959 AGTGAGTTTAAAACATTGGATTCAAGATATTGAAATTTATTTCCATTTAAAAACCTGCTAAAACA
260 AGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACA
* *
14983024 ATGCTTTCTTATTTTAAAGCTTGACTCTAATGAAAATCGTTTTCAAAGCAAAACATAAAATTTCA
325 ATGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCAAAGCAAAACATAAAATTTCA
* *
14983089 AAAACATTAGGCTTCTAGTGCTCCCCCTGTAAACTGGTAGAAAGCACCTAACAATATCTAACTTG
390 AAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGGTAGAAAGCACCTAACAATATCTAACTTG
** *
14983154 ACAAATAATATCCAAATATGAATTTCATAT-TTATGTAATTCCTAAACATCCTTAGAGCACCTAA
1 ACAAATAATATCCAAATATGAAGATCAT-TCATATGTAATTCCTAAACATCCTTAGAGCACCTAA
* * * *
14983218 ATATGTATGTAAAAGCAAATAAGTACGAAATACAAT-AAAATATTAAAATCGTGCAATAATTGTG
65 AAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAA-ATTAAAATCGTGCAATAATTGTG
*
14983282 CGAATAGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTT
129 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTT
*
14983347 TATAACTTTCGCTTAACAGTGTGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTT
194 TATAACTTTCGCTTAACAGTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTT
* *
14983412 GGGTGTGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAAC
259 GAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAAC
* * * * * *
14983477 ATTTCTTTCATATTTTAAAGCTTTACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTC
324 AATGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCAAAGCAAAACATAAAATTTC
* * *
14983542 AAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACACAATTATTCA
389 AAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGGT---AGAA---AGCAC-C---TA---A
* * *
14983607 CATTAAGCACCAATAACAAGTTC
441 C---AA-TATC--TAAC---TTG
*
14983630 ATAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAA-ATCCTTAGAGCACCTAA
1 ACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCT-AAACATCCTTAGAGCACCTAA
* * * *
14983694 AAATGTATCTAAAAGCAAATAAGTATGAAACACAACGAGAAATTAAAATCGTACGATAATTGTGC
65 AAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGC
* * * *
14983759 GAATGGTTTTTATGCCCAGAATTATTC-GAAACCAAAAGTCTGATGTTTTAAACTTCGAAATCCT
130 GAATGGTTTTTATGCCCAGAATTGTTCAGAAA-C-AAAGTCTGATGTTTTAAGCTGCAAAATCCT
* * **
14983823 TTATAACTTACACTTAACACCATGAAAA
193 TTATAACTTTCGCTTAACAGTATGAAAA
14983851 GCAAGAACAA
Statistics
Matches: 1027, Mismatches: 92, Indels: 41
0.89 0.08 0.04
Matches are distributed among these distances:
452 21 0.02
453 23 0.02
454 404 0.39
455 362 0.35
457 3 0.00
460 5 0.00
461 1 0.00
464 2 0.00
467 2 0.00
470 2 0.00
471 2 0.00
473 4 0.00
475 5 0.00
476 135 0.13
477 56 0.05
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (454 bp):
ACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTAAACATCCTTAGAGCACCTAAA
AATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGCG
AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTTTA
TAACTTTCGCTTAACAGTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGA
GTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACAA
TGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCAAAGCAAAACATAAAATTTCAA
AAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGGTAGAAAGCACCTAACAATATCTAACTTG
Found at i:14985528 original size:126 final size:126
Alignment explanation
Indices: 14985300--14985547 Score: 333
Period size: 126 Copynumber: 2.0 Consensus size: 126
14985290 GCAAATAAGT
* * * *
14985300 ATGAAAAACAACGAAAAATTAAAGTCATGCAATAATTGTGCGAATGATTTTTATGTCCAGAATTG
1 ATGAAAAACAACGAAAAATTAAAATCACGCAATAATTGTGCGAAAGATTTTTATATCCAGAATTG
*
14985365 TTCAAAACCAAAAGTCTGATATTTTAAACATCGAAATCCTTTATAACTTACACTTAACACC
66 TTCAAAACCAAAAGTCTGATATTTTAAACATCAAAATCCTTTATAACTTACACTTAACACC
*
14985426 ATGAAAAACAACGACAAAATTAAAATCACGCGAA-AATTGTTCGAAAG-TCTTTTATATCCAGAA
1 ATGAAAAACAACGA-AAAATTAAAATCACGC-AATAATTGTGCGAAAGAT-TTTTATATCCAGAA
* * * * *
14985489 TTGTTCGAAAA-C-AAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTACACTTAA
63 TTGTTC-AAAACCAAAAGTCTGATATTTTAAACATCAAAATCCTTTATAACTTACACTTAA
14985548 AACAGTAGAA
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
126 56 0.52
127 45 0.42
128 6 0.06
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.30
Consensus pattern (126 bp):
ATGAAAAACAACGAAAAATTAAAATCACGCAATAATTGTGCGAAAGATTTTTATATCCAGAATTG
TTCAAAACCAAAAGTCTGATATTTTAAACATCAAAATCCTTTATAACTTACACTTAACACC
Found at i:14985726 original size:126 final size:128
Alignment explanation
Indices: 14985512--14985741 Score: 338
Period size: 126 Copynumber: 1.8 Consensus size: 128
14985502 AAGTCTGATA
* * * *
14985512 TTTTGAGCTTCAAAATCCTTTCTAAGTTACACTTAAAACAGTAGAAAAATTAAAAACCAATGCTA
1 TTTTAAGCTTCAAAATCCTTTATAACTTACACTTAAAACAGTAGAAAAATTAAAAACCAATGCAA
* *
14985577 GTTTTACCTTGTTTCATTGTTTGACCAGGTTTAAAACATTCGATTGAAAAATGAAATAGGTTG
66 GTTTTACCATGTTTCATTATTTGACCAGGTTTAAAACATTCGATTGAAAAATGAAATAGGTTG
* *
14985640 TTTTAAGCTTCAAAATCCTTTATAACTTACACTTAACACTGT-GAAAAATT-AAAACCAATGCAA
1 TTTTAAGCTTCAAAATCCTTTATAACTTACACTTAAAACAGTAGAAAAATTAAAAACCAATGCAA
* * * *
14985703 GTTTTGCCATGTTTCTTTATTTGAGCATGTTTAAAACAT
66 GTTTTACCATGTTTCATTATTTGACCAGGTTTAAAACAT
14985742 CGGATTCAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
126 45 0.50
127 8 0.09
128 37 0.41
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (128 bp):
TTTTAAGCTTCAAAATCCTTTATAACTTACACTTAAAACAGTAGAAAAATTAAAAACCAATGCAA
GTTTTACCATGTTTCATTATTTGACCAGGTTTAAAACATTCGATTGAAAAATGAAATAGGTTG
Found at i:14988657 original size:924 final size:917
Alignment explanation
Indices: 14986676--14989496 Score: 3746
Period size: 924 Copynumber: 3.1 Consensus size: 917
14986666 TGAAATTGGT
* *
14986676 TGTTTTAAGCTTCAAAATCATTTATAACTTAT-ACTTAACACTATGAAAAATTAAAACCAATGCA
1 TGTTTTAAGCTTCAAAATCCTTTATAACTT-TCACTTAACACTATGAAAAACTAAAACCAATGCA
** * * *
14986740 AGTTTTACCTTGTTTCTTTATTTGAGCATGTTTAAAACATCGGATTCAAGATATTCAAATTCATT
65 AGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATT
* * * * * *
14986805 TTCGTTTAAAAACCTGCTAAAACAATGCTTTCGTAGTTTAAACCTTTACTCCAGTGAAAATCATT
130 TCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATT
*
14986870 TTCAAAGCAAAACATAAAATTAT-AAAAGCATTAGGCTTCGAGTGCTCCCCTGATAAACTGCTAA
195 TTCAAAGCAAAACATAAAATT-TCAAAAGCATTAGGCTTCGAGTGCTCCCCTG-TAAACTGGT--
* *
14986934 AATAATTTAGCACACAATTAATCACATGAAGCACCAATAACAACTTCACAAATAATATCCAAATA
256 -AGAA---AG--CAC-A-TAA-CA-AT---------ATCA-AACTTCACAAATAATATCCAAATA
** * * * **
14986999 TGAAGATCATTCATATATAATTCCTCAAC-TCCTTAGAGCGCCTAAATTTGTATCTAAAAGAAAA
301 TGAATTTCATTCATATGTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAA
* * * * * *
14987063 TAAGTATG-AACACGATGAAAAATTAAAATCGTGCAATAATTGTGCGAATGATTTTTACGCCCAA
366 TAAGTATGAAACACAATGAAATATTAAAATCATGCAATAATTGTGCGAATGGTTTTTATGCCCAG
* * * *
14987127 AATTGTTCAGAAAGAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTGCAATTAACACT
431 AATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACT
* * * * * **
14987192 ATGAAAAATTAAAACCAATGGGAAGTTTTA-TATGTTTCTTTGTTTGAGCAAGTTTAAAACATTG
496 ATGAAAAACTAAAACCAA-CGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTG
* * *
14987256 GATTCAAGATTTTCAAATTCATTTCCA-TTAAAAACCTTCTAAAACAATGCTTTCTTATTTGAAA
560 GATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAA
* *
14987320 GCTTTACTCTAGTGAAAATCGTTTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
625 GCTTGACTCTAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAG
* * * *
14987385 TGCTCCGCCTGTAAACTGGTAGAA-AG--CAC-A-TA---AC----AGTATC--CAACTTCACAA
690 TGCTCC-CCTATAAACT-GTACAATAGCACACAATTATTCACATTAAGCACCAACAACTTCACAA
* ** * * *
14987436 ATAATATGCAAATATGAATTTCATTCATATGCAAATT-GTAAACATCCTTAGAGCAACTAAAAAT
753 ATAATATCCAAATATGAAGATCATTCATATG-TAATTCCTAAAC-TCCTTAGAGCCA-TAAAAAT
* * * **
14987500 GTATGTAAAAGCAAATAAGTATGAAACACAACGAAATATGAAAATCGTATAATAATTGTGCGAAT
815 GTATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAAT
* *
14987565 GGTTTTTATGCTCAGAATTGTTCAGAAAGAAAGTCTGA
880 GGTTTTTATGCCCAGAATTGTTCAGAAAAAAAGTCTGA
* * * ** *
14987603 TGTTTTAAGCTACAAAATCGTTCATAACTTTTGCTTAACACTATGAAAAACTAAAACCAACGCAA
1 TGTTTTAAGCTTCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAACTAAAACCAATGCAA
* **
14987668 GTTTTACCAAGTTTCTTTGTTTTAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
66 GTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
* *
14987733 CCATTTAAAAACCTGCTAAAACAACGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCGTTT
131 CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATTT
14987798 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTGTAAACTGGTAGAAA
196 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTGTAAACTGGTAGAAA
14987863 GCACATAACAATATCAAACTTCACAAATAATATCCAAATATGAATTTCATTCATATGTAATTCCT
261 GCACATAACAATATCAAACTTCACAAATAATATCCAAATATGAATTTCATTCATATGTAATTCCT
* * *
14987928 AAACATCCTTAGAGCACCTAAAAATGTATCAAAAATAAAATAAGTATGAAACACAACGAAATATT
326 AAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAATGAAATATT
14987993 AAAATCATGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATG
391 AAAATCATGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATG
*
14988058 TTTTAAGCTGCAAAATCCTTTATAACTTTCACTTTACACTATGAAAAACTAAAACCAACGCAAGT
456 TTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAACTAAAACCAACGCAAGT
* * *
14988123 TTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTAGATTCAAGATATTCAAATTTATTTAC
521 TTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCC
* * * *
14988188 ATTTAAAAACCTGCTCAAACAATGCTTTCATATTTTAAAACTTGACTCCAGTGAAAATCATTTTC
586 ATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAGTGAAAATCATTTTC
* *
14988253 AAAGG-AAACATAAAATTTCAAAAGTATTAGGTTTCGAGTGCTCCACCTATAAACTGCTAAAACA
651 AAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCC-CCTATAAACTG-T---ACA
14988317 ATTTAGCACACAATTATTCACATTAAGCACCAACAACTTCACAAATAATATCCAAATATGAAGAT
711 A--TAGCACACAATTATTCACATTAAGCACCAACAACTTCACAAATAATATCCAAATATGAAGAT
* * *
14988382 CATTCATATGTAATTCCTCAACTCCTTAGAGCGCATAAAATTTGTATCTAAAAGAAAATAAGTAT
774 CATTCATATGTAATTCCTAAACTCCTTAGAGC-CATAAAA-ATGTATCTAAAAGCAAATAAGTAT
*
14988447 G-AACACAATGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTT
837 GAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTT
* *
14988511 TAGAAATAAAGTCTGA
902 CAGAAAAAAAGTCTGA
* *
14988527 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTAT-AAGAAACTAAAACCAATGCA
1 TGTTTTAAGCTTCAAAATCCTTTATAACTTTCACTTAACACTATGAA-AAACTAAAACCAATGCA
*
14988591 AGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATT
65 AGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATT
* *
14988656 TCCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCATT
130 TCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATT
* *
14988721 TTCAAAGCAAAACATAAAATTTCAAAAGCATTACGTTTCGAGTGCTCCCCCTGTAAACTGGTAGA
195 TTCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCT-CCCCTGTAAACTGGTAGA
* ** * *
14988786 AAGCACAAAATGATATTC-AACTTCAGAAA-AATATCCAAATATGAATTTTATTCATATGTAATT
259 AAGCACATAACAATA-TCAAACTTCACAAATAATATCCAAATATGAATTTCATTCATATGTAATT
* * * *
14988849 CCTAAACATCCTTAGAACACCTACAAATGTATCTAAAGGCAAATAAGTATGAAACACAATGAAAT
323 CCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAATGAAAT
* * *
14988914 ATTAAAAT-AGTGCAATAATTGTGCGAATGGTTTGTATGCCCAGTATTATTCAGAAACAAAGTCT
388 ATTAAAATCA-TGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCT
* * * * * *
14988978 GATGTTTTTAGCTGTAAAATCTTTTATAACTTTCGCTTAACAGTATGTAAAACTAAAACCAACGC
452 GATGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAACTAAAACCAACGC
14989043 AAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCAT
517 AAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCAT
*
14989108 TTCCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAATGAAAATCAT
582 TTCCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAGTGAAAATCAT
14989173 TTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCATATAAACTG--C-
647 TTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCC-TATAAACTGTACA
* * *
14989235 -TAGCAAACAATTATTCACATTAAGCACCAATAACAACTTCATAAA-AAAATCCAAATATGAAGA
711 ATAGCACACAATTATTCACATTAAGCACC---AACAACTTCACAAATAATATCCAAATATGAAGA
* * *
14989298 TCATTCATATGTAATTCCTTAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAATA
773 TCATTCATATGTAATTCC-TAAACTCCTTAGAGC-CATAAAAATGTATCTAAAAGCAAATAAGTA
* * *
14989363 TGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTATGCCCAAAATTGT
836 TGAAACACAACGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGT
* *
14989428 TCA-AAAGCAAAAGTGTAA
901 TCAGAAA--AAAAGTCTGA
* * * *
14989446 TGTTTTAAACTTCGAAATCCTTTATAACTTACACTTAACACCATGAAAAAC
1 TGTTTTAAGCTTCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAAC
14989497 AACAACAAAA
Statistics
Matches: 1690, Mismatches: 161, Indels: 94
0.87 0.08 0.05
Matches are distributed among these distances:
904 49 0.03
905 51 0.03
906 226 0.13
907 60 0.04
909 3 0.00
912 2 0.00
914 5 0.00
915 30 0.02
916 5 0.00
917 61 0.04
918 95 0.06
919 52 0.03
920 4 0.00
923 10 0.01
924 653 0.39
925 152 0.09
926 12 0.01
927 220 0.13
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (917 bp):
TGTTTTAAGCTTCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAACTAAAACCAATGCAA
GTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATTT
TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTGTAAACTGGTAGAAA
GCACATAACAATATCAAACTTCACAAATAATATCCAAATATGAATTTCATTCATATGTAATTCCT
AAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAATGAAATATT
AAAATCATGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATG
TTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTATGAAAAACTAAAACCAACGCAAGT
TTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCC
ATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAGTGAAAATCATTTTC
AAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTATAAACTGTACAATAGC
ACACAATTATTCACATTAAGCACCAACAACTTCACAAATAATATCCAAATATGAAGATCATTCAT
ATGTAATTCCTAAACTCCTTAGAGCCATAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAA
CGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAAAAA
AGTCTGA
Found at i:14988681 original size:471 final size:462
Alignment explanation
Indices: 14986676--14989496 Score: 3529
Period size: 453 Copynumber: 6.1 Consensus size: 462
14986666 TGAAATTGGT
* * * * *
14986676 TGTTTTAAGCTTCAAAATCATTTATAACTTAT-ACTTAACACTATGAAAAATTAAAACCAATGCA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTT-TCGCTTAACACTATGAAAAACTAAAACCAACGCA
** * * *
14986740 AGTTTTACCTTGTTTCTTTATTTGAG-CATGTTTAAAACATCGGATTCAAGATATTCAAATTCAT
65 AGTTTTACCAAGTTTCTTTGTTTGAGTGA-GTTTAAAACATTGGATTCAAGATATTCAAATTCAT
* * * * * *
14986804 TTTCGTTTAAAAACCTGCTAAAACAATGCTTTCGTAGTTTAAACCTTTACTCCAGTGAAAATCAT
129 TTCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCAT
*
14986869 TTTCAAAGCAAAACATAAAATTAT-AAAAGCATTAGGCTTCGAGTGCTCCCCTGATAAACTGCTA
194 TTTCAAAGCAAAACATAAAATT-TCAAAAGCATTAGGCTTCGAGTGCTCCCCT-ATAAACTGGT-
* *
14986933 AAATAATTTAGCACACAATTAATCACATGAAGCACCAATAACAACTTCACAAATAATATCCAAAT
256 --ACAA---AGCACACAA-T-ATCACATTAA-CACC----ACAACTTCACAAATAATATCCAAAT
** * * * ** *
14986998 ATGAAGATCATTCATATATAATTCCTCAAC-TCCTTAGAGCGCCTAAATTTGTATCTAAAAGAAA
309 ATGAATTTCATTCATATGTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAA
* * * * *
14987062 ATAAGTATG-AACACGATGAAAAATTAAAATCGTGCAATAATTGTGCGAATGATTTTTACGCCCA
374 ATAAGTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCA
* *
14987126 AAATTGTTCAGAAAGAAAGTCTGA
439 GAATTGTTCAGAAACAAAGTCTGA
* * ** * * *
14987150 TGTTTTAAGCTCCAAAATCCTTTATAACTTGCAATTAACACTATGAAAAATTAAAACCAATGGGA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAA-CGCA
* * ** *
14987215 AGTTTTA-TATGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATT
65 AGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATT
* * * * * *
14987279 TCCA-TTAAAAACCTTCTAAAACAATGCTTTCTTATTTGAAAGCTTTACTCTAGTGAAAATCGTT
130 TCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATT
* * *
14987343 TTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCGCCTGTAAACTGGTAGA
195 TTCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCC-CCTATAAACTGGTACA
* * *
14987408 AAG--CAC-ATA--ACAGT---ATC-CAACTTCACAAATAATATGCAAATATGAATTTCATTCAT
259 AAGCACACAATATCACATTAACACCACAACTTCACAAATAATATCCAAATATGAATTTCATTCAT
* * * *
14987464 ATGCAAATT-GTAAACATCCTTAGAGCAACTAAAAATGTATGTAAAAGCAAATAAGTATGAAACA
324 ATG-TAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACA
* ** *
14987528 CAACGAAATATGAAAATCGTATAATAATTGTGCGAATGGTTTTTATGCTCAGAATTGTTCAGAAA
388 CAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA
*
14987593 GAAAGTCTGA
453 CAAAGTCTGA
* * * *
14987603 TGTTTTAAGCTACAAAATCGTTCATAACTTTTGCTTAACACTATGAAAAACTAAAACCAACGCAA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAACGCAA
*
14987668 GTTTTACCAAGTTTCTTTGTTTTAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
66 GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
* * *
14987733 CCATTTAAAAACCTGCTAAAACAACGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCGTTT
131 CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTT
* *
14987798 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTGTAAACTGGTAGAAA
196 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTATAAACTGGTACAAA
* *
14987863 G--CAC-ATA--AC---AATATCA-AACTTCACAAATAATATCCAAATATGAATTTCATTCATAT
261 GCACACAATATCACATTAACACCACAACTTCACAAATAATATCCAAATATGAATTTCATTCATAT
* **
14987919 GTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCAAAAATAAAATAAGTATGAAACACAA
326 GTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAA
*
14987984 CGAAATATTAAAATCATGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAA
391 CGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAA
14988049 AGTCTGA
456 AGTCTGA
* *
14988056 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTTACACTATGAAAAACTAAAACCAACGCAA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAACGCAA
* *
14988121 GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTAGATTCAAGATATTCAAATTTATTT
66 GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
* * *
14988186 ACATTTAAAAACCTGCTCAAACAATGCTTTCATATTTTAAAACTTGACTCCAGTGAAAATCATTT
131 CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTT
* * * *
14988251 TCAAAG-GAAACATAAAATTTCAAAAGTATTAGGTTTCGAGTGCTCCACCTATAAACTGCTAAAA
196 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCC-CCTATAAACTGGT---A
*
14988315 CAATTTAGCACACAATTATTCACATTAAGCACCAACAACTTCACAAATAATATCCAAATATGAAG
257 CAA---AGCACACAA-TA-TCACATTAA-CACC-ACAACTTCACAAATAATATCCAAATATGAAT
* * * * * *
14988380 ATCATTCATATGTAATTCCTCAAC-TCCTTAGAGCGCATAAAATTTGTATCTAAAAGAAAATAAG
315 TTCATTCATATGTAATTCCTAAACATCCTTAGAGCACCTAAAA-ATGTATCTAAAAGCAAATAAG
* *
14988444 TATG-AACACAATGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
379 TATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATT
* *
14988508 GTTTAGAAATAAAGTCTGA
444 GTTCAGAAACAAAGTCTGA
*
14988527 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTAT-AAGAAACTAAAACCAATGCA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAA-AAACTAAAACCAACGCA
** *
14988591 AGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATT
65 AGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATT
*
14988656 TCCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCATT
130 TCCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATT
* * * *
14988721 TTCAAAGCAAAACATAAAATTTCAAAAGCATTACGTTTCGAGTGCTCCCCCTGTAAACTGGTAGA
195 TTCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCT-CCCCTATAAACTGGTACA
* * * *
14988786 AAGCACA-AA-ATGATATT-------CAACTTCAGAAA-AATATCCAAATATGAATTTTATTCAT
259 AAGCACACAATATCACATTAACACCACAACTTCACAAATAATATCCAAATATGAATTTCATTCAT
* * *
14988841 ATGTAATTCCTAAACATCCTTAGAACACCTACAAATGTATCTAAAGGCAAATAAGTATGAAACAC
324 ATGTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAC
* * * * *
14988906 AATGAAATATTAAAATAGTGCAATAATTGTGCGAATGGTTTGTATGCCCAGTATTATTCAGAAAC
389 AACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAAC
14988971 AAAGTCTGA
454 AAAGTCTGA
* * * * *
14988980 TGTTTTTAGCTGTAAAATCTTTTATAACTTTCGCTTAACAGTATGTAAAACTAAAACCAACGCAA
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAACGCAA
14989045 GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
66 GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
* * *
14989110 CCATTTAAAAACCTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAATGAAAATCATTT
131 CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTT
* *
14989175 TCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCATATAAACTGCTAGCA
196 TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCC-TATAAACTGGTA-CA
** * * **
14989240 AA-CA-ATTAT-TCACATTAAGCACCAATAACAACTTCATAAA-AAAATCCAAATATGAAGATCA
259 AAGCACACAATATCACATTAA-CACC----ACAACTTCACAAATAATATCCAAATATGAATTTCA
*
14989301 TTCATATGTAATTCCTTAAA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAATATG
319 TTCATATGTAATTCC-TAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATG
* * * *
14989365 AAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTATGCCCAAAATTGTTC
383 AAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTC
* *
14989430 A-AAAGCAAAAGTGTAA
448 AGAAA-C-AAAGTCTGA
* * * * * *
14989446 TGTTTTAAACTTCGAAATCCTTTATAACTTACACTTAACACCATGAAAAAC
1 TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAAC
14989497 AACAACAAAA
Statistics
Matches: 2072, Mismatches: 214, Indels: 130
0.86 0.09 0.05
Matches are distributed among these distances:
451 42 0.02
452 155 0.07
453 900 0.43
454 105 0.05
456 5 0.00
459 2 0.00
460 3 0.00
461 3 0.00
462 7 0.00
463 4 0.00
464 4 0.00
465 146 0.07
466 59 0.03
467 2 0.00
469 5 0.00
470 7 0.00
471 277 0.13
472 119 0.06
473 108 0.05
474 109 0.05
475 10 0.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (462 bp):
TGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAACGCAA
GTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTT
CCATTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTT
TCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTATAAACTGGTACAAA
GCACACAATATCACATTAACACCACAACTTCACAAATAATATCCAAATATGAATTTCATTCATAT
GTAATTCCTAAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAA
CGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAA
AGTCTGA
Found at i:14990484 original size:502 final size:501
Alignment explanation
Indices: 14989534--14990491 Score: 1207
Period size: 502 Copynumber: 1.9 Consensus size: 501
14989524 TTGTTCGACT
* * * * * * * *
14989534 GTTTTTTATGCCCAAAATTGTTCGAAAATTAAGTCTGATGTTTTGAGCTTCAAATCCTTTCTAAG
1 GTTTTTTATGCCCAAAATTGTTCAAAAATGAAATCGGATGTTTTAAGCTTCAAATCCATTATAAC
* ** * *
14989599 TTACGCTTAACACTGTGAAAAATTAAAAACCAATGTTAGTTTTACCTAGTTTCATTGTTTGAGCA
66 TTACACTTAACACTGTGAAAAATTAAAAACCAATGCAAGTTTTACATAGTTTCATTATTTGAGCA
* * * * *
14989664 GGTTTAAAACGTTCGATTCAATAGATTCAAATTCATTTGCATTTAAAAACCTTCTAAAACAATTC
131 AGTTTAAAACGATCGATTCAAGAGATTCAAATTCATTTGCATTTAAAAACCTGCTAAAACAATGC
*
14989729 CTTCATATTTTAAAGCTGGACTATAGAGAAAATCAAATTCGAAGAAAAACAAAAAAATTCAAAAG
196 CTTCATATTTTAAAGCTGGACTACAGAGAAAATCAAATTCGAAGAAAAACAAAAAAATTCAAAAG
* * * * * *
14989794 CATTAGGCTTTTGCTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACCAGTAAACACATCA
261 CATTAGGCTTTCGCTGCTCCCTCTATAAACTGCTAAAACAAGTTAACACACAAGTAAACACAACA
* * *
14989859 GGCGCCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCACATGTAAACTCACAAG
326 AGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCACTCACATGTAAACTCACAAG
* *
14989924 TTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAACGAAAAATTCAAA
391 -TCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAA
14989989 TGTTGCAAAAATGGTTTTTATGCCACAATTTTGAAATTTTGCAAATG
455 TGTTGCAAAAATGGTTTTTATGCCACAATTTTGAAATTTTGCAAATG
*
14990036 GTTTTTTCTGCCCAAAATTGTTCAAAAATGAAATCGGATGTTTTAAGCTTCAAAATCCATTATAA
1 GTTTTTTATGCCCAAAATTGTTCAAAAATGAAATCGGATGTTTTAAGCTTC-AAATCCATTATAA
* ** *
14990101 CTTACACTTAACACTGTGAAAAATT-AAAACTAATGCAAGTTTTATCAT-GTTTTTTTATTTTAG
65 CTTACACTTAACACTGTGAAAAATTAAAAACCAATGCAAGTTTTA-CATAGTTTCATTATTTGAG
* * * *
14990164 CAAGTTTAAAAC-ATCGTATTCAAGATATTCAAATTCGTTTTCGTTTAAAAACCTGCTAAAACAA
129 CAAGTTTAAAACGATCG-ATTCAAGAGATTCAAATTCATTTGCATTTAAAAACCTGCTAAAACAA
* ** * * ** * * *
14990228 TGCTTTCATATTTTAAAGCTTTACTCCAGTGAAAATCATTTTC-AAGGCAAAAC-ATAAAATTAT
193 TGCCTTCATATTTTAAAGCTGGACTACAGAGAAAATCAAATTCGAA-GAAAAACAAAAAAATT-C
* * * * *
14990291 AAAAGCATTAGGC-TTCGAGTGCTCCC-CTTATAAACTGCTAAAATAATTTAACACACAATTAAT
256 AAAAGCATTAGGCTTTCG-CTGCTCCCTC-TATAAACTGCTAAAACAAGTTAACACACAAGTAAA
* * *
14990354 CACAACAAGCACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATT
319 CACAACAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCACTCACATGTAA--
* *
14990419 CCTCA-AA-TCCTTAGAGCACCT-AAAATGTATCTAAAAAGCAAATAAGTATGAAACACGAGCGA
382 ACTCACAAGTCCTTAGAGCACCTAAAAATGTATCT-AAAAGCAAATAAGTATGAAACAC-AACGA
14990481 AAAATTAAAAT
445 AAAATTAAAAT
14990492 CGTGCGATAA
Statistics
Matches: 386, Mismatches: 59, Indels: 22
0.83 0.13 0.05
Matches are distributed among these distances:
500 11 0.03
501 52 0.13
502 281 0.73
503 38 0.10
504 4 0.01
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (501 bp):
GTTTTTTATGCCCAAAATTGTTCAAAAATGAAATCGGATGTTTTAAGCTTCAAATCCATTATAAC
TTACACTTAACACTGTGAAAAATTAAAAACCAATGCAAGTTTTACATAGTTTCATTATTTGAGCA
AGTTTAAAACGATCGATTCAAGAGATTCAAATTCATTTGCATTTAAAAACCTGCTAAAACAATGC
CTTCATATTTTAAAGCTGGACTACAGAGAAAATCAAATTCGAAGAAAAACAAAAAAATTCAAAAG
CATTAGGCTTTCGCTGCTCCCTCTATAAACTGCTAAAACAAGTTAACACACAAGTAAACACAACA
AGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCACTCACATGTAAACTCACAAG
TCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAACGAAAAATTAAAAT
GTTGCAAAAATGGTTTTTATGCCACAATTTTGAAATTTTGCAAATG
Found at i:14991420 original size:476 final size:475
Alignment explanation
Indices: 14990023--14991545 Score: 2254
Period size: 476 Copynumber: 3.2 Consensus size: 475
14990013 ACAATTTTGA
* * * * * ** * *
14990023 AATTTTGCAAATGGTTTTTTCTGCCCAAAATTGTTCAAAAATGAAA-TCGGATGTTTTAAGCTTC
1 AATTGTGCGAATGG-TTTTTATGCCCAGAATTGTTCAGAAACCAAAGTCTGATGTTTTAAGCTGC
* * * * * * *
14990087 AAAATCCATTATAACTTACACTTAACACTGTGAAAAATTAAAACTAATGCAAGTTTTATCATGTT
65 AAAATCCTTTATAACTTACACTTAACACTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTT
* * * ** * * * * *
14990152 TTTTTATTTTAGCAAGTTTAAAACATCGTATTCAAGATATTCAAATTCGTTTTCGTTTAAAAACC
130 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
*
14990217 TGCTAAAACAATGCTTTCATATTTTAAAGCTTTACTCCAGTGAAAATCATTTTC-AAGGCAAAAC
195 TGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGG-AAAAC
* *
14990281 ATAAAATTAT-AAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAATAATTTAACAC
259 ATAAAATT-TCAAAAGCATTAGGCTTCGAGTGCTCCCC-TATAAACTGCTAAAACAATTTAGCAC
* * *
14990345 ACAATTAATCACAACAAGCACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCA
322 ACAATTATTCAC-ATAAGCACGAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCA
14990410 TATGTAATTCCTC-AAATCCTTAGAGCACCT-AAAATGTATCTAAAAAGCAAATAAGTATGAAAC
386 TATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAGCAAATAAGTATGAAAC
14990473 ACGAGCGAAAAATTAAAATCGTGCGAT
450 AC-AGCGAAAAATTAAAATCGTGCGAT
*
14990500 AATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGC
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACCAAAGTCTGATG-TTTTAAGCTGC
* * *
14990564 AAAATCCTTTATAACTTTCACTT-ACACTACG-AAAATTAAAACCAACGCAAGTTTTACCAAGTT
65 AAAATCCTTTATAACTTACACTTAACACTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTT
*
14990627 TCTTTGTTTGAGTGAGTTTAAAACATT-GATTCAAGATATTCAAATTAATTTCCATTTAAAAACC
130 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
*
14990691 T-CTAAAACAATGCTTTCATATTTTAAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAAC
195 TGCTAAAACAATGCTTTCATATTTT-AAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAAC
* *
14990755 ATAAAATTTCAAAAGCATTAGGCTTTCGAGTGCT-CCCTGTAAACTG-TAAAACAGTTTAGC-CA
259 ATAAAATTTCAAAAGCATTAGGC-TTCGAGTGCTCCCCTATAAACTGCTAAAACAATTTAGCACA
* *
14990817 TATTTATTCA-ATAAGCACG-ATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
323 CAATTATTCACATAAGCACGAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
*
14990880 TGTAAATCCT-AAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAC
388 TGTAATTCCTCAAA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAC
* * *
14990944 AACGAAATATTAAAATCGTGCAAT
452 AGCGAAAAATTAAAATCGTGCGAT
*
14990968 AATTGTGCGAATAGTTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTAAGCTGCA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACCAAAGTCTGATGTTTTAAGCTGCA
* *
14991032 AAATCCTTTATAACTTTCGCTTAACACTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTT
66 AAATCCTTTATAACTTACACTTAACACTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTT
*
14991097 CTTTGTTTGAGTGAGTTTAAAACATTGGATTCCAGATATTCAAATTCATTTCCATTTAAAAACCT
131 CTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
14991162 GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACAT
196 GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACAT
* *
14991227 AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCATATAAACAGCTAAAACAATTTAGCAAACA
261 AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCC-TATAAACTGCTAAAACAATTTAGCACACA
* *
14991292 ATTATTCACATTAAGCACGAATAACAACTTTATAAATAATATCCAAATATGAAGATCATTCATAT
325 ATTATTCACA-TAAGCACGAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATAT
*
14991357 GTAATTCCTCAAAATCTTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAG
389 GTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAG
14991422 CGAAAAATTAAAATCGTGCGAT
454 CGAAAAATTAAAATCGTGCGAT
* * *
14991444 AATTGTGCGAATGGTTTTTATGCTCAGAATTGTTCA-AAACCAAAAGTCTGATGTTTTAAACTTC
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACC-AAAGTCTGATGTTTTAAGCTGC
* *
14991508 GAAATCCTTTATAACTTACACTTAACACCATGAAAAAC
65 AAAATCCTTTATAACTTACACTTAACACTATGAAAAAC
14991546 AACAAGAAAA
Statistics
Matches: 951, Mismatches: 72, Indels: 46
0.89 0.07 0.04
Matches are distributed among these distances:
467 33 0.03
468 133 0.14
469 113 0.12
470 111 0.12
471 39 0.04
472 24 0.03
473 41 0.04
474 91 0.10
475 76 0.08
476 191 0.20
477 99 0.10
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (475 bp):
AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACCAAAGTCTGATGTTTTAAGCTGCA
AAATCCTTTATAACTTACACTTAACACTATGAAAAACTAAAACCAACGCAAGTTTTACCAAGTTT
CTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACAT
AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTATAAACTGCTAAAACAATTTAGCACACAA
TTATTCACATAAGCACGAATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGT
AATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCG
AAAAATTAAAATCGTGCGAT
Found at i:14994788 original size:480 final size:479
Alignment explanation
Indices: 14992874--14996708 Score: 3945
Period size: 480 Copynumber: 7.9 Consensus size: 479
14992864 AAACGATATC
*
14992874 CAACTTCACAAATAATATCCAAATATG-AGTTTCATTCATATGTAATTCCTCAAAATCCTTAGAG
1 CAACTTCACAAATAATATCCAAATATGAAG-ATCATTCATATGTAATTCCTCAAAATCCTTAGAG
* *
14992938 CACCTAAAAATGTATCTAAAAAAGCAAATAAGTACGGAACGCAGCGAAAAATTAAAATCGTGCGA
65 CACCTAAAAATGTATCT--AAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGA
14993003 TAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGC
128 TAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGC
* *
14993068 AAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAG
193 AAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAG
*
14993133 TTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAA
258 TTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAA
* * *
14993198 CCTGCTAAAACAATGCCTTCATA-TTTAAAGCTTGACTCCAGTGAAAATCATTTTCGCAGGAAAA
323 CCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAA
*
14993262 CATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCAC
388 CATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCAC
14993327 ATAATTATTCACATTAAGCACCGATAA
453 ATAATTATTCACATTAAGCACCGATAA
* *
14993354 CAACTTCATAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAAAGC
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGC
* * *
14993419 ACCTAAAAATGTATCTAAAAGCAAATAATTATGAAACACAGCGAAAAATTAAAATCGTGCGATAT
66 ACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAA
* * * * *
14993484 TTGTGCGAATGGTTTTTATGCCCAAAATTGTTCA-AAACCAAAAGTCTGATG-TTTTAAACTTCG
131 TCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-C-AAAGTCTGATGTTTTTAAGCTGCA
* * * * ** * * * *
14993547 AAATCCTTTAGAACCTACACTTAACACCATGAAAAACAACAAGAAAATTAAAATCATGCGAAAAT
194 AAATCCTTTATAACTTTCACTTAACA-C-T-----ACGA-AA-ATTATTAAAACCA-ACGCAAGT
* *** * * * *** **
14993612 TGTT--CGAATGTTTTTTATGCCCAGAAT-TGTTCGAAAACAAAGTAT-GATATTTTGAGCTTCA
249 T-TTACCG-A-GTTTCTT-TG-TTTGAGTGAGTT-TAAAAC--A-T-TGGAT-TCAAGATATTC-
*** ** * * * ** *
14993673 AAATCCTTTCTAAGTTTCTTTGTTTGAGCAA-GT-TTAAAACATTGGATTCAAGATTTTGAAA--
302 AAA-----T-TAA-TTTC--CACTT-AAAAACCTGCTAAAACAATGCTTTC-ATATTTT-AAAGC
* * * * * * ** * * ** * *** * *
14993734 TTCATTTCCATTTAAAAACCTGCT-AAAACAATGCTTTCCTATTT-TAAAGC-TTCA--C-TCCA
355 TTGA-CTCCAGTGAAAATCATTTTCACAGCAAAAC-ATAAAATTTCAAAAGCATT-AGGCTTCGA
**** ** * * ** * *
14993793 GTGAAAATCGTTTTCAAA--GC-AAAACATAAAATTTCAAAAAGCATTAGGCTTCGAGTACTCCC
417 GTG-CTCCCCCTGT-AAACTGCTAAAAC----AGTTT--AGCA-CA-TA--ATT--A-T--TCAC
* * *
14993855 CTGTAA--ACTGGTAGA
465 AT-TAAGCACCGATA-A
* ** *
14993870 AAGCACAAAACGATATCCAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
1 CA--AC-TT--------C-A---CA--AATAATATCCAAATATGAAGATCATTCATATGTAATTC
14993935 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
49 CTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAGCAAATAAGTATGAAACGCAGCGAAAA
14994000 ATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTG
113 ATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTG
*
14994065 ATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATGAAAACCAAC
178 ATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAAC
* * *
14994130 GCAAGTTTTGCCGAGTTTCTTTGTTTGAGTGAGCTTAAAACATTGGATTCGAGATATTCAAATTA
243 GCAAGTTTTACCGAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTA
*
14994195 ATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATC
308 ATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATC
* *
14994260 ATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCT
373 ATTTTCACAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCT
14994325 AAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
438 AAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
* *
14994367 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGC
14994432 ACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATA
66 ACCTAAAAATGTATCT-AAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATA
14994497 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
130 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
* *
14994562 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAGTT
195 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTT
*
14994627 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACC
260 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAACC
* *
14994692 TGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
325 TGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAACA
*
14994757 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACAT
390 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCACAT
14994822 AATTATTCACATTAAGCACCGATAA
455 AATTATTCACATTAAGCACCGATAA
* *
14994847 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGC
*
14994912 ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATA
66 ACCTAAAAATGTATCT-AAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATA
14994977 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
130 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
14995042 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTT
195 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTT
*
14995107 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACC
260 TCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAACC
* *
14995172 TGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
325 TGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAACA
*
14995237 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACAT
390 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCACAT
* ***
14995302 AATTATTCACA-TCAGGTGCGAGTAA
455 AATTATTCACATTAAGCACCGA-TAA
* * * *
14995327 CAACTTCACAAATAATATCCAAATATCAAGATCATTTACATGTAA-T-CTCACAAGTTCCTTAGA
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCA-AA-ATCCTTAGA
* * * * *
14995390 GCACCTTAAAATGTATCTAAAAGCCAATAAGTATGAAACACAACGAAAAATTCAAAT-GTTGC-A
64 GCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCG-TGCGA
*
14995453 -AA-------AATGGTTTTTATG-CCACAATT-TT--GAAATTTTGCAAATGGTTTTTTCTGCCC
128 TAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-----CAAA--G-----TCTG---
** * ** * *
14995506 AAAATTGTTCAAAAATG--AAATCGGATGTTTTAAGC-TTCAAAATCCTTTATA-ACTTAC-ACT
178 -ATGTT-TT-TAAGCTGCAAAATC--CT-TTATAA-CTTTC---A--C-TTA-ACAC-TACGA--
* * * * * * **
14995566 TAACACTGTAAAATTAAAACCAATGTAAGTTTTACAGA-TGTT-TGTATTTCAGCAAGTTTAAAA
226 -AA-A-T-T---ATTAAAACCAACGCAAGTTTTACCGAGT-TTCTTTGTTTGAGTGAGTTTAAAA
* * * * *
14995629 CATCGGATTCAAGATATTTAAA-TACATTTCC-GTTAAAAGAACATGCTAAAACAATGCTTTCGT
283 CATTGGATTCAAGATATTCAAATTA-ATTTCCACTT-AAA-AACCTGCTAAAACAATGCTTTCAT
*
14995692 ATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATAAAA-TTCTAAAAGCATTA
345 ATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAACATAAAATTTC-AAAAGCATTA
* * * * * * * * * *
14995756 -GCCTCGATTGCT-CCCTTATAAACTGCTAAAATAATTTAGCACACAATCAATCACATCAAGCAC
409 GGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCAC
*
14995819 CAATAA
474 CGATAA
*
14995825 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTC-AACTCCTTAGAG-
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGC
** * * *
14995888 AGCCTAAATTTGTATCTAAAAGAAAATAAGTATGAACACG-A-TGAAAAATTAAAATCGTGCAAT
66 A-CCTAAAAATGTATCTAAAAGCAAATAAGTATGAA-ACGCAGCGAAAAATTAAAATCGTGCGAT
* * * *
14995951 AATTGTGCGAATGGTTTTTCTGCCCAGAATTGTTTAGAAACAAAGTATGATG-TTTTAAGCTGCA
129 AATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCA
** * * * *
14996015 AAATCCTTCGTAACTTTCGCTTAACACTATGAAAA--ATTAAAACCAACGCATGTTTTACCAAGT
194 AAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGT
** * * *
14996078 TTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAAC
259 TTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAAC
* * *
14996143 CTGCTAAAACAACGCTTTCTTATTTTAAAGCTTGACTCCAGTGAAAATCGTTTTCACAGCAAAAC
324 CTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAAC
* * *
14996208 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCACCCTGTAAACTGGT-AGA-A----AGCACA
389 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCACA
*
14996267 T-A--A--CA-A-T--------AT-C
454 TAATTATTCACATTAAGCACCGATAA
* * ** * *
14996277 CAACTTGACAAATAATATCGAAATATGAATTTCATTCATATGCAATTCCT-AACCATCCTTAGAG
1 CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAA-AATCCTTAGAG
* * *
14996341 CACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAC-GATGAAAAATTAAAATCGTGCAAT
65 CACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACGCAG-CGAAAAATTAAAATCGTGCGAT
* * *
14996405 AATTGTGCGAATGTTTTTTATGCCCAGAATTGTTTAGAAACAAAGTCTGATGTTTTT-AGCTGCA
129 AATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCA
* * * * * *
14996469 AAATCCTTTATAACTTTCGCTTAACAGTATGAAAA--ACTAAAACCAACGGAAGTTTTACCAAGT
194 AAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGT
* * *
14996532 TTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTGAAATTTATTTCCATTTAAAAAC
259 TTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAAC
* * * * *
14996597 CTGCTAAAACAATGCTTTCTTATTTTAAAGCTTGACTCTAATGAAAATCGTTTTCAAAGCAAAAC
324 CTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAAC
* *
14996662 ATAAAATTTCAAAAGCATTAGGCTTCTAGTGCTCCCTCTGTAAACTG
389 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTG
14996709 GTAGAATGCA
Statistics
Matches: 2853, Mismatches: 317, Indels: 396
0.80 0.09 0.11
Matches are distributed among these distances:
452 48 0.02
453 42 0.01
454 301 0.11
455 4 0.00
462 1 0.00
463 2 0.00
465 1 0.00
466 4 0.00
467 1 0.00
468 8 0.00
469 7 0.00
470 13 0.00
471 4 0.00
472 103 0.04
473 63 0.02
474 14 0.00
477 5 0.00
478 119 0.04
479 59 0.02
480 1078 0.38
481 2 0.00
482 12 0.00
483 8 0.00
484 6 0.00
485 12 0.00
486 4 0.00
487 11 0.00
488 9 0.00
489 15 0.01
490 11 0.00
491 16 0.01
492 10 0.00
493 2 0.00
494 6 0.00
495 10 0.00
496 23 0.01
497 51 0.02
498 95 0.03
499 64 0.02
500 108 0.04
501 6 0.00
502 14 0.00
503 8 0.00
504 22 0.01
505 36 0.01
506 38 0.01
507 33 0.01
508 32 0.01
509 14 0.00
510 7 0.00
511 11 0.00
512 5 0.00
513 1 0.00
514 1 0.00
515 5 0.00
516 9 0.00
517 10 0.00
518 6 0.00
519 1 0.00
521 8 0.00
522 4 0.00
523 8 0.00
524 7 0.00
525 11 0.00
526 2 0.00
527 4 0.00
528 1 0.00
531 1 0.00
532 1 0.00
533 81 0.03
534 111 0.04
535 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (479 bp):
CAACTTCACAAATAATATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGC
ACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAA
TCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAA
ATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTT
CTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTAATTTCCACTTAAAAACCT
GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGCAAAACAT
AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTAAACTGCTAAAACAGTTTAGCACATA
ATTATTCACATTAAGCACCGATAA
Found at i:14996908 original size:200 final size:200
Alignment explanation
Indices: 14996547--14996908 Score: 557
Period size: 200 Copynumber: 1.8 Consensus size: 200
14996537 TGTTTGAGTG
* * *
14996547 AGTTTAAAACATTGGATTCAAGATATTGAAATTTATTTCCATTTAAAAACCTGCTAAAACAATGC
1 AGTTTAAAACATCGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGC
* * *
14996612 TTTCTTATTTTAAAGCTTGACTCTAATGAAAATCGTTTTCAAAGCAAAACATAAAATTTCAAAAG
66 TTTCATATTTTAAAGCTTGACTCCAATGAAAATCATTTTCAAAGCAAAACATAAAATTTCAAAAG
* *
14996677 CATTAGGCTTCTAGTGCTCCCTCTGTAAACTGGTAGAATGCAAGTTTTATCATGTTTTTTTATTT
131 CATTAGGCTTCGAGTGCTCCCTCTATAAACTGGTAGAATGCAAGTTTTATCATGTTTTTTTATTT
14996742 TAGCA
196 TAGCA
* * * *
14996747 AGTTTAAAACATCGTATTCAAGATATTCAAATTCGTTTTCGTTTAAAAACCTGCTAAAACAATGC
1 AGTTTAAAACATCGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGC
* * *
14996812 TTTCATATTTTAAAGCTTTACTCCAGTGAAAATCATTTTCAAGGCAAAACATAAAATTAT-AAAA
66 TTTCATATTTTAAAGCTTGACTCCAATGAAAATCATTTTCAAAGCAAAACATAAAATT-TCAAAA
14996876 GCATTAGGCTTCGAGTGCTCCC-CTTATAAACTG
130 GCATTAGGCTTCGAGTGCTCCCTC-TATAAACTG
14996909 CTAAAATAAT
Statistics
Matches: 145, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
199 1 0.01
200 143 0.99
201 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (200 bp):
AGTTTAAAACATCGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGC
TTTCATATTTTAAAGCTTGACTCCAATGAAAATCATTTTCAAAGCAAAACATAAAATTTCAAAAG
CATTAGGCTTCGAGTGCTCCCTCTATAAACTGGTAGAATGCAAGTTTTATCATGTTTTTTTATTT
TAGCA
Found at i:14999867 original size:480 final size:480
Alignment explanation
Indices: 14998645--15005096 Score: 5404
Period size: 480 Copynumber: 13.2 Consensus size: 480
14998635 AAATTTTGCA
* * * * * *
14998645 AATGGTTTTTTCTGCCCAAAATTGTTCAAAAATGAAA-TCGGATG-TTTTAAGCTTCAAAATCCT
1 AATGG-TTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
* ** * * * *
14998708 TTATAACTTACACTTAACACTGTGAAAA--ATTAAAACCAATGTAAGTTTTA-CAATGTTTTTTT
64 TTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGA-GTTTCTTT
* * ** * * ** **
14998770 ATTTCAGCAAGTTTAAAACATCGGATTCAAGATATTCAAA-TACATTTCCGTTTAAAAATATGCT
128 GTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTA-ATTTCCACTTAAAAACCTGCT
* * * *
14998834 AAAACAATGCTTTCGTATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATAAA
192 AAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAA
* * * * * * *
14998899 A-TTCTAAAAGAATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAATAATTTAGCACACAAT
257 ATTTC-AAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAAT
* * * * *
14998963 TGA-TCACATCAAGCACCAATAACAACTTCACAAATAATATTCAAATATGAAGATCATTCATATG
321 T-ATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATG
* * ** * * *
14999027 TAGTTCCTC-AACTCCTTAGAGCACCTAAATTTGTATCT-AAAAGAAAATAAGTATG-AACACAA
385 TAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAG
* * * *
14999089 TGAAAAATTAAAATCTTGCAATAATTGTGCG
450 CGAAAAATTAAAATCGTGCGATAATCGTGCG
*
14999120 AATGGTTTTTATGCCCAGAAATGTTCAGAAA-AAAGTCTGATG-TTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
* * * *
14999183 ATAACTTTCGC-TAACACTATG-AAA--ACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG-T
** * * * * *
14999244 TTGAGCAAGTTTAAAACCTTGGATTCAAGAATTTTCAAATTCATTTTCCATTTAAAAACCTGCTA
130 TTGAGTGAGTTTAAAACATTGGATTCGAG-ATATTCAAATT-AATTTCCACTTAAAAACCTGCTA
14999309 AAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAA
193 AAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAA
14999374 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTA
258 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTA
14999439 TTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAA
323 TTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAA
14999504 TTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGA
388 TTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGA
14999569 AAAATTAAAATCGTGCGATAATCGTGCG
453 AAAATTAAAATCGTGCGATAATCGTGCG
14999597 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
* *
14999662 ATAACTTTCACTTAACACTACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
14999727 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
14999792 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
14999857 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
14999922 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
*
14999987 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
15000052 ATTAAAATCGTGCGATAATCGTGCG
456 ATTAAAATCGTGCGATAATCGTGCG
15000077 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
15000142 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
15000207 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
*
15000272 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCGCAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
15000337 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
15000402 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
*
15000467 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
15000532 ATTAAAATCGTGCGATAATCGTGCG
456 ATTAAAATCGTGCGATAATCGTGCG
15000557 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
15000622 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
15000687 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
*
15000752 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
* * * * *
15000817 CAAAAGCATTAGGCTTCGAGTGCT-CCCTTATAAACTGCTAAAACAATTTAGCACACAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
* *
15000881 ACATTAAGCA-C-ATAACAAC-TCATAAATAATATCCAAATATGAAGATCATTCATATATAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
* * *
15000943 CTC-AAATCCTGTAGAGCACCT-AAAATGTATCT-AAAAGCATATAAGCATGAAACACAGCGAAA
391 CTCAAAATCCT-TAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAA
* *
15001005 AATTTTAAAATCGTGCAATAATTGTGCG
455 AA--TTAAAATCGTGCGATAATCGTGCG
* * * *
15001033 AA-GGTTTTTTATGCCCAGAATTG-TCA-AAACCAAAGTCTGATGTTTTAAAACTTCGAAATCCT
1 AATGG-TTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
* ** ** * * *
15001095 TTATAACTTACACTTAACACCATGAAAACAACAAAATTAAAATC-ACGCGAAAATTGTT--CGAA
64 TTATAACTTTCACTTAACA-C-T-ACGA-AA-ATTATTAAAACCAACGC--AAGTT-TTACCGAG
* *** * * * * * *
15001157 TATTTTTATGCCCAGAAT-TGTTCGAAACAAAGTCTGATATTTTGAG-T-TTCAAAATCCTTTCT
121 T-TTCTT-TG-TTTGAGTGAGTT-TAAA-ACA-T-TG-GA-TTCGAGATATTC-AAA-----T-T
* * * * ** * *** ** * * *
15001219 AAAGTTACTCTT-AAAACAGTGGAAAAATGAAAAAC--CA-ATGCT--AGTTTTA--CC-TTG--
170 -AATTTCCACTTAAAAAC-CTGCTAAAA-CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAA
** * * *** * ** * **
15001273 TTTCATTGTTTGAGCAGGTTTAAAACGTTCGA-TTCAATAG-ATT-GAAATTC-A-T--TTCCAT
232 AATCA-T-TTTCA-CAGG---AAAACATAAAATTTCAAAAGCATTAG-GCTTCGAGTGCTCCCCC
*** * * ** * * * * **
15001331 TCAAAAACCTTCTAAAACAATGCTTT-CCTATTTTAAAGCTT-TACACTAGTGAA-AACCGTTTT
290 T-GTGAA-CTGCTAAAAC-A-G-TTTAGC-A-CAT-AA--TTATTCAC-A-TTAAGCACCGATAA
** * * * * * * * *** **
15001393 CAA-AGCAAAACATAAAATTTCAAAAGTAT-TAG-GC-TTCGA-GTGCT-CCCCCTGTAAA--CT
343 CAACTTCATAA-AT--AATATCCAAA-TATGAAGATCACTC-ATATG-TAATTCCTCAAAATCCT
* * ** * * * *
15001450 GGTAGAAAGCACAC-AACAA--TATCCAACTTCA-CAAATAA-CATCCAAA--TA-TG---AATT
402 --TAG--AGCAC-CTAAAAATGTATCTAA--AAAGCAAATAAGTAT-GAAACGCAGCGAAAAATT
** * ** * *
15001504 TCAATCATATG-TAAT--TCCT
459 AAAATCGTGCGATAATCGTGCG
*** ** * * * * * * * ** *
15001523 AAACATCCTTAGAGCACCTAAAAATGTATCTA-AAAGCAAA---T-AAGTATTAAACACAACGAA
1 AATGGTTTTTA-TGC-CC-AGAATTGT-TC-AGAAA-CAAAGTCTGATGTTTTTAA-GCTGCAAA
* * * * * *** * ** * ** * *
15001583 AT--ATTAAAATCGTGCA-ATAATTGTGCGAATGGTT-TTTACGCCCA-G-AATTTTTCGGAAAC
59 ATCCTTTATAA-CTTTCACTTAACACTACGAA-AATTATTAAAACCAACGCAAGTTTT-----AC
** * * * * * * * * * * *
15001642 AAAG--TCTGATGTTTTAAGCTGCAAAATCCTTTATAACTTTCGCTT-AACACTATGTAAAACTA
117 CGAGTTTCT-TTG-TTTGAG-TG----A--GTTTAAAACATTGGATTCGAGA-TAT-TCAAATTA
** ** * * * * ** ** * * ** * * *
15001704 A-AACCAAC--GCAAGCTTTACCAAGTTTCTTTG-TTTGAGTGGGTTTAAAACATTGGATTCAAG
171 ATTTCC-ACTTAAAAAC-CTGCTAA--AACAATGCCTTCA-T-ATTTTAAAGC-TT-GACTCCAG
* * * ** ** **
15001765 AT-ATTCAAATTCATTTCCATTCA--AAAACTAGCTAAAA---C-AATGCTTTTA-TATTTTAAA
228 -TGA---AAA-TCATTTTCA--CAGGAAAAC-A--TAAAATTTCAAAAGC-ATTAGGCTTCGAGT
* * * * * ** *
15001822 GCTTCACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTACGCTTCGAG
282 GC-TC-CCCCTGTG--AA-C---TGC----TAAAAC----AGTTT-AGCA-CA-TA--ATT--A-
* * * * * * * * * ** * *
15001887 TGCTCCCCTTATA-AACTGCTAAAACAATTTAGCACACAATTAT-TCACATTAAGCACCAATAAC
323 T--TCACATTA-AGCAC--CGATAACAACTT--CATA-AATAATATC-CA--AA-TATGAAGATC
** * * * ** * * * **
15001950 AACTTCATAAATAATAT-C-C-AAAT-ATGA-AG-ATCATTCATATGTAATTCCTCAAAATC-CT
376 -AC-TCATATGTAAT-TCCTCAAAATCCTTAGAGCA-CCTAAAAATGT-A-T-CTAAAAAGCAAA
* * * * * * *** ** **
15002008 TAAAGCACCTAAAAATGTATCTAAAAGCAAATAAT--TATGA-AA-CACAGCG
434 T-AAGTA--T-GAAACGCAGCGAAAAATTAA-AATCGTGCGATAATC-GTGCG
*** *** ** * ** * * * *
15002057 AAAAATTAAAATCGTGC-GATATTTGTGC-G--A-ATGGTTTTTATGCCCAAAATTGTTCAAAAC
1 AATGGTTTTTAT-GCCCAGA-A-TTGTTCAGAAACAAAG-TCTGATG-----T-TT-TT--AAGC
* * * ** *
15002117 --CAAAAGTCTGATGTTTTAAAC-TTCGAAATCCTTCATA-ACTTAC-ACTTAACACCATGAAAA
53 TGCAAAA-TC--CT-TTAT-AACTTTC-AC----TT-A-ACAC-TACGA---AA-ATTATTAAAA
* * * ** * ***** * * ** ** * * *
15002177 ACAACAAGAAAATTAAAATC-ATGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTG-TTCG
101 CCAAC--GCAAGTT-TTACCGA-G-TTTCTTTGTTTGAGTG-AGTTTA---AAACATTGGATTCG
* * ** * * ** ** * *
15002240 -G-CA-GCAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAAGTTTCTTTG-TTTGAGCA-AG
157 AGATATTCAAA-T-T-A-ATTTCCA-CTT-AAAAACC-TGCTAA--AACAATGCCTT---CATAT
* * * * * **** *
15002300 TTTAAAACATTGGATTCAAGATTTTGAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGCTT
210 TTTAAAGC-TT-GACTCCAG----TGAAAATCATTTTCACAGGAAAA----C-ATAA-AA---TT
* **** ** * * * *
15002365 TCCTATTTTAAAGC-TTCA--C-TCCAGTGAAAATCATTTTCAA-AGC-AAAACATAAAATTTCA
260 T-C-A----AAAGCATT-AGGCTTCGAGTG-CTCCCCCTGTGAACTGCTAAAAC----AGTTT--
** * * * * * * **
15002424 AAAAGCATTAGGCTTCGAGTACTCCCCCTGTAA--ACTGGTAGA-AAGC-ACA-AAACGATATCC
311 AGCA-CA-TA--ATT--A-T--T-CACAT-TAAGCACCGATA-ACAA-CTTCATAAATAATATCC
* * * * *
15002484 AACT-TCACAAATAATATCCAAATATG-AATTTCATTCATATGTAATTCCTAAACATCCTTAGAG
363 AAATATGA-AGATCA-CT-C--ATATGTAA-TTC---C---------T-C-AAA-ATCCTTAGAG
* * * * *
15002547 CACCTAAAAATGTATCT-AAAACCAAATAAGTATGAAACACAACGAAATATTAAAATCGTGCAAT
407 CACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGAT
*
15002611 AATTGTGCG
472 AATCGTGCG
*
15002620 AATGGTTTTTATGCCTAGAATTGTTCAGAAACAAAGTCTGATG-TTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
* * * * *
15002684 ATAACTTTCGCTTAACACTATGAAAA--ACTAAAACCAACGCAAGTTTTACCAAGTTTCATTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
* * * *
15002747 TGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
*
15002812 CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
15002877 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
15002942 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
*
15003007 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
15003072 ATTAAAATCGTGCGATAATCGTGCG
456 ATTAAAATCGTGCGATAATCGTGCG
15003097 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
* *
15003162 ATAACTTTCACTTAACACTACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
*
15003227 TGAGTGAGCTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
15003292 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
15003357 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
15003422 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
*
15003487 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
15003552 ATTAAAATCGTGCGATAATCGTGCG
456 ATTAAAATCGTGCGATAATCGTGCG
15003577 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
15003642 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
15003707 T-AGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
15003771 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
15003836 CAAAAGCATTAGGCTTCGAGTGCTCCCCCT-TGAACTGCTAAAACAGTTTAGCACATAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
15003900 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
*
15003965 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAAGCAAATAAGTACGAAACGCAGCGAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAAGCAAATAAGTATGAAACGCAGCGAAA
15004030 AATTAAAATCGTGCGATAATCGTGCG
455 AATTAAAATCGTGCGATAATCGTGCG
15004056 AATGGTTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTT
1 AATGG-TTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTT
15004121 TATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAG-TTTACCGAGTTTCTTTGT
65 TATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGT
15004185 TTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAA
130 TTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAA
15004250 ACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATT
195 ACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATT
15004315 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATT
260 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATT
15004380 CACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATT
325 CACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATT
*
15004445 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGC-AAA
390 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAA
15004509 AATTAAAATCGTGCGATAATCGTGCG
455 AATTAAAATCGTGCGATAATCGTGCG
15004535 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
* *
15004600 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGTTTCATTGTT
66 ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
* * * *
15004665 TGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAA
131 TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
* *
15004730 CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATTT
196 CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
* * * * *
15004795 CAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTATTC
261 CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
* *
15004860 ACATTAAGCACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCATTCATATGTAATTC
326 ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
* * *
15004925 CTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAGCATATAAGCATGAAACACAGCGAAAA
391 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
* *
15004989 ATTAAAATCGTGCAATAATTGTGCG
456 ATTAAAATCGTGCGATAATCGTGCG
* * *
15005014 AATGGTTTTTATGCCCAGAATTGTTCA-AAACCAAAAGTCTGATG-TTTTAAACTTCGAAATCCT
1 AATGGTTTTTATGCCCAGAATTGTTCAGAAA-C-AAAGTCTGATGTTTTTAAGCTGCAAAATCCT
*
15005077 TTATAACTTACACTTAACAC
64 TTATAACTTTCACTTAACAC
15005097 CATGAAAAAC
Statistics
Matches: 4960, Mismatches: 626, Indels: 778
0.78 0.10 0.12
Matches are distributed among these distances:
471 29 0.01
472 42 0.01
473 44 0.01
474 250 0.05
475 104 0.02
476 140 0.03
477 165 0.03
478 322 0.06
479 743 0.15
480 1895 0.38
481 153 0.03
482 42 0.01
483 44 0.01
484 4 0.00
485 5 0.00
486 20 0.00
487 21 0.00
488 25 0.01
489 11 0.00
490 28 0.01
491 32 0.01
492 28 0.01
493 40 0.01
494 38 0.01
495 32 0.01
496 18 0.00
497 13 0.00
498 17 0.00
499 16 0.00
500 23 0.00
501 19 0.00
502 6 0.00
503 2 0.00
505 13 0.00
506 2 0.00
507 6 0.00
508 8 0.00
509 11 0.00
510 4 0.00
511 7 0.00
512 3 0.00
514 2 0.00
515 6 0.00
516 5 0.00
517 2 0.00
518 6 0.00
519 4 0.00
520 21 0.00
521 9 0.00
522 3 0.00
523 5 0.00
524 13 0.00
525 11 0.00
526 11 0.00
527 8 0.00
528 3 0.00
529 7 0.00
530 6 0.00
531 4 0.00
532 19 0.00
533 8 0.00
534 13 0.00
535 6 0.00
536 14 0.00
537 3 0.00
538 11 0.00
539 2 0.00
540 11 0.00
541 2 0.00
542 1 0.00
543 4 0.00
544 4 0.00
545 5 0.00
546 8 0.00
547 8 0.00
548 4 0.00
549 11 0.00
550 9 0.00
551 13 0.00
552 13 0.00
553 3 0.00
554 14 0.00
555 73 0.01
556 34 0.01
557 11 0.00
558 10 0.00
559 4 0.00
560 4 0.00
561 15 0.00
562 6 0.00
563 14 0.00
564 15 0.00
565 10 0.00
566 3 0.00
567 4 0.00
568 12 0.00
569 3 0.00
570 1 0.00
571 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (480 bp):
AATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTT
ATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTT
TGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAA
CAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
CAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTC
ACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTC
CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGCGAAAA
ATTAAAATCGTGCGATAATCGTGCG
Found at i:15000592 original size:960 final size:960
Alignment explanation
Indices: 14998140--15005096 Score: 6054
Period size: 960 Copynumber: 7.1 Consensus size: 960
14998130 GAAAATTGTT
* * * * *
14998140 CGAATGTTTTTTATGCCCAGAATTGTTC-GAAAACAAAGTCTGAT-ATTTTGAGTTTCAAAATCC
1 CGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGTTTTTAAGCTGCAAAATCC
* * * ** * * ** *
14998203 TTTCTAAGTTACACTTAAAACTGTGAAAA-AATTAAAAACCAAAGCTAGTTTTACCTTGTTTCAT
65 TTTATAACTTACACTTAACACTACGAAAATAATT-AAAACCAACGCAAGTTTTACCGAGTTTCTT
* * * * * * * ** * *
14998267 TGTTTGAG-CAGGTTTAAAACGTTCGATTCAATAGATTCAAATTCATTTTTATTTAAAAACCTTC
129 TGTTTGAGTGA-GTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGC
*** * * ** * * *
14998331 TAAAACAATTTTTTGATATTTTAAAGCTGGACTATAG-GAAAAATCATATTCAAAGAAAAACATA
193 TAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTG-AAAATCATTTTCACAGGAAAACATA
* ** ** * * * **
14998395 AAATTTCAAAAGAATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAG-TTAGCAGACC
257 AAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAAC-AGTTTAGCACATA
* * * *** * * * * *
14998459 ACTAATCACA-TCAGGTGCGAGTAACAACTTCACAAATAATATCCAAATATCAAGATCATTTACA
321 ATTATTCACATTAAGCACCGA-TAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
* * * *
14998523 TGTAA-T-CTCACAAGTTCCTTAGAGCACCTTAAAATGTATCT-AAAAGCCAATAAGTATGAAAC
385 TGTAATTCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAAC
* * * * *
14998585 ACAACGAAAAATTCAAAT-GTTGCAAAAATGGTTTTTATGCCACAATTTTGAAATTTTGCAAATG
448 GCAGCGAAAAATTAAAATCG-TGC-------G-----AT-----AA--TCG------TGCGAATG
* * * * * *
14998649 GTTTTTTCTGCCCAAAATTGTTCAAAAATGAAA-TCGGATG-TTTTAAGCTTCAAAATCCTTTAT
487 G-TTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTAT
* ** * * * *
14998712 AACTTACACTTAACACTGTGAAAA--ATTAAAACCAATGTAAGTTTTA-CAATGTTTTTTTATTT
550 AACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAA-GTTTCTTTGTTT
* ** * ** **
14998774 CAGCAAGTTTAAAACATCGGATTCAAGATATTCAAA-TACATTTCCGTTTAAAAATATGCTAAAA
614 GAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTA-ATTTCCACTTAAAAACCTGCTAAAA
* * *
14998838 CAATGCTTTCGTATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATAAAA-TT
678 CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTT
* * * * *
14998902 CTAAAAGAATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAATAATTTAGCACACAATTGA-
743 C-AAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTGCTAAAACAATTTAGCACATAATT-AT
* * * * * *
14998966 TCACATCAAGCACCAATAACAACTTCACAAATAATATTCAAATATGAAGATCATTCATATGTAGT
806 TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
* ** * * **
14999031 TCCTC-AACTCCTTAGAGCACCTAAATTTGTATCT-AAAAGAAAATAAGTATG-AACACAATGAA
871 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACACAGCGAA
* * *
14999093 AAATTAAAATCTTGCAATAATTGTG
936 AAATTAAAATCGTGCGATAATCGTG
*
14999118 CGAATGGTTTTTATGCCCAGAAATGTTCAGAAA-AAAGTCTGATG-TTTTAAGCTGCAAAATCCT
1 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
* * * * *
14999181 TTATAACTTTCGC-TAACACTATG--AA-AACTAAAACCAACGCAAGTTTTACCAAGTTTCTTTG
66 TTATAACTTACACTTAACACTACGAAAATAATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG
** * * * * *
14999242 TTTTGAGCAAGTTTAAAACCTTGGATTCAAGAATTTTCAAATTCATTTTCCATTTAAAAACCTGC
131 -TTTGAGTGAGTTTAAAACATTGGATTCGAG-ATATTCAAATT-AATTTCCACTTAAAAACCTGC
14999307 TAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAA
193 TAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAA
14999372 AATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAAT
258 AATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAAT
14999437 TATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGT
323 TATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGT
*
14999502 AATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTATGAAACGCAGC
388 AATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGC
14999567 GAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAA
453 GAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAA
*
14999632 GTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATGAAAA
518 GTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAA
* * *
14999697 CCAACGCAAGTTTTGCCGAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCA
583 CCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCA
*
14999762 AATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGA
648 AATTAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGA
*
14999827 AAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAA
713 AAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAA
*
14999892 CTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATAT
778 CTGCTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATAT
14999957 CCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAA
843 CCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAA
*
15000022 AAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCGTG
908 AAAGCAAATAAGTACGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTG
15000075 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
1 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
* *
15000140 TTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG
66 TTATAACTTACACTTAACACTACGAAAATAATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG
15000205 TTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAA
131 TTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAA
*
15000270 AACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCGCAGGAAAACATAAAAT
196 AACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAAT
15000335 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTAT
261 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTAT
15000400 TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
326 TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
15000465 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAA
391 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAA
15000530 AAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTC
456 AAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTC
15000595 TGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCA
521 TGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCA
* *
15000660 ACGCAAGTTTTACCGAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAAT
586 ACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAAT
*
15000725 TAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAA
651 TAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAA
* * *
15000790 TCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCT-CCCTTATAAACTG
716 TCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTG
*
15000854 CTAAAACAATTTAGCACACAATTATTCACATTAAGCA-C-ATAACAAC-TCATAAATAATATCCA
781 CTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCA
* *
15000916 AATATGAAGATCATTCATATATAATTCCTC-AAATCCTGTAGAGCACCT-AAAATGTATCT-AAA
846 AATATGAAGATCACTCATATGTAATTCCTCAAAATCCT-TAGAGCACCTAAAAATGTATCTAAAA
* * * * *
15000978 AGCATATAAGCATGAAACACAGCGAAAAATTTTAAAATCGTGCAATAATTGTG
910 AGCAAATAAGTACGAAACACAGCGAAAAA--TTAAAATCGTGCGATAATCGTG
* * * *
15001031 CGAA-GGTTTTTTATGCCCAGAATTG-TCA-AAACCAAAGTCTGATGTTTTAAAACTTCGAAATC
1 CGAATGG-TTTTTATGCCCAGAATTGTTCAGAAA-CAAAGTCTGATGTTTTTAAGCTGCAAAATC
** * * *
15001093 CTTTATAACTTACACTTAACACCATGAAAACAACAAAATTAAAATC-ACGCGAAAATTGTT--CG
64 CTTTATAACTTACACTTAACA-C-T-ACGA-AA-ATAATTAAAACCAACGC--AAGTT-TTACCG
* * *** * * * * * *
15001155 AATATTTTTATGCCCAGAAT-TGTTCGAAACAAAGTCTGATATTTTGAG-T-TTCAAAATCCTTT
121 AGT-TTCTT-TG-TTTGAGTGAGTT-TAAA-ACA-T-TG-GA-TTCGAGATATTC-AAA-----T
* * * * ** * *** ** * * *
15001217 CTAAAGTTACTCTT-AAAACAGTGGAAAAATGAAAAAC--CA-ATGCT--AGTTTTA--CC-TTG
171 -T-AATTTCCACTTAAAAAC-CTGCTAAAA-CAATGCCTTCATATTTTAAAGCTTGACTCCAGTG
** * * *** * ** *
15001273 --TTTCATTGTTTGAGCAGGTTTAAAACGTTCGA-TTCAATAG-ATT-GAAATTC-A-T--TTCC
232 AAAATCA-T-TTTCA-CAGG---AAAACATAAAATTTCAAAAGCATTAG-GCTTCGAGTGCTCCC
** *** * * ** * * * *
15001329 ATTCAAAAACCTTCTAAAACAATGCTTT-CCTATTTTAAAGCTT-TACACTAGTGAA-AACCGTT
290 CCT-GTGAA-CTGCTAAAAC-A-G-TTTAGC-A-CAT-AA--TTATTCAC-A-TTAAGCACCGAT
** ** * * * * * * * *** **
15001391 TTCAA-AGCAAAACATAAAATTTCAAAAGTAT-TAG-GC-TTCGA-GTGCT-CCCCCTGTAAA--
343 AACAACTTCATAA-AT--AATATCCAAA-TATGAAGATCACTC-ATATG-TAATTCCTCAAAATC
* * ** * * * *
15001448 CTGGTAGAAAGCACAC-AACAA--TATCCAACTTCA-CAAATAA-CATCCAAA--TA-TG---AA
402 CT--TAG--AGCAC-CTAAAAATGTATCTAA--AAAGCAAATAAGTA-CGAAACGCAGCGAAAAA
** * ** * * *** ** * * *
15001502 TTTCAATCATATG-TAAT--TCCTAAACATCCTTAGAGCACCTAAAAATGTATCTA-AAAGCAAA
459 TTAAAATCGTGCGATAATCGTGCGAATGGTTTTTA-TGC-CC-AGAATTGT-TC-AGAAA-CAAA
* * * * ** * * * * * * *** * ** *
15001563 ---T-AAGTATTAAACACAACGAAAT--ATTAAAATCGTGCA-ATAATTGTGCGAATGGTT-TTT
518 GTCTGATGTTTTTAA-GCTGCAAAATCCTTTATAA-CTTTCACTTAACACTACGAA-AATTATTA
** * * * * * * * *
15001620 ACGCCCA-G-AATTTTTCGGAAACAAAG--TCTGATGTTTTAAGCTGCAAAATCCTTTATAACTT
580 AAACCAACGCAAGTTTT-----ACCAAGTTTCT-TTG-TTTGAG-TG----A--GTTTAAAACAT
* * * * * ** ** * * * * ** ** *
15001681 TCGCTT-AACACTATGTAAAACTAA-AACCAAC--GCAAGCTTTACCAAGTTTCTTTG-TTTGAG
631 TGGATTCAAGA-TAT-TCAAATTAATTTCC-ACTTAAAAAC-CTGCTAA--AACAATGCTTTCA-
** * * * *
15001741 TGGGTTTAAAACATTGGATTCAAGAT-ATTCAAATTCATTTCCATTCA--AAAACTAGCTAAAA-
689 T-ATTTTAAAGC-TT-GACTCCAG-TGA---AAA-TCATTTTCA--CAGGAAAAC-A--TAAAAT
* * ** ** ** * * *
15001802 --C-AATGCTTTTA-TATTTTAAAGCTTCACTCC-AGTGAAAATCATTTTCAAAGGAAAACATAA
741 TTCAAAAGC-ATTAGGCTTCGAGTGC-TC-CCCCTA-TG--AA-C---TGC----TAAAAC----
** * * * * * * * *
15001862 AATTTCAAAAGCATTACGCTTCGAGTGCTCCCCTTATA-AACTGCTAAAACAATTTAGCACACAA
788 AATTT-AGCA-CA-TA--ATT--A-T--TCACATTA-AGCAC--CGATAACAACTT--CATA-AA
* * ** * * ** * *
15001926 TTAT-TCACATTAAGCACCAATAACAACTTCATAAATAATATCCAAAT-ATGAAGATCATTCATA
837 TAATATC-CA--AA-TATGAAGATC-AC-TCATATGTAAT-TCC---TCA--AA-ATCCTT-AGA
* * *
15001989 TGTAATTCCTCAAAATCCTTAAAGCACCTAAAAATGTATCT-AAAAGCAAATAATTATGAAACAC
888 -G-CA--CCT----A---------------AAAATGTATCTAAAAAGCAAATAAGTACGAAACAC
* *
15002053 AGCGAAAAATTAAAATCGTGCGATATTTGTG
930 AGCGAAAAATTAAAATCGTGCGATAATCGTG
* * * *
15002084 CGAATGGTTTTTATGCCCAAAATTGTTCA-AAACCAAAAGTCTGATG-TTTTAAACTTCGAAATC
1 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-C-AAAGTCTGATGTTTTTAAGCTGCAAAATC
* * * * * * *
15002147 CTTCATAACTTACACTTAACACCATGAAAAACAACAAGAAAATTAAAATCATGCGAAAATTGTT-
64 CTTTATAACTTACACTTAACA-C-T-----ACGA-AA-ATAATTAAAACCA-ACGCAAGTT-TTA
* * *** * * * **
15002211 -CGA--ATGTTT-TTT-A-T--G-CCCAGA-ATT-G-TTCG-G-CA-GCAAAGTCTGATATTTTG
118 CCGAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAA-T-T-A-ATTTCC
* * ** ** * * * * *
15002261 AGCTTCAAAATCCTTTCTAAGTTTCTTTG-TTTGAGCA-AGTTTAAAACATTGGATTCAAGATTT
179 A-CTT-AAAAACC-TGCTAA--AACAATGCCTT---CATATTTTAAAGC-TT-GACTCCAG----
* * **** *
15002324 TGAAATTCATTTCCATTTAAAAACCTGCTAAAACAATGCTTTCCTATTTTAAAGC-TTCA--C-T
230 TGAAAATCATTTTCACAGGAAAA----C-ATAA-AA---TTT-C-A----AAAGCATT-AGGCTT
* **** ** * * * * ** *
15002385 CCAGTGAAAATCATTTTCAA-AGC-AAAACATAAAATTTCAAAAAGCATTAGGCTTCGAGTACTC
279 CGAGTG-CTCCCCCTGTGAACTGCTAAAAC----AGTTT--AGCA-CA-TA--ATT--A-T--T-
* * * *
15002448 CCCCTGTAAACTGGTAGAAAGCACAAAACGATATCCAACTTCACAAATAATATCCAAATATGAAT
327 ---C---ACA-T--T---AAGCAC----CGATA-ACAACTTCATAAATAATATCCAAATATGAAG
* * *
15002513 TTCATTCATATGTAATTCCT-AAACATCCTTAGAGCACCTAAAAATGTATCT-AAAACCAAATAA
375 ATCACTCATATGTAATTCCTCAAA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAA
* * * * * * *
15002576 GTATGAAACACAACGAAATATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCTAGAAT
439 GTACGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAAT
* *
15002641 TGTTCAGAAACAAAGTCTGATG-TTTTAAGCTGCAAAATCCTTTATAACTTTCGCTTAACACTAT
504 TGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTAC
* *
15002705 GAAAA--ACTAAAACCAACGCAAGTTTTACCAAGTTTCATTGTTTGAGTGAGTTTAAAACATTGG
569 GAAAATTATTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGG
* * *
15002768 ATTCAAGATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAACAATGCTTTCATATTTTAAAG
634 ATTCAAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAG
15002833 CTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGT
699 CTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGT
* *
15002898 GCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAAC
764 GCTCCCCCTATGAACTGCTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAAC
15002963 TTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCT
829 TTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCT
*
15003028 AAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCG
894 AAAAATGTATCTAAAAAGCAAATAAGTACGAAACACAGCGAAAAATTAAAATCGTGCGATAATCG
15003093 TG
959 TG
15003095 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
1 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
* * * *
15003160 TTATAACTTTCACTTAACACTACGAAAATTATGAAAACCAACGCAAGTTTTGCCGAGTTTCTTTG
66 TTATAACTTACACTTAACACTACGAAAATAATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG
*
15003225 TTTGAGTGAGCTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAA
131 TTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAA
15003290 AACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAAT
196 AACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAAT
15003355 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTAT
261 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTAT
15003420 TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
326 TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
15003485 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAA
391 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAA
15003550 AAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTC
456 AAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTC
15003615 TGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCA
521 TGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCA
* *
15003680 ACGCAAGTTTTACCGAGTTTCTTTGTTT-AGTGAGTTTAAAACATTGGATTCGAGATATTCAAAT
586 ACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAAT
*
15003744 TAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAA
651 TAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAA
15003809 TCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCT-TGAACTG
716 TCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTG
*
15003873 CTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCA
781 CTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCA
15003938 AATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAA
846 AATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAA
*
15004003 AGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATAATCGTG
910 AGCAAATAAGTACGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTG
15004054 CGAATGGTTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCC
1 CGAATGG-TTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCC
* *
15004119 TTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAG-TTTACCGAGTTTCTTT
65 TTTATAACTTACACTTAACACTACGAAAATAATTAAAACCAACGCAAGTTTTACCGAGTTTCTTT
15004183 GTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTA
130 GTTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTA
15004248 AAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAA
195 AAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAA
15004313 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTA
260 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTA
15004378 TTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAA
325 TTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAA
15004443 TTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGC-A
390 TTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGA
15004507 AAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
455 AAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGT
15004572 CTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACC
520 CTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACC
*
15004637 AACGCAAGTTTTACCAAGTTTCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAA
585 AACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAA
* * *
15004702 TTCATTTCCATTTAAAAACCAGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAA
650 TTAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAA
* * *
15004767 ATCATTTTCAAAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACT
715 ATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACT
* *
15004832 GCTAAAACAATTTAGCACACAATTATTCACATTAAGCACCAATAACAACTTCATAAATAATATCC
780 GCTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCC
*
15004897 AAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAA
845 AAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAA
* * * * *
15004961 AGCATATAAGCATGAAACACAGCGAAAAATTAAAATCGTGCAATAATTGTG
910 AGCAAATAAGTACGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTG
* * *
15005012 CGAATGGTTTTTATGCCCAGAATTGTTCA-AAACCAAAAGTCTGATG-TTTTAAACTTCGAAATC
1 CGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-C-AAAGTCTGATGTTTTTAAGCTGCAAAATC
15005075 CTTTATAACTTACACTTAACAC
64 CTTTATAACTTACACTTAACAC
15005097 CATGAAAAAC
Statistics
Matches: 4902, Mismatches: 679, Indels: 817
0.77 0.11 0.13
Matches are distributed among these distances:
950 3 0.00
951 29 0.01
952 51 0.01
953 1 0.00
954 286 0.06
955 102 0.02
956 188 0.04
957 228 0.05
958 417 0.09
959 785 0.16
960 878 0.18
961 24 0.00
962 35 0.01
963 39 0.01
964 9 0.00
965 11 0.00
966 36 0.01
967 40 0.01
968 29 0.01
969 33 0.01
970 25 0.01
971 13 0.00
972 9 0.00
973 44 0.01
974 78 0.02
975 37 0.01
976 245 0.05
977 100 0.02
978 38 0.01
979 10 0.00
980 2 0.00
981 9 0.00
982 3 0.00
983 2 0.00
984 12 0.00
985 28 0.01
986 4 0.00
987 10 0.00
988 13 0.00
989 8 0.00
990 2 0.00
991 3 0.00
993 2 0.00
994 2 0.00
995 3 0.00
996 1 0.00
997 5 0.00
1000 19 0.00
1001 11 0.00
1002 14 0.00
1003 4 0.00
1004 14 0.00
1005 7 0.00
1006 11 0.00
1007 4 0.00
1008 3 0.00
1009 8 0.00
1010 31 0.01
1011 124 0.03
1012 10 0.00
1013 5 0.00
1014 3 0.00
1015 8 0.00
1016 5 0.00
1018 5 0.00
1019 7 0.00
1021 2 0.00
1022 5 0.00
1023 1 0.00
1024 10 0.00
1025 4 0.00
1028 1 0.00
1029 3 0.00
1030 3 0.00
1031 7 0.00
1032 2 0.00
1033 7 0.00
1034 8 0.00
1035 8 0.00
1036 1 0.00
1037 11 0.00
1038 2 0.00
1039 6 0.00
1040 9 0.00
1041 2 0.00
1042 9 0.00
1043 3 0.00
1044 2 0.00
1045 10 0.00
1046 7 0.00
1047 1 0.00
1048 10 0.00
1049 6 0.00
1050 9 0.00
1051 1 0.00
1052 1 0.00
1053 48 0.01
1054 52 0.01
1055 61 0.01
1057 2 0.00
1058 31 0.01
1059 4 0.00
1060 7 0.00
1061 1 0.00
1063 2 0.00
1064 11 0.00
1065 10 0.00
1067 8 0.00
1068 7 0.00
1071 2 0.00
1072 7 0.00
1073 2 0.00
1074 6 0.00
1075 19 0.00
1076 12 0.00
1077 1 0.00
1078 1 0.00
1079 9 0.00
1080 3 0.00
1081 7 0.00
1082 4 0.00
1083 11 0.00
1084 22 0.00
1085 8 0.00
1086 1 0.00
1087 5 0.00
1088 28 0.01
1089 10 0.00
1090 24 0.00
1091 15 0.00
1092 9 0.00
1093 7 0.00
1094 25 0.01
1095 14 0.00
1096 22 0.00
1097 8 0.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (960 bp):
CGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAAAATCCT
TTATAACTTACACTTAACACTACGAAAATAATTAAAACCAACGCAAGTTTTACCGAGTTTCTTTG
TTTGAGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACCTGCTAA
AACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACATAAAAT
TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACATAATTAT
TCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAAT
TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAA
AAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTC
TGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCA
ACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAAT
TAATTTCCACTTAAAAACCTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAA
TCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTG
CTAAAACAATTTAGCACATAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCA
AATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAA
GCAAATAAGTACGAAACACAGCGAAAAATTAAAATCGTGCGATAATCGTG
Found at i:15004673 original size:959 final size:960
Alignment explanation
Indices: 15002483--15005096 Score: 4712
Period size: 959 Copynumber: 2.7 Consensus size: 960
15002473 AAACGATATC
* ** *
15002483 CAACTTCACAAATAATATCCAAATATGAATTTCATTCATATGTAATTCCT-AAACATCCTTAGAG
1 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAA-ATCCTTAGAG
* * * * * *
15002547 CACCTAAAAATGTATCT-AAAACCAAATAAGTATGAAACACAACGAAATATTAAAATCGTGCAAT
65 CACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGAT
* *
15002611 AATTGTGCGAATGGTTTTTATGCCTAGAATTGTTCAGAAACAAAGTCTGATG-TTTTAAGCTGCA
130 AATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCA
* * *
15002675 AAATCCTTTATAACTTTCGCTTAACACTATGAAAA--ACTAAAACCAACGCAAGTTTTACCAAGT
195 AAATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGT
15002738 TTCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAAC
260 TTCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAAC
15002803 CAGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAAC
325 CAGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAAC
*
15002868 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGTGAACTGCTAAAACAGTTTAGCACA
390 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTGCTAAAACAGTTTAGCACA
15002933 TAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCAT
455 TAATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCAT
15002998 ATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACG
520 ATGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACG
15003063 CAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA
585 CAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA
15003128 CAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATG
650 CAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATG
*
15003193 AAAACCAACGCAAGTTTTGCCGAGTTTCTTTGTTTGAGTGAGCTTAAAACATTGGATTCGAGATA
715 AAAACCAACGCAAGTTTTACCGAGTTTCTTTGTTTGAGTGAGCTTAAAACATTGGATTCGAGATA
15003258 TTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCA
780 TTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCA
15003323 GTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTG
845 GTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTG
15003388 TGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
910 TGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
15003439 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
1 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
15003504 ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATA
66 ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATA
15003569 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
131 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
*
15003634 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCGAGTT
196 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGTT
* * * *
15003699 TCTTTGTTT-AGTGAGTTTAAAACATTGGATTCGAGATATTCAAATTAATTTCCACTTAAAAACC
261 TCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
* *
15003763 TGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
326 AGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
15003828 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCT-TGAACTGCTAAAACAGTTTAGCACAT
391 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTGCTAAAACAGTTTAGCACAT
15003892 AATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
456 AATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
15003957 TGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAAGCAAATAAGTACGAAACG
521 TGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAAGCAAATAAGTACGAAACG
15004022 CAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTTATGCCCAGAATTGTTCAGAA
585 CAGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGG-TTTTTATGCCCAGAATTGTTCAGAA
15004087 ACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTAT
649 ACAAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTAT
* *
15004152 TAAAACCAACGCAAG-TTTACCGAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTCGAGAT
714 GAAAACCAACGCAAGTTTTACCGAGTTTCTTTGTTTGAGTGAGCTTAAAACATTGGATTCGAGAT
15004216 ATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCC
779 ATTCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCC
15004281 AGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCT
844 AGTGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCT
15004346 GTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
909 GTGAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
15004398 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
1 CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
15004463 ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGC-AAAAATTAAAATCGTGCGATA
66 ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATA
15004527 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
131 ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
15004592 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGTT
196 AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGTT
15004657 TCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
261 TCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
*
15004722 AGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACA
326 AGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
* * * *
15004787 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
391 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTGCTAAAACAGTTTAGCACAT
* *
15004852 AATTATTCACATTAAGCACCAATAACAACTTCATAAATAATATCCAAATATGAAGATCATTCATA
456 AATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
* * * *
15004917 TGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAAGCATATAAGCATGAAACAC
521 TGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGC
* *
15004981 AGCGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCA-AAAC
586 AGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAA-
* * * *
15005045 CAAAAGTCTGATG-TTTTAAACTTCGAAATCCTTTATAACTTACACTTAACAC
650 C-AAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACAC
15005097 CATGAAAAAC
Statistics
Matches: 1598, Mismatches: 49, Indels: 21
0.96 0.03 0.01
Matches are distributed among these distances:
956 76 0.05
957 152 0.10
958 401 0.25
959 703 0.44
960 266 0.17
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (960 bp):
CAACTTCATAAATAATATCCAAATATGAAGATCACTCATATGTAATTCCTCAAAATCCTTAGAGC
ACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGCAGCGAAAAATTAAAATCGTGCGATA
ATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTTAAGCTGCAA
AATCCTTTATAACTTTCACTTAACACTACGAAAATTATTAAAACCAACGCAAGTTTTACCAAGTT
TCATTGTTTGAGTGAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
AGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCACAGGAAAACA
TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATGAACTGCTAAAACAGTTTAGCACAT
AATTATTCACATTAAGCACCGATAACAACTTCATAAATAATATCCAAATATGAAGATCACTCATA
TGTAATTCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAAGCAAATAAGTACGAAACGC
AGCGAAAAATTAAAATCGTGCGATAATCGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAAC
AAAGTCTGATGTTTTTAAGCTGCAAAATCCTTTATAACTTTCACTTAACACTACGAAAATTATGA
AAACCAACGCAAGTTTTACCGAGTTTCTTTGTTTGAGTGAGCTTAAAACATTGGATTCGAGATAT
TCAAATTAATTTCCACTTAAAAACCTGCTAAAACAATGCCTTCATATTTTAAAGCTTGACTCCAG
TGAAAATCATTTTCACAGGAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTGT
GAACTGCTAAAACAGTTTAGCACATAATTATTCACATTAAGCACCGATAA
Found at i:15005213 original size:126 final size:127
Alignment explanation
Indices: 15004986--15005221 Score: 316
Period size: 127 Copynumber: 1.9 Consensus size: 127
15004976 AACACAGCGA
** * *
15004986 AAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAAAACCAAAAG
1 AAAATTAAAATCACGCAATAATTGTGCGAATAGTTTTTACGCCCAGAATTGTTCAAAACCAAAAG
* * *
15005051 TCTGATGTTTTAAACTTCGAAATCCTTTATAACTTACACTTAACACCATGAAAAACAACAAG
66 TCTGATGTTTTAAACTTCAAAACCCTTTATAACTTACACTAAACACCATGAAAAACAACAAG
* * * * *
15005113 AAAATTAAAATCACGCGAA-AATTGTTCGAATATTTTTTACGCCCATAATTGTTCAGAAGC-AAA
1 AAAATTAAAATCACGC-AATAATTGTGCGAATAGTTTTTACGCCCAGAATTGTTCAAAACCAAAA
*
15005176 GTCTGATGTTTT-AAGTTCTAAAACCCTTTATAACTTACACTAAACA
65 GTCTGATGTTTTAAACTTC-AAAACCCTTTATAACTTACACTAAACA
15005222 TTACGAAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
125 5 0.05
126 39 0.41
127 48 0.51
128 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (127 bp):
AAAATTAAAATCACGCAATAATTGTGCGAATAGTTTTTACGCCCAGAATTGTTCAAAACCAAAAG
TCTGATGTTTTAAACTTCAAAACCCTTTATAACTTACACTAAACACCATGAAAAACAACAAG
Found at i:15006171 original size:473 final size:474
Alignment explanation
Indices: 15005097--15006181 Score: 1566
Period size: 477 Copynumber: 2.3 Consensus size: 474
15005087 CACTTAACAC
* * ** * * ** *
15005097 CATGAAAAACAACAAGAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTACGCCCATAAT
1 CATGAATAACAACGA-AAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTAAGCCCATAAT
* * * * * * *
15005162 TGTTCAGAAGCAAAGTCTGATGTTTTAAGTTCTAAAACCCTTTATAACTTACACTAAACATTACG
65 TGTTCA-AAACAAAGTCTGATGTTTAAACTTC-AAAATCCTTTATAACTTACACTTAACACTATG
* *
15005227 AAAAATTAAAACCAATGCAAGTTTTACCATGTTTCTTTGTTTGAGCAAGTTCAAAACATTGGATT
128 AAAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTCAAAACATTGGATT
* * * *
15005292 CAAGATATTGAAATTCATTTCCATTTCAAAACCTGCTAAAACAATGCTTTCGTATTTTAAAGCTT
193 CAAGATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAACAATGCTTTCATATTTTAAAGCTT
* *
15005357 GACGCCGGTGAAAATCATTTTCAAAGCAAAACATAAAAATTTCAAAACCATTAGGCTTCGAGTGC
258 GACGCCAGTGAAAATAATTTTCAAAGCAAAACATAAAAATTTCAAAACCATTAGGCTTCGAGTGC
* *
15005422 TCCCCCTATAAACTGCTAAAACAATTTAGCGCATAATTAATCACATCAAGCACCAATAACAACTT
323 TCCCCCTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCACCAATAACAACTT
*
15005487 CACAAATAATATCCAAATATGAAGATCATTAATACGTAATTCCTCAACATCCTTAGAGCACCTAA
388 CACAAAT-ATATCCAAATATGAAGATCATTAATACGTAATTCCTCAAAATCCTTAGAGCACCTAA
15005552 AAATGTATCTAAAAGCAAATAAG
452 AAATGTATCTAAAAGCAAATAAG
* * *
15005575 CATGAATAACAACGAAAAATAAAAATCGTGCAATAATTGTGCGAATGGCTTTTAAGCCCATAATT
1 CATGAATAACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTAAGCCCATAATT
* * * * *
15005640 GTTCAGAAACAAAGTCTAATGGTTTAAGCTCCAAAATCCTTTATAACATACGCTTAACACTATGA
66 GTTCA-AAACAAAGTCTGAT-GTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGA
** *
15005705 AAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGTGAGTTTAAAACATTGGATTC
129 AAAATTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTCAAAACATTGGATTC
*
15005770 AAGATATTCAAATTCATTTCCATTTAAAAACCAGCTGAAACAATGCTTTCATATTTTAAAGCTTG
194 AAGATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAACAATGCTTTCATATTTTAAAGCTTG
* * *
15005835 ACTCCAGTGAAAATAATTTTCAAAGGAAAACAT-AAAA-TTCAAAAGCATTAGGCTTCGAGTGCT
259 ACGCCAGTGAAAATAATTTTCAAAGCAAAACATAAAAATTTCAAAACCATTAGGCTTCGAGTGCT
* *
15005898 CCCCCTATAAACTGCTAAAACAATTTAGCACACAATTATTCACATTAAGCACCAATAACAACTTC
324 CCCCCTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCACCAATAACAACTTC
* * * *
15005963 ATAGAT-TATCCAAATATGAAGATCATTCATATGTAATTCCTCAAAATCCTTAGAGCACCTAAAA
389 ACAAATATATCCAAATATGAAGATCATTAATACGTAATTCCTCAAAATCCTTAGAGCACCTAAAA
15006027 ATGTATCTAAAAGCAAATAAG
454 ATGTATCTAAAAGCAAATAAG
* * * * *
15006048 TATGAA-ACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTATGTCCAGAAT
1 CATGAATA-ACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTAAGCCCATAAT
* *
15006112 TGTTCAAAACCAAAGTCTGATGTTTCAAACTTCGAAATCCTTTATAACTTACACTTAACACCATG
65 TGTTCAAAA-CAAAGTCTGATGTTT-AAACTTCAAAATCCTTTATAACTTACACTTAACACTATG
15006177 AAAAA
128 AAAAA
15006182 CAACAAGAAA
Statistics
Matches: 540, Mismatches: 63, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
472 8 0.01
473 184 0.34
475 90 0.17
476 4 0.01
477 234 0.43
478 20 0.04
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (474 bp):
CATGAATAACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTAAGCCCATAATT
GTTCAAAACAAAGTCTGATGTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAA
AATTAAAACCAACGCAAGTTTTACCAAGTTTCTTTGTTTGAGCAAGTTCAAAACATTGGATTCAA
GATATTCAAATTCATTTCCATTTAAAAACCAGCTAAAACAATGCTTTCATATTTTAAAGCTTGAC
GCCAGTGAAAATAATTTTCAAAGCAAAACATAAAAATTTCAAAACCATTAGGCTTCGAGTGCTCC
CCCTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCACCAATAACAACTTCAC
AAATATATCCAAATATGAAGATCATTAATACGTAATTCCTCAAAATCCTTAGAGCACCTAAAAAT
GTATCTAAAAGCAAATAAG
Found at i:15006295 original size:126 final size:126
Alignment explanation
Indices: 15006063--15006295 Score: 306
Period size: 126 Copynumber: 1.8 Consensus size: 126
15006053 AACACAGCGA
** * * *
15006063 AAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTTATGTCCAGAATTGTTCAAAACCAAAGT
1 AAAATTAAAATCACGCGAAAATTGTGCGAATAGTTTTTATGCCCAGAATTGTTCAAAACCAAAGT
* *
15006128 CTGATGTTTCAAACTTCGAAATCCTTTATAACTTACACTTAACACCATGAAAAACAACAAG
66 CTGATATTTCAAACTTCAAAATCCTTTATAACTTACACTTAACACCATGAAAAACAACAAG
* *
15006189 AAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAGAATTGTTCGAAAA-CAAAG
1 AAAATTAAAATCACGCGAAAATTGTGCGAATAGTTTTTATGCCCAGAATTGTTC-AAAACCAAAG
** ** * * *
15006253 TCTGATATTTTGAGTTTCAAAATCCTTTCTAAGTTACTCTTAA
65 TCTGATATTTCAAACTTCAAAATCCTTTATAACTTACACTTAA
15006296 AACAGTGGAA
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
126 86 0.96
127 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (126 bp):
AAAATTAAAATCACGCGAAAATTGTGCGAATAGTTTTTATGCCCAGAATTGTTCAAAACCAAAGT
CTGATATTTCAAACTTCAAAATCCTTTATAACTTACACTTAACACCATGAAAAACAACAAG
Found at i:15007080 original size:26 final size:26
Alignment explanation
Indices: 15007045--15007095 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15007035 CAATTATTAA
15007045 TACGATGCGTTTAAGTAAAATTAGGT
1 TACGATGCGTTTAAGTAAAATTAGGT
*
15007071 TACGGTGCGTTTAAGTAAAATTAGG
1 TACGATGCGTTTAAGTAAAATTAGG
15007096 GTGTGTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.33
Consensus pattern (26 bp):
TACGATGCGTTTAAGTAAAATTAGGT
Found at i:15007640 original size:59 final size:59
Alignment explanation
Indices: 15007546--15007661 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
15007536 GCTTGGGTTC
15007546 GATTCTTTTCAATAGCGATTCAAAATTTTTATTTTTTAATAGCCATGTTTCTTCCACCT
1 GATTCTTTTCAATAGCGATTCAAAATTTTTATTTTTTAATAGCCATGTTTCTTCCACCT
* * *
15007605 GATTCTTTTCAATAGTGATTCCAAATTTTTTTTTTTTAATAGCCATGTTTCTTCCAC
1 GATTCTTTTCAATAGCGATTCAAAATTTTTATTTTTTAATAGCCATGTTTCTTCCAC
15007662 GTAATTCATG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.49
Consensus pattern (59 bp):
GATTCTTTTCAATAGCGATTCAAAATTTTTATTTTTTAATAGCCATGTTTCTTCCACCT
Found at i:15008818 original size:45 final size:45
Alignment explanation
Indices: 15008753--15008905 Score: 198
Period size: 45 Copynumber: 3.4 Consensus size: 45
15008743 CATGCTTTTT
* * * *
15008753 CGATGGTGTTTGAAGCAACCGCCCACACCAGGGGCCATTTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATTTTGTGC
*
15008798 TGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATTTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATTTTGTGC
* * * **
15008843 CGATGGTGGTCGAGGCAACCGCTCGCACTAGGGCCCAGCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATTTTGTGC
* *
15008888 CGATGGCGGTTGAGGCAA
1 CGATGGTGGTCGAGGCAA
15008906 GTGCCCATAC
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 95 1.00
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.20
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATTTTGTGC
Found at i:15009424 original size:26 final size:26
Alignment explanation
Indices: 15009388--15009440 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15009378 GTTGACTTAG
15009388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15009414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15009440 G
1 G
15009441 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15010322 original size:26 final size:26
Alignment explanation
Indices: 15010286--15010338 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15010276 GTTGACTTAG
*
15010286 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
15010312 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15010338 G
1 G
15010339 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15011604 original size:888 final size:886
Alignment explanation
Indices: 15009088--15011972 Score: 4158
Period size: 888 Copynumber: 3.2 Consensus size: 886
15009078 CCATCGTAAA
*
15009088 AAAAATGGCATTGGCATGGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
15009153 CACGGCTTGCGCATCTCGCCTCTT-TGACCGACGTAGTGCCCACCTGCCCGCCTGCTCGTTTCGT
66 CACGGCTTGCGCATCCCGCCT-TTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTTCGT
15009217 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA-ACCGAGGGTTGCGAC
129 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGAC
* *
15009281 AGTAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
194 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
15009346 GCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
259 GCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
15009411 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATGCT
324 TAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCT
15009476 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACC
388 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACC
* * *
15009541 GCGGCATT-GGGTTTCGACGATGGGGGGGGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
453 G-GGCATTGGGGTTTCGGCGAT-GGGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGAGTG
* * * *
15009605 CTGGTACTTGACCCTTATATTGGCTCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
516 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
15009670 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
581 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15009735 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCA
646 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
15009800 ACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
711 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAA
* * * ** * * *
15009865 AATCCTGAACCGTAAAAACTTTAAAAAATTATGAAAAATAGAAAACAACTCGTCTTGCCATTAAA
776 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
15009930 CTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCA-
841 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
** ** * * *
15009975 AAAAATGGCATACCCACTACCTACCACCTACCACCAAAAATATGAAGATGTACTTAAACCCACCT
1 AAAAATGG------CA-T---TGGCA--T---GGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
15010040 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCTGGCGTAGTGCCAGCCCGCCCG
51 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * *
15010105 -CC--CGTTTCGTCGATTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCGGACCG-GAC
116 CCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGAC
* * * * * * *
15010166 CGAGGGTTGTGGCAGCAAGATCGGTAGCACACAGAAGGGGACCCGACCCATCCCCGGCTTGCGCA
181 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* *
15010231 TCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAG
246 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * *
15010296 TTCATTCCTAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGATCGAACCAAGGGTTGC
311 TTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGGATCGAGGGTTGC
* * *
15010361 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGACACCATCACC
375 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCC
* *
15010426 GGAGAACCTGACCGACGGCATTGGGGTTCCGGGGATGGGGGGGACCGGGGGGGTGTGCGCACATG
440 GGAGAACCTGACCG--GGCATTGGGGTTTCGGCGATGGGGGGGACC-GGGGGGTGTGCGCACATG
15010491 ATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
502 ATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
15010556 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
567 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
15010621 GAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
632 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
15010686 TTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTCTG
697 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTG
* * *
15010751 AAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTT
762 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
15010816 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
827 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
*
15010876 AAAAATGGCATTGGCATGGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
15010941 CACGGCTTGCGCATCCCGTCTTTCTGGCCGGCATCGTGCCCGCCCGCCCGCCCGTACGTTTCGTC
66 CACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGT-CGTTTCGTC
* * *
15011006 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CGAGACTGAGTGTTGCGACA
130 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGACA
* * * * *
15011070 GCAGGATTGGCAGCACGTAGAGGGGGACTC-AGTCGGTCCCCGGCTTGCGCATCCCGCCCCTCTG
195 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** *
15011134 GCCGGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCCAGTC
259 GCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * **
15011199 TAAGCATACGGAGTTCATTCCAAGTCAAAGATCAGACCGGATCGAGGGTTATGGCAGCACATGCT
324 TAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCT
* * * * *
15011264 GGGCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACTATCGTCGGAGAACCTAACC
388 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACC
* *
15011329 GGTAGCATTGGGGTTTCGGCGAT-AGGGGGACCGGGGGGTGTGCGCACATGATGTACGATGAGTG
453 GG--GCATTGGGGTTTCGGCGATGGGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGAGTG
* * *
15011393 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCACTTA
516 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * *
15011458 AAGAGCATTTTAGATTTTACAGGTTTCCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAACACT
581 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15011523 TTTTTCGAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
646 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** *
15011588 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAAGCCTTCTAAAAAAATTTTAAAA
711 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
15011653 AATCTCGAACGGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
776 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
15011718 CATCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
841 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
* * ** * *
15011764 AAAAATGACATTGGCACGATAGATATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
15011829 CACGGCTTGCGCATCTCG-TTTTTTGGGCCAACGTAGTGCCCGCCTGCCTGCCCGCCCGTTTCAT
66 CACGGCTTGCGCATCCCGCCTTTCT-GGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTTCGT
* * * **
15011893 CGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCG-GACCGAGGGTTGCGGT
129 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGAC
*
15011957 AGCAGGATCGGTAGCA
194 AGCAGGATCGGCAGCA
15011973 TATAGAGGCA
Statistics
Matches: 1781, Mismatches: 183, Indels: 67
0.88 0.09 0.03
Matches are distributed among these distances:
886 85 0.05
887 14 0.01
888 554 0.31
889 15 0.01
890 300 0.17
891 3 0.00
893 2 0.00
894 2 0.00
895 2 0.00
897 4 0.00
898 305 0.17
899 17 0.01
900 387 0.22
901 10 0.01
902 81 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGACAG
CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGGG
CATTGGGGTTTCGGCGATGGGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
Found at i:15017610 original size:26 final size:26
Alignment explanation
Indices: 15017574--15017626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15017564 GTTGACTTAT
*
15017574 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
15017600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15017626 G
1 G
15017627 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Done.