Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 77 of 160
Found at i:15289699 original size:26 final size:26
Alignment explanation
Indices: 15289670--15289719 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15289660 CCAGTCCGAT
*
15289670 CTTAGAATGGGAATGAACTCCGTACG
1 CTTAGAATGGGAATAAACTCCGTACG
*
15289696 CTTAGACTGGGAATAAACTCCGTA
1 CTTAGAATGGGAATAAACTCCGTA
15289720 TACCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTACG
Found at i:15289721 original size:721 final size:720
Alignment explanation
Indices: 15288333--15289785 Score: 2658
Period size: 721 Copynumber: 2.0 Consensus size: 720
15288323 TCAGAGAGAC
15288333 GGGATGCGCAAGTCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCA
1 GGGATGCGCAAGTCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCA
* * *
15288398 TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTT
66 TGCCAATACCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
15288463 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTTT
* * *
15288528 TTAAATTTTTTCAGAAGGAATTTTGGCTCCAAACATGGTAGACGTGATCATTGTATTTTTGTTGG
196 TAAAATCTTTTCAGAAGGAATTTTGGCCCCAAACATGGTAGACGTGATCATTGTATTTTTGTTGG
15288593 CATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGT
15288658 GTCCCTATTCCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCTATTCCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
15288723 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTAC
391 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTAC
* *
15288788 CCATCACACATCATGTGCGCACACCCCCCTGGTCCCCCCATCATCGGAACCCCAATGTCGCCGGT
456 CCATCACACATCATGTGCGCACACCCCCCTGGTCCCCCCATCATCGGAACCCCAATGTCACCAGT
* *
15288853 CAGGTTCTCTGGCGATGGTGTCCCGGTAAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
521 CAGGTTCTCCGACGATGGTGTCCCGGTAAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
*
15288918 ATGTGCTGCCGCAACCCTCGGTCCGTTCCGATCTTAGAATGGGAATGAACTCCGTAGCTTAGACT
586 ATGTGCTACCGCAACCCTCGGTCCGTTCCGATCTTAGAATGGGAATGAACTCCGTAGCTTAGACT
*
15288983 GGGAATGAACTCCGTATACCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCACAGCCGGCCAGA
651 GGGAATAAACTCCGTATACCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCACAGCCGGCCAGA
15289048 GGGGA
716 GGGGA
* *
15289053 GGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
1 GGGATGCGCAAGTCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCC
* *
15289118 ATGCCAATACCATTTTTCTAGCTTGTAAATTTATACAATGGTCCCTTACGCCTTCATGTGAAGTT
65 ATGCCAATACCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* *
15289183 TCATGGCATGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTT
15289248 TTAAAATCTTTTCAGAAGGAATTTTGGCCCCAAACATGGTAGACGTGATCATTGTATTTTTGTTG
195 TTAAAATCTTTTCAGAAGGAATTTTGGCCCCAAACATGGTAGACGTGATCATTGTATTTTTGTTG
*
15289313 GCATGCGCAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAG
15289378 TGTCCCTATTCCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
325 TGTCCCTATTCCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
15289443 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTA
390 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTA
* *
15289508 CCCATCGCACATCATGTGCGCACA-CCCCCTGGTCCCCCCATCGTCGGAACCCCAATGTCACCAG
455 CCCATCACACATCATGTGCGCACACCCCCCTGGTCCCCCCATCATCGGAACCCCAATGTCACCAG
*
15289572 TCAGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAG
520 TCAGGTTCTCCGACGATGGTGTCCCGGTAAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAG
15289637 CATGTGCTACCGCAACCCTCGGTCCAG-TCCGATCTTAGAATGGGAATGAACTCCGTACGCTTAG
585 CATGTGCTACCGCAACCCTCGGTCC-GTTCCGATCTTAGAATGGGAATGAACTCCGTA-GCTTAG
15289701 ACTGGGAATAAACTCCGTATACCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCACAGCCGGCC
648 ACTGGGAATAAACTCCGTATACCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCACAGCCGGCC
15289766 AGAGGGGA
713 AGAGGGGA
*
15289774 GAGATGCGCAAG
1 GGGATGCGCAAG
15289786 CCAGGGATCG
Statistics
Matches: 706, Mismatches: 24, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
720 177 0.25
721 529 0.75
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (720 bp):
GGGATGCGCAAGTCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCA
TGCCAATACCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTTT
TAAAATCTTTTCAGAAGGAATTTTGGCCCCAAACATGGTAGACGTGATCATTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGT
GTCCCTATTCCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTAC
CCATCACACATCATGTGCGCACACCCCCCTGGTCCCCCCATCATCGGAACCCCAATGTCACCAGT
CAGGTTCTCCGACGATGGTGTCCCGGTAAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
ATGTGCTACCGCAACCCTCGGTCCGTTCCGATCTTAGAATGGGAATGAACTCCGTAGCTTAGACT
GGGAATAAACTCCGTATACCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCACAGCCGGCCAGA
GGGGA
Found at i:15292172 original size:26 final size:26
Alignment explanation
Indices: 15292143--15292195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15292133 CTGGTCCGAT
* *
15292143 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15292169 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15292195 C
1 C
15292196 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15293089 original size:26 final size:26
Alignment explanation
Indices: 15293039--15293089 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293029 CAGTCTGAAC
* *
15293039 TTAGACTGGGAATGAACTTCTTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
15293065 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15293090 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:15293846 original size:603 final size:608
Alignment explanation
Indices: 15292654--15293865 Score: 1703
Period size: 603 Copynumber: 2.0 Consensus size: 608
15292644 TTGGTAGACG
* * * *
15292654 TGATCCTCGTATTTTTGTTGGCCTGCACAAAAAAATTCTGTTAAAAACTCGAAGTGTACAATATT
1 TGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
15292719 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
15292784 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
15292849 ATAACGGGCCAAAGTACCAGCAACCATCGCTACATCATTTGCGCACAACCCCTCCCGGCCCCCCC
196 ATAACGGGCCAAAGTACCAGCAACCATCGCTACATCATTTGCGCACAACCCCTCCCGGACCCCCC
* * * * * *
15292914 GATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGATGATGGTGTCCCGGTGAAGAAACATG
261 GATCATCGGAACCCCAATACCGTCAGTCAGGTTCTCCGATGATGGTGTCCCGGAGAAGAAAAATG
* *
15292979 CGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCAGTCTGAACTTAGA
326 CGGCACCAACACATGCCCGAGCCCAGCAAGTGCTGCTA-AACCCTCGGTCCAGTCTGAACTTAGA
* * *
15293044 CTGGGAATGAACTTCTTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
390 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** * ** * *
15293109 CAAACGTACGGCTGCTCAGCCGGCCATAAGGGCGGGATGCAAAAGTCGGGGATCGGCTGGGTCCC
455 CAAACGTACGGCTGCTCAGCCGGCCAGAAGGGCAAGATGCAAAAGCCAAGGATAGGCTGAGTCCC
* * * * * * *
15293174 TCTCTGCGTGCTACTGATCCTGCTGCAGCAACCCTCAATCTGGTCTGATCATAGACTGGGAATGA
520 CCTCTACATGCTACCGATCCTGCTGCAGCAACCCTCAACCTGGTCTAATCATAGACTAGGAATGA
*
15293239 ACTCCGTATG-CTTAAGCCAACCGA
585 ACTCCATATGTC-TAAGCCAACCGA
* * *
15293263 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATT
1 TGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
15293328 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
15293393 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
15293458 ATAA-GGGCC-AAGTGCCAGCACCCATCGC-ACATCATTTGTGCAC-ACCCC-CCC-GACCCCCC
196 ATAACGGGCCAAAGTACCAGCAACCATCGCTACATCATTTGCGCACAACCCCTCCCGGACCCCCC
* *
15293517 GATCATGGGAACCCCAATACCGTCAGTCAGGTTCTCTGGA-GATGGTG-CCTCGGAGAAGAAAAA
261 GATCATCGGAACCCCAATACCGTCAGTCAGGTTCTC-CGATGATGGTGTCC-CGGAGAAGAAAAA
* * * * *
15293580 TGCGGCACCAACACATGCTCGAGCCCAGTAAGTGCTATCGT-AACCCTCGGTCCGGTCTGATCTT
324 TGCGGCACCAACACATGCCCGAGCCCAGCAAGTGCT-GC-TAAACCCTCGGTCCAGTCTGAACTT
* *
15293644 CGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
387 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** * * * * ** *
15293709 AAATGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGTAAGATGCGTAAGCCAAGGATTAGTC-GA
452 AAACAAACGTAC-GGCTGCTCAGCCGGCCAGAAGGGCAAGATGCAAAAGCCAAGGA-TAGGCTGA
* * *
15293772 GTCCCCCTCTACATGCTACCGATCCTGCTGCCA-CAACCCTCAGCCTGGTTTAATCTTAGACTAG
515 GTCCCCCTCTACATGCTACCGATCCTGCTG-CAGCAACCCTCAACCTGGTCTAATCATAGACTAG
15293836 GAATGAACTCCATATGTCTAAGCCAACCGA
579 GAATGAACTCCATATGTCTAAGCCAACCGA
15293866 CGAAATGAGC
Statistics
Matches: 534, Mismatches: 61, Indels: 22
0.87 0.10 0.04
Matches are distributed among these distances:
602 2 0.00
603 285 0.53
604 15 0.03
605 6 0.01
606 14 0.03
607 17 0.03
608 5 0.01
609 190 0.36
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (608 bp):
TGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAACGGGCCAAAGTACCAGCAACCATCGCTACATCATTTGCGCACAACCCCTCCCGGACCCCCC
GATCATCGGAACCCCAATACCGTCAGTCAGGTTCTCCGATGATGGTGTCCCGGAGAAGAAAAATG
CGGCACCAACACATGCCCGAGCCCAGCAAGTGCTGCTAAACCCTCGGTCCAGTCTGAACTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
AAACGTACGGCTGCTCAGCCGGCCAGAAGGGCAAGATGCAAAAGCCAAGGATAGGCTGAGTCCCC
CTCTACATGCTACCGATCCTGCTGCAGCAACCCTCAACCTGGTCTAATCATAGACTAGGAATGAA
CTCCATATGTCTAAGCCAACCGA
Found at i:15294566 original size:26 final size:26
Alignment explanation
Indices: 15294530--15294581 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15294520 CAATCTAATT
15294530 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
15294556 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15294582 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15295086 original size:890 final size:886
Alignment explanation
Indices: 15293263--15295439 Score: 3152
Period size: 890 Copynumber: 2.4 Consensus size: 886
15293253 AGCCAACCGA
* *
15293263 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT-TGAAGTGTACAAGAT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCT-AAGTGTACAAGAT
*
15293327 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
65 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15293392 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
130 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
15293457 TATAAGGGCCAAGTGCCAGCACCCATCGCACATCATTTGTGCACACCCCCCCGACCCCCCGATCA
195 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCCCCGATCG
* * * * * *
15293522 TGGGAACCCCAATACCGTCAGTCAGGTTCTCTGGA-GATGGTG-CCTCGGAGAAGAAAAATGCGG
260 TCGGAACCCCAATGCCGTCGGTCAGGTTCT-TCGACGATGGTGTCC-C-GCGAAGAAAAATGTGG
* * * * * *
15293585 CACCAACACATGCTCGAGCCCAGTAAGTGCTATCGTAACCCTCGGTCCGGTCTGATCTTCGACTG
322 CACCAACACATGCCCGAGCCAAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
*
15293650 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGA
387 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
15293715 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAAGATGCGTAAGCCAAGGATTAGTCGAGTCCCCCT
452 GCGTGCGGCCGCTCAGCCGGCCAGAAGGGCAAGATGCGCAAGCCAAGGATGAGCCGAGTCCCCCT
* *
15293780 CTACATGCTACCGATCCTGCTGCCACAACCCTCAGCCTGGTTTAATCTTAGACTAGGAATGAACT
517 CTACATGCTACCGATCCTGCTGCCACAACCCTCAGCCTGGTCTAATCTTAGACTACGAATGAACT
* * ** * *
15293845 CCATATGTCTAAGCCAACCGACGAAATGAGCAGGTGGGCGGGCAGGCACTACGCCGGCCAGAGAG
582 CCATAAGCCTAAGCCAACCGACGAAACAAGCAGGCGGACGGGCAGGCACTACGCCGGCCAGAGAG
* * * *
15293910 GGGGAGGCGCAAGCCTTGGATCGGTAGGTGACAGGTGGGTTTAGGCACATCTTCATATTTCTGCT
647 GGGGAGGCGCAAGCCGTGGATCGATAGGTGACAGGTGGGTTTAGGCACATCTTCATATTTCTACC
* *
15293975 GTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
712 ATGCCAAAGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* *
15294040 TCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTATTGTTCGAGATTTT
777 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATCGTTCGAGATTTT
* * *
15294105 TTTAAATTTTTTCAGAAGGAATTTTGGCCCTAAACCTGGTAGACG
842 TTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACCTGGTAGAAG
* * * *
15294150 TGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCTA-CTAAAAACTCTAAGTGTTCAATAT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-AAGCTAAAAACTCTAAGTGTACAAGAT
* *
15294214 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTG
65 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15294279 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAA
130 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15294344 TATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGCACACCCCCCCGGCCCCTCCGATC
195 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCC-CCGATC
* * * *
15294409 GTCAGAACCTCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGTCCCAGCGAAGAAACATGTGGC
259 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGTCCC-GCGAAGAAAAATGTGGC
* * ** * *
15294474 ACCAACACATGCCCGAGCCAAGCATGTGCTG-CTATAACCCTTGGTCCAATCTAATTTTAGACTG
323 ACCAACACATGCCCGAGCCAAGCATGTGCTGTC-GTAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
15294538 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAATCCATGAAACGA
387 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
* ** * ** **
15294603 GCGTGCGGCCGCTCAGCCGGCCATAAGGGCGGGATGCGCAAGTCGGGGATCGA-CCGAGTCTTCC
452 GCGTGCGGCCGCTCAGCCGGCCAGAAGGGCAAGATGCGCAAGCCAAGGAT-GAGCCGAGTCCCCC
** *
15294667 TCTATGTGCTACCGATCCTGCTG-CAGCAACCCTCGATCC-GGTCTAAT-TATAGACTACGAATG
516 TCTACATGCTACCGATCCTGCTGCCA-CAACCCTC-AGCCTGGTCTAATCT-TAGACTACGAATG
** ** **
15294729 AACTCTGTAAGCCTAAGCCAACCGGTGAAACAAGTGGGCGGACGGGCAGGCACTACGCCGGCCAG
578 AACTCCATAAGCCTAAGCCAACCGACGAAACAAGCAGGCGGACGGGCAGGCACTACGCCGGCCAG
* ** *
15294794 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATT
643 AGAGG-GGGAGGCGCAAGCCGTGGATCGATA-GGTGACAGGTGGGTTTAGGCACATCTTCATATT
*
15294859 TCTACCATGCCAAAGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
706 TCTACCATGCCAAAGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * *
15294924 GAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTA-CGATTTG
771 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATCG-TTCG
* * *
15294988 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAG
835 AGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACCTGGTAGAAG
* *
15295040 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCTAAGTGTACAAGATT
* *
15295105 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACAGGCAGCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
**
15295170 AAAATCTCAAATGCTCTTTAAGGGTATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
15295235 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCGCCCCTGTTC
196 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCC-CCCC-GATC
* *
15295300 GTCGGAACCCCAATGCCGTCGGTCAGGATCTTCGACGATGGTGTCCCGACGAAGAAAAATATGGC
259 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGTCCCG-CGAAGAAAAATGTGGC
* *
15295365 ACCAGCACATGCCCGAGCCCAA-CATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTG
323 ACCAACACATGCCCGAG-CCAAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
15295429 GGAATGAACTC
387 GGAATGAACTC
15295440 TGCATGCCTA
Statistics
Matches: 1147, Mismatches: 124, Indels: 34
0.88 0.10 0.03
Matches are distributed among these distances:
887 242 0.21
888 320 0.28
889 30 0.03
890 428 0.37
891 122 0.11
892 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCTAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGTCCCGCGAAGAAAAATGTGGCACC
AACACATGCCCGAGCCAAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGCCGCTCAGCCGGCCAGAAGGGCAAGATGCGCAAGCCAAGGATGAGCCGAGTCCCCCTCTAC
ATGCTACCGATCCTGCTGCCACAACCCTCAGCCTGGTCTAATCTTAGACTACGAATGAACTCCAT
AAGCCTAAGCCAACCGACGAAACAAGCAGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGGGG
AGGCGCAAGCCGTGGATCGATAGGTGACAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGC
CAAAGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATCGTTCGAGATTTTTTAA
AATTTTTTCAGAAGGAATTTTGGCCCCAAACCTGGTAGAAG
Found at i:15295475 original size:4 final size:4
Alignment explanation
Indices: 15295468--15295497 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
15295458 GACGAAACGA
*
15295468 GCGG GCGG GCGG GTGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
15295498 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:15296060 original size:718 final size:717
Alignment explanation
Indices: 15294762--15296157 Score: 2208
Period size: 718 Copynumber: 1.9 Consensus size: 717
15294752 GGTGAAACAA
* *
15294762 GTGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
1 GTGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGG
* * *
15294827 GTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCATGCCAAAGCCATTTTTTTGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACCATGCCAAAGCAATTTTTTTGGCTTGTA
*
15294892 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** *
15294957 TTTCACGATTTTTAAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
196 TTTCACGATTTTTAAAACTTTTTACGATTCAGGATTTTTTAAAACTTTTTCAGAAGGAGTTTTGG
* *
15295022 CCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAA
261 CCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTAAGCTAAAAA
* *
15295087 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
326 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
* * *
15295152 TACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTATGTGAGTTCTCGAGGTTTGAT
391 TACAGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGG-ATGCGAGTTCTCAAGGTTTGAT
* * *
15295217 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
455 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGGGCACACACCC
* *
15295282 CCCGGGCCGCCCCTGTTCGTCGGAACCCCAATGCCGTCGGTCAGGATCTTCGACGATGGTGTCCC
520 CCCGGGCCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGATCTTCGACGATGGTGTCCC
* * *
15295347 GACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGGTCT
585 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTCGGTCC
* * **
15295412 GGTCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAACTAACTGACGAAACGAGCGGGCGGG
650 GATCCGATCTTAGACTGAAAATGAACTCTGCATGCCTAAACTAACTGACGAAACGAGCGGGCGGG
15295477 CGG
715 CGG
* * * *
15295480 GTGGGCGGGCGGGCGGGCACTACGTCGGCGAGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGG
1 GTGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGG
* *
15295545 GTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCCATGCCAATGCAATTTTTTTGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACCATGCCAAAGCAATTTTTTTGGCTTGTA
* *
15295610 AATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
15295675 TTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAACTTTTTCAGAAGGATTTTTGG
196 TTTCACGATTTTTAAAACTTTTTACGATTCAGGATTTTTTAAAACTTTTTCAGAAGGAGTTTTGG
* *
15295740 -CCCAATACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAA
261 CCCCAA-ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTAAGCTAAAA
* * *
15295804 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAGACTTTAATGG
325 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGG
* *
15295869 CTACTGGCAGCAACCCTGCAAAATCTCAAATGCTCTTTAAAGGG-TGCGAGTTCTCAAGGTTTGA
390 CTACAGGCAGCAAACCTGCAAAATCTCAAATGCTCTTT-AAGGGATGCGAGTTCTCAAGGTTTGA
*
15295933 TGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCAATCGCACATCATGGGCACACAAC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGGGCACAC-AC
* **
15295998 CTCCCC-GGCAC-CCCCCGATC-TCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGGT
518 C-CCCCGGGC-CGCCCCCGATCGT-CGGAACCCCAATGCCGTCGGTCAGGATCTTCGACGATGGT
* * *
15296060 GTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAGCCCTC
580 GTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTC
15296125 GGTCCGATCCGATCTTAGACTGAAAATGAACTC
645 GGTCCGATCCGATCTTAGACTGAAAATGAACTC
15296158 CATGTGCTTA
Statistics
Matches: 618, Mismatches: 54, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
717 82 0.13
718 526 0.85
719 10 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (717 bp):
GTGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGG
GTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACCATGCCAAAGCAATTTTTTTGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTAAAACTTTTTACGATTCAGGATTTTTTAAAACTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTAAGCTAAAAA
CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
TACAGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGATGCGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGGGCACACACCCC
CCGGGCCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGATCTTCGACGATGGTGTCCCG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTCGGTCCG
ATCCGATCTTAGACTGAAAATGAACTCTGCATGCCTAAACTAACTGACGAAACGAGCGGGCGGGC
GG
Found at i:15296263 original size:20 final size:20
Alignment explanation
Indices: 15296219--15296256 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15296209 CGAGCGTGTA
*
15296219 GGCGGTCAGTCGGCCAGACG
1 GGCGGTCAATCGGCCAGACG
15296239 GGCGGTCAATCGGCCAGA
1 GGCGGTCAATCGGCCAGA
15296257 GTGGCGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.29, G:0.42, T:0.11
Consensus pattern (20 bp):
GGCGGTCAATCGGCCAGACG
Found at i:15298697 original size:887 final size:887
Alignment explanation
Indices: 15296298--15308525 Score: 12369
Period size: 887 Copynumber: 13.7 Consensus size: 887
15296288 GGGTCCCCCT
* * *
15296298 CTACGCTGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * * *
15296363 ACATCTTCATATTTCTACCGTGGCAATACCATTTTTCTAGCTTGTAAATTCATACAATGGTCCTT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* * * **
15296428 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTCAAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * * *
15296493 TTTTATGGTTCGGGATTTTTAAAATTTTTTTAGAAGGACTTTTGGCCCCAAACTTGGTAGATGTG
196 TTTTACGGTTCGAGATTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
15296558 ATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
261 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
15296623 GTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
326 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
15296688 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCAATAT
391 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
15296753 AAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCTCCCCGGCACCTCACGATC-
456 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACCC-CCCCGAC-CCCCCCGATCG
* * * * * * **
15296817 TCCGGAACCCCAATGCCGTCAGTCAGGTTATTCGACGATGGTGTCTCGAAGAAGAAAAATGTGGC
517 T-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGC
*
15296882 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT----C--G---G-TC-----C--G
581 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGG
* * *
15296930 G--T---CT--G-AT-CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAA
646 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * ** * * **
15296986 CGTACAGGTGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGAAGAGTATCAATCGGGTCCCCCTC
711 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
** * * *
15297051 TATATGCTATCGATCCTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
776 TACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * ** *
15297116 CGTATGCCTAAGCCCACCGATGAAACGATCGGGCGGGCGAACAGGCA
841 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * * *
15297163 CTACGCCGACCAGAGAGGCGAGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGAGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** * * *
15297228 ACATCTTCATATTTCAACGATGCCAATGCCATTTTTCTTGCTTGTAAATTCATACAATGCTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* * **
15297293 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCATGATTTTCAAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * **
15297358 TTTTATGGTTC-AGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTCACCCCCAAACTTGGTAGAC
196 TTTTACGGTTCGA-GATTTTTT-AAATTTTTTCAGAAGGAGTTTT-GGCCCCAAACTTGGTAGAC
* *
15297422 ATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
258 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15297487 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCT
322 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15297552 ATAAAATCTCAAATGCTTTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
387 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15297617 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCC-ATC
452 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGACCCCCCCGATC
* * * * *
15297681 GTCGAAACCCTAATGCCGCAGGTCAGGTTCTCCGACGATGGTGTCCCGACAAAGAAAAATGCGGC
516 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGC
* * ** * *
15297746 ACCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAATCCTCGGTCC-GGTCTGATCTTAGACT-
581 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCTGGTCCGATCTTAGACTG
*
15297809 GGAATGAACTCCGTATGCTTAGA-TAGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
645 GGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *** *
15297873 AGCGTGCGGGCGCTCAGCCAGCTATAGGGGTGGGAAGCGCAAGCCAGGGATCAACCGGGTCTCCC
709 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * ** *
15297938 TCTACGTGCTGCCGATCCTGTTGTCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAAC
774 TCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC
* *
15298003 TCCGTATGGCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAGCGGGCA
839 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
15298052 CTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGT
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
15298117 GCATCTTCATATTTTTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCTT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* *
15298182 TAAGCCTTCATGTGAAGTTTCATCGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
15298247 TTTTACGGTTCGAGATTTTTTTAATTTCTTTCAGAATGAGTTTTGGCCCCAAGCAC-T-GTAGAT
196 TTTTACGGTTCGAGATTTTTTAAATTT-TTTCAGAAGGAGTTTTGGCCCCAA--ACTTGGTAGAC
* * *
15298310 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAACGAAAAACTCGAAGTGTACAAGAT
258 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15298375 TTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
323 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15298440 TAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
388 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15298505 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACCCCCCCGACCCCCCCGATCGT
453 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCCGATCGT
* * * * ** * *
15298570 CGGAGCCCCAATGTCGCCAGTTAGGTTCTCCGGTGATGGTGTCCCAAGGAAGAAAAATACGGCAC
518 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCAC
* * *
15298635 CAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-------------CC---CTTAGCCT----
583 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGGA
*
15298680 A-G---TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG-GAC
648 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-C
* * * * * * * **
15298738 GTGCGGGTGCTCATCCGGCCAAAAGGGCAGGAGGCGGGAGGCACAAGTCGAGGATCAGTCAAGTC
712 GTGCGGGCGCTCAGCCGGCC---A--G-AGG-GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * *
15298803 CCTCTCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
770 CCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
* * * * ** * *
15298868 GAAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTG
835 GAACTCCGTATGC-----CT---AA-G----CC--A-ACCGACG--AA---ACG-AGCGGGCGGG
* *
15298933 -GGG-GTG-T
878 CGGGCGGGCA
* * * * * * * ** *** ** *
15298940 TTA-GTCGGCCAGAGGGGTGAGATGCGTAAGCCGGGGATCGATCA-GGTCCCTCTCTGCATGCT-
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT-AGGGT-GGTAGGTGGGT-TTA
* * * * * *** ** * *
15299002 GCCGATCCTGCTGCTACA-ACCTTCGGTC-TGGTCCAAT--C-TTAGACTGGGAATG-AACTCCG
63 GGC-A-CAT-CT--T-CATA-TTTCTGCCAT-G-CCAATGCCATTTTTCT-GGCTTGTAAATTC-
* ** ** * ** * ** *** * *
15299061 TATGCCTAA-GCCAACCGACGAAACGAGC-GAATGGGCGGGCGGGCACTACGTCGACCAGA-GAG
117 -AT-AC-AATG--GTCC--CTTAA-G-CCTTCATGTG-AAG-TTTCA-T--G--G-CAAGACGAC
* ** * *** ** ** * * ** * * * *
15299123 GCGGGATGCATAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTA-GG--C-AGA-TCTTCATAT
165 TC-GTTTTC-T-A-TTTTTCA-CGAT--TTTTGAAACT--TTTTACGGTTCGAGATTTTTTAAAT
** ** *** ** * * * *
15299183 TTCTGCCATGCCAATGCCGTTTTTCTGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCTA
221 TT-TTTCA-G--AA-G--GAGTTT-TGGC-CCCAAA--C-T----TGGTAGACGTGATCCTTGTA
* ** * * *** *** * ** ** * *
15299247 TGAAGTTTCATGGAAAGACTACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACG-GTTC
270 T---TTTTGTTGGCATG-C-A--C----AAAAAAATTCA-G---CTAAAAAC--TCGAAGTGTAC
* * * * * * *
15299311 GAGATTTTTTTA-AATTTTTTCAAAAAGATTTTTTGCCCCAAACTTGGT-AGACGTGATCCTTGT
318 AAGATTTTGTGACCA---TTTGAAAAA-A--GTGT-CCCC--A-TT--TCAGAC---A--CTT-T
*** ** * * * * ** ****
15299374 -ATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAA-G-TGTACAAGATTTTGTGA-
365 AATGGCTACTGGCA-G--C-AAAC----CTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * * ******* * * * * ** ** *
15299435 --C-C-A--TTTGAAAAAAGTATCTCCATTTCAAAAACTTTAATGG-CTACTGGCAGCAAAC-TT
421 TTCTCGAGGTTTG-ATGAGGGA--T--AGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATC
* * * ** ** * *** **** * ** * * ** **
15299492 GTA-A-AATCT-CAAATACTCTTTA---AGGGGGT-GT-GAGTTCCCGAGGTTTGATGAGGGAT-
480 GCACATCATGTGCGCACCCCCCCGACCCCCCCGATCGTCG-GAACCCCA---ATGCCGCCGG-TC
*** ** * * * ** **
15299548 AGG-GGGCC-AATATAAGG-G-CCAAGTAC-CAG-CACCTATC-GCACATCATGTGCGTACACCA
540 AGGTTCTCCGACGAT--GGTGTCC-CG-ACGAAGAAAAATA-CGGCAC--CA---GC--ACA-TG
** *** * * * * ** *
15299606 CCCG-GCCACCCCGATCAACAGAACC-TCAATTTCGC-CGGTCAGGTTCTTCGATGGTGGCATCC
592 CCCGAGCC-CAGC-ATGTGCTG--CCGT-AA---CCCTCGGCCTGG-TC--CGATCTTAG-A---
* *
15299668 CGGGGAA-GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACT
642 CTGGGAATGAACTCCGTATGCTTAGACT-GG---G-A------ATG---A-AC------T---C-
* * * * *
15299732 TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCCGCTCAGCCGGCCATAAGGGTGGGATG
682 -CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * *
15299797 CGCAAGTCGGGGATCGATCGAGTCTTCCTCTATGTGCTACCGATCCTGCTGCAGCAACCCTCGAT
746 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGAT
* * ** ** * *
15299862 CCGGTCTAAT-TATAGACTGCGAATGAACTCTATATGCCTAAGCCAACCGGTGAAACAAGTGGGC
811 CCGGTCTGATCT-TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
*
15299926 GGGCGGGCAGGCA
875 GGGCGGGCGGGCA
* * *
15299939 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTCGTTGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
15300004 ACATCTTCATATTTCTGACATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* *
15300069 TAAGGCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
15300134 TTTTACGATTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT--ACAT
196 TTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
15300197 GATCCTTGTTTTTTTGTTGGCATGGATGAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATT
260 GATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
15300261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGAAGAAAACCTGT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
** * *
15300326 AAAATCTCAAACACTCTTTAAGGAGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
15300391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACAACCCCCCGGCCCCCCCGATTG
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--CCCCCCGACCCCCCCGATCG
* * * * *
15300456 TCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGAAGAAAAAAAATACGGCA
517 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * *
15300521 CCAGCATATGCCCG-GCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGG
* *
15300585 AATGAACTCCGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
647 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * *
15300649 ATGTGTGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTGGGT-CCCC-
712 GTGCG-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCT
* * * * * *
15300711 CT-C-TG----C-A---TGCTACCACAACCCTCGGTCTGGTCCGATCTTATACTGGGAATGAACT
775 CTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* *
15300766 CCGTATGCCTAAGCCAACCGGCGAAACGA----GCGGGCGGGCGGTCA
840 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * *
15300810 CTACGTCGGCCAGAGAGTCGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
15300875 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* *
15300940 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
** * * * *
15301005 TTTTATAGTTC-AGGAATTTTTAAAATTTTTCCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACT
196 TTTTACGGTTCGA-GATTTTTTAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
15301069 TGATCCTTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
259 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
15301134 TTG-GACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
15301198 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
15301263 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCG
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGACCCCCCCGATCG
* * * * * **
15301328 CCGAAAACCCAATGCCGCCGGTTAGGTTCTCCGACGATGGTGTCTCGGTGAAGAAAAATACGGCA
517 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
* *
15301393 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC--GTTCGATCTTAGACTGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCTGGTCCGATCTTAGACTGG
* *
15301456 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG
646 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
15301521 CGTGTGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAACAGAGGATCGGCCGGGTCCCCCTC
711 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * ** * * *
15301586 TACGTGCTACCGATCCTGTTGCTGCAACCCTC-AGTTTGAT-TCAATCTTAGACTAGGAATGAAC
776 TACGTGCTACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAAC
* * * * * * *
15301649 T-CGTATGCCTAAGCCAACCGATGAAACGGGCGGGCAGACGGGTGAGAA
839 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
** * * *
15301697 CTACTTCGACCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
15301762 ACATCTTCATATTTATGCCATGCTAATGCCATTTTTCTGGCTTGTAAATCCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
15301827 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
15301892 TTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
196 TTTTACGGTTCGAGA-TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
15301957 GATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
15302021 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGGAGCAAACCTGTA
325 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
15302086 AAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATA
390 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
15302151 TAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGTCCCCCCC-ATC-A
455 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCC-CGACCCCCCCGATCGT
* * * * *
15302214 CAAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGGTGTCTCGACGAAGAAAAATGCAGCA
518 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
** *
15302279 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCAATCTTAGACTGGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGG
* *
15302344 AATGGACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
647 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
15302409 GTACGGGCGCTCAGTCGGCCAGAGGGGTGCGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
712 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * *
15302474 GCATTCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTCAGACTGGGAATGAACTCC
777 ACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
*
15302539 ATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
842 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* *
15302585 CTACGCCGGCCAGAGAGGCGGGATGCCCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
15302650 ACGTCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCTT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* **
15302715 TACGCCTTCATGTGAAGTTTCATGGCAAGACGACTTATTTTCTA-TTTTC-C--------AAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
15302770 TTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACGT
196 TTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
15302835 GATCCTTATATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
15302900 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCGGCAAACCTGCA
325 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
15302965 AAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAAT
390 AAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
15303030 ATAGGGGCCAAGTACCAGCACCCATCGCACTTTAAGTGCGCACACCCCCCGCCCCCCCCCGATCG
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCG-ACCCCCCCGATCG
* * * *
15303095 TCGGAACCCCAATGCAGTCGGTCAGGTTCTCCGGCGATCGTGTCCTCGACGAAGAAAAATACGGC
517 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCC-CGACGAAGAAAAATACGGC
* *
15303160 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC-GATCCGATCATAGACTG
581 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCTGGTCCGATCTTAGACTG
* ** **
15303224 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACATATTAAACGA
645 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * ** * *
15303289 GCGTACGGACACTCAGCCGGACAGAGGGGTAGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCT
710 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * ** * * *
15303354 CTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTAACCTTAGACTGGGAATAAACT
775 CTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
15303419 TCGTATGCCTAAGCCAACCGATGAAAAGAGCGGGCGGGCGGGCGAGCA
840 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
*** * * *
15303467 CTACATTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTTGGTTTATGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
15303532 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* * *
15303597 TAAGCCTTCATGTGGAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
15303662 TTTTACAGTTCGGGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
196 TTTTACGGTTCGAGATTTTT-TAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15303727 GAT-CTAGTATATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
260 GATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
15303791 TTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
15303856 AAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGAGGGCCAAT
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
15303921 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCGCCCCGACTCCCCCGATCA
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGACCCCCCCGATCG
* * * ** * * * *
15303986 CCAGAACCCCAATGTCGTGGGTCAGGTTCACCGACGATGGTGTCCCGACGAAGAAGAGTGCGGCA
517 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * * *
15304051 CCAGCACATGCCCAAGCCCAGCATGTGCTACCGTAACCCTTGGTCTGGTCCAATCTTAGACTGGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGG
* ** * *
15304116 AATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGTTTAAGTCAACGCACGAAATGAGC
647 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * **
15304181 GTGCGGGCGCTCAGTCGACCAGAGGGGCGAGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCT
712 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * *
15304246 ACGTGCTTCCGATTCTACTACCGCAACCCT-TAGT-CGGATTTGATCTTAGACTGGGAATGAACT
777 ACGTGCTACCGATCCTGCTGCCGCAACCCTCGA-TCCGG-TCTGATCTTAGACTGGGAATGAACT
* *
15304309 CCGTATGCCTAAGCCAACTGACG-AA--A-CGGGCGGACGGGCGGGCA
840 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
15304353 CTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * *
15304418 ACATCTTCATATCTCTGCCATGCCAACACCATTTTTCTGGCCTGTAAATTCATATAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
** * * * *
15304483 TAAGCCTTCATGTGAAGTTTCATACCAAGACGACTCATTTTCCATTTTTCATGATTTTCGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
15304548 TTTTACGGTTCTG-GATTTTTTAAAATTTTTCTAGAAGGAGTTTTGGTCCCAAACTTGGTAGACG
196 TTTTACGGTTC-GAGATTTTTTAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
15304612 TGATCCTCGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
259 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
15304677 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
15304742 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGAGCCAAT
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
15304807 ATAGGGGCCAAGTACCAGCAACCACCGCACATTATGTGCGCACACCCACCCCCCCAGCCACCCCC
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--C-CCCCCCGA-CC-CCCCC
* * *
15304872 GATCGTCGGAACCACAATGCTGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATG
512 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATA
* * *
15304937 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCC-GGTCCGATCTTAG
577 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCTGGTCCGATCTTAG
* * *
15305001 ACTGGGAA-GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACGTAAGTCAACCCATGAA
641 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * ** *
15305065 ACAAGCATGCGGGCGCTCAGTTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCC
706 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * * * * * * *
15305130 CCCTCTACGTGTTGCTGATCCTGCTCCCGTATCCCTCGATCCAGTCCGATCTTGGACTGGGAATG
771 CCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
* * *
15305195 AACTCTGTATGCCTAAGCCAACCGACG-AA--A-TGGGCGGGCGGGCGTGCA
836 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
15305243 CTACGCCGGCCAGAGAGGAGGGATGCGCAAGCCATGGATCGATAGGGTCGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
15305308 ACATCTTCATATTTGTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* * **
15305373 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
15305438 TTTTACGATTTCG-GATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTACACG
196 TTTTACG-GTTCGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
15305502 TGACCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATT
259 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
15305566 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
15305631 AAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAC
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
15305696 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCCGACCCCCTTCGATC
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACCCCCCCGACCCCC-CCGATC
* * * * *
15305761 GTCAGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGGTGTCCTCG-CGAAAAAAAATACGG
516 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCC-CGACGAAGAAAAATACGG
* * * * * * * *
15305825 TACTAGCACATGCTCGAGTCTAGCATGTGCTACCGAAACCCTCGGTCC-GGTCCGATCTTAGATT
580 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCTGGTCCGATCTTAGACT
* * *
15305889 GGGAACGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
644 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
15305954 AGCGTGTGGGCGCTCAGCCTGCTAGAGGGGCGAGATGCGCAAGTCGAGGATCGG-CTAGGTCCCC
709 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCC
* *** * ** * ** * *
15306018 TTCTACGTGCTGTTGATACTAATGCCGCAACCCTC-AGTCCGATCCAATCTTAGATTAGGAATGA
773 CTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGA
* * * * *
15306082 ACCCCGTATGCCTAAGCCATCTGACG-AA--A-CGGGTGGACGGGCGGGCA
837 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* *
15306129 CTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
15306194 ATATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* * *
15306259 TAAGCCTT--TGTG-AGTTT-ATGCCAAGACGACTCG---T-TA--ATTCACGATGTTTGAAAC-
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
15306313 -ATTAC-G---G-GA----TTAAA--ATTCCAGCAAGGA----TGGCCCCAAAC-TGGTAGACGT
196 TTTTACGGTTCGAGATTTTTTAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15306361 -AT--TTGTA--TTTG-TGGCCTGCACAAAAAAATTCA-ATAAAAACTCGAAG-GTACAAGA-TT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
15306417 TGTGACCATTTG-AAAAAGTGTCCTCA-TTCGGACACTTTAATGCCTACTGGTCAGCAAACCTG-
325 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGT
* * *
15306479 -AAATC-CAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-TGGATAGGTGGCCAAT
389 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
15306541 ATAAGGGCCAAGTACCACGCACCCATCGCACCATCATGTCCGCACACCCCCCCCGACTCCCTAGA
454 ATAAGGGCCAAGTACCA-GCACCCATCGCA-CATCATGT--GCGCA-CCCCCCCGACCCCCCCGA
* **
15306606 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATACG
514 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACG
* * * * * *
15306671 GCACCAGCACATGCCCGAGCCCAGCATGTGCCGTCGTAACCCTCAGTCTGATCTGATCTTAGACT
579 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACT
* * * * * *
15306736 AGGAATGAAGTTCGTATGCTTAGACTGGGAATGAACGCCATATGCCTAAGTCAACCCACAAAACG
644 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * ** * * * *
15306801 AGCGGGCGGGCCCTTAGAAGGCCAGAGGTGCGGGATGCGCAAGCCGTGGATCAGTCAGGTCCCCC
709 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * * * * * * *
15306866 TCTGCATGCTACTGATCCTACTACCGCTACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAAC
774 TCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC
* *
15306931 TCCGTATGCCTAAGCCAACCGACGAAAC-AG-GCGGCGAGCAGGCGGGCA
839 TCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGCGGGCGGGCGGGCA
* * *
15306979 CTATGCCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
15307044 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
*
15307109 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
15307174 TTTTACGATTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
196 TTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
15307239 AATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
15307304 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTATA
325 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
15307369 AAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCACAAGGTTTGATGAGGGATAGGGGGCCAATA
390 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
15307434 TAAGGG-CAATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTG-TCCCCCCTATCG-
455 TAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGACCCCCCCGATCGT
* * * * *
15307496 CTGGAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACAAAGAAAAATGCGACA
518 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * *
15307561 CCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGG
* * * *
15307626 AATGAACTCCATATGCTTAGA-TCGAGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAG
647 AATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
15307690 CGTGCGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
711 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * ** *
15307755 TGCGTGCTGCCGATCCTGCTGCCATAACTCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACT
776 TACGTGCTACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACT
*
15307819 CCGTATGCCTAAGCCAACCGACGAAAC-A---GGCGGGCGGGCAGGCA
840 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
15307863 CTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT-GGTGGGTTTAGGT
1 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
15307927 ACATCTTCATATTTTTGCCATGTCAATTCCATTTTTCTGGCTTGTAAATTCATACACTGGTCCCT
66 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
*
15307992 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTGAAACT
131 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
15308057 TTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
196 TTTTACGGTTCGAGA-TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
15308122 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15308187 TGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
325 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
15308252 AAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTGGAGGTTTGATGCA-GGATAGGGGGCCAAT
390 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAAT
* * * ** *
15308316 ATATGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGGACACCCCCTCGGTCCCCCC-ATCA
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CACCCCCCCGACCCCCCCGATCG
* * * * * * * *
15308380 CCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATAGTGTCCCGACGAAGAAACATGCGACA
517 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
** * *** * *
15308445 CCAGCACATGCCTAAGCCCAGCATGTGCTACCGTAACCCTC-AAATGGGTCTGATCTTATACTGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCT-GGTCCGATCTTAGACTGG
*
15308509 AAATGAACTCCGTATGC
646 GAATGAACTCCGTATGC
15308526 CTAAGCCGAC
Statistics
Matches: 9425, Mismatches: 1460, Indels: 937
0.80 0.12 0.08
Matches are distributed among these distances:
845 30 0.00
846 54 0.01
847 300 0.03
848 37 0.00
849 29 0.00
850 157 0.02
851 8 0.00
852 25 0.00
853 18 0.00
854 15 0.00
855 5 0.00
857 2 0.00
858 11 0.00
859 11 0.00
860 15 0.00
861 1 0.00
862 69 0.01
863 8 0.00
864 99 0.01
865 202 0.02
866 29 0.00
867 46 0.00
868 201 0.02
869 92 0.01
870 12 0.00
871 247 0.03
872 334 0.04
873 137 0.01
874 20 0.00
875 63 0.01
876 16 0.00
877 19 0.00
878 100 0.01
879 118 0.01
880 99 0.01
881 45 0.00
882 467 0.05
883 443 0.05
884 262 0.03
885 166 0.02
886 979 0.10
887 1302 0.14
888 303 0.03
889 621 0.07
890 708 0.08
891 330 0.04
892 237 0.03
893 11 0.00
894 9 0.00
895 7 0.00
896 2 0.00
897 4 0.00
898 1 0.00
899 2 0.00
900 5 0.00
901 5 0.00
902 2 0.00
903 1 0.00
907 5 0.00
908 7 0.00
909 1 0.00
910 1 0.00
911 14 0.00
912 13 0.00
913 20 0.00
914 6 0.00
915 3 0.00
916 10 0.00
917 5 0.00
918 7 0.00
919 10 0.00
920 10 0.00
921 6 0.00
922 12 0.00
923 10 0.00
924 14 0.00
925 25 0.00
926 7 0.00
927 4 0.00
928 18 0.00
929 14 0.00
930 4 0.00
931 13 0.00
932 7 0.00
933 14 0.00
934 11 0.00
935 3 0.00
936 6 0.00
938 4 0.00
939 2 0.00
940 5 0.00
941 13 0.00
942 11 0.00
943 11 0.00
944 12 0.00
945 6 0.00
946 2 0.00
947 4 0.00
948 1 0.00
949 4 0.00
950 3 0.00
951 4 0.00
952 2 0.00
953 7 0.00
954 15 0.00
955 7 0.00
956 26 0.00
957 20 0.00
958 4 0.00
959 6 0.00
960 18 0.00
961 22 0.00
962 11 0.00
963 13 0.00
964 3 0.00
965 15 0.00
966 1 0.00
968 3 0.00
969 4 0.00
970 4 0.00
971 4 0.00
972 2 0.00
973 6 0.00
974 1 0.00
975 7 0.00
976 8 0.00
977 6 0.00
978 1 0.00
979 7 0.00
980 4 0.00
981 1 0.00
982 1 0.00
983 1 0.00
984 1 0.00
985 2 0.00
986 5 0.00
987 5 0.00
988 3 0.00
990 3 0.00
991 2 0.00
992 7 0.00
993 10 0.00
994 10 0.00
995 8 0.00
996 9 0.00
997 10 0.00
998 5 0.00
999 18 0.00
1000 39 0.00
1002 3 0.00
1003 2 0.00
1004 1 0.00
1005 2 0.00
1009 1 0.00
1010 5 0.00
1013 3 0.00
1014 2 0.00
1017 1 0.00
1018 86 0.01
1019 2 0.00
1020 1 0.00
1022 1 0.00
1023 1 0.00
1024 74 0.01
1025 144 0.02
1026 64 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCGAGATTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGT
GCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
Found at i:15298890 original size:26 final size:26
Alignment explanation
Indices: 15298854--15298906 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298844 CTGGTCTGAT
15298854 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
15298880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15298906 C
1 C
15298907 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15299705 original size:26 final size:26
Alignment explanation
Indices: 15299670--15299739 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
15299660 TGGCATCCCG
15299670 GGGAA-GAACTTCGTATGCTTAGACT
1 GGGAATGAACTTCGTATGCTTAGACT
*
15299695 GGGAATGAACTCCGTATGCTTAGACT
1 GGGAATGAACTTCGTATGCTTAGACT
*
15299721 GAGAATGAACTTCGTATGC
1 GGGAATGAACTTCGTATGC
15299740 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 5 0.12
26 36 0.88
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
GGGAATGAACTTCGTATGCTTAGACT
Found at i:15300615 original size:25 final size:26
Alignment explanation
Indices: 15300574--15300625 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15300564 CTGGTTCGAT
*
15300574 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15300600 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15300625 C
1 C
15300626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15301476 original size:26 final size:26
Alignment explanation
Indices: 15301446--15301498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15301436 TCCGTTCGAT
15301446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15301472 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15301498 C
1 C
15301499 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15302369 original size:26 final size:26
Alignment explanation
Indices: 15302333--15302385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15302323 CTGGTCCAAT
**
15302333 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15302359 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15302385 C
1 C
15302386 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15303246 original size:26 final size:26
Alignment explanation
Indices: 15303217--15303267 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15303207 GATCCGATCA
*
15303217 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
15303243 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
15303268 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:15304144 original size:26 final size:26
Alignment explanation
Indices: 15304105--15304156 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15304095 CTGGTCCAAT
*
15304105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15304131 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15304157 TTTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15305024 original size:25 final size:26
Alignment explanation
Indices: 15304996--15305045 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
15304986 CCGGTCCGAT
15304996 CTTAGACTGGGAA-GAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15305021 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15305046 ACGTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15305917 original size:26 final size:26
Alignment explanation
Indices: 15305881--15305933 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15305871 CCGGTCCGAT
*
15305881 CTTAGATTGGGAACGAACT-TCGTATG
1 CTTAGACTGGGAACGAACTCT-GTATG
*
15305907 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCTGTATG
15305933 C
1 C
15305934 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTGTATG
Found at i:15306779 original size:26 final size:26
Alignment explanation
Indices: 15306728--15306780 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306718 CTGATCTGAT
* *
15306728 CTTAGACTAGGAATGAAGTTCGTATG
1 CTTAGACTAGGAATGAAGTCCATATG
*
15306754 CTTAGACTGGGAATGAACG-CCATATG
1 CTTAGACTAGGAATGAA-GTCCATATG
15306780 C
1 C
15306781 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAGTCCATATG
Found at i:15309187 original size:701 final size:698
Alignment explanation
Indices: 15307792--15309226 Score: 2091
Period size: 701 Copynumber: 2.1 Consensus size: 698
15307782 CTCTCAGTCC
15307792 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGG
*
15307857 CAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTGGTGGGTT
66 CAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTGGTGGGTT
* * * * *
15307922 TAGGTACATCTTCATATTTTTGCCATGTCAATTCCATTTTTCTGGCTTGTAAATTCATACACTGG
131 TAGGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATAG
15307987 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTG
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTG
* * * *
15308052 AAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGAGA-TTTTTTAAATTTTTCCAGAAGGATTTTAGGCCCCAAACTTGGTA
*
15308117 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15308182 GATTTTGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTACAAACACTTTAATGGCTACTGGCAGCAAAC
* * *
15308247 CTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTGGAGGTTTGATGCAGGATAGGGGGC
455 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCAGGATAGGGGGC
* * * *
15308312 CAATATATGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGGACACCCCCTCGGTCCCCCCA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCA
*
15308377 TCACCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATAGTGTCCCGACGAAGAAACATGCG
585 TCACCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATAGTGTCCCGACGAAGAAAAATGCG
* * *
15308442 ACACCAGCACATGCCTAAGCCCAGCATGTGCTACCGTAACCCTCAAAT-G
650 ACACCAGCACAAGCCCAAGCCCAGCATGTGCTACCGCAACCCTC-AATCG
* * * * **
15308491 GGTCTGATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCGACTGACGAAAGGGGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGG
* * * * *
15308556 CGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGGT
66 CAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGT-GGTGGGT
** * * * * *
15308621 TTAGGCGTATCTTGATATTTCTGCCGTG-CGGATGCCATTTTTTTGGCTTGTAAATTCATGCAAT
130 TTAGGCACATCTTCATATTTCTGCCATGTC-AATGCCATTTTTCTGGCTTGTAAATTCATACAAT
* *
15308685 AGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTT
194 AGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTT
*
15308750 TGAAACTTTTTAGGGTTCGAGA-TTTTTAAATTTTTCCAGAAGGAGTTTTAGGCCCCAAACTTGG
259 TGAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTCCAGAAGGA-TTTTAGGCCCCAAACTTGG
* * * *
15308814 TCGACGGTTATACCTTTTTATTTTTG-TGGCAAGCACAACAAAATTTCAAGCTAAAAACTCGAAG
323 TAGAC-GTGAT-CC-TTGTATTTTTGTTGGCAAGCACAA-AAAAATTC-AGCTAAAAACTCGAAG
* *
15308878 TGTACAAGATTTTGTGACCA-TTG-AAAAAGTG-CCCCATTACAAACACTTTAATGTCTACTGGC
383 TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTACAAACACTTTAATGGCTACTGGC
15308940 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGGTGTGAGTTCTCGAGGTTTGATG-AGGG
448 AGCAAACCTATAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGCA-GG
15309004 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-
511 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCG
** * * * * * *
15309067 GCCCCTCCCGATCGTCGGAACCCTAATGTCGCGGGTTAGGTTCTCCGGCGATGGTGTCCCGATGA
576 GCCCC-CCC-ATCACCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATAGTGTCCCGACGA
* *
15309132 AGAAAAATGC-AGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCT
639 AGAAAAATGCGA-CACCAGCACAAGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAATCG
*
15309192 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15309227 TTAGATTGGG
Statistics
Matches: 657, Mismatches: 65, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
698 21 0.03
699 138 0.21
700 209 0.32
701 233 0.35
702 20 0.03
703 36 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (698 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGG
CAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTGGTGGGTT
TAGGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATAG
TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTG
AAACTTTTTACGGTTCGAGATTTTTTAAATTTTTCCAGAAGGATTTTAGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAATGTCCCCATTACAAACACTTTAATGGCTACTGGCAGCAAACC
TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCAGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCAT
CACCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATAGTGTCCCGACGAAGAAAAATGCGA
CACCAGCACAAGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAATCG
Found at i:15310710 original size:890 final size:888
Alignment explanation
Indices: 15308491--15317003 Score: 10706
Period size: 890 Copynumber: 9.6 Consensus size: 888
15308481 CCCTCAAATG
* * * * *
15308491 GGTCTGATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCGACTGACG-AA--AG-GGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *
15308552 CGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** * * ** * *
15308617 TGGTTTAGGCGTATCTTGATATTTCTGCCGTGCGGATGCCATTTTTTTGGCTTGTAAATTCATGC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* *
15308682 AATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
15308747 TTTTGAAACTTTTTAGGGTTCGAGA-TTTTT-AAATTTTTCCAGAAGGAGTTTTAGGCCCCAAAC
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGCCCCAAAC
* * * * * *
15308810 TTGGTCGACGGTTATACCTTTTTATTTTTG-TGGCAAGCACAACAAAATTTCAAGCTAAAAACTC
325 TTGGTAGAC-ATGAT-CC-TTGTATTTTTGTTGGCATGCACAA-AAAAATTC-AGCTAAAAACTC
* * *
15308874 GAAGTGTACAAGATTTTGTGACCA-TTG-AAAAAGTG-CCCCATTACAAACACTTTAATGTCTAC
385 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15308936 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGGTGTGAGTTCTCGAGGTTTGATGA
450 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGA
15309001 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
514 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
15309066 C-GCCCCTCCCGATCGTCGGAACCCTAATGTCG-CGGGTTAGGTTCTCCGGCGATGGTGTCCCGA
579 CGGCCCC-CCCGATCGTCGGAACCCCAATGCCGAC-GGTCAGGTTCTCCGGCGATGGTGTCCCGA
* * * * * ** *
15309129 TGAAGAAAAATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGG
642 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CG
* * * * *
15309194 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA-ATCTGTACGGCTAAG
706 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAG
* * * * * * *
15309258 TCAACCCACGAAACGAACGTTCGGTCGCTTAGCCGGCCAGAGGGGCGGGATACACAAGCTGAGGA
770 TCAACCCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * ** *
15309323 TCGGTCGGGTAACCCTCTGCGTGCTGA-CGATCTTGTTACCA-CAACCCTT-GGT-T
835 TCGATCGGGTCCCCCTCTGCGTGCT-ACCGATCCTACT-GCAGCAA-CCTTCGGTCT
* **
15309376 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-TAGGCGG
1 -GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * * * *
15309440 ACAGGCGTGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAAG
65 GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
15309505 TGGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATA
130 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATA
* * *
15309570 CTATGGTCCCTTAAGCCTTTATGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGA
195 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
15309635 TTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTGTTTCAGATGGAGTTTTGGCCCCAAAC
260 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * *
15309700 TTGATAGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAATTTCGGCTAAAAACTCGAAGT
325 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15309765 GTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
15309830 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGAGGGAT
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGAT
* * *
15309895 AGGTGTCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGGCC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
15309960 CCCCCGATCGTCGGAACCCCATTACCGACGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAA
584 CCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAA
*
15310025 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATC
649 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATC
*
15310090 TTAGACTGGTAATGAACTCTGTATGCTTAGA-TCGGGAATGAACTTCGTATGCCTAAGTCAACCC
713 TTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGAATGAACTTCGTATGCCTAAGTCAACCC
* * * * * * * *
15310154 ACGAAACAAGCGTGCGGTCGCTCAGCAGGCCAGAGGGACAGAATACGCAAACCGGGGATCGATCT
777 ACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* *
15310219 GGTCCCCCTCAGTGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
842 GGTCCCCCTCTGCGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
* * * * ** *
15310266 GGTCTGATCTTAGACTGGGAATGAACTCTGAATGCTTAAGCCAACTAACAAAACGAGCGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * * *
15310331 TGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGAGCAAGCCGTGGATAGATAGAGTGGCAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
15310396 GGGTTTAGGTACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCAAAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
*
15310461 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * *
15310526 TTTTGAAACTTTTTGTGGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCGCACAC
261 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
15310590 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
325 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
15310655 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
15310720 GCGAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
15310785 GGGGACCAATATAAAGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGTACACCCCCCCCGGC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGC
* * * * *
15310850 CACCCCCGATTGTTGGAACCCCAATGCC-ATCGGTCGGGTTCTCCGACGATGGTGTCTCGGA-GA
583 C-CCCCCGATCGTCGGAACCCCAATGCCGA-CGGTCAGGTTCTCCGGCGATGGTGTC-CCGACGA
* * * * * *
15310913 AGAAAAATATGACACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAACCCTCGGTTCGGTTC
645 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCCGTCC
*
15310978 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCA
709 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCA
* * ** * *
15311042 ACCCATGAAACGAGTGTGCGGGGGCTCAACCGGCCAGACGGTG-GGGATGCGCAAGCCGGGGATC
773 ACCCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATC
* * ** * * *
15311106 GATCGGGTCCCCCACTGCGTACTGTCGATCCTACTGCTGTAACCCTCGGTCT
837 GATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
* * * * *
15311158 GGTCCGATCTTAGACTAGGAATGAACTTCGTATACCTAAGCCAACTGATGAAACGGACGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GA---GCGGG
* *
15311223 CGGGCTGGCGGGCACTACGCCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
62 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * * *
15311288 AGGCGGGTTTAGGCACATTTTTATATTTCTGCCATGCCAATGTCATTTTTCAGGCTTGTAAATTC
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTC
*
15311353 ATACGATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
192 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
15311418 TGATTTTTGAAACTTTCTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
257 TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
15311483 AACTTGGAAGACATGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCGGCTAAAAACTCGA
322 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
15311548 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
387 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
15311613 GCAGCGAACCTGTAAAATCTTAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGTG
452 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
15311678 ATAGGGGACCAATATAAAGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGTACACCCCCCCC
517 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCC
* * * * * *
15311743 GGCCACCCCCAATTGTTGGAACCCCAATGCCGTCGGTCGGGTTCTCCGACGATGGTGTCCCGGA-
580 GGCC-CCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCC-GAC
* *
15311807 GAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA----C---CC-T-
643 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTC
15311863 CG---TT---CT-GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
708 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* * * * *
15311912 ACCCTCAAAATGAGCGTACGGGT-GCTCAGTCGGCCAGAGGGG-GGGATGCGCATA-CCGGGGAT
773 ACCCACGAAACGAGCGTGC-GGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGAT
* * * * ** * *
15311974 CGGTCAGAT-CCCCTCTACGTATTGCTGATCCTACTGCCA-CAACCTTCGGTCT
836 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTG-CAGCAACCTTCGGTCT
* * * * ** * * *
15312026 GGTCCAATCTTAGACTGTGAATGAACTTCGTATGCCTAAGACAAATGATGAAATGGGCGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *
15312091 CGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
15312156 GGGTTTAGGCACATCTTCATATTTCTATCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * * * *
15312221 AATGGTCCCTTAAGACTTCATGTGAAGTTTCATTGCAGGATGACTCGTTTTCTATTTTTCACGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
15312286 TTTTGAAACTTTTTA-GTATTCTG-GATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAA
261 TTTTGAAACTTTTTACG-GTTC-GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * *
15312349 TTTGGTAGACATGATCCTTGTATTTTTGTCGACATGCACAAAACAATTCAGCTAAAAACTCAAAG
324 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
15312414 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTCCAGACATTTTAATGGCTACTGGT
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
15312479 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCGTTCTCGAGATTTGATGAGGCAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
15312544 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCTGCCCCG
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC--CCCCG
* * ** * * * * * *
15312609 ACCAACCCCGATCACCGAAACCCCAATGTCGTCGGTCAGGTTCTCTGTCGATGGTGTCCCGAAGA
581 GCC-CCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGA
* * * *
15312674 AGAAAAATATGGCA-CAGTACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGCCCGATCC
645 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCC
* * * *
15312738 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTGAACTCCGTAAGCCTAAGTCAA
709 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * * *
15312803 CCCACGAAACGAGCGTGCGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG-
774 CCCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * *
15312867 GCTTGGTCCCCCTCTACGTGCTATCGATCCTGA-TGCCGCAACCCTT-GGTCC
839 TC-GGGTCCCCCTCTGCGTGCTACCGATCCT-ACTGCAGCAA-CCTTCGGTCT
* *** * * *
15312918 GATAAAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGGGTGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
15312983 CGGGCGGGCATTACGCAGGCCAGAGAGGCGGGATGCGCAAGTCATGGATCGATTGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
15313048 GGG-TTAGGCACATCTTCATATTTCTGCCGTGCCAACGCCATTTTTCTAGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * *
15313112 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
15313177 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTAGAATGAGTTTT-GCCCCAAACT
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
15313241 TGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
326 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
15313306 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACCTTAATTGCTACTGGCAG
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
15313371 CAAACCTGTAAAATCTCAAACGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15313436 GGGG-GATATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGC
521 GGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGC
* * * ** *
15313500 CACCCCGATCATCGGAACCCCAATGCCAACGGTCAGGTTCTTTGGTGATGGTGTCCCGACGAAGA
583 CCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGA
** * * * * * *
15313565 AAAATACGGTGCCAGCCCATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGATCTGGTCTGAT
648 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGAT
* * * * *
15313630 CTTAGACTGGGAATGAGCTCTGTATGCTTAGACAGGGAATGAACTCCATATGCCTAAGTCAGCCC
712 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
* * * ** * *
15313695 ACGAAACGAGCGTGCGGGT-GTTCAGTCTGCCAGAGGGATGGGATGCGTAAGCCGGGGATCGGTC
777 ACGAAACGAGCGTGC-GGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * * *
15313759 GGGTCCCCCTCTGCATGCTGCCGATCCTACTGCTGTAACCCTCGATCT
841 GGGTCCCCCTCTGCGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
* *
15313807 GGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGGGCGGACGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA--------AC--G
* * *
15313872 TAGGCGGGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGAT
56 -A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * *
15313937 AGGGTGGTAGGTTGGTTTAGGCACATTTTCATATTTCTGCCCTGCCAATGCCATTTTTCTGGCTT
119 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15314002 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGATTCGTTTTCT
184 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
15314067 ATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTT
249 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTT
** * * * *
15314132 TGTTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAACAATTCAGCTAA
314 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
15314197 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
379 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15314262 GGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
444 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
15314327 GATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGTACATCATGTGTGCACA
509 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** * * * * *
15314392 CCCCCCGGCCCCCCCGATCACCGGATCCCCAATGCCGCCGTTCAGGTTTCTTCGACGATGGTGTC
574 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGG-TTCTCCGGCGATGGTGTC
* * * * *
15314457 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAGCCCTCGGT
638 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
15314522 CCCATCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAAACTGGGAATGAACTCCGTATGCC
703 -CCGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTTCGTATGCC
* * * **
15314586 TAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCG
766 TAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
15314651 AGGATCGATCGAGTCCCCCTCTGCGTGCTATCGATGCTGCTGCCA-CAACCCTT-AGTCT
831 GGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTG-CAGCAA-CCTTCGGTCT
* *
15314709 GGTCCGATCTGAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * ***
15314774 CGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGCAAATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
15314839 AGGTTTACGCACATCTTCATATTTCTGCCATGCCAATGCTATTTTTTTGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * * * *
15314904 AATGGTCCCTTAAGCCTTCATATGAATTTTCATGGCAAGAAGACTCATTTTCTATTTTTTATGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
15314969 TTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACC
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
15315034 TGGTAAACATGATCCTTGTATTTTTGTTTGCATGCACAAAAAAATTCTGTTAAAAACTCGAAGTG
326 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
15315099 TACAAGATTTTATGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15315164 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGATGTGAGTTTTC-ATGGTTTGATGAGGGATA
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATA
* * *
15315228 GGGAGCCAATATATGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGG-C
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCC
* * * * * * ** *
15315292 CCCCCGATCGTAGGAACCCCAATGTCGTCGGTTAGGTTCTCCGGTGATGGAGTTTCGGCGAAGAA
584 CCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAA
* * *
15315357 AAATAAGGCACCAGCACATGCCCGAGCCCAG-ATCTGCTACCGCAA--C-C--T-CG---G----
649 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCT
* *
15315408 T---CT-GG--T---C-C-G-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
714 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
* * * * *
15315460 GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGGATGCTCAAGCCGAGGATCGATCGGG
779 GAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * * *
15315525 TCCCCCTCTGCATGCTGCCAATCCTACTGCCGCAACCCTCAGTCC
844 TCCCCCTCTGCGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
* * * * *
15315570 GATCAGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---AGTGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
** * * *
15315631 CGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGTCGTAGATTGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
15315696 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTTTCTTGTAAATTCAAAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* *
15315761 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT-ATTTTCTATTTTTCATTAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
*
15315825 TTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAAC
261 TTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
15315889 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCAGCTAAAAACTCGAAG
325 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAG
* *
15315953 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTATTGGC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
15316018 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* **
15316083 AGGGGGCCAATATAATGGCCAAGTA-CAGCACCCATCGCACATCATGTGATCACACCCCCCCGGC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * ** * * * *
15316147 CGCCCTGATCGTAAGAACCCCAATGTCGCCTGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
583 CCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGA
* * * * *
15316212 AAAATACAGCACCAGCACATTCCCGAGCCCAACATGTGCTGTCGCAA--C-C-AT-CG---G-TC
648 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATC
15316268 -----C-------G-A-TCTG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
713 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
* * * **
15316317 CGAAACGAGTGTGCGGGT-GCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
778 CGAAACGAGCGTGC-GGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
15316381 GGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCTACCCTT-GGTCC
842 GGTCCCCCTCTGCGTGCTACCGATCCTACTGCAGC-AACCTTCGGTCT
* ** * *
15316428 AGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* ** * ** *
15316493 TGGGCAAGCACTACACCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15316558 GGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * * *
15316623 AATGGTCCCTTAAGCCTTTATGTGAAGTTTAATGCCAAGACGACTCGTTTTCTATTTTTCACGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
*** * * *
15316688 TTTTGAAACTTTTTAAAATTCGAGATTTTTGAAAATTTGTTCAGAAGGAGTTTTGGACCCAAACT
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
15316753 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATAT-AGCTAAAAACGTAG-AG
326 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGCTAAAAAC-TCGAAG
* ** * * * *
15316816 TGTACAAGAGTTTGTGACCATTTGAAAAGTGTTTCCCCATTCCAGACACTTTAATGGCTATTGGT
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
15316881 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
15316946 AGGGGGCCAATATAATGGCCAAGTACCAACACCCATCGTACATCATGTGCGCATACCC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
15317004 TCGGTCCGAT
Statistics
Matches: 6715, Mismatches: 769, Indels: 309
0.86 0.10 0.04
Matches are distributed among these distances:
855 35 0.01
856 348 0.05
857 186 0.03
858 178 0.03
859 8 0.00
860 5 0.00
861 178 0.03
862 176 0.03
863 268 0.04
864 532 0.08
865 69 0.01
867 1 0.00
868 82 0.01
869 28 0.00
870 61 0.01
871 10 0.00
872 1 0.00
873 2 0.00
874 4 0.00
877 3 0.00
878 1 0.00
879 2 0.00
880 4 0.00
881 3 0.00
883 4 0.00
885 1 0.00
886 83 0.01
887 25 0.00
888 132 0.02
889 974 0.15
890 1244 0.19
891 224 0.03
892 438 0.07
893 16 0.00
894 2 0.00
895 1 0.00
896 602 0.09
897 2 0.00
899 1 0.00
901 106 0.02
902 431 0.06
903 243 0.04
904 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (888 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTA
GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
CCCCTCTGCGTGCTACCGATCCTACTGCAGCAACCTTCGGTCT
Found at i:15311017 original size:26 final size:26
Alignment explanation
Indices: 15310981--15311033 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15310971 TCGGTTCGAT
15310981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15311007 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15311033 C
1 C
15311034 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15312770 original size:26 final size:26
Alignment explanation
Indices: 15312741--15312790 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15312731 CCGATCCGAT
15312741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15312767 CTTAGACTGGGATTGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15312791 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15313681 original size:26 final size:26
Alignment explanation
Indices: 15313630--15313682 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313620 CTGGTCTGAT
* * **
15313630 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACAGGGAATGAACTCCATATG
15313656 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
15313682 C
1 C
15313683 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:15314568 original size:26 final size:26
Alignment explanation
Indices: 15314532--15314584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15314522 CCCATCCGAT
* *
15314532 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15314558 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15314584 C
1 C
15314585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15319730 original size:61 final size:61
Alignment explanation
Indices: 15319424--15320137 Score: 860
Period size: 61 Copynumber: 11.9 Consensus size: 61
15319414 TCTTGTGTGG
** * * *
15319424 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCTAA
** * * * *
15319481 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAAA-TTCATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCTAA
* * *
15319538 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT--ATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTT-ATTTCTAA
*
15319598 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTT-ATTTCTAA
* *
15319660 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCTAA
** * * * *
15319721 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAACCTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCT-AA
* *
15319779 GGAAAATTGATACTTTCAACCTTTCCTCACAAATCCTTTTTTTTT-AAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTT-ATTTCTAA
*
15319840 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCC-TTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTT-ATTTCTAA
* * *
15319901 GGAAAATTGATACTTTCAACCTTTCCTTACAAATCCTTTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCC-TTTTTTTTTGAAACTTTATTTCTAA
** * * * *
15319963 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAACCTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCT-AA
*
15320021 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCC-TTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTT-ATTTCTAA
* *
15320082 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTTAAA-TTTATTT
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTT
15320138 TTATTTAAAA
Statistics
Matches: 582, Mismatches: 52, Indels: 43
0.86 0.08 0.06
Matches are distributed among these distances:
57 84 0.14
58 98 0.17
59 11 0.02
60 80 0.14
61 175 0.30
62 119 0.20
63 15 0.03
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (61 bp):
GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTATTTCTAA
Found at i:15319880 original size:242 final size:242
Alignment explanation
Indices: 15319424--15320126 Score: 1213
Period size: 242 Copynumber: 2.9 Consensus size: 242
15319414 TCTTGTGTGG
* ** * * *
15319424 GGAAAATTGATACTTTCAACTTTTCC--CCAAA--AATATTTTTTGGAAATTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTTATTTCTAAGGAA
* * *
15319485 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAA-ATTCATTTTTAAGGAAAATTGAT
66 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGAT
* *
15319549 ACTTTCAACTTTTCCTCAAAAAT-ATTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTT
131 ACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTT
15319613 TCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAA
196 TCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAA
15319660 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTTATTTCTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTTATTTCTAAGGAA
15319725 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGAT
66 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGAT
* *
15319790 ACTTTCAACCTTTCCTCACAAATCCTTTTTTTTTAAACTTTGATTTCCAAGGAAAATTGATACTT
131 ACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTT
15319855 TCAACTTTTCCTCACAAATCC-TTTTTTTTGAAACTTTGATTTCCAA
196 TCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAA
*
15319901 GGAAAATTGATACTTTCAACCTTTCCTTACAAATCCTTTTTTTTTTGAAAATTTATTTCTAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCTTACAAATCC-TTTTTTTTTGAAAATTTATTTCTAAGGA
15319966 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGA
65 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGA
15320031 TACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACT
130 TACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACT
*
15320096 TTCAACTTTTCCTTACAAATCCTTTTTTTTT
195 TTCAACTTTTCCTCACAAATCCTTTTTTTTT
15320127 TAAATTTATT
Statistics
Matches: 442, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
236 26 0.06
238 4 0.01
240 66 0.15
241 101 0.23
242 237 0.54
243 8 0.02
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (242 bp):
GGAAAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTTATTTCTAAGGAA
AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACCTTGATTTTCAAGGAAAATTGAT
ACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTT
TCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAA
Found at i:15320109 original size:181 final size:182
Alignment explanation
Indices: 15319424--15320137 Score: 881
Period size: 181 Copynumber: 4.0 Consensus size: 182
15319414 TCTTGTGTGG
**
15319424 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAAA-TTT-ATTTTTAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATAATATTTTTT-GAAACTTTGATTTCCAAGGA
* * * * * **
15319484 AAATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTGGAAA--TTCATTTTTAAGGAAAAT
65 AAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
* * * *
15319545 TGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTTGAAACTTTGATTTCCAA
130 TGATACTTTCAACTTTTCCTACAAACATTTTTTTTTTGAAAATTT-ATTTCTAA
** *
15319598 GGAAAATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTTGAAACTTTGATTTCCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAAT-AATATTTTTTGAAACTTTGATTTCCAAGGA
* * *
15319663 AAATTGATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTGAAAATTT-ATTTCTAAGGAAAA
65 AAATTGATACTTTCAACTTTTCCTCACAAATCC-TTTTTTTTGAAACTTTGATTTCCAAGGAAAA
* * * * ** *
15319727 TTGATACTTTCAACTTTTCC-CCAAA-AATATTTTTTGGAACCTTGATTT-TCAA
129 TTGATACTTTCAACTTTTCCTACAAACATTTTTTTTTTGAAAATTTATTTCT-AA
* ** * *
15319779 GGAAAATTGATACTTTCAACCTTTCCTCACAAATCCTTTTTTTTTAAACTTTGATTTCCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATAATATTTTTTGAAACTTTGATTTCCAAGGAA
15319844 AATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATT
66 AATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATT
* *
15319909 GATACTTTCAACCTTTCCTTACAAATCCTTTTTTTTTTGAAAATTTATTTCTAA
131 GATACTTTCAACTTTTCC-TACAAA-CATTTTTTTTTTGAAAATTTATTTCTAA
* * *
15319963 GGAAAATTGATACTTTCAACTTTTCC-C-CAAA-AATATTTTTTGGAACCTTGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCACAAATAATATTTTTTGAAACTTTGATTTCCAAGGAA
15320025 AATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATT
66 AATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATT
*
15320090 GATACTTTCAACTTTTCCTTACAAATCCTTTTTTTTTT--AAATTTATTT
131 GATACTTTCAACTTTTCC-TACAAA-CATTTTTTTTTTGAAAATTTATTT
15320138 TTATTTAAAA
Statistics
Matches: 479, Mismatches: 42, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
174 26 0.05
175 1 0.00
176 4 0.01
177 4 0.01
178 10 0.02
179 62 0.13
180 92 0.19
181 165 0.34
182 31 0.06
183 38 0.08
184 45 0.09
185 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (182 bp):
GGAAAATTGATACTTTCAACTTTTCCTCACAAATAATATTTTTTGAAACTTTGATTTCCAAGGAA
AATTGATACTTTCAACTTTTCCTCACAAATCCTTTTTTTTGAAACTTTGATTTCCAAGGAAAATT
GATACTTTCAACTTTTCCTACAAACATTTTTTTTTTGAAAATTTATTTCTAA
Found at i:15320161 original size:8 final size:8
Alignment explanation
Indices: 15320145--15320179 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
15320135 TTTTTATTTA
15320145 AAAAAAAT
1 AAAAAAAT
*
15320153 AAAATAAT
1 AAAAAAAT
15320161 -AAAAAAT
1 AAAAAAAT
15320168 AAAAAAAT
1 AAAAAAAT
15320176 AAAA
1 AAAA
15320180 GTTAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAAAAAT
Found at i:15320166 original size:15 final size:15
Alignment explanation
Indices: 15320146--15320215 Score: 61
Period size: 15 Copynumber: 4.4 Consensus size: 15
15320136 TTTTATTTAA
*
15320146 AAAAAATAAAATAAT
1 AAAAAATAAAAAAAT
15320161 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
**
15320176 AAAAGTTAAAGAAAAGT
1 AAAAAATAAA-AAAA-T
15320193 -AAAAATAAGATAAAGAT
1 AAAAAATAA-A-AAA-AT
15320210 AAAAAA
1 AAAAAA
15320216 ATATTAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
15 22 0.50
16 10 0.23
17 6 0.14
18 6 0.14
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:15320256 original size:15 final size:15
Alignment explanation
Indices: 15320146--15320260 Score: 56
Period size: 15 Copynumber: 7.2 Consensus size: 15
15320136 TTTTATTTAA
15320146 AAAAAATAAA-ATAAT
1 AAAAAATAAATA-AAT
*
15320161 AAAAAATAAAAAAAT
1 AAAAAATAAATAAAT
** *
15320176 AAAAGTTAAAGAAA-
1 AAAAAATAAATAAAT
15320190 AGTAAAAATAAGATAAAGAT
1 A--AAAAATAA-AT-AA-AT
*
15320210 AAAAAA-ATATTAAAT
1 AAAAAATA-AATAAAT
* *
15320225 AAATCTAATCTAATAAAT
1 AAA--AAAT-AAATAAAT
15320243 AAAAAATAAATAAAT
1 AAAAAATAAATAAAT
15320258 AAA
1 AAA
15320261 TTAAAAAAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
14 1 0.01
15 39 0.51
16 12 0.16
17 5 0.07
18 17 0.22
19 1 0.01
20 1 0.01
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (15 bp):
AAAAAATAAATAAAT
Found at i:15321226 original size:4 final size:4
Alignment explanation
Indices: 15321217--15321271 Score: 64
Period size: 4 Copynumber: 14.5 Consensus size: 4
15321207 ATATTACAAA
15321217 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAT -AAT ATAAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT
*
15321262 AAAT ATAT AA
1 AAAT AAAT AA
15321272 CTATATACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
3 12 0.26
4 31 0.67
5 3 0.07
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
AAAT
Found at i:15321276 original size:8 final size:8
Alignment explanation
Indices: 15321217--15321284 Score: 54
Period size: 8 Copynumber: 8.9 Consensus size: 8
15321207 ATATTACAAA
*
15321217 AAATAAAT
1 AAATATAT
*
15321225 AAATAAAT
1 AAATATAT
*
15321233 AAATAAAT
1 AAATATAT
15321241 AAATA-AT
1 AAATATAT
15321248 -AATATA-
1 AAATATAT
15321254 ATAATA-AT
1 A-AATATAT
15321262 AAATATAT
1 AAATATAT
*
15321270 AACTATAT
1 AAATATAT
*
15321278 ACATATA
1 AAATATA
15321285 AATCTATTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
6 4 0.08
7 8 0.15
8 40 0.77
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (8 bp):
AAATATAT
Found at i:15323079 original size:25 final size:26
Alignment explanation
Indices: 15323036--15323090 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
15323026 TCGGTCCGAT
* **
15323036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCACATG
15323062 CTTAGACT-GGAAGGAACTCCACATG
1 CTTAGACTGGGAAGGAACTCCACATG
15323087 CTTA
1 CTTA
15323091 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCACATG
Found at i:15323790 original size:890 final size:888
Alignment explanation
Indices: 15321436--15323953 Score: 3480
Period size: 875 Copynumber: 2.8 Consensus size: 888
15321426 ACTGCTGCTG
* ** * * *
15321436 CAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACCGACG--
1 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
* *
15321499 A-AA-CGAG-CGGGCGGACGGGCGAGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
66 ATAAGCG-GTCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
15321561 ATCGATAAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTATGCCATGCCAATGCCATTTTTC
130 ATCGATAGGGTGGTAGGTGGGTTTAGG-ACAACTTCATATTTATGCCATGCCAATGCCATTTTTC
* * *
15321626 TGGCTTGTAAATTCATATAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACGACTCA
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
15321691 TTTTCTATTTTTCACGATTTTTGAAACTTTTTTTGGTTCGGGATTTTGTAAAATTTTTTCAGAAG
259 TTTTCTATTTTTCACGATTTTTGCAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAA
* * * *
15321756 GAGTTTTGGCCCAAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
15321821 AGCTAAAAAATCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15321886 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
15321951 AGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
15322016 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCTCAATACCACCAGTCAGG-T-TC--------
583 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGGATGTG
* * * *
15322071 T-CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGTCGTAACCCTCG
648 TCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * ***
15322135 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCTGTATGC
713 GTTCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCACATGC
* * * ** * *
15322200 CTAAGTCAACCCACGAAATGAGTGTGCGGGCGTTTAGCCGGTCAGAGGGGCGGGATGCATAAGTC
778 CTAAGTCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGACCAGAAGGGCGGGATGCACAAGTC
* * * * ** * * *
15322265 GGGGATCGATCGGGTCCCCCTTTATGTGCTGTCGTTCCTGCTGCCA
843 CGGGATCGACCCGATCCCCCTCCACGTGCTGTCGATCCTGCTACCA
** *
15322311 CAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACA-A
1 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-AGA
* * * * *
15322375 AATGAGC--T--GGCGGGCAGGCGGGCACTACGTCAGCCAGAGATGCGGGATGCGCAAGCTGTGG
65 AATAAGCGGTCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
15322436 ATCGATAGGGTGGTAGGTGGGTTTAGGAAAATCTTCATATTTTTGCCATGCCAATGCCATTTTTC
130 ATCGATAGGGTGGTAGGTGGGTTTAGGACAA-CTTCATATTTATGCCATGCCAATGCCATTTTTC
15322501 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * *
15322566 TTTTCTATTTTTTACGA-TTTT-CAAACCTTTTTAGGGTTCCGGATTTTTTAAAATTTTTTCAAA
259 TTTTCTATTTTTCACGATTTTTGC-AA-CTTTTTACGGTT-CGGATTTTTTAAAATTTTTTCAGA
* * * *
15322629 AAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTGTTGGCATGTACAAAAACAT
321 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
15322694 TCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
15322759 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
15322824 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
516 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
15322889 TGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCTGTGA
581 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCT-CTG-GA
* *
15322954 TTGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
644 -TGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
15323019 CCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAAGGAACTCCA
708 CCTCGGTTCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCA
* * *
15323083 CATGCTTAAGTCAACCCACGAAATGAGTGTACGGGCGCTCAGCCTACCA-AAGGGCTGGGATGCG
773 CATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGACCAGAAGGGC-GGGATGCA
* * * *
15323147 CAAG-CCGGGATC-AGCCCGATCCTCCTCCGCGTGCTG-CAGATCCTTCTACCG
837 CAAGTCCGGGATCGA-CCCGATCCCCCTCCACGTGCTGTC-GATCCTGCTACCA
**
15323198 CAACTTTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
1 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
* ** * *
15323263 ATAAGCGGTCGGGCGGGCGGGCGGGCACTGCACCGGCTAAAGAGGCGGGATGCGCAAGCCGTGGA
66 ATAAGCGGTCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* ** * *
15323328 TCGATAGGGCGGTAGGTGGGTTTAGGCACAACCACATATTTCTGCCATGCCAATGCCATTTTTTT
131 TCGATAGGGTGGTAGGTGGGTTTAGG-ACAACTTCATATTTATGCCATGCCAATGCCATTTTTCT
* *
15323393 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCATGTGAAGTTTCATGGCAAGATGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* *
15323458 TTTCTATTTTTCATGATTTTTGCAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAAG
260 TTTCTATTTTTCACGATTTTTGCAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAAG
*
15323523 AG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
** * * *
15323587 AATAAAAACTCAAAGTGTGCAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
15323652 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
15323717 GTTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
15323782 GCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GATCAGGTTCTCTGACGAT
584 GCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAG-TCAGGTTCTCTG--GAT
* ** * *
15323846 GGTGTCTCGGTGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
645 -GTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
15323911 CAT--GATCTGGTCAAATTTTAGACTAGGAATGAACTCCGTATGC
709 C-TCGGTTC-GGTCAGATCTTAGACTGGGAATGAACTCCGTATGC
15323954 CTAAGCCAAT
Statistics
Matches: 1458, Mismatches: 143, Indels: 68
0.87 0.09 0.04
Matches are distributed among these distances:
874 8 0.01
875 563 0.39
876 2 0.00
877 2 0.00
878 2 0.00
879 1 0.00
886 3 0.00
887 98 0.07
888 62 0.04
889 101 0.07
890 261 0.18
891 344 0.24
892 10 0.01
893 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
ATAAGCGGTCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGACAACTTCATATTTATGCCATGCCAATGCCATTTTTCTG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGCAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCAGAAAGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGGATGTGTCC
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
CGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCACATGCCTA
AGTCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGACCAGAAGGGCGGGATGCACAAGTCCGG
GATCGACCCGATCCCCCTCCACGTGCTGTCGATCCTGCTACCA
Found at i:15324635 original size:701 final size:700
Alignment explanation
Indices: 15323297--15324673 Score: 2182
Period size: 701 Copynumber: 2.0 Consensus size: 700
15323287 GCACTGCACC
15323297 GGCTAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACAACCA
1 GGCTAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACAACCA
*
15323362 CATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
15323427 CCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGCAACTTTTTACA
131 CCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
*
15323492 GTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 GTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTGGCCCAAAACTTGGTAGACGTGATCCTTG
* * *
15323557 TATTTTTGTTGGCATGCAAAAAAAAATTCAAATAAAAACTCAAAGTGTGCAAGATTTTGTGATCA
261 TATTTTTATTGGCATGCAAAAAAAAATTCAAATAAAAACTCAAAGTGTACAAGATTTTGTGACCA
*
15323622 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
326 TTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15323687 AATGCTTTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
391 AATGCTTTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
* *
15323752 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCC
456 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGAAACCC
* * * * * **
15323817 CAATGCCGTCGATCAGGTTCTCTGACGATGGTGTCTCGGTGAAGAAAAATGCGGTACCAGCACAT
521 CAATGCCGTCGATCAGGTTCTCCGACCATGGTGTCCCGATGAAGAAAAATACGACACCAGCACAT
*
15323882 GCCCGAGCCCAGCATGTGCTACCGCAACCCATGATCTGGTCAAATTTTAGACTAGGAATGAACTC
586 GCCCGAGCCCAGCATGTGCTACCGCAACCCATGATCTGGTCAAATCTTAGACTAGGAATGAACTC
* * *
15323947 CGTATGCCTAAGCCAATCGACGAAACGAGCAGGTGGATGGGCACTACGCT
651 CCTATGCCTAAGCCAACCCACGAAACGAGCAGGTGGATGGGCACTACGCT
* * * **
15323997 GGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCTAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACAACCA
15324062 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
15324127 TCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTATG
131 CCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
*
15324192 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTT
196 GTTCGAGATTTTTTAAAATTTTTTCAGAAAGAG-TTTGGCCCAAAACTTGGTAGACGTGATCCTT
* * ** *
15324257 GTATTTTTATTGGCATGGC-CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 GTATTTTTATTGGCAT-GCAAAAAAAAATTCAAATAAAAACTCAAAGTGTACAAGATTTTGTGAC
* *
15324321 CATTTGAAAAAAGTGACTCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCT
324 CATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
15324386 CAAATTCTTTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
389 CAAATGCTTTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGG
* * *
15324451 CCAAGTACCAGCACCCATCACACATGATGTGTGCACAGCCCCTCGGCCCCCCCGATCGCCGAAAC
454 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGAAAC
* * *
15324516 CCTAATGCCGTCGGTCAGGTTCTCCGGCCATGGTGTCCCGATGAAGAAAAATACGACACCAGCAC
519 CCCAATGCCGTCGATCAGGTTCTCCGACCATGGTGTCCCGATGAAGAAAAATACGACACCAGCAC
* * * *** *
15324581 ATGCCCGAGCCCAGCATGTGCTATCGTAACCC-TCGGTCTGGTCTGGTCTTAGACTGGGAATGAA
584 ATGCCCGAGCCCAGCATGTGCTACCGCAACCCAT-GATCTGGTCAAATCTTAGACTAGGAATGAA
*
15324645 CTCCCTATGCCTAAGTCAACCCACGAAAC
648 CTCCCTATGCCTAAGCCAACCCACGAAAC
15324674 AAGCGTGCGG
Statistics
Matches: 615, Mismatches: 59, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
700 214 0.35
701 399 0.65
702 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (700 bp):
GGCTAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACAACCA
CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
CCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
GTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTGGCCCAAAACTTGGTAGACGTGATCCTTG
TATTTTTATTGGCATGCAAAAAAAAATTCAAATAAAAACTCAAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTTTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGAAACCC
CAATGCCGTCGATCAGGTTCTCCGACCATGGTGTCCCGATGAAGAAAAATACGACACCAGCACAT
GCCCGAGCCCAGCATGTGCTACCGCAACCCATGATCTGGTCAAATCTTAGACTAGGAATGAACTC
CCTATGCCTAAGCCAACCCACGAAACGAGCAGGTGGATGGGCACTACGCT
Found at i:15325534 original size:26 final size:26
Alignment explanation
Indices: 15325486--15325539 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15325476 GATCTGATCT
**
15325486 TAGACTGGGAATGAAATTTGTATGCC
1 TAGACTGGGAATGAAATCCGTATGCC
*
15325512 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAAATCCGTATGCC
15325538 TA
1 TA
15325540 AGTCAACCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAAATCCGTATGCC
Found at i:15328453 original size:26 final size:26
Alignment explanation
Indices: 15328424--15328476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15328414 CCGGTCCGAT
*
15328424 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15328450 CTTAGACTGGTAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15328476 C
1 C
15328477 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15329129 original size:892 final size:880
Alignment explanation
Indices: 15327404--15329330 Score: 2700
Period size: 892 Copynumber: 2.2 Consensus size: 880
15327394 CCCCGGCCCC
* * * **
15327404 CCCGATCGCCGAAACCCCAATGCCACCGGTCAAGTTCTCCGACGATGGTGTCCCGGTGAAGAAAA
1 CCCGATCGCTGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCCCGACGAAGAAAA
* * * *
15327469 ATACAGCACCAGCACCTGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-TGATCCAGTCCGATCT
66 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCAGTCCGATCT
* *
15327533 TGGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCAC
130 TAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
15327598 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGAGACGGGATGCGTAAGCCGGGGATCGAACGGG
195 AAAACAAGCGTGCGGGCGCTCAACCGGCCAAAGAGACGGGATGCGCAAGCCGGGGATCGAACGGG
** * *
15327663 TCCCCCTCTACGTACTATCGATCCTGCTGCCGTAACCCTCGGTTTGGTTCGATCTTAGACTGGGA
260 TCCCCCTCTACGTACTATCGATCCTGCTGCCACAACCCTCAGTTCGGTTCGATCTTAGACTGGGA
* *
15327728 ATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGAGCGGGCACTACGCCGGC
325 ATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGAGCGGGCACTACGCCGGC
* * * * *
15327793 CAGAGAGGGGGGATGCACAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCAT
390 CAGAGAGGCGGGATACACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCAT
** *
15327858 ATTTCTACCGTTCCACTGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
455 ATTTCTACCGCGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
15327923 TGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
520 TGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC-TTTTAAGGTT
* * *
15327988 TGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACATGGTAAACGTGATCCTTGTA
584 CGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACATGGCAAACATGATCCTTGTA
* * * *
15328053 TTTTTGTTGGCACGCACAAAACAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGCCCTTT
649 TTTTTGTTGGCACGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
15328118 TGAAAAACCTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTATAAAATCTCAAA
714 TGAAAAACCTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAA
*
15328183 TGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAA
779 TGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
15328248 GTACCAGCACCCATCGCACATGATGTGCGCACACCCCACCCCACCT
844 GTACCAGCACCCATCGCACATGATGTGCG--CA---CA---C-CCT
** * *
15328294 CCCTCCGATCGCTGGAACCCCAACACCGCCGGTCAAGTTCTACGGCGATGGTGTCCCGACGAAGA
1 --C-CCGATCGCTGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCCCGACGAAGA
* * * * *
15328359 AAAATGCGGCTCCAGCACATGGCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGAT
63 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
* * *
15328424 CTTAGATTGGGAATGAACTCCGTATGCTTAGAC-TGGTAGTGAACTCCGTATGCCTAAGTTAACC
128 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGG-AATGAACTCCGTATGCCTAAGTCAACC
* * * **
15328488 CACAAAACAAGCGTGCGGGCGCTCAACCGGCCAGAG-GGCGGGATGCGCAAGCTGGGGATCGGCC
192 CACAAAACAAGCGTGCGGGCGCTCAACCGGCCAAAGAGACGGGATGCGCAAGCCGGGGATCGAAC
** * * *
15328552 GGGTCCCCCTCTGTGTGCTGTCGATCTTGCTGCCACAACCCTCAGTTCGGTTCGATCTTAGACTG
257 GGGTCCCCCTCTACGTACTATCGATCCTGCTGCCACAACCCTCAGTTCGGTTCGATCTTAGACTG
* * * *
15328617 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GAGCGAGCGGGTGGGCACTATGC
322 GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGA-CGAGCGAGCGGGCACTACGC
* *
15328681 CGGCCAGAGAGGCGGGATACGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAGGAACATCT
386 CGGCCAGAGAGGCGGGATACACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCT
*
15328746 TCATATTTCTACCGCGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
451 TCATATTTCTACCGCGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
15328811 TTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAA-TTTTAA
516 TTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTCAAAACTTTTAA
* * *
15328875 GGTTCGGGATTTTTTAAAATTTTTTTTGAAAA-GAGTTTTGGCCCCAAACTTGGCAGACATGATC
580 GGTTCGGGATTTTTTAAAA--TTTTTTCAAAAGGAGTTTTGGCCCCAAACATGGCAAACATGATC
* * *
15328939 CTTGTATTTTTTTTGGCATGCACAAAA-AAGTTCAGCTAAAAACTCGAAGTGTACATGATTTTGT
643 CTTGTATTTTTGTTGGCACGCACAAAACAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
** * * *
15329003 GACCATTTGAAAAAGGTGTCCTCATTTCCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
707 GACCATTTGAAAAACCTGTCCCCATTT-CAGACACTTTAATGGCTACTAGCAGCAAACCTATAAA
*
15329067 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
771 ATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
** * *
15329132 AGGGCCAAGTACCAGCACTTATCGTACATTATGTGCGCACACCCT
836 AGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCT
* * * * * *
15329177 CCCGATCACTTGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATAGCGTCCCGACGAAGAAAA
1 CCCGATCGCTGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCCCGACGAAGAAAA
* * * * * *
15329242 ATGTGGCACCAGCACATTCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCTGATCTT
66 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGATCTT
15329307 AGACTGGGAATGAACTCCGTATGC
131 AGACTGGGAATGAACTCCGTATGC
15329331 CTAAGTCAAC
Statistics
Matches: 915, Mismatches: 111, Indels: 30
0.87 0.11 0.03
Matches are distributed among these distances:
880 131 0.14
881 1 0.00
883 3 0.00
884 1 0.00
887 2 0.00
890 2 0.00
891 27 0.03
892 534 0.58
893 213 0.23
894 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CCCGATCGCTGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACA
AAACAAGCGTGCGGGCGCTCAACCGGCCAAAGAGACGGGATGCGCAAGCCGGGGATCGAACGGGT
CCCCCTCTACGTACTATCGATCCTGCTGCCACAACCCTCAGTTCGGTTCGATCTTAGACTGGGAA
TGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGAGCGGGCACTACGCCGGCC
AGAGAGGCGGGATACACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATA
TTTCTACCGCGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTAAGGTTCG
GGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACATGGCAAACATGATCCTTGTATT
TTTGTTGGCACGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAACCTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATG
CTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATGATGTGCGCACACCCT
Found at i:15329608 original size:165 final size:164
Alignment explanation
Indices: 15329275--15329727 Score: 456
Period size: 167 Copynumber: 2.8 Consensus size: 164
15329265 GCCCAGCATG
* * * * *
15329275 TGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTACCGTAACCCTCGATCCAATCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
15329340 CCCACGAAACGAGTGTGCGGGC-GC--TCA--AC-CGGCCAGAGGGGCGGGATGCGCAAGCCGAG
65 CCGACGAAACGAGCGGGCGGGCGGCGGGCACTACGCGACCAGAGAGGCGGGATGCGCAAGCCGAG
** * *
15329399 AGTTGGTCGGGTCCCCCTCTGCATGCTACCTATCC
130 AGTCCGCCGGGTCCCCCTCTGCATGCTACCGATCC
* **
15329434 TGCTACCGTAA-CCTCTAT-CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGTAACCCTCGATCCAATCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* *
15329497 CCGATGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCG
65 CCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACG-CGACCAGAGAGGCGGGATGCGCAAGCCG
* ** **
15329562 -GGGATCCGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
128 AGAG-TCCGCCGGGTCCCCCTCTGCATGCTACCGATCC
* * *
15329599 TGCTACCGTAACCCTCGATCCAATCCAATCTTAGACTGGAAATGAACTCCGTAAGCCTAAGCTAA
1 TGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAA
** ** * * *
15329664 TTGACGAAACGAGCGGGCATGCAGGCGGGCACTACGCCGACTAGGGAGGCGGGATACGCAAGCC
65 CCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACG-CGACCAGAGAGGCGGGATGCGCAAGCC
15329728 ATGGATCGAT
Statistics
Matches: 241, Mismatches: 41, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 58 0.24
158 5 0.02
159 12 0.05
161 2 0.01
163 2 0.01
164 2 0.01
165 62 0.26
166 8 0.03
167 90 0.37
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.18
Consensus pattern (164 bp):
TGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGCGGGCACTACGCGACCAGAGAGGCGGGATGCGCAAGCCGAGA
GTCCGCCGGGTCCCCCTCTGCATGCTACCGATCC
Found at i:15330381 original size:26 final size:26
Alignment explanation
Indices: 15330333--15330383 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330323 GGTCCGATAA
* **
15330333 TAGATTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15330359 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15330384 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15331246 original size:26 final size:26
Alignment explanation
Indices: 15331217--15331269 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15331207 CCGGTTTGAT
15331217 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
15331243 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
15331269 C
1 C
15331270 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:15331441 original size:26 final size:26
Alignment explanation
Indices: 15331403--15331453 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15331393 CGGTCTAATC
**
15331403 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTAAGAATGAACTCCGTATGA
* *
15331429 TTAGACTAAGAATTAACTCTGTATG
1 TTAGACTAAGAATGAACTCCGTATG
15331454 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTAAGAATGAACTCCGTATGA
Found at i:15331508 original size:185 final size:185
Alignment explanation
Indices: 15331188--15331546 Score: 504
Period size: 185 Copynumber: 1.9 Consensus size: 185
15331178 GCCCAGTATG
* * * **
15331188 TGCTACCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGG
1 TGCTACCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAACGAACTCCGTATGATTAGACTAA
* *
15331253 GAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAAGCCAGAGG
* * * *
15331318 GGCGGGATGTACAAGCTAGGGATCGGCCGGGTTCCCCTCTGCATACTGCTGATCC
131 GGCGGGATGCACAAGCCAGGGATCGGCCAGGTCCCCCTCTGCATACTGCTGATCC
* * * *
15331373 TGCTATCGTAACCTTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGATTAGACTAA
1 TGCTACCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAACGAACTCCGTATGATTAGACTAA
* * * *
15331438 GAATTAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTC-GGCCAGAT
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG-CAAGCCAGAG
* * *
15331502 GGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCAT
130 GGGCGGGATGCACAAGCCAGGGATCGGCCAGGTCCCCCTCTGCAT
15331547 GAGGGATAGG
Statistics
Matches: 151, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 150 0.99
186 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (185 bp):
TGCTACCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAACGAACTCCGTATGATTAGACTAA
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAAGCCAGAGG
GGCGGGATGCACAAGCCAGGGATCGGCCAGGTCCCCCTCTGCATACTGCTGATCC
Found at i:15331776 original size:26 final size:26
Alignment explanation
Indices: 15331747--15331797 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15331737 TGGTCCGATC
*
15331747 TTAGGCTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
15331773 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15331798 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:15332016 original size:529 final size:529
Alignment explanation
Indices: 15331016--15332076 Score: 1488
Period size: 529 Copynumber: 2.0 Consensus size: 529
15331006 TCGAGGTTTG
*
15331016 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACCC
1 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACCC
*
15331081 CCCGACCCCCCCGATCGCCAGAACCCCAATACCGACGGTTAGGTTCTCCGGCGATGGTGTCCCGG
66 CCCGACCCCCCCGATCGCCAGAACCCCAATACCGACGGTTAGGTTCTCCGGCGATGGTGTCCCGA
* * *
15331146 TGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCCGG
131 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGG
** *
15331211 TTTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
196 TCCGATCTTAGACTGGGAACGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
15331276 CAACCGACGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGGCGGGATGTACAAGCTAGGGAT
261 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGACGGGATACACAAACCAGGGAT
* * * * * * *
15331341 CGGCCGGGTTCCCCTCTGCATACTGCTGATCCTGCTATCGTAACCTTCGGTTCGGTCTAATCTTA
326 CGACCGGGTCCCCCTCTGCATACTGCTGATCCTGCTACCGCAACCCTCGATTCGGTCCAATCTTA
* *
15331406 GACTGGGAATGAACTCCGTATGATTAGACTAAGAATTAACTCTGTATGCCTAAGTCAACCCACGA
391 GACTGGGAATGAACTCCGTATGATGAGACTAAGAATTAACTCCGTATGCCTAAGTCAACCCACGA
* * *
15331471 AACGAGCGTACGGGCGCTCAGTCGGCCAGATGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTC
456 AACGAGCGTACGGGCGCTCAGTCGGCCAAATGGGCGGGACGCGCAAGCCGGGGATCGATCAGGTC
15331536 CCCCTCTGC
521 CCCCTCTGC
*
15331545 ATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
1 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCG--CAC
* * * **
15331609 CCCCCG-GCCCCCCGATCGGCGGAACCCCAATGTC-ATCGGTCT-GGTTCTCCGGCGATGGTGTC
64 CCCCCGACCCCCCCGATCGCCAGAACCCCAATACCGA-CGGT-TAGGTTCTCCGGCGATGGTGTC
** * * *
15331671 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGTAACCCTCGGT
127 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGT
* * *
15331736 CTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCT
192 CCGGTCCGATCTTAGACTGGGAACGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCT
* * * ** * * * * *
15331801 AAGTCAACCCAC-AGAATGAGCGTGCGGGTGTTCAGCCGGTCAGAGGTATGGGATACGCAAACCG
257 AAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGACGGGATACACAAACCA
* ** * *
15331865 GGGATCGATCGGGTCCCCCTCTGTGTGCTG-TCGATCCTGCTGCCGCAACCCTCGA-TCTGGTCC
321 GGGATCGACCGGGTCCCCCTCTGCATACTGCT-GATCCTGCTACCGCAACCCTCGATTC-GGTCC
15331928 AATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAATTAACTCCGTATGCCTAAGTCAA
384 AATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAATTAACTCCGTATGCCTAAGTCAA
* *
15331993 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAATGGGCGGGACGCGCAAGTCGGGGATCGA
449 CCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAAATGGGCGGGACGCGCAAGCCGGGGATCGA
*
15332058 TCGGGTCCCCCTCTGC
514 TCAGGTCCCCCTCTGC
15332074 ATG
1 ATG
15332077 CTACCGATCT
Statistics
Matches: 467, Mismatches: 58, Indels: 14
0.87 0.11 0.03
Matches are distributed among these distances:
528 52 0.11
529 405 0.87
530 10 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (529 bp):
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACCC
CCCGACCCCCCCGATCGCCAGAACCCCAATACCGACGGTTAGGTTCTCCGGCGATGGTGTCCCGA
CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAACGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGACGGGATACACAAACCAGGGAT
CGACCGGGTCCCCCTCTGCATACTGCTGATCCTGCTACCGCAACCCTCGATTCGGTCCAATCTTA
GACTGGGAATGAACTCCGTATGATGAGACTAAGAATTAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTACGGGCGCTCAGTCGGCCAAATGGGCGGGACGCGCAAGCCGGGGATCGATCAGGTC
CCCCTCTGC
Found at i:15332054 original size:185 final size:184
Alignment explanation
Indices: 15331720--15332135 Score: 521
Period size: 185 Copynumber: 2.2 Consensus size: 184
15331710 TAGCATGTGT
* * * **
15331720 TGCCGTAACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGATTAGACTGGGAA
1 TGCCGCAACCCTC-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAA
* * * * * *
15331785 TGAACTCCGTATGCCTAAGTCAACCCACAGAATGAGCGTGCGGGTGTTCAGCCGGTCAGAGGTAT
65 TGAACTCCGTATGCCTAAGTCAACCCACAGAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGTAC
* ** **
15331850 GGGATACGCAAACCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGC
130 GGGACACGCAAACCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGC
*
15331905 TGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAA
1 TGCCGCAACCCTCG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAA
* *
15331970 TTAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGTCGGCCAAATGG-
65 TGAACTCCGTATGCCTAAGTCAACCCACAG-AACGAGCGTGCGGGCGCTCAGCCGGCCAAA-GGT
* * ** * *
15332033 GCGGGACGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCTTGT
128 ACGGGACACGCAAACCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGC
* * *
15332090 TGCCTCAACCCCCTGTCCGGTCCGATCTTAGACTGGGAATGAACTC
1 TGCCGCAACCCTC-GTCTGGTCCGATCTTAGACTGGGAATGAACTC
15332136 TGTGTGCCTA
Statistics
Matches: 198, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
184 2 0.01
185 193 0.97
186 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
TGCCGCAACCCTCGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAAGAAT
GAACTCCGTATGCCTAAGTCAACCCACAGAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGTACG
GGACACGCAAACCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGC
Found at i:15332827 original size:26 final size:26
Alignment explanation
Indices: 15332791--15332840 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15332781 ATCTGATCTT
15332791 AGACTGGGAATGAACTCCATATGCTA
1 AGACTGGGAATGAACTCCATATGCTA
*
15332817 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
15332841 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTA
Found at i:15333713 original size:26 final size:26
Alignment explanation
Indices: 15333665--15333715 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15333655 AGTCTAATCA
**
15333665 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15333691 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15333716 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15335478 original size:26 final size:26
Alignment explanation
Indices: 15335442--15335494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15335432 CCTGTCCAAC
15335442 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
15335468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15335494 C
1 C
15335495 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15335617 original size:890 final size:888
Alignment explanation
Indices: 15331902--15337737 Score: 7427
Period size: 890 Copynumber: 6.6 Consensus size: 888
15331892 CTGTCGATCC
* * ** * * * **
15331902 TGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGATGAGACTAA
1 TGCTGCCGCAACCCTCGGTC-CGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * *
15331967 GAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAATG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * ** * * * * * *
15332032 GGCGGGACGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCTTGTTGCCTCA
130 GGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
* ** * * * *
15332097 ACCCCCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTGTGCCTAAGCCAATC-GACGAAA
195 ACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAAA
* * * * * *
15332161 CGA----ACGGGCGGGCGGGCACTACGCTGGTCAAAGAGGCGGGATGCGGAAGCC---G-TC---
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGAT
* * * * * *
15332215 ------G-A------TTTAGGCACATCTTCATATTTTTGA-AAGGACAATGCCACTTTTCTAGCT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACCATGCCAATGCCATTTTTCTGGCT
*
15332266 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTC
388 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
**
15332331 TATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
453 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTT
**
15332396 TTGGCCCCAAACTTAATAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCT
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
15332461 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAG-GTTCCCCATTTTAGACACTTT
582 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCCATTTCAGACACTTT
15332525 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
646 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
15332590 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT----
711 TTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * ** *
15332651 ------TCCTGGCCCCCCCGATCATCGGAACCCCAATACCGTCAGTCAGGTTCTCCGACGATGGT
775 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGT
* * * **
15332710 GTCCCGGCGAAGAAAAATATGGCACCAGCACAAGCCCGAGCCCATTATG
840 GTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
15332759 TGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTAAGACTGG
1 TGCTGCCGCAACCCTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * *
15332824 GAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCGGCCAGACG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
15332889 GGC-AGGATGCACAAGCCGTGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTTCTGC
130 GGCGA-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGC
** * * * * * *
15332953 AACCCTCGGTCTGGTC-CAGTCTTAGACTGGAAATGAACTCCGTATGTCTAAGCCAACCGACGAA
194 AACCCTCAATCCGATCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAA
* * * * * *
15333017 ACGAACGTGCGGTCGGGCGGGCACTACGTCAGCC--AGA-----GA---G---G-CG-GGATCAA
258 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGA
**
15333067 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTCTGGCT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCT
* *
15333132 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCCTGGCAAGACGACTCGTTTTC
388 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** *
15333197 TATTTTTCATGATTTTCAAAACTTTTTA-TGTTC-GAGATTTTTTAAAATTTTTTCAGAAGGAGT
453 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGT
** *
15333260 TTTCTCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
517 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
15333325 AAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCAATTC-GTACACTTT
582 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTT
* * * *
15333389 AATGGCTACTGGTAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGG
646 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
15333454 TTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
711 TTTGATGAGGGATAGGG-GGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** *
15333519 ACACCCCCCCCGGCCCCCCCGATCGTCGGAACCTTAATG-CTGCCAGTCAGATTCTCCGACGATG
775 ACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTC-GCCAGTCAGGTTCTCCGACGATG
* ** * * *
15333583 GCGTCCCGACGAAGAAAAATGTGGAACCAGCACATGCCCAAGCCTAGCATG
838 GTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ***
15333634 TGCTGCCGCAACCCTTGGTCCAGTCTAATCATAGACTGGGAATGAACTTTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * * * *
15333699 GAATGAACTCCGTATGCCTAAGTCAACCAATGGAACTAGCGTGAGGGCGCTCAGTCGGCCAGAAG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * *
15333764 GGC-ATGATGCGCAAGGCAGGGATC-GCTCGGGTCCCCCTCTGCGTGCTGCCCATCCTGCTGCCG
130 GGCGA-GATGCGCAAGCCGGGGATCGGC-CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCG
15333827 CAACCCTCAATCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGA
193 CAACCCTCAATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGA
* * *
15333891 AACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCACAAGCCGTGGATCA
257 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCG
* *
15333956 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACCTTGCCAATGCCATTTCTT-TGG
322 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT-TTCTGG
* *
15334020 CTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTT
386 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
15334085 TCTATTTTTCACGATTTTTGAAACTTTTAACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAT
451 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAG
*
15334150 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
516 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * *
15334215 TAAAAA-TCGAAGTGTGCAAGATTTTGTGGCCATTTG-AAAAAGTGTCCCCATTTCAAACACTTT
581 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
15334278 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTGACTTCTCGAGG
646 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
15334342 TTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
711 TTTGATGAGGGATAGGGGGC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
15334407 ACACCCCATCCCGGCCCCCCCGATCGTCGGAACCCCAATTTCGCCAGTCAGGTTCTCCGGCGATG
775 ACACCCC--CCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATG
* * * *
15334472 GTGTCCCGACAAAGAAAAATACGACACCAGCACATACCTGAGCCCAGCATG
838 GTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
15334523 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * *
15334588 GAATGAACTCTGTATGCCTAAGTGAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
15334653 GGCGGGTTACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGGCC-ATCCTACTGCCAC
130 GGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCCAATCCTGCTGCCGC
* *
15334717 AACCCTCAATCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACAGACGAAA
194 AACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAA
* * * *
15334782 CGAGCGAGCGAGCGGGCGGGCACTACGTCGACCAGAGAGGTGGGATGCGCAAGCCGTGGATCGAT
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGAT
*
15334847 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTT
* * * *
15334912 GTAAATTCATACAATGGTCCCTGAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCGTTTTTT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
15334977 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCA-AAAGAGTTT
454 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
* * * * *
15335041 TGGCCACAAACTTGGTAGACGTGATTCTTATAATTTTTTTGGCATGCACAAAAACATTCAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
15335106 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15335171 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
15335236 GATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCAATCGCATATCATGTGCGCACAC
714 GATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * * *
15335301 CCCCCTCGGCCCCCCTTGATCCCCAGAACCCCATTGTCGCCAGTCAGGTTCTCCGACGATAGTGT
779 CCCCC-CGGCCCCCC-CGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGTGT
* * *
15335366 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCACG
842 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** * * *
15335413 TGCTGCCACAACCCTCGGCCCTGTCCAACCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* *
15335478 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
15335543 GGCGAGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCTGCCAATCCTGCTACCGTA
130 GGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
* * * * *
15335608 ACTCTCAATCCGGTCTGATCCTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGAAAC
195 ACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC
* * *
15335673 GAGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATA
* * *
15335738 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTAGCCTA
325 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTG
* ** *
15335803 TAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAACTCGTTTTGTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** ** * *
15335868 TTTTTCAAGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTGTTCACAAAGG-GTTT
455 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCA-GAAGGAGTTT
* * *
15335932 TGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAATTTAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
15335997 AAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * *
15336062 GGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGTTTT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
15336127 GATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCAACCATCGCACATCATGTGCACACA
714 GATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * ** **
15336192 -CCCCCCGGCCCCCCCAATCGCCAGAACCCCAATGTCGCTGGTCAGGTTCTCCGGGGATGGTGTC
778 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGTGTC
* * * *
15336256 TCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTAAG
843 -CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
15336302 TGCTACCGCAACCATCGGTCCG---G-TC-----C-------G-A-T-C-----CTT-GATTGGG
1 TGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * *
15336342 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCTAGAGGG
66 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * *
15336407 GCGGGATGCGTAATCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGTAA
131 GCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAA
* * * *
15336472 CCCTCAACCCCAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
196 CCCTCAATCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC
*** * * * *
15336536 GAGCGGGCCAACGGGCGAGAACTATGCCGGCTAGAGAGGT-GGATGCGCAAGCCGTGGATCGATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATA
* * * *
15336600 AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCTATTTCTCTGGCTTG
325 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTG
* *
15336665 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTTGTTTTCTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * ** *
15336730 TATTTCAAGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTTT
455 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
*
15336795 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAA
520 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* *
15336860 AACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATG
585 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
15336925 GCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
650 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
15336990 ATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACAC
715 ATGAGGGATA-GGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * * *
15337055 CCCCCC-AACCCCTCGATCGTCGGAACCTCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCC
779 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGTGTCC
** * *
15337119 CGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
844 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
15337164 TGCTGTCGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTC-CGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * * * *
15337229 GAATGAACTCCGTATGACTAAGTCAACTCACGAAACGAGCATGGGGGCGCTCAGTCGGCCAAAAG
65 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** ** * * * * **
15337294 GGTGAGATGCGTAAGCTAGGGATCGGCCGGGTCTGCCTCTACGTGCTGTCGATCCTGCTACCATA
130 GGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
** * * * * * * *
15337359 ACCCTCGGT-CTAGTCCGATCTTAGACTAGGAATGAACTACGTATACCTAAACCTATC-GACG-A
195 ACCCTCAATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACAGACGAA
* * * *
15337421 A--A-CGGACGGGCGGGCGGGCACTACGCCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCGA
258 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGA
* * *
15337483 TAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAACATGCCAATGCCATTTTTCTAGCT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCT
* *
15337548 TGTAAATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTC
388 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
15337613 TATTTTTCATGATTTTTGAAACTTTTTACGGTTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGT
453 TATTTTTCATGATTTTTGAAACTTTTTACGG-TTCAGGATTTTTTAAAATTTTTTCAGAAGGAGT
15337677 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
517 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
15337738 TCCGTATGCC
Statistics
Matches: 4345, Mismatches: 512, Indels: 216
0.86 0.10 0.04
Matches are distributed among these distances:
847 1 0.00
848 1 0.00
849 1 0.00
850 2 0.00
851 1 0.00
854 2 0.00
856 3 0.00
857 218 0.05
859 4 0.00
860 1 0.00
861 26 0.01
862 531 0.12
863 215 0.05
864 209 0.05
865 63 0.01
866 129 0.03
867 2 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 2 0.00
874 2 0.00
875 333 0.08
876 2 0.00
877 3 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 3 0.00
884 28 0.01
885 256 0.06
886 3 0.00
887 13 0.00
888 309 0.07
889 748 0.17
890 841 0.19
891 340 0.08
892 46 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
TGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAA
CCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACG
AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGTGTCCCG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:15337229 original size:26 final size:26
Alignment explanation
Indices: 15337193--15337244 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15337183 CTGGTCCGAT
15337193 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15337219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15337245 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15338182 original size:505 final size:500
Alignment explanation
Indices: 15337236--15338241 Score: 1451
Period size: 505 Copynumber: 2.0 Consensus size: 500
15337226 TGGGAATGAA
* ** * * *
15337236 CTCCGTATGACTAAGTCAACTCACGAAACGAGCATGGGGGCGCTCAGTCGGCCAAAAGGGTGAGA
1 CTCCGTATGACTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCAGCCAAAAGGGAGAGA
* * ** * * * *
15337301 TGCGTAAGCTAGGGATCGGCCGGGTCTGCCTCTACGTGCTGTCGATCCTGCTACCATAACCCTCG
66 TGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCA
* *
15337366 GTCTAGTCCGATCTTAGACTAGGAATGAACTACGTATACCTAAACCTATCGACGAAACGGACGGG
131 GTCTAGTCCGATCTTAGACTAGGAATGAACTACATATACCTAAACCAATCGACGAAACGGACGGG
*
15337431 CGGGCGGGCACTACGCCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
196 CGGGCGGGCACTACGCCGGCCAGAAAGGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
* *
15337496 GGGTTTAGGCACATCTTTATATTTCTAACATGCCAATGCCATTTTTCTAGCTTGTAAATTCTTAC
261 GGGTTTAGGCACATCTTCATATTTCTAACATGCCAATGCCATTTTTCTAGCTTGTAAATTCATAC
* *
15337561 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGAT
326 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATCTTTCACGAT
15337626 TTTTGAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
391 TTTTGAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
15337691 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
456 TGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATT
* * * * *
15337737 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGAGGGA
1 CTCCGTATGACTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCAGCCAAAAGGGAGAGA
* * * * *
15337802 TGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
66 TGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCA
* ** * * * * * *
15337867 TTCTAGTTTGATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGAAACGGGCAGG
131 GTCTAGTCCGATCTTAGACTAGGAATGAACTACATATACCTAAACCAATCGACGAAAC-GG-A--
* * * * *
15337932 CGGGCGGGCGGGCACTATGCCGGTCAGAGAGG-GGTGGTGCACAAGCCGTGGATCGATAGGGTGG
192 CGGGCGGGCGGGCACTACGCCGGCCAGAAAGGCGG-GATGCACAAGCCATGGATCGATAGGGTGG
** * *
15337996 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTCTTGGTTTGTAAAT
256 TAGGTGGGTTTAGGCACATCTTCATATTTCTAACATGCCAATGCCATTTTTC-TAGCTTGTAAAT
*
15338060 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTT
320 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATCTTT
*
15338125 CACGATTTTTGAAACTTTTTACGG-TTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCC
385 CACGATTTTTGAAACTTTTTACGGTTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
15338189 CCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATT
449 CCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATT
15338241 C
1 C
15338242 AATGAAAAAC
Statistics
Matches: 446, Mismatches: 52, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
501 153 0.34
502 2 0.00
503 1 0.00
504 35 0.08
505 255 0.57
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (500 bp):
CTCCGTATGACTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCAGCCAAAAGGGAGAGA
TGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCA
GTCTAGTCCGATCTTAGACTAGGAATGAACTACATATACCTAAACCAATCGACGAAACGGACGGG
CGGGCGGGCACTACGCCGGCCAGAAAGGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTAACATGCCAATGCCATTTTTCTAGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATCTTTCACGAT
TTTTGAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATT
Found at i:15338618 original size:26 final size:26
Alignment explanation
Indices: 15338582--15338660 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
15338572 CCAGTCTGAT
*
15338582 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15338608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15338634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15338660 C
1 C
15338661 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15340399 original size:26 final size:26
Alignment explanation
Indices: 15340363--15340414 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15340353 CTAGTCCGAT
15340363 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15340389 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15340415 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15340824 original size:884 final size:882
Alignment explanation
Indices: 15337737--15340904 Score: 4005
Period size: 864 Copynumber: 3.6 Consensus size: 882
15337727 CAAAAAAATT
* *
15337737 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGAGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
* *
15337802 TGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
66 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
* * ** * * * *
15337867 -TTCTAGTTTGATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGAAACGGGCAG
131 GTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGG-A-
* ** * *
15337931 GCGGGCGGGCGGGCACTATGCCGGTCAGAGAGGGGTGGTGCACAAGCCGTGGATCGATAGGGTGG
193 GCGGGCGGGCGGGCACTACGCCGACCAGAGAGGGG-GATGCGCAAGCCGTGGATCGATAGGGTGG
* *
15337996 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTCTTGGTTTGTAAAT
257 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC-TAGCTTGTAAAT
*
15338060 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTT
321 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * *
15338125 CACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC
386 CAAGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCC
*
15338190 CAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCA-ATGAAAAACT
451 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACT
* * * **
15338253 CAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGTTTA
515 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
15338318 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
580 CTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
15338383 GGGAGAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCT
644 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-
* * * * *
15338448 CGCTCCCCCCCG-TCGCCGGAACCCCAATGCCGTCGTTCAGGTTCTCCGACAATGGTGTCCCGAA
708 CCCCCCCCCCCGATCGCCGGAACCCCAATGCCGCCG-TCAGGTTCTCCGACGATGGTGTCCCGGA
* * *
15338512 GATGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGATCCAGT
772 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAA-CC-C--T-C-G-
15338577 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
829 --G-TC-T--A----G--T---C--CG-AT-CTTAGACTGGGAATGAACTCC-TATGCTTAGACT
15338642 GGGAATGAA
874 GGGAATGAA
*
15338651 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
* * * * * * * *
15338716 TGTGCAAGCTGGGGATCTGTC-GGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCG
66 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
*
15338780 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCAGA
131 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGG-AG-
* * * *
15338845 CGGGTGGGAGGGAGGGCAATACGCCGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
194 C----GGGCGGGCGGGCACTACGCCGACCAGAGAGG-GGGATGCGCAAGCCGTGGATCGATAGGG
* * *
15338910 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTAGCCTATAA
254 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAA
**
15338975 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTT
319 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * *
15339040 TTCAAGATTTGCAAAACTTTTTACGGTTTGGGATTTTTTAAACTTTGTTCACAAAGAGTTTTGGC
384 TTCAAGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGC
* *
15339105 CCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAC
449 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
15339170 TCGAAGTGAACAAGATTTTGTGATCTTTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCT
514 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
15339235 ACTGGCAGCAAACTTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAATTCTCGAGTTTTGATG
579 ACTGGCAGCAAACCTGTAAAATCTCAAATG-CTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
15339300 AGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCAACCATCGCACATCATGTGCACACACCCC
643 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
15339365 CCGGCCCCCCCCCGATCGCCAGAACCCCAATGTCGCTGGTCAGGTTCTCCGAGGATGGTGTCTCG
708 CC--CCCCCCCCCGATCGCCGGAACCCCAATGCCGC-CGTCAGGTTCTCCGACGATGGTGTCCCG
* * *
15339430 GAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGCAACCATC-G----
770 GAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCGCAACCCTCGGTCTA
*
15339490 GTCCGATC-----C-------G-A-T-C--T--TT-GATTGGGAATGAA
834 GTCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAA
* * *
15339519 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGCTAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
* * * * * * *
15339584 TGCACAATCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGTAACCCTCA
66 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
** * * *
15339649 ACCCCATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GAGCG
131 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGAGCG
** * * * * *
15339712 GGCCAACGGATGAGAACTACGCCCACTAGAGAGGTGGATGCGCAAGCCGTGGATCGATAGGGTGG
196 GG----CGGGCGGGCACTACGCCGACCAGAGAGGGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
15339777 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
257 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATT
* * *
15339842 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTTGTTTTCTATATTTC
322 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
15339907 AAGATTTTCAAAACTTTTTACGGCTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCCC
387 AAGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCCC
* *
15339972 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCG
452 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
15340037 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACC
517 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
15340102 AGCAGCAAACCTGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
582 GGCAGCAAACCTGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15340167 ATATGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCG
647 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCC
* * ** * *
15340232 ACCCCTCGATCGTTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTATCCCGGTGAAG
712 CCCCCCCGATCGCCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGACGATGGTGTCCCGGAGAAG
*
15340297 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTAGTCCGA
776 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCTAGTCCGA
15340362 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
840 TCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAA
* * * * * * * * * *
15340406 CTCCGTATGACTAAGTCAACTCACGAAACGAGCATGGGGGCGCTCAGTCGGCCAAAAGGGTGAGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
* * * ** * * * * *
15340471 TGCGTAAGCTGAGGATCGGCCGGGTCTGCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCG
66 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
* * * * * * * *
15340536 GTCTGGTCCGATCTTAGACTAGGAATGAACTACGTATACCTAAACCTATCGACGAAAC-GGA-CG
131 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGAGCG
*
15340599 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
196 GGCGGGCGGGCACTACGCCGACCAGAGAGG-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
15340664 GTGGGTTCAGGCACATCTTTATATTTCTAG-CATGCCAATGCCATTTTTCTAGCTTGTAAATTCT
260 GTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCA
**
15340728 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGT
324 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAA
** * *
15340793 GATTTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
389 GATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCCCAA
* *
15340858 ATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
454 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
15340905 CTCTCCGTAT
Statistics
Matches: 1970, Mismatches: 232, Indels: 134
0.84 0.10 0.06
Matches are distributed among these distances:
861 105 0.05
862 1 0.00
863 93 0.05
864 355 0.18
865 20 0.01
866 10 0.01
867 1 0.00
868 90 0.05
869 91 0.05
871 2 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
883 21 0.01
884 258 0.13
885 1 0.00
886 2 0.00
887 163 0.08
888 2 0.00
889 1 0.00
890 2 0.00
891 2 0.00
893 1 0.00
896 1 0.00
898 1 0.00
910 1 0.00
912 1 0.00
913 92 0.05
914 84 0.04
915 1 0.00
916 1 0.00
917 246 0.12
918 211 0.11
919 13 0.01
920 87 0.04
921 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCA
GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGAGCG
GGCGGGCGGGCACTACGCCGACCAGAGAGGGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGA
TTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCC
CCCGATCGCCGGAACCCCAATGCCGCCGTCAGGTTCTCCGACGATGGTGTCCCGGAGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCTAGTCCGATCTTAG
ACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAA
Found at i:15341809 original size:26 final size:26
Alignment explanation
Indices: 15341773--15341851 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
15341763 CCAGTCTGAT
*
15341773 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15341799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15341825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15341851 C
1 C
15341852 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15342724 original size:26 final size:26
Alignment explanation
Indices: 15342695--15342747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15342685 CTGATCCGAT
* *
15342695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15342721 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15342747 C
1 C
15342748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15343612 original size:25 final size:26
Alignment explanation
Indices: 15343566--15343617 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
15343556 CCGATCTGAT
15343566 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15343592 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15343617 C
1 C
15343618 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15346242 original size:26 final size:26
Alignment explanation
Indices: 15346213--15346265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15346203 TCGGTCCGAT
*
15346213 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15346239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15346265 C
1 C
15346266 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15346570 original size:888 final size:888
Alignment explanation
Indices: 15340907--15350903 Score: 12174
Period size: 888 Copynumber: 11.3 Consensus size: 888
15340897 CAAAAAAACT
*
15340907 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
15340972 TGTGCAAGCCGGGGATCGTTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCGCAACCCTCA
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * * * ** *
15341037 TTCTAGTT-TGATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGACACGGGCAG
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * *
15341101 GCGGGCGGGCGGGCACTATGCCGGTCAGAGAGGCGTTGG-TGCACAAGCCGTGGATCGATAGCGG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG--GGATGCGCAAGCCGTGGATCGATAG-GG
*
15341165 TGGTCAGGTGAGTTTAGGCACATCTTCCATAGTTTCTGCCATGCCCCAATGCCATTTTTTTTGCG
258 TGGT-AGGTGGGTTTAGGCACATCTT-CATA-TTTCTGCCATG--CCAATGCCA-TTTTTTTG-G
15341230 CTTGTAAATTCAGGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGACGACTCG
316 CTTGTAAATTCA--TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA-GACGACTCG
* * *
15341295 TTTTCTATCTTTCACGATTTTTGAAAC--TTTACGGTTCGGGATTTTTAAAGATTTTTTCAGAAG
378 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA-ATTTTTTCAGAAG
* ** * *
15341358 GCGTTTTGGCCCCCAAACTTGGGTATTCGGTGGTCCTTTGTATTTTTGGTTGGCCATGCACCAAA
442 GAGTTTTGG-CCCCAAACTT-GGTAGAC-GTGATCC-TTGTATTTTT-GTTGG-CATGCACAAAA
** * * *
15341423 AAATTCAATGAAAAAAACCTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTAT
501 AAATTC-A-GCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
** *
15341488 TTCAGACACTTTAATGTTTACTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGT
563 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
15341553 GAGTTCTCAAGGTTTGATAAGGGAGAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATTGCA
628 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
15341618 CATCATTTGCGCACACCCCCTCGCTCCCCCCCG-TCGTCGGAACCCCAATGCCGTCGTTTAGGTT
693 CATCATGTGCGCACACCCCC-CG-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * *
15341682 CTCCGAAAATGGTGTCCCGAAGATGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
756 CTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
15341747 TACTGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAA
821 TGCCGCAA-CC-C--T-C-G---G----T---C---G---G---TCC-GAT-CTTAGACTGGGAA
15341812 TGAACTCCGTATGCTTAGACTGGGAATGAA
859 TGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
15341842 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGTGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * *
15341907 TGTGCAAGCTGGGGGGGATCTG-TC-GGTACCCCTCTGCGTGCTGCCAATCCTGCTACCGCCACC
66 TGCGCAAGC---CGGGGATC-GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACC
* * *
15341970 CTCGGTC-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGG
127 CTCGGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA---
* * * * * *
15342034 GCGGACGGGTGGGAGGGAGGGCAATACGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGA
189 -CGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
15342099 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGA-GCCAATGCCATTTTTCTGGC
253 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC-ATGCCAATGCCATTTTTTTGGC
* * *
15342163 TTGTAAATTCATACAATGCTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTT
317 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * ** * *
15342228 CTATTTTTCACGATCTTTGAAACTTTTTAAGGTTCAAAAATTTTTTAAAATTTTTCCAGAACGAG
382 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTT-AAATTTTTTCAGAAGGAG
* *
15342293 TTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAAC
445 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
15342358 TAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTT
510 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
** ** * *
15342423 AATATCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGATCTCAAGG
575 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
15342488 TTTGATGAGGGATAGGGGCCCAATATAAGGGCCATGTATCAGCACCCATCGCACATCATGTACGC
640 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
15342553 ACACCCCCCGGTCCCCCCC-ATCGCCGAAACTCCAATGCCGCCGGTCAAGTTCTCCGGCGATGGT
705 ACACCCCCCGG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGT
* ** * * *
15342617 GTCCTGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAAACCTC
769 GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
15342682 GATCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAGTGAA
834 GGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
15342738 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGTGGGGCGAGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
15342803 TGTGCAAGCTGAGGATCGATCGGGT---CC-C--C---CT----A-----CTGCCACAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * * * * *
15342850 GT-TCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCGAAGCCAACCAATGAAACGAGCGA
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * * * * *
15342914 GCGGGCGGGCGGGCACTACGTCGACCAAAGGGGTGGGATGCACAAGCCGTGGATCGATAGGGTGG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15342979 TAGGTGGGTTTAGGCACATCATCATATTTCTGCCGTGCCAATGCCATTTTTTTGGCGTCTAAATT
261 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
*
15343044 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
15343109 ATGATTTTTGAAACTTTTTACGGTT-TGGTATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCC
391 ACGATTTTTGAAACTTTTTACGGTTCAGG-ATTTTT-TAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
15343173 CAAACTTAGTAGACGTGATCCTTGTATTTTTGTGGGCATGCCCAAAAAAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
15343238 GAAGTGTACAATATTTTGTGACAAGTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * * *
15343303 TAGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGAGGTGTGACTTCTCGAGATTTGGTGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
15343368 GTATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGTACATCATTTGCGTACACCCCCC
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
15343433 GGCCCCCCTGATCGTCGGAGCCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGGTGTCCCGACGA
714 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * *
15343498 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCT
779 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCC
*
15343563 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG-ATGAA
843 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
15343608 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCTGGCCAGAGGGG-GGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * *
15343672 TGTGCAAGCCGGGGATCGACCGGGTCCTCGTCTATGTGCTGCAGATCCTGTTGCCACAACCCTCA
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * *
15343737 ATC-CGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA-C----AAACGAA---
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * * *
15343793 ACGAGCGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
15343858 TAGGT-GGTTTAGGCACATCTTCATATTTCTGCCATTCCAATGCCATTTTTTTGGCTTGTAAATT
261 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
* *
15343922 CATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
15343987 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
391 ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCC
** * *
15344052 AAACTCAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAG-TGAAAAACTC
455 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTC
*
15344116 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
15344181 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * *
15344246 GGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACTTGATGTGCGCACACCCCCT
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
15344311 GGCCCCCCCGATTGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACAATGGTATCCCGACGA
714 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * * * *
15344376 AGAAAAATACGGCACCAACCCATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCT
779 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCC
* * *
15344441 GATCTGACACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAA
843 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
15344487 CTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTAGCCGGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * ** *
15344552 TGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACAAGCTGCTGATCCTACTGCCGTAACCCTCA
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * *
15344617 GT-TCGGTTC-GATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCGACCGACGAAACG-A--
131 GTCT-GGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACG
* * *
15344677 -----GCGGGCGGGCACTATGCAGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
195 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
15344737 G-AGGTGGGTTTAGGCACACCTTCATATTTCTGCCATGCCAATACCATTTTTCTAGCTTGTAAAT
260 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAAT
* *
15344801 TCATACAATGGTCCTTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * **
15344866 CACGATTTACGAAACATTTTAAGGTTC-GAGATTGTTAAAAATTTTTTCAGAAGGAGTTTTGGCC
390 CACGATTTTTGAAACTTTTTACGGTTCAG-GATT-TTTTAAATTTTTTCAGAAGGAGTTTTGGCC
* * *
15344930 CCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
453 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
15344995 CGAAGCGTGCAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
15345060 CTAGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * * *
15345124 GGGATAAGGGGCCGATATAAGGGCCAAGTACTAGCACCCATCACACATCGTGTGCGTACACCCCC
648 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * ** * * *
15345189 CCTGGCACCCCCGTTCACCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGG
712 CC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGA
* * * *
15345254 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGGTCCGG
776 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGG
* *
15345319 TCTGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
840 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
15345368 CTCCGTATGCCTAAGTCAACTCAAGAAATGAGCGTGCGGGCGCTCAACCGGCC-GAAGGGGTGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGG
* * * ** *
15345432 AT-CTGCAAGTCGGGGATCGGTCGGGTCCTCCTCTATATGCTGCCGATCCTGCTACCACAACCCT
65 ATGC-GCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCT
* * * * * *
15345496 TGGTCTAG-TCTGATCTTAAACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACT-AAACGAG
129 CGGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TGAAACGAA
*** * * * *
15345559 CGGGCAAACGGGCGGGCACTACGCCGACAAGAGAGGTGGGATGCGCAAACCGTGGATCGATAGGG
193 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
*
15345624 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCCATGCCAATGCCATTTTTTTGGCTTGTAA
258 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAA
15345689 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
323 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
15345754 TTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGTAAATTTTTTCAGATGGAGTTTTGGC
388 TTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT-TAAATTTTTTCAGAAGGAGTTTTGGC
* * *
15345819 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAACTCAGCTAAAAAC
452 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
15345884 TCGAAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
517 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* **
15345949 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATG
582 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
15346014 AGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACACCCC
647 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * * * *
15346079 CCGACCCCCCCAATCGCCAGAACCTCAATGCCGTCGGTCACGTTCTCCGATGATGGTGTCTCGAT
712 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGAC
* * * * * *
15346144 GAAGAAAAATGCGGCACCAGCACATACCCGAGCCCGGCATGTGCTCCCGTATCCTTCGGTCGGTC
777 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTC
*
15346209 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
842 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
15346256 CTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGTGGGGCGAGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * *
15346321 TGCGGAAGTCGAGGATCGATCGGGTCCCCTTCTGCATGCTGCCGATCGTACTGCCACAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * *
15346386 GTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCGATAAAATGAACGG
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * * * *
15346450 GTGGGCGGGCGGGCACTATGCCGGCCAGAAAGGCGGGTTACGCAAGCCGTGGATCGATAGGGTGG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
15346515 TAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
261 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
* * *
15346580 CATACAATGGTCCCTTAAGCATTCATGTGATGTTTCATCGCAAGACGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
15346645 ACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCC
391 ACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCC
* *
15346709 CAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
15346774 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
15346839 TGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAC
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15346904 GGATAGGGGTCTAATAGAAGGGCCAAGTACCAGCACCCATC-CTACATCATGTGCGCACACTCCC
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACAC-CCC
* * * **
15346968 CCGGCCCCCCCTTGATCATCGGAACCCCAATGCCACTGGTCAGGTTCTCCGACGATGGTGTCTTG
712 CCGGCCCCCCC--GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCG
* * * * *
15347033 ACGAAAAAAAATACGGCACCAGCACATCCCCGAGCCCAGCATGTGCTACCCCAACCCTCGGTCCG
775 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CG
*
15347098 GTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAA
839 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * ** *
15347148 CTCTGTGTGCCTGAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAATCGACCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
15347213 TGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGTTGTCGATCTTGCTGCTGA-AACCCTC
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC-CACAACCCTC
* * **
15347277 GGTCT-GATCCGATCTTCCACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG-A--
130 GGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACG
* * * * * *
15347338 -GCGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTG
195 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
15347402 GTAGGTGGGTTTAGGCACATCTACATATTTCTGCGATGCCAATGCCATTTTTCTGGCTTGTAAAT
260 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAAT
*
15347467 TCATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** *
15347532 CACGATTTTCAAAACTTTTTATGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC
390 CACGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
15347597 CAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGCTTGCAAAACTAAAAATTCAGCTAAAAAC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA--AAAAATTCAGCTAAAAAC
* * *
15347662 TGGAAGCGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
517 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
15347727 ACTGGCGGCAAACCTGTAAAATCTCAAATGCTTTTTAAGCGGGGTG-G-GTTCTCGAGGTTTGAT
582 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
15347790 GAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATTGCACATCATGTGCGTACACCC
646 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
15347855 CCTGGCCCCCCCGGATCGTTGGAACCCCAATG--TCC--TC-GG---T----C-A-GGT-TCTCC
711 CCCGGCCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTC-CC
* * **
15347905 GACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACGATCGGTCT
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-
* * *
15347970 GATCCGATTTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
838 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
15348021 CTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCTGGTCAGAGGGGTGAGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
15348086 TGCACAAGCTGGGAATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * ** *
15348151 GTC-CGATCTGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACG-A---
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * * *
15348211 ----GCAGACGGGCACTACGCCGGCCAAAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
15348272 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCA----TTT--C-TCT--A-G
261 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
*
15348327 C-T----T-G-----TAA--ATTCA--T--A----CA-GGCAAGACGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
15348370 ATGATTTTCGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCC
391 ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCC
** * *
15348435 ACTCTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAAACTCG
455 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
15348500 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCTCATTTTAAACACTTTAATGGCTACT
520 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
15348565 GGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGG
585 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
15348630 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCG
650 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * *
15348695 G-CCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGGTGACCCGATGAA
715 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
15348759 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G---G-
780 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGA
15348815 ---T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAA
845 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * ** * *
15348843 CTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCATTCAGCCAGCCAGAGGGGTGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
15348908 TACGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTCCCGATCCTGCTGCCTCAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * * *
15348973 GTC-CGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTCAGCCAACCGATGAAACGAGCGG
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
* * *
15349037 GCGGGGGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTCG
196 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15349102 TAGGTGGGTTAAGGCACATCTTCATATTTCTGCCGTGCCATTGACATTTTTTTGGCTTGTAAATT
261 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
*
15349167 CATACAATGGTCCCTTAAGCCTTCCTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
15349232 ATGATTTTTGAAACTTTTTAC-GTT-ATGGGATTTTTTAAACTTTTTTCAGAGGGAGGTTTGGCC
391 ACGATTTTTGAAACTTTTTACGGTTCA--GGATTTTTTAAA-TTTTTTCAGAAGGAGTTTTGGCC
* *
15349295 CCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
453 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
15349360 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCAATTTCAGACACTTTAATGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15349425 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
15349490 GGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACA-----
648 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** ** *
15349550 C--CCCCCCCGATCGTCGAAACCCCAATGCTACCGGTCAGGTTCTCCGGTGACGGTGTCCCGACG
713 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACG
* * * * * * * *
15349613 AAAAAAAATACGGAACCAGCTCATGCCAGACCCCAGCATGTGCTGCCGTAA--CAC--TC-G---
778 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCC
*
15349670 G-TC-----C-----A-G---TCCG-AT-CTTTGACTGGGAATGAA
843 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * * *
15349699 CTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGCCGACGCTCAGCCAGCCATAGGGGCAGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
15349764 TGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* ** * *
15349829 ATCCAG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGTCGAAATG-AGCG
131 GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC---CG--ATGAAACG
* * * * *
15349892 GACGGGGGGGGGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCCTTTGGATCGAT
191 AACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CC-GTGGATCGAT
* * * * *
15349957 CGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTGGCTT
254 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTT
* *
15350022 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGATTCATGGCAAGACGACTCATTTTCT
319 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
15350087 ATTTTTCATAATTTTTGAAACTTTTTTACGGTTTCA-AATTTTTAAAAATTTTTTCAGTAGGATT
384 ATTTTTCACGATTTTTGAAAC-TTTTTACGG-TTCAGGATTTTT-TAAATTTTTTCAGAAGGAGT
*
15350151 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCT
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
15350216 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
511 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
15350281 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGT
576 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
15350346 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCA
641 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
15350411 CACCCCCTCCAGGCCCCCCCGATCGTCGGAACCCCAATACCGCCCGTCAGGTTCTCC-AGCGATG
706 CA-CCCC-CC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATG
* * * *
15350475 GTGTCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGTAACCC
767 GTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
15350540 TCGGTCTGGTTCGGTCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAACGAA
832 TCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * *
15350598 CTCTATATTCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
15350663 TGCACAAGTCGGGGATCGATTGGGTCCCCATCTGCGTGTTGCCGATCCTGCTGCCACAACCCTCG
66 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * *
15350728 AT-TCGG-TCTGATCTTAGACCGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
131 GTCT-GGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACG
* * * * * *
15350791 GGCTGACGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATG
195 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
15350856 GTAGCTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
260 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
15350904 GGCAATGGTG
Statistics
Matches: 7900, Mismatches: 940, Indels: 486
0.85 0.10 0.05
Matches are distributed among these distances:
822 181 0.02
823 2 0.00
824 3 0.00
825 1 0.00
826 2 0.00
830 97 0.01
832 1 0.00
834 23 0.00
835 120 0.02
836 89 0.01
837 121 0.02
838 4 0.00
839 4 0.00
840 1 0.00
841 1 0.00
842 2 0.00
844 2 0.00
845 1 0.00
846 6 0.00
847 1 0.00
848 60 0.01
849 1 0.00
851 3 0.00
853 4 0.00
854 1 0.00
855 2 0.00
856 275 0.03
857 5 0.00
858 1 0.00
859 3 0.00
860 50 0.01
861 13 0.00
862 463 0.06
863 277 0.04
864 4 0.00
865 4 0.00
866 1 0.00
869 119 0.02
870 65 0.01
871 405 0.05
872 206 0.03
873 356 0.05
874 1 0.00
875 3 0.00
876 63 0.01
877 4 0.00
878 559 0.07
879 228 0.03
880 455 0.06
881 311 0.04
882 12 0.00
883 4 0.00
884 1 0.00
885 8 0.00
886 1 0.00
887 75 0.01
888 964 0.12
889 253 0.03
890 429 0.05
891 201 0.03
892 208 0.03
893 66 0.01
894 8 0.00
895 44 0.01
896 111 0.01
897 5 0.00
898 5 0.00
899 166 0.02
904 1 0.00
906 1 0.00
909 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
920 1 0.00
921 1 0.00
922 96 0.01
923 177 0.02
924 5 0.00
925 1 0.00
926 16 0.00
927 5 0.00
928 10 0.00
929 39 0.00
930 44 0.01
931 19 0.00
932 38 0.00
933 9 0.00
934 9 0.00
935 70 0.01
936 10 0.00
937 87 0.01
938 29 0.00
939 9 0.00
940 21 0.00
941 33 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG
GTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGG
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
Found at i:15348015 original size:26 final size:26
Alignment explanation
Indices: 15347979--15348030 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347969 TGATCCGATT
15347979 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
15348005 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
15348031 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15349473 original size:862 final size:863
Alignment explanation
Indices: 15348343--15350903 Score: 3347
Period size: 862 Copynumber: 2.9 Consensus size: 863
15348333 AATTCATACA
* * * *
15348343 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTCGGGATTTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* ** *
15348408 AATTTTTTCAGAAGGATTTTTGGCCCCACTCTTGGTAGACGTGATCCTTGTATTTTTGTTAGCAT
66 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
15348473 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTC
131 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * *
15348538 CTCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGTG
196 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
15348603 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
261 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
15348668 TCGCACATCATTTGCGCACACCCCCCGG-CCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAG
326 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * *
15348732 GTTCTCCGATGATGGTGACCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
391 GTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
15348797 TGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
456 TGCTGCCGCAACCCTCGGTCTGACTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* ** * * *
15348861 ACCCACGAAACAAGCGTGCGGGCATTCAGCCAGCCAGAGGGGTGGGATACGCAAGTCGGGGATCG
521 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
* * * *
15348926 GTCGGGTCCCCCTCTACGTGCTCCCGATCCTGCTGCCTCAACCCTCGGTCCGATCCGATCTTAGA
586 ATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGA
* *
15348991 CTGGGAATGAACTCCATATGCCTCAGCCAACCGATGAAACGAGCGGGCGGGGGGGCGGGCACTAC
651 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGGGGGCGGGCACTAC
* * *
15349056 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTTAAGGCACAT
715 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
15349121 CTTCATATTTCTGCCGTGCCATTGACATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
780 CTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
15349186 CCTTCCTGTGAAGTTTCAT
845 CCTTCATGTGAAGTTTCAT
* * *
15349205 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GTTATGGGATTTTTTA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-CGAGATTTTTTA
* * * *
15349269 AACTTTTTTCAGAGGGAGGTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCA
65 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
15349334 TGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
130 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
15349399 CTCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA
195 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15349464 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCA
260 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* **
15349529 ATCGCACATCATGTGCGCACA-----C--CCCCCCCGATCGTCGAAACCCCAATGCTACCGGTCA
325 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
** * * * * * *
15349587 GGTTCTCCGGTGACGGTGTCCCGACGAAAAAAAATACGGAACCAGCTCATGCCAGACCCCAGCAT
390 GGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * **
15349652 GTGCTGCCGTAACACTCGGTC-CAGTCCGATCTTTGACTGGGAATGAACTCCGTATGCAGAAGTC
455 GTGCTGCCGCAACCCTCGGTCTGACTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
* * * * * * *
15349716 AACCCACGAAACGAGCGTGCCGACGCTCAGCCAGCCATAGGGGCAGGATGCGTAAGCCGGGGATC
520 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* * * * *
15349781 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCC-AGTCTGATCTTA
585 GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGA-TCTGATCTTA
* * * *
15349845 GACTGGGAATGAACTCTGTATGCCTAAGCCAACTG-TCGAAATGAGCGGACGGGGGGGGGGGCGG
649 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAACGA---G-C-GGGCGGGGGGCGG
* * *
15349909 GCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCCTTTGGATCGATCGGGTGGTAGGTGGGTT
708 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CC-GTGGATCGATAGGGTGGTAGGTGGGTT
* *
15349974 TAGGCAAATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
771 TAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
*
15350039 TCCCTTAAGCCTTCATGTGAAGATTCAT
836 TCCCTTAAGCCTTCATGTGAAGTTTCAT
* ** * *
15350067 GGCAAGACGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTTACGGTTTC-AAATTTTTA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGG-TTCGAGATTTTTT
* *
15350131 AAAATTTTTTCAGTAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
64 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
15350196 ATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
129 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
15350261 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
194 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
15350326 GGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
259 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
15350391 CATCGCACATCATGTACGCACACCCCCTCCAGGCCCCCCCGATCGTCGGAACCCCAATACCGCCC
324 CATCGCACATCATGTGCGCACA-CCCC-CC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
15350456 GTCAGGTTCTCC-AGCGATGGTGTCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
386 GTCAGGTTCTCCGA-CGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * * * *
15350520 AGAATGTGCTGCCGTAACCCTCGGTCTG-GTTCGGTCTTAGATTGGGAATGAAC-TCTGTATGCT
450 AGCATGTGCTGCCGCAACCCTCGGTCTGACTCCGATCTTAGACTGGGAATGAACTTC-GTATGC-
15350583 TAGACTGGGAACGAACTCTATATTCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCCG
513 ----CT---AA-G---TC-A-A--CC-----C-A-C---GAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
15350648 GCCAGAGGGGTGGGATGCACAAGTCGGGGATCGATTGGGTCCCCATCTGCGTGTTGCCGATCCTG
553 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * * *
15350713 CTGCCACAACCCTCGATTCGGTCTGATCTTAGACCGGGAATGAACTTCGTATGCCTAAGCCAACC
618 CTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * *
15350778 GACGAAACGAGCGGGCTGACGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
683 GATGAAACGAGCGGGC-GGGGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * * *
15350843 GATCGATAGGATGGTAGCTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
747 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCAT
15350904 GGCAATGGTG
Statistics
Matches: 1473, Mismatches: 169, Indels: 83
0.85 0.10 0.05
Matches are distributed among these distances:
855 3 0.00
856 286 0.19
857 1 0.00
859 1 0.00
860 42 0.03
861 8 0.01
862 465 0.32
863 279 0.19
864 1 0.00
865 2 0.00
870 1 0.00
872 1 0.00
873 130 0.09
881 2 0.00
882 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
889 2 0.00
893 56 0.04
894 6 0.00
895 39 0.03
896 2 0.00
899 141 0.10
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (863 bp):
GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
GTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGACTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
ATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGGGGCGGGCACTACG
CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCAT
Found at i:15351027 original size:26 final size:26
Alignment explanation
Indices: 15350991--15351043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350981 CCGGTCTGAT
*
15350991 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15351017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15351043 C
1 C
15351044 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15352732 original size:26 final size:26
Alignment explanation
Indices: 15352696--15352749 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15352686 GGTCCAATCT
15352696 TAGACTGAGAATGAACTCCGTAGGCC
1 TAGACTGAGAATGAACTCCGTAGGCC
*
15352722 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTAGGCC
15352748 TA
1 TA
15352750 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTAGGCC
Found at i:15354045 original size:865 final size:860
Alignment explanation
Indices: 15351595--15355575 Score: 4600
Period size: 878 Copynumber: 4.5 Consensus size: 860
15351585 ATTTCAGACA
* * *
15351595 CTTTAAGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAACTACC
1 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
15351660 AGCACCCATTGTACATCATGTGCGCACA-CCCCCTGCCCCTCCGATCGTCGCAACCCCAATGCCG
66 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* *
15351724 TCGGTCAGGTTCTTCGACGATGGTGTCCCGGCGAAGAAAAATACGGCA-CAGCACATGCCCGAGC
131 -CGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
15351788 CCAGCATGTGCAGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
195 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
15351853 TATGTCCAACCCACGAAACGATGCTGTGCGGCCGCTCAACCGACCAAAGGGGCGGGAATGC-CGC
260 TAAGT-CAACCCACCAAACGA-GCTGTACGGGCGCTCAACCGACCAGAGGGGCGGG-ATGCAC-A
* * ** * * *
15351917 AGTTCGGGGATCGGCCGGGTCCTCCTCTGCATTTTGTCGATCCTGCTACCGCAACCTTCAGTCCG
321 AG-CCGGGGATCGACCGGGTCCTCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCG
* * * * * * * * *
15351982 GTCTGATCTTAGACTGAGAATGAAATCCGTAAGCCTAAGCCAACTGACGAAACGAGCGGGCGGGC
385 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAATC-AAC-GGCGGGT
** *** * * *
15352047 GGGCGGGCACTATACCGATTAGAGAGGCGGGATACGCAAGCCATGGATC-ATTAGGTTAGTAGGT
448 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGA-TAGGGTGGTAGGT
*
15352111 GGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
512 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* *
15352176 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGAT
577 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * *
15352241 TTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGCAGTTTTGGCCCCAAACT
642 TTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTATTGGCCCCAAACT
* * * *
15352306 TGGTACACATGATCCTTGTATTTTTGTGGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTG
707 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
15352371 TACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTGAGGCACTTTAATGGCTACTGGCAG
772 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAG
15352436 CAAACCTGTAAAATCTCAAATGCT
837 CAAACCTGTAAAATCTCAAATGCT
* * *
15352460 CTTTCAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
1 CTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
15352525 CAGCACCCATCGCACATCATGTGCGCATACCCCCCAGCCCTCCCCGATCGCCGGAACCCCAATGC
65 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCCGATCGTCGGAACCCCAATGC
* * *
15352590 CGCCGGTCAGATTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
129 CG-CGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * *
15352655 GCCCTGCATGTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTAGG
193 GCCCAGCATGTGCTGCCGCAA-CC-C--TC-GGT-C---C--AG--T----CTG-A-T-C-T---
* * * * *
15352720 CCTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGTTCAG
234 --TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCTGTACGGGCGCTCAA
** * * * * *
15352784 CCGGTCGGATGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCTCCTCTACATGCTGCTGATC
297 CCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCTCCTCTGCATGCTGCCGATC
* ** * * *
15352849 CTACTGTTGTAACCCTC-GATCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
362 CTGCTGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
15352913 AATCGACG-A--AA---C----GAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAACCA
426 AACCGACGAATCAACGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
* * * **
15352968 TGGATCGATATGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGTGATTT
491 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
15353033 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
556 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
15353098 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGA-TTTTTTAACATTCTTTCA
621 TCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAA-ATTTTTTCA
* *
15353162 GAAGGAGTATTAGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
685 GAAGGAGTATTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
15353227 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
750 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
15353292 ACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCT
815 ACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCT
*
15353338 CTTTCAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTAC
1 CTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
15353403 CTGCA-CCATCGCACATCATGTGCGTACACCCCCTGGCCCCCCCGATCGCCGGAA-CCCAATGCC
65 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * *
15353466 GCAGGTCAGGTTCTCCGACGATGGTGTCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
130 GC-GGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
15353531 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
194 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * * *
15353596 CTAAGTTAACCCACCAAATGAGC-GTACGGGCATTCAGCCGACCAGAGGGGCGAGATGCACACGT
259 CTAAGTCAACCCACCAAACGAGCTGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGC
* * * *
15353660 CGGGGATCGATCGGGTCC-CTCTTTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATC
324 CGGGGATCGACCGGGTCCTC-CTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATC
* * * * *
15353724 CGACCTTTGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAATCAAGCGGACAGGGAGG
388 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAATCAA-CGG-C---G-GG
* * *
15353789 TGGGCGGGCACGACGCCGGCCAGAGAGGCTGGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGT
447 TGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* * *
15353854 GGGTTTAGGCGCATCTTCATTTTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTTATAC
512 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * *
15353919 AATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
577 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
** *
15353984 TTTGGAAACTTTTTACGGGTCAGGATTTTTTTAAATTCTTTT-AGAAGGAGTATTGGCCCCAAAC
642 TTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAATT-TTTTCAGAAGGAGTATTGGCCCCAAAC
* * *
15354048 TTGCTAGCCATGATCCTTGTACTTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
706 TTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
15354112 TGTACAAGATTTTATGACCATTTGAAAAAAGTGGTCCCCAATTTCAGGACACTTT-ATTGCTACT
770 TGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCC-ATTTCA-GACACTTTAATGGCTACT
15354176 TCGCAGCAAACCGTGTAAAATCTCCAACATGCT
832 T-GCAGCAAACC-TGTAAAATCT-CAA-ATGCT
15354209 CTTTTAAGGGGGTGTGAGTTCTCGGGAGGTATTGATGAGGGATACGGGGGCC-ATATAAGGGCCA
1 C-TTTAA-GGGGTGTGAGTTCTC--GAGGT-TTGATGAGGGATA-GGGGGCCAATATAAGGGCCA
* * * * *
15354273 AGTACCAGCACCCATCGCATATCATGTGCG--CACCCTCCGGCCCCCTCGATCATCAGAACCCCA
60 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * * * ** * *
15354336 ATACCGTCGGTCAGGATCTCCGAGGATGTTGTCCCGGTAAAGAAAAATACGACACCAGCACATGC
125 ATGCCG-CGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGC
* ** ** * * * * *
15354401 GCGAGGACAGCATGTGCTGTTGCAACCCTCGATCCAGTCCGATCTTAGATTGGTAATGAACTCCA
189 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCG
* *
15354466 TATGCCTAAGTCAACCCA-CAAATGGAGCTGTACGGGCCGCTCATTACCG-GCAGAGGGGCGGGA
254 TATGCCTAAGTCAACCCACCAAA-CGAGCTGTACGGG-CGCTCA--ACCGACCAGAGGGGCGGGA
* ** * * *
15354529 TGCGCAAGCCAAGGATCGACCGGGTCC-CCTCCGCATGCTGCCGGTCCTGCTGCCGCAGCCCTCA
315 TGCACAAGCCGGGGATCGACCGGGTCCTCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCA
* * * *
15354593 GTCCGATTCGATCTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAATGAACTGG
380 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AATCAAC-GG
* *
15354658 CGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG-CAGTGGATCGATAGAGTGG
443 CGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA-TGGATCGATAGGGTGG
* *
15354722 TAGGTGGGTTTAGGCCCATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATT
507 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
* *
15354787 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTC
572 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * * * * *
15354852 ACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTATAAAATTTTTTCAAAAGGATTTTTGGCCC
637 ACGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTTAAATTTTTTCAGAAGGAGTATTGGCCC
* * *
15354916 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCGGCTAAAAACTC
701 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
15354981 GAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGT-CCCATTTCAGACACTTTAATGGCTTA
766 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TA
* *
15355045 C-AGCAG-TAACCTGT-AAATCTCAAAAATGCT
830 CTTGCAGCAAACCTGTAAAATCTC--AAATGCT
*
15355075 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTAC
1 CTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
15355140 CAGCACCCATCGCACATCATGTGCCCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCGAATGT
65 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* ** ** *
15355205 CTCTGGTCAGGTTCTCCGGTGATGGTGTCTTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGA
129 CGC-GGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * **
15355270 GCCCAGCATGTGCTACCACAACCCTCGGTTTGGTTTGATCTTAGACTGGGAATGAACTCCAAATG
193 GCCCAGCATGTGCTGCCGCAACCCTC------G---G-TC-----C-----A-G---T-CTGAT-
* *
15355335 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGT--GGGCGCTCA
232 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGC-TGTACGGGCGCTCA
** * * * *** * * *
15355398 GTCGGCCAGTGGGGCGGGATGCGCAAATTGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGAT
296 ACCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCTCCTCTGCATGCTGCCGAT
* * * ** *
15355463 CCTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
361 CCTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
15355528 AACTGACGAAACGAGCGGCGGGCGGGCGGGCACTACGTCAGCCAGAGA
426 AACCGACGAATC-AACGGCGGGTGGGCGGGCACTACGCCGGCCAGAGA
15355576 NNNNNNNNNN
Statistics
Matches: 2674, Mismatches: 319, Indels: 223
0.83 0.10 0.07
Matches are distributed among these distances:
848 1 0.00
849 166 0.06
850 2 0.00
852 2 0.00
854 1 0.00
855 1 0.00
856 1 0.00
857 2 0.00
858 2 0.00
861 6 0.00
862 54 0.02
863 5 0.00
864 5 0.00
865 434 0.16
866 115 0.04
867 29 0.01
868 87 0.03
869 54 0.02
870 18 0.01
871 18 0.01
872 31 0.01
873 318 0.12
874 38 0.01
875 254 0.09
876 48 0.02
877 120 0.04
878 475 0.18
879 4 0.00
880 2 0.00
882 2 0.00
885 1 0.00
886 3 0.00
887 3 0.00
888 67 0.03
889 88 0.03
890 95 0.04
891 46 0.02
892 30 0.01
893 2 0.00
894 15 0.01
895 29 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (860 bp):
CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
CGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACCAAACGAGCTGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCG
GGGATCGACCGGGTCCTCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAATCAACGGCGGGTGGGCGGGC
ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAAC
TTTTTACGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTATTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGT
AAAATCTCAAATGCT
Found at i:15354830 original size:873 final size:863
Alignment explanation
Indices: 15351596--15355335 Score: 4219
Period size: 865 Copynumber: 4.3 Consensus size: 863
15351586 TTTCAGACAC
* * *
15351596 TTTAA-GGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAACTACC
1 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
15351660 AGCACCCATTGTACATCATGTGCGCACACCCCCTG-CCCCTCCGATCGTCGCAACCCCAATGCCG
66 AGCACCCATCGCACATCATGTGCG--CACCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGCCG
* * * *
15351724 TC-GGTCAGGTTCTTCGACGATGGTGTCCCGGCGAAGAAAAATACGGCA-CAGCACATGCCCGAG
128 TCAGGTCAGGTTCTCCGAGGATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
15351787 CCCAGCATGTGCAGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
193 CCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGC
* * * * * * * *
15351852 CTATGTCCAACCCACGAAACGATGCTGTGCGGCCGCTCAACCGACCAAAGGGGCGGGAATGC-CG
258 CTAAGT-CAACCCACCAAATGA-GC-GTACGGGCACTCAACCGACCAGAGGGGCGAG-ATGCAC-
* * ** * * ** * * *
15351916 CAGTTCGGGGATCGGCCGGGT-CCTCCTCTGCATTTTGTCGATCCTGCTACCGCAACCTTCAGTC
318 AAG-CCAAGGATCGACCGGGTCCCT-CTCCGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTC
* * * * * * ** * * * *
15351980 CGGTCTGATCTTAGACTGAGAATGAAATCCGTAAGCCTAAGCCAACTGACGAAACGAGCGGGC-G
381 CGATCCGACCTTAGACTGGGAATGAACTCCATATCCCTAAGCCAACCGACGAATCAAGCGGACGG
* ** *** * *
15352044 -GGCGGGCGGGCACTATACCGATTAGAGAGGCGGGATACGCAAGCCATGGATC-ATTAG-GTTAG
446 AGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CATGGATCGA-TAGAG-TGG
*
15352106 TAGGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
508 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
* *
15352171 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTC
573 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * * *
15352236 ATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAATT-TTTTCAGAAGCAGTTTTGGCCC
638 ACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTTAAATTCTTTT-AGAAGGAGTATTGGCCC
* * *
15352300 CAAACTTGGTACACATGATCCTTGTATTTTTGTGGGCATGCACAAAAACATTCAGCTAAAAACTC
702 CAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
15352365 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTGAGGCACTTTAATGGCTAC
766 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15352430 TGGCAGCAAACCTGTAAAATCT-CAAATGCTC-
831 TTGCAGCAAACCTGTAAAATCTCCAAATGCTCT
* * *
15352461 TTTCAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
1 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
15352526 AGCACCCATCGCACATCATGTGCGCATACCCCCCAGCCCTCCCCGATCGCCGGAACCCCAATGCC
66 AGCACCCATCGCACATCATGTGCGC--A-CCCCCGGCCC-CCTCGATCGTCGGAACCCCAATGCC
* * * *
15352591 G-CCGGTCAGATTCTCCG-GCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
127 GTCAGGTCAGGTTCTCCGAG-GATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
15352654 AGCCCTGCATGTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTAG
191 AGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G----ATC-----C-----A-G---TCCG-A-
* * * * * * * ** *
15352719 GCCTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
230 TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACCAAATGAGCGTACGGGCACTCAA
** * * * ** * ** *
15352784 CCGGTCGGATGGGCGGGATGCACAAGCCGGGGATCGATCGGGT-CCTCCTCTACATGCTGCTGAT
295 CCGACCAGAGGGGCGAGATGCACAAGCCAAGGATCGACCGGGTCCCT-CTCCGCATGCTGCCGAT
* ** * * * * * *
15352848 CCTACTGTTGTAACCCTC-GATCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
359 CCTGCTGCCGCAACCCTCAG-TCCGATCCGACCTTAGACTGGGAATGAACTCCATATCCCTAAGC
* *
15352912 CAATCGACG----AA----AC-GA-----GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTA
423 CAACCGACGAATCAAGCGGACGGAGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG-C
* *
15352963 AACCATGGATCGATATGA-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATG
487 AAGCATGGATCGATA-GAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
**
15353027 TGATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
551 CCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * *
15353092 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGA-TTTTTTAACATT
616 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTTAA-ATT
* * *
15353156 CTTTCAGAAGGAGTATTAGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
680 CTTTTAGAAGGAGTATTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCAC
15353221 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
744 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
15353286 TTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCT-CAAATGCTCT
809 TTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCCAAATGCTCT
* *
15353340 TTCAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACC
1 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
15353404 TGCA-CCATCGCACATCATGTGCGTACACCCCCTGGCCCCCCCGATCGCCGGAA-CCCAATGCCG
66 AGCACCCATCGCACATCATGTGCG--CACCCCC-GGCCCCCTCGATCGTCGGAACCCCAATGCCG
* * *
15353467 -CAGGTCAGGTTCTCCGACGATGGTGTCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
128 TCAGGTCAGGTTCTCCGAGGATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
15353531 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
193 CCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGC
* * * * *
15353596 CTAAGTTAACCCACCAAATGAGCGTACGGGCATTCAGCCGACCAGAGGGGCGAGATGCACACGTC
258 CTAAGTCAACCCACCAAATGAGCGTACGGGCACTCAACCGACCAGAGGGGCGAGATGCACAAGCC
** * ** * *
15353661 GGGGATCGATCGGGTCCCTCTTTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCCG
323 AAGGATCGACCGGGTCCCTCTCCGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCCG
* * * *
15353726 ACCTTTGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAATCAAGCGGACAGGGAGGTG
388 ACCTTAGACTGGGAATGAACTCCATATCCCTAAGCCAACCGACGAATCAAGCGGAC--GGAGGTG
* * * *
15353791 GGCGGGCACGACGCCGGCCAGAGAGGCTGGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGTGG
451 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CATGGATCGATAGAGTGGTAGGTGG
* * *
15353856 GTTTAGGCGCATCTTCATTTTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTTATACAA
515 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* *
15353921 TGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
580 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
15353986 TGGAAACTTTTTACGGGTCAGGATTTTTTTAAATTCTTTTAGAAGGAGTATTGGCCCCAAACTTG
645 TCGAAACTTTTTACGGTTCAGGATTTTTTTAAATTCTTTTAGAAGGAGTATTGGCCCCAAACTTG
* * *
15354051 CTAGCCATGATCCTTGTACTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
710 GTAGACATGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
15354116 CAAGATTTTATGACCATTTGAAAAAAGTGGTCCCCAATTTCAGGACACTTT-ATTGCTACTTCGC
774 CAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCC-ATTTCA-GACACTTTAATGGCTACTT-GC
15354180 AGCAAACCGTGTAAAATCTCCAACATGCTCT
835 AGCAAACC-TGTAAAATCTCCAA-ATGCTCT
15354211 TTTAAGGGGGTGTGAGTTCTCGGGAGGTATTGATGAGGGATACGGGGGCC-ATATAAGGGCCAAG
1 TTTAAGGGGGTGTGAGTTCTC--GAGGT-TTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAG
* * * *
15354275 TACCAGCACCCATCGCATATCATGTGCGCACCCTCCGGCCCCCTCGATCATCAGAACCCCAATAC
62 TACCAGCACCCATCGCACATCATGTGCGCACCC-CCGGCCCCCTCGATCGTCGGAACCCCAATGC
* * * ** * * *
15354340 CGTC-GGTCAGGATCTCCGAGGATGTTGTCCCGGTAAAGAAAAATACGACACCAGCACATGCGCG
126 CGTCAGGTCAGGTTCTCCGAGGATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
** ** * *
15354404 AGGACAGCATGTGCTGTTGCAACCCTCGATCCAGTCCGATCTTAGATTGGTAATGAACTCCATAT
191 AGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
15354469 GCCTAAGTCAACCCA-CAAATGGAGCTGTACGGGCCGCTCATTACCG-GCAGAGGGGCGGGATGC
256 GCCTAAGTCAACCCACCAAAT-GAGC-GTACGGG-CACTCA--ACCGACCAGAGGGGCGAGATGC
* * *
15354532 GCAAGCCAAGGATCGACCGGGTCCC-CTCCGCATGCTGCCGGTCCTGCTGCCGCAGCCCTCAGTC
316 ACAAGCCAAGGATCGACCGGGTCCCTCTCCGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTC
* * * * *
15354596 CGATTCGATCTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAATGAA-CTGG-C
381 CGATCCGACCTTAGACTGGGAATGAACTCCATATCCCTAAGCCAACCGACG-AATCAAGC-GGAC
*
15354659 -G-GGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCAGTGGATCGATAGAGTGG
444 GGAGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCA-TGGATCGATAGAGTGG
* *
15354722 TAGGTGGGTTTAGGCCCATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATT
508 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
*
15354787 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTC
573 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
15354852 ACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTATAAAATT-TTTTCAAAAGGATTTTTGGCC
638 ACGATTTTCGAAACTTTTTACGGTTCAG-GATTTTTTTAAATTCTTTT-AGAAGGAGTATTGGCC
* *
15354915 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCGGCTAAAAACT
701 CCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
15354980 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGT-CCCATTTCAGACACTTTAATGGCTT
765 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-T
* * *
15355044 AC-AGCAG-TAACCTGT-AAATCTCAAAAATGCTC-
829 ACTTGCAGCAAACCTGTAAAATCTC-CAAATGCTCT
*
15355076 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACC
1 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
15355141 AGCACCCATCGCACATCATGTGCCCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCGAATGTC
66 AGCACCCATCGCACATCATGTG--CGCA--CCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCC
* * *
15355206 -TCTGGTCAGGTTCTCCG-GTGATGGTGTCTTGGCGAAGAAAAATGCGGCACCAGCACATGCTCG
127 GTCAGGTCAGGTTCTCCGAG-GATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *** ** *
15355269 AGCCCAGCATGTGCTACCACAACCCTCGGTTTGGTTTGATCTTAGACTGGGAATGAACTCCAAAT
191 AGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
15355334 GC
256 GC
15355336 TTAGACTGGG
Statistics
Matches: 2485, Mismatches: 283, Indels: 214
0.83 0.09 0.07
Matches are distributed among these distances:
849 165 0.07
850 5 0.00
851 3 0.00
853 2 0.00
854 1 0.00
855 1 0.00
857 2 0.00
860 3 0.00
861 6 0.00
862 52 0.02
863 5 0.00
864 10 0.00
865 462 0.19
866 112 0.05
867 27 0.01
868 85 0.03
869 56 0.02
870 15 0.01
871 20 0.01
872 23 0.01
873 323 0.13
874 34 0.01
875 254 0.10
876 53 0.02
877 114 0.05
878 460 0.19
879 16 0.01
882 2 0.00
884 1 0.00
886 1 0.00
889 1 0.00
890 89 0.04
891 6 0.00
892 24 0.01
893 6 0.00
894 16 0.01
895 30 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCA
GGTCAGGTTCTCCGAGGATGGTGTCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
AGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTA
AGTCAACCCACCAAATGAGCGTACGGGCACTCAACCGACCAGAGGGGCGAGATGCACAAGCCAAG
GATCGACCGGGTCCCTCTCCGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCCGACC
TTAGACTGGGAATGAACTCCATATCCCTAAGCCAACCGACGAATCAAGCGGACGGAGGTGGGCGG
GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCATGGATCGATAGAGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
CTTTTTACGGTTCAGGATTTTTTTAAATTCTTTTAGAAGGAGTATTGGCCCCAAACTTGGTAGAC
ATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGT
AAAATCTCCAAATGCTCT
Found at i:15357466 original size:26 final size:26
Alignment explanation
Indices: 15357437--15357487 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15357427 GGTTCGATCA
* *
15357437 TAGACTGCGAATGAACTTCGTATGCT
1 TAGAATGCGAATGAACTCCGTATGCT
*
15357463 TAGAATGGGAATGAACTCCGTATGC
1 TAGAATGCGAATGAACTCCGTATGC
15357488 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGAATGCGAATGAACTCCGTATGCT
Found at i:15358890 original size:880 final size:880
Alignment explanation
Indices: 15356578--15359232 Score: 3587
Period size: 880 Copynumber: 3.0 Consensus size: 880
15356568 NNNNNNNNTT
* * * * *
15356578 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAACTGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
** * * * * *
15356643 CCAGAGGGGTGGGATGCGTAAGTCGGGGATCGATCGGATCCCCCTCTGCGTGCTACCGATCCTAC
66 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCCTAC
* * * *
15356708 TACCGTAACCCTTGGTCTAGTTTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCG
131 TACCGCAACCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG
* *
15356773 ACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCTGGCCAGAGAGGCGAGATGCGCAAGCCGTGG
195 ACGAAAC-AGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
15356838 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT--CGTGCCAATGCCA-TTT
255 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTATGCCATGCCAATGCCATTTT
* *
15356900 TCTAGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACT
319 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
15356965 CGTTTTCTGTTTTTTAGGATTTTCGAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTTTCAGC
384 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* *
15357030 AGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCATAAAAAAA
449 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTG-TGGCATGCACAAAAAAA
* *
15357094 TTCAGCAAAAAACTCAAAGTGCACAAGATTTTTTCACCATTTGAAAAAAGTGTCCCCATTTAAGA
513 TTCAGCTAAAAACTCAAAGTGCACAAGATTTTCTCACCATTTGAAAAAAGTGTCCCCATTTAA-A
*
15357159 CACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
577 CACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15357224 TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCAT
642 TCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
15357289 GTGCG--TA-CCCCCCGGCCCTCCTGGTCGCCTGTACCCCAATGCCGCCAGTCAAGTTCTCCGGT
707 GTGCGCACACCCCCCCGGCCC-CC-AGTCGCCAGTACCCCAATACCGCCAGTCAAGTTCTCCGGT
* * * *
15357351 GATGGTGTCCTGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCA
770 GATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-TA
* * * * *
15357416 ACCCTCGGTCTGGTTCGATCATAGACTGCGAATGAACTTCGTATGCTT
834 ACCCTCGTTC-GATCCGATCTTAGACTGCGAATGAACTTCGTATGCTC
* * * **
15357464 AGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * * *
15357529 CCAGAGGGGCAGGACGCCCAAGCCGGGGATCAGTCGGGTCCCCTTCTGCATGCTACCGATCCTGC
66 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCCTAC
* * * * * * *
15357594 TACCGCAACCATCGGTCCGGTCTAATCTTAGACTGGAAATGAAATCCGTATGCCTAAGCCAACCA
131 TACCGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG
*
15357659 ACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGG
195 ACGAAAC-AGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
15357724 ATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATT-TCTGCCAGTGCCAATGCCATTTT
255 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTATGCCA-TGCCAATGCCATTTT
* *
15357788 TCTGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACT
319 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
15357853 CGTTTTTTATTTTTCACGATTTATGAAACTTTTTATC-ATTCGGGATTTTTTAAAATTTTTTTAG
384 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCAG
* ** *
15357917 AAGGATTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
448 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTGGCATGCACAAAAAAA
15357982 TTCAGCTAAAAACTCAAAGTGCACAAGATTTTCTCACCATTTGAAAAAAGTGTCCCCATTTCAAA
513 TTCAGCTAAAAACTCAAAGTGCACAAGATTTTCTCACCATTTGAAAAAAGTGTCCCCATTT-AAA
* * ** * *
15358047 CTCTTTAATGGCTACTGGTTGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGAGTGTGAGTTC
577 CACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15358112 TCCAGGTTTGATGATGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
642 TCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
15358177 GTGCGCACACCCCCCCGGCCCCCAGTCGCCGGTACCCCAATACCGCCAGTCAGGTTCTCCAGTGA
707 GTGCGCACACCCCCCCGGCCCCCAGTCGCCAGTACCCCAATACCGCCAGTCAAGTTCTCCGGTGA
* * *
15358242 TGCTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTCATAAC
772 TGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-TAAC
* * * *
15358307 CCTCAGTTCGATCCGATCTTATAATGTGAATGAACTACGTATGCTC
836 CCTC-GTTCGATCCGATCTTAGACTGCGAATGAACTTCGTATGCTC
15358353 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * * ***
15358418 CCAAAGGAGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTACATGCTGTTGATCCTAC
66 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCCTAC
** * * * * *
15358483 TGTCGCAACCCTCGGTCTGCTCCGATGTTAAACTGGGAATGAACTCCTTATGCCTAAGCCAATCG
131 TACCGCAACCCTCGGTCTG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG
* * * * *
15358548 ATG-AA-A-CGGACGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGAGCAAGCCGTGGATTGA
195 ACGAAACAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * *
15358610 TAGGGTGGTAGGTGGTTTTATGCACATCTTCATATTCT-TGCCATGCCAATGCCATTTTTTTGGC
260 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTATGCCATGCCAATGCCATTTTTCTGGC
15358674 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
15358739 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAGAATTTTTTCAGAAAGAGT
390 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGT
*
15358804 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTGGCATGCACAAAAACATTCAGCT
455 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTGGCATGCACAAAAAAATTCAGCT
* * * * * *
15358869 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTCTCCCCATTTTAGACACTTTA
520 AAAAACTCAAAGTGCACAAGATTTTCTCACCATTTGAAAAAAGTGTCCCCA-TTTAAACACTTTA
15358934 ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
584 ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* * * * *
15358999 TTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGTACATCCTGTGCGCA
649 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * ** * * *
15359064 CACCCCCTCGGCCCCCCACGATCACCAGAACACTAATTTCGTCGGTCAAGTTCTCCGGCGATGGT
714 CACCCCCCCGG-CCCCCA-G-TCGCCAGTACCCCAATACCGCCAGTCAAGTTCTCCGGTGATGGT
*
15359129 GTCCCGACGAAGAAAAATGCGGCACCAGCAC-TGCCCGAGCCCAGCATGTGCTG-CTGCAACCCT
776 GTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCT--AACCCT
*
15359192 CGGTCTC-ATCCGATCTTAGACTGGGAATGAACTTCGTATGC
839 C-GT-TCGATCCGATCTTAGACTGCGAATGAACTTCGTATGC
15359233 CTAAGCCAAC
Statistics
Matches: 1552, Mismatches: 191, Indels: 56
0.86 0.11 0.03
Matches are distributed among these distances:
879 1 0.00
880 381 0.25
881 95 0.06
882 62 0.04
883 62 0.04
884 2 0.00
885 6 0.00
886 253 0.16
887 12 0.01
888 359 0.23
889 298 0.19
890 10 0.01
891 11 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
CCAGAGGGGCAGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCCTAC
TACCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA
CGAAACAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTATGCCATGCCAATGCCATTTTTCTGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTGGCATGCACAAAAAAATTCAGCTA
AAAACTCAAAGTGCACAAGATTTTCTCACCATTTGAAAAAAGTGTCCCCATTTAAACACTTTAAT
TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCAGTCGCCAGTACCCCAATACCGCCAGTCAAGTTCTCCGGTGATGGTGTCCC
GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTAACCCTCGTTCGA
TCCGATCTTAGACTGCGAATGAACTTCGTATGCTC
Found at i:15363199 original size:26 final size:26
Alignment explanation
Indices: 15363163--15363215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15363153 CTGGTCTGAT
* *
15363163 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15363189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15363215 C
1 C
15363216 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15364084 original size:26 final size:26
Alignment explanation
Indices: 15364055--15364107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15364045 CTGATCCGAT
*
15364055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15364081 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15364107 C
1 C
15364108 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15364531 original size:889 final size:885
Alignment explanation
Indices: 15362532--15364669 Score: 3133
Period size: 889 Copynumber: 2.4 Consensus size: 885
15362522 CCGTAACCCT
* *
15362532 CGGCTAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCT
1 CGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-GGCACATCT
* * *
15362597 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTTAGCC
65 TCATATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
15362662 TTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAC
130 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTAAA
* * *
15362727 GATTCAGGATTTTTTAAAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
195 G-TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
15362792 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGAC
259 TGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
15362857 CATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
323 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
15362922 CAAATGCTCTTTAAAGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
388 CAAATACTCTTTAAAGGGCTGCGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
* * *
15362987 CCAAGTAGCAGCACCCATCGCACATCATTGGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAAC
453 CCAAGTACCAGCACCCATCGCACATCATTGGCACACACCCCCCCGCCCCCCCCGATCGCCGAAAC
* * *
15363052 CCTAATGCCGCTGGTCAGGTTCTCCGACGATAGTTCCCGACGAGGAAAAATACGGCACCAGCACA
518 CCCAATGCCGCTAGTCAGGTTCTCCGACGATAGTTCCCGACGAAGAAAAATACGGCACCAGCACA
* ** * * *
15363117 TGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACT
583 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
* * ** * * *
15363182 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCGCAAAACGAGTGTGCAGGC
648 CCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAACTCAACCCGAAAAACGAGCGTACAGGC
** * * * *
15363247 ACATAGCCGGCCAGAGGGGCAGGATGCACAAGTTGGGGATCGGTCGGGTCCCCCTCTGCGTACTG
713 ACATAGCCGGCCAGAGGGG-AGGATGCACAAGCCGAGGATCGCTCGGGTCCCCCTCAGCGTACTA
** ** * *
15363312 CCGATCCTACTGTCGTAACCGTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCT
777 CCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCT
* ** * *
15363377 AAGCCAACCGACGAAACGAGTGGGCGGGCGGACGGGCACTACGC
842 AAGCCAACCGACCAAACGAACGGGCGGGCGGACGGGAACGACGC
* * * *
15363421 CGACTGGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTATGCACATCT
1 CGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-GGCACATCT
** *
15363486 TCATATTTCTACTGTGCCAATGCCATTTTTCTAGGTTGTAAATTCATACAATGGTCCCTTAAGCC
65 TCATATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
15363551 TTCATGTGAAATTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTCAAAACTTTTTA
130 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAA--TTTTA
** * *
15363615 TGGTTCGGGATCTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCC
193 AAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
15363680 TTGTTTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
258 TTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
15363745 CCTTTTG-AAAAAGCTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
322 CCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
15363809 CTCAAATACTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAG
386 CTCAAATACTCTTTAAAGGGCTGCGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAG
15363874 GGCCAAGTACCAGCACCCATCGCACATCA-TGTGCACACACCCCCCCTGCCCCCCTCCGATCGCC
451 GGCCAAGTACCAGCACCCATCGCACATCATTG-GCACACACCCCCCC-GCCCCCC-CCGATCGCC
* * * *
15363938 GGAACCCCAATGTCG-TCAGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCTC
513 GAAACCCCAATGCCGCT-AGTCAGGTTCTCCGACGATAGT-TCCCGACGAAGAAAAATACGGCAC
*
15364002 CAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
576 CAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* *
15364067 ATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAACTCAACCC-AAGAAATGTGC
641 ATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAACTCAACCCGAA-AAACGAGC
* * * *
15364131 GTACGGGCGC-TCAGCCGGCCAGAGGGTG-GGATGCGCAAGCCGAGGATCGACT-GGGTCTCCCT
705 GTACAGGCACAT-AGCCGGCCAGAGGG-GAGGATGCACAAGCCGAGGATCG-CTCGGGTCCCCCT
* * * * *
15364193 CAGCGTGCTACCGATCCTATTACCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACT
767 CAGCGTACTACCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACT
*
15364258 CCATATGCCTAAGCCAACCGACCAAACGAACGGGCGGGCGGGCGGGAACGACGC
832 CCATATGCCTAAGCCAACCGACCAAACGAACGGGCGGGCGGACGGGAACGACGC
* *
15364312 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTGCGCACATCT
1 CGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTG-GCACATCT
* *
15364377 TCATATTTCTACCATGCCAATGCCATTTTTCTACCTCGTAAATTCATACAATGGTCCCTTAAGCC
65 TCATATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
**
15364442 TTCATACGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTAAA
130 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTAAA
* *
15364507 GCTCGGGATTTTTTAAAA-TTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
195 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
15364571 GTATTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
15364636 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
15364670 TGCCTAAGTC
Statistics
Matches: 1115, Mismatches: 117, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
888 21 0.02
889 559 0.50
890 39 0.03
891 331 0.30
892 164 0.15
893 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (885 bp):
CGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGCACATCTT
CATATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTAAAG
TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATACTCTTTAAAGGGCTGCGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATTGGCACACACCCCCCCGCCCCCCCCGATCGCCGAAACCCC
AATGCCGCTAGTCAGGTTCTCCGACGATAGTTCCCGACGAAGAAAAATACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGAATCAACTCCGTATGCCTAACTCAACCCGAAAAACGAGCGTACAGGCACA
TAGCCGGCCAGAGGGGAGGATGCACAAGCCGAGGATCGCTCGGGTCCCCCTCAGCGTACTACCGA
TCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
CAACCGACCAAACGAACGGGCGGGCGGACGGGAACGACGC
Found at i:15366408 original size:26 final size:26
Alignment explanation
Indices: 15366379--15366431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15366369 CTGGTCCGAT
15366379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15366405 CTTAGACTGGGATTGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15366431 C
1 C
15366432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15367289 original size:885 final size:881
Alignment explanation
Indices: 15364668--15371521 Score: 8485
Period size: 885 Copynumber: 7.8 Consensus size: 881
15364658 TCAGACACTT
* *
15364668 TATGCCTAAGTCAACCCACGAAACGAGTC-TGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCG
1 TATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCG
* * * * * * * *
15364732 CAAGCCAGGCATTGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGTACCCCTCTATCC
65 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCC
* * *
15364797 GGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGG
130 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A--GGGCGGG
* * * *
15364862 CGGGCGGGCACTACTCCGGCCAGGGATGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGT
191 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
15364927 GGGTTTCGGTACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
256 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* *
15364992 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCAG-TTTCTATTTTTCATGA
321 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGA
* *
15365056 TTTTTAAAACTTTTTATGGTTCTG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
385 TTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAA
* * * * *
15365120 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAAATTGAAG
448 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* ** * *
15365185 TGTACAAGATTTTGTGACCTTTTGAAAAACCTGTCCCCATTTCAGACACTTTAATAGCTACTAGC
513 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
15365250 AGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
578 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
15365315 AGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGTACAGCCCCCCCGG
643 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCC-A
* * * * *
15365380 GCCCCCCCGATCGCCGGAACCCCAATGCCCCCGGTTAGGTTCTCCGGCGCTGGTGTCCTGACGAA
705 GCCCCCCCGATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
* * *
15365445 GAAAAATG-GGACACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCTGATCC
769 GAAAAATGCGG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
*
15365509 GATCTTACACT-GG---G-A------ATG---A-AC---------TTCG
833 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAATTCG
* * * * *
15365534 TATGCCTAAGTCAACCCATGAAATGAACGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
* * * ** * * *
15365599 AAGCCGGGGAT-TAACGGGGTCCCCCTCTTCGTGCTATCGATCCTGCTATCGTAACCCTCTATCC
66 AAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCC
* *
15365663 TGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGA
130 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A---GG--G-
* * *
15365728 CGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATTGATAGGGTGGT
187 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
15365793 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCAATTTTTCTGGCTAGTAAATTC
252 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTC
* *
15365858 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCA
317 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** *
15365923 C-ATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
382 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCA
* ** *
15365987 AGCTTGGTAGATATCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
446 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
15366052 AGTGTACAAGATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTG
511 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
15366117 GCAACAAGCCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
576 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
15366182 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
641 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCA
* * * * * *
15366247 GCCCCCCTGATCGCCGGAACCATAATGCCGCCGGTCAGGTTCTCCTACGATGGTGTCCTGACCAT
705 GCCCCCCCGATCGCCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
** * * * *
15366312 GAAAAATGCGGTGCCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGATCTGGTCCG
769 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
15366377 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTGAATTCCG
834 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA-TGAATT-CG
* * * * *
15366427 TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCTAAAAGGGCGGGCTGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
* * * * *
15366492 AAGCCGGGGATCGATCGGGTCCCCTTCTGCATGCTGTCGATCCTGCTGCCGTAACCCTCAGAT-C
66 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC-GATCC
* * *
15366556 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGGGCAGGCGGG
130 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGGGCGGGCGGG
* * * ** * * *
15366621 TGGGCACTACGCCAGCCAGAGAGGTGGGATGCGCAAGCCGCAGATCCATAGAGTGGCAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
15366686 TTAGGCACATCTTCATATTTCTACCGTGCCAATCCCATTTTTTTGGCTTGTAAATTCAGACAATG
260 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
15366751 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
325 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
15366816 GAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTA
390 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15366880 GATGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
455 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
15366945 GATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGATACTTTAATTGCTACTGGTAGCAAAC
520 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15367010 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
585 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15367075 CAATATAACGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCAGCCACCCCC
650 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCC-CCCCC
* * * *
15367140 GATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTATCCCGACGAAGAAAAATA
713 GATCGCCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATG
*
15367205 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCGCAACCCTCGGTCCGGTCCGATCTTAGA
777 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* *
15367270 CGGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTG
842 CTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAATTC-G
* * * * *
15367312 TATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCAGCTAGAGGGGCGGGATGCAC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
** * * * *
15367377 AAGTTGTGGTTC-AGTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTC-AGTG
66 AAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TC
* * * * * *
15367440 CGGTCCGATCTTTGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGGGCGGGCGA
129 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGGGCGGGCGG
* ** * * *
15367505 GTGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATTGGGTGGTAGGTGGG
194 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
***
15367570 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTCAATTGTAAATTCATACAAT
259 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
* * *
15367635 GGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
324 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
15367700 TGAAACCTTTTACGGTTCGAGA-TTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGG
389 TGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
15367764 TAGACGTGATCCTTGTTTTTTTTTTGGCATGCACCAAAAAAATTCAGCTAAAAACTTGAAGTGTA
453 TAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * *
15367829 CAAGATTTTGTGACCATTGGAAAAAATTATCCACATTTCAGACACTTTAATAGCTACTGGCAGCA
517 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15367894 AACCTGTAAAATCTCAAATACTCTTTAAGAGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGG
582 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
15367959 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCACGTGCCCACACCCCCCAGGGCCCC
647 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-GCCCCC
* * * ** *
15368024 CCGATCGTCGAAACACCAATGTCATCGGTCAGGTTCTCCGACGATGGTGTCTCGACGAAGAAAAA
711 CCGATCGCCGGAAC-CCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAA
** * * *
15368089 TATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTA
775 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
15368154 GACTGGGAATGAACTCCGTATGC-----C-----T-AA---G
840 GACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAATTCG
* * * * * *
15368182 --T--C-AA--C-A--CACGAAACGAGCATGCGAGCGCTTAGCCGTCCA-AGGGGCGAGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
* * *
15368236 AAGCAGGGGATGCGACCGGGT--CCCTCTGCGTGCTGTCCGATCTCTGCGT---GTAA-CCTCTG
66 AAGCCGGGGAT-CGATCGGGTCCCCCTCTGCGTGCTG-CCGATC-CTGC-TACCGCAACCCTC-G
* * * * * ** *
15368295 -TTCTGTCTTGATCTTGAAGACTGGG-ATGAAATTCGTA-GGCTAAGCCAAGTGACGACAA---C
126 ATCCGGTC-TGATCTT--AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGGGC
*** *
15368354 AAACGAGGCGGGCACTACGCAGGCCAGAGA-GCGGGATGCGCAAG-CGTGGATCGAT--GGTGGG
188 GGGCG-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT-GG
*
15368415 TAGGTGGGTTTAGG--CATCTT-ATATTGTC-GCCATG-CAATGCCATTTTTTTGGCTTGTAAAT
251 TAGGTGGGTTTAGGCACATCTTCATATT-TCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAAT
* * *
15368475 TCATACAATGGTCCCTTAAGCTTTCATTTGAAG-TTCATGGCAAGATGA-TCGTTGTTCCTATTT
315 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT-TT-CTATTT
* **
15368538 TTCATGATTTTTGAAACTTTTTATTGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
378 TTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT-AGAAGGAGTTTTGG
* * * *
15368602 CCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCGTGCACAAAAACATTCAGCTAAAAA
441 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
15368667 CTCGAAGTGTACAAGATTTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTACACACTTTAATGG
506 CTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
15368732 CTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAA-GGGGTGTGAATTCTTGAGGTTTGA
570 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
15368796 TGAGGGATAGGGGTCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
635 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
15368861 CCCCAGTCCCCCCC-ATCGCTGGAAGCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGGTGTCCC
700 CCCCAG-CCCCCCCGATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCC
** * * * *
15368925 GGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT
763 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * ** *
15368990 GCTTCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGACCTTCG
828 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-ATGA-ATTCG
* * * * *
15369046 TATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGACCAGAGGGGCAGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
** * * * * ** * * *
15369111 AAGCCGGGGATCGGCCAGGTCCTCCTCTACGTGCTACCGATCCTGCTGTCGCAACTCTCGGTCTG
66 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCG
* * * *
15369176 GT-TCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAATGGGCGGGCGGA
131 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGGGCGGGC---
* *
15369240 TGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGT
192 -GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15369305 GAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATAC
256 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* *
15369370 AATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTTTTCACGAT
321 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
15369435 TTTTGAAACTTTTTACAGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
386 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAAC
*
15369499 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGT
449 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15369564 GTACAAGATTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGC
514 GTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
15369629 AGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTAATTAGGGTT
578 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
15369693 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGTC
643 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG-C
* * * * * *
15369757 CCCCCC-ATCACAGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGGTGTCCTGACAAAGA
707 CCCCCCGATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
* * * * *** * *
15369821 TAAATGTGACACCAGCACATGCCCGAACCCAGCATGTGCTATTGCAACCCTCAGTCCGATCCGAT
771 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
*
15369886 CTTAGACT----AGGAA-----TA-----A-AC---------TTCG
836 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAATTCG
* * * *
15369908 TATGCCTAAGTCAACCCACGAAACCAGTGAGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
* * * * * *
15369973 AAGCCAGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCAGCTATCGCAACCCTCGGTCCG
66 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCG
** * *
15370038 GTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGA-TAAAACGGGCGAGCGGG
131 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA-GGGCGGGCGGG
* * * * * * * * *
15370102 CAGGCACTACGCCAGCCAAAGAGGTGGGATACGCAAGCCATGGATCCATAGAGTGGCAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** *
15370167 TTAGGCACATCTTCATATTTCCACCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATG
260 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
* *
15370232 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTT
325 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
15370297 GAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
390 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15370362 AGACGTGATCCTTCTATTTTTTTTGGCATGCGCAAAAAAATTCAACTAAAAACTCGAAGTGTACA
454 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15370427 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGGTACTGGCAGCAAA
519 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* **
15370492 CCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
584 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15370557 CCAATATAA-GGCCAAGTACCAGCACCCATCGCAC--C----G-G-------TCCA----CCCC-
649 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCG
*
15370602 ATCGCCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGC
714 ATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGC
* * * * *
15370667 GGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGAC
778 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
15370732 TGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTTCG
843 TGGGAATGAACTCCGTATGCTTAGACTGGG-ATGAA-TTCG
* *
15370773 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
* * * * * * * ***
15370838 AGGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCCCAACCCTCGGTATA
66 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCG
* * * * **
15370903 ATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACA-GGCGGGCATG
131 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGGGCGGGCGGG
*
15370967 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15371032 TTAGGCACATCTTCATATTTTTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
260 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
* *
15371097 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTAGTTTTCTATTTTTCACGATTTTT
325 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
15371162 GAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTTTCAGAAGGAGTATTGGCCCC-AACTTGGT
390 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
15371226 AGACGTGATCCATGTATTTTTGTTGACATGCACAAAACAATTCAGCTATAAACTCAAAGTGTGCA
454 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15371291 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACGTTAATGGCTACTGGCAGCAAA
519 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15371356 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGATTGAAGAGGGATAGGGGG
584 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
15371421 CCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCTCGACCCCCC
649 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-AG-CCCCCC
* * *
15371486 CGATCGCTGGAACCCTAATGCCACCGGTCAAGTTCT
712 CGATCGCCGGAACCC-AATGCCGCCGGTCAGGTTCT
15371522 ATTTTTGTTG
Statistics
Matches: 5204, Mismatches: 603, Indels: 342
0.85 0.10 0.06
Matches are distributed among these distances:
839 116 0.02
843 4 0.00
844 3 0.00
847 5 0.00
848 147 0.03
849 218 0.04
850 154 0.03
851 9 0.00
852 3 0.00
853 18 0.00
854 12 0.00
855 17 0.00
856 20 0.00
857 116 0.02
858 381 0.07
859 37 0.01
860 41 0.01
861 5 0.00
862 163 0.03
863 2 0.00
864 192 0.04
865 418 0.08
866 167 0.03
867 122 0.02
868 14 0.00
869 291 0.06
870 181 0.03
871 3 0.00
872 3 0.00
873 3 0.00
874 48 0.01
875 41 0.01
876 35 0.01
877 6 0.00
878 3 0.00
879 6 0.00
881 2 0.00
882 24 0.00
883 16 0.00
884 289 0.06
885 706 0.14
886 274 0.05
887 203 0.04
888 139 0.03
889 364 0.07
890 15 0.00
891 5 0.00
892 2 0.00
893 157 0.03
894 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGGGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGAT
CGCCGGAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGATGAATTCG
Found at i:15368572 original size:26 final size:26
Alignment explanation
Indices: 15368533--15368585 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15368523 TCGTTGTTCC
* * *
15368533 TATTTTTCATGATTTTTGAAACTTTT
1 TATTGTTCAGGATTTTTGAAAATTTT
*
15368559 TATTGTTCAGGATTTTTTAAAATTTT
1 TATTGTTCAGGATTTTTGAAAATTTT
15368585 T
1 T
15368586 TCAGAAGGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.06, G:0.09, T:0.60
Consensus pattern (26 bp):
TATTGTTCAGGATTTTTGAAAATTTT
Found at i:15369048 original size:26 final size:26
Alignment explanation
Indices: 15368991--15369050 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
15368981 CCTCGGTCTG
15368991 CTTCG-AT-CTTAGACTGGGAATGAA
1 CTTCGTATGCTTAGACTGGGAATGAA
*
15369015 CTAT-GTATGCTTAGACTGGGAATGAC
1 CT-TCGTATGCTTAGACTGGGAATGAA
15369041 CTTCGTATGC
1 CTTCGTATGC
15369051 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
24 3 0.10
25 4 0.13
26 24 0.77
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTCGTATGCTTAGACTGGGAATGAA
Found at i:15370761 original size:26 final size:26
Alignment explanation
Indices: 15370725--15370775 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370715 CCAGTCTGAT
15370725 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
15370751 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15370776 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15371925 original size:26 final size:26
Alignment explanation
Indices: 15371889--15371941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15371879 CCGGTCTGAT
* *
15371889 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15371915 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15371941 C
1 C
15371942 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15372895 original size:100 final size:100
Alignment explanation
Indices: 15372722--15372904 Score: 285
Period size: 100 Copynumber: 1.8 Consensus size: 100
15372712 AAAAATGCAG
* * * *
15372722 CACCAACACATGCCCTAGCCCAGCATGTGCCGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTG
1 CACCAACACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
15372787 GGAATGAACTCCGAATGCTTAGACTGGGAATACGA
66 GGAATGAACTCCGAATGCTTAGACTGGGAATACGA
* * * *
15372822 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGGTCTTAGACTG
1 CACCAACACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
*
15372887 GGAATGAACTCCGTATGC
66 GGAATGAACTCCGAATGC
15372905 CTAAGTCAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 74 1.00
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.20
Consensus pattern (100 bp):
CACCAACACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
GGAATGAACTCCGAATGCTTAGACTGGGAATACGA
Found at i:15374584 original size:26 final size:26
Alignment explanation
Indices: 15374555--15374607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15374545 CTGGTCCGAT
*
15374555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15374581 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15374607 C
1 C
15374608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15375473 original size:26 final size:26
Alignment explanation
Indices: 15375443--15375493 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15375433 CCGGTCCGAT
15375443 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
15375469 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15375494 GCCTGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15375903 original size:890 final size:887
Alignment explanation
Indices: 15373707--15377549 Score: 5025
Period size: 886 Copynumber: 4.3 Consensus size: 887
15373697 CCGATCTGAT
* * * ** *
15373707 CTTAGACTGGGAATGAACTCCATATGCCTAATTCTACCCTTGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
15373772 CGACCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCACTCTTCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
15373837 TGCTACCGCAACCCTCAGTCCCATCTGATCTTAGACTGGGAATAAACTTTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* ** * * * *
15373902 CCGATGAAACGAGC-GGCGGATGGACAGGTACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCACTA-CTCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
15373966 TGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATTG-CAATGCAATT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCA-TGCCAATGCCATT
* * *
15374030 TTTTTGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGATGA
324 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
* *
15374095 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCA
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCA
* * *
15374160 GAAAGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAA
454 G-AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
15374225 TTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAA
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAG
* * * *
15374290 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGTGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCT
* * *
15374355 CTTGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
15374420 TGTGCGCACACCCCCCC-GTCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCT-C--
713 TGTGCGCACACCCCCCCGGTCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * **
15374481 CGA-------CGA--AA-AAAATTACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGTCGCA
778 CGATGGTGTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
*
15374536 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15374581 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * * * * *
15374646 TTACCAGAGGGGTC-GGATGCGTAAGTCGGGGATC-AACGGGT-CCCTTCTGTGTGCTGTCGATC
66 CGGCCAGAGGGG-CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
15374708 CTACTGCTGCAACCCTCGATCCGATCCGATCTTAGACTGAGAGTGAACTTCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * * *
15374773 ACTGACGAAACGAGCGAGCGGGCAGG-CGGGCACTATTTCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCGGGC-GGACGGGCACTA-CTCGGCCAGAGAGGCGGGATGCGCAAGC
*
15374837 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
*
15374902 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
323 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
* * ** *
15374967 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACCGTTTGGGATTTTTTAAACTTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* *** * *
15375032 AGAAGCACTTTTGGTATCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAA
453 AGAAG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
15375097 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAA-TATCCCTATTTC
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCTATTTC
* *
15375161 AGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
15375226 CTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAT
646 CTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * **
15375291 CATGTGCGCACACCCCCCCGGTCGCCCTGATCTTCGGAACCCCAATGCCATCGGTCAGGTTCTCC
711 CATGTGCGCACACCCCCCCGGTCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
15375356 GGTGATGGTGTCTCGACGATGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
776 GGCGATGGTGTC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
15375421 GTAACCCTCGCTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATA
840 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
15375469 CTTAGACTGGGAATGAACTCCGTATGCCTGAGAAAACCCACGAAACGATCGTGCGGTCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
15375534 CGGCCAAAGGGGCCAGATGCACAAGCCGGGGATCCACCGGGTCCCCCTCTGCGTACTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15375599 TGCTGCCACAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * *
15375664 CCGACGAAACAAGTGGGCGAGCGGACGGGCACTACTCCAGCCAGAGAGGCGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCACTACT-CGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15375729 TGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
* *
15375794 TTCTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAAC
325 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAC
* **
15375859 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGGGTTTGGGATTTTTTAAAATTTTTTCAA
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-A
* * * * *
15375924 AAAGAGTTTTGGGCCCAAACTTGGTATACGTGATCCTTGTATTTATGTAGGCATGCACAAAAAAA
454 GAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
15375989 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGA
*
15376054 CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGCTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTC
*
15376118 -CTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
649 TC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
15376182 TGCGCGCATACCCCCCCGG---CCCCTATCGCCGAAACCCCTATGCCTCCGGTCAGGTTCTCTGG
713 TGTGCGCACACCCCCCCGGTCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * * *
15376244 CAATGATGTCCCGACGAAAAAAAAAGCGGCACCAAG-ACATGCCCGAGCCCAGTATGTCCTGCCG
778 CGATGGTGT-CCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTACCG
* * * * *
15376308 CAACCCTCGGTTCGGTCTGATCTTATACTGGGAATGAACTTCATATG
841 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15376355 CTTAGACTGGGAATGAACTCTGTATGCCTAAGACAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
15376420 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
15376485 TGCTGCCACAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * * *
15376549 ACCGACGAAACGAGCGGGCGGGTGGGTC-GGCACTACGTCAGCCGGAGAGGCGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCGGG-CGGACGGGCACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGC
* * * * *
15376613 CATTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACCATGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
* * * *
15376678 TTTTCTAGCCTATAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGATG
323 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
* * *
15376743 ACTCGTTTTCTATTTTTCTCGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATCTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
** ** * * ***
15376808 AGAAGGAGTTTCAGCCCCAAACTTATTAGACATGGTCCTTGTATTTTTGTTGATGTGCACAAAAA
453 AGAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
15376873 AATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
* * *
15376938 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGC
* * * * *
15377003 TCTTGAGGTTTGATGAGGGATAGGGGGCCAGTAGAAGGGCTAAGAACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
15377068 TTGTGCACACACCGCCCCGGCCCCCCCGATCACCGAAACCCCAATACCGCCAGTCAGGTTCTCTG
712 ATGTGCGCACACCCCCCCGGTCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
15377133 GCGATGGTGTCCTGGCAAAGAAAAATGCGGTACCAGCACATGCCCAAGCCCAACATGTGC-AGCC
777 GCGATGGTGTCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CC
* **
15377197 GCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
840 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15377245 CTTAGATTGGGAATGAACGCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * *
15377310 CGG-CAGAAGGGCGAGACGCGCAAGCCGGGGATCGACCCATTCCCCCTCTACATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
15377374 TACTGCCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * *
15377439 CCGATGAAATGAGCGGGCGGGCGGGCGGGCACTACATTGGCCAGAGAGAG-GGGATGCACAAGCC
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCACTAC-TCGGCCAGAGAG-GCGGGATGCGCAAGCC
*
15377503 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC-TATTTTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
15377550 CATGATTTTT
Statistics
Matches: 2594, Mismatches: 329, Indels: 78
0.86 0.11 0.03
Matches are distributed among these distances:
872 88 0.03
873 469 0.18
874 130 0.05
875 2 0.00
877 2 0.00
885 7 0.00
886 678 0.26
887 91 0.04
888 173 0.07
889 301 0.12
890 649 0.25
891 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGACGGGCACTACTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGA
AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGTCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGGTGTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15377248 original size:26 final size:26
Alignment explanation
Indices: 15377219--15377271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15377209 CCGGTCTAAT
*
15377219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
15377245 CTTAGATTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
15377271 C
1 C
15377272 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:15378902 original size:26 final size:26
Alignment explanation
Indices: 15378851--15378903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378841 CTGGTCCGAT
* *
15378851 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15378877 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15378903 C
1 C
15378904 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15379768 original size:26 final size:26
Alignment explanation
Indices: 15379732--15379784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15379722 CCAGTCCGAT
* *
15379732 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15379758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15379784 C
1 C
15379785 CTAAGAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15380647 original size:26 final size:26
Alignment explanation
Indices: 15380618--15380670 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15380608 CCGGTCCGAT
*
15380618 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15380644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15380670 C
1 C
15380671 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15380872 original size:886 final size:889
Alignment explanation
Indices: 15377540--15389195 Score: 15307
Period size: 889 Copynumber: 13.2 Consensus size: 889
15377530 TAGGCACATC
* * * ** * *
15377540 TTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTCATAAGAA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
** * *
15377605 GTTTTGGTACCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
15377670 CTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15377735 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
15377800 GTTTGATGAGGGATATGGGGCCAATATATA-GGCCAAGTACCAGCACCCATCGCACATCACGTGC
261 GTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * * *
15377864 GTACACCCCCTCAGCCCCCCCAATAGCCGGAGCCCCAATGCCGCCGGTTAGGTTCTCCGACGATG
325 GCACACCCCC-CGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * *
15377929 GTGTCCCGACCAAAAAAAAAT--GGCACCAGCACATGCCCGAGCCTAGTATGTGCTGCCACAA-C
389 GTGTCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
15377991 C-C--TC-GGTCCGA---T---C---------A----G-AT-CTTAGACTGGGAATGAATTCCGT
453 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
15378031 ATGCCTAAGTCAACCCACGAAACAAGCATCCGGGCCCTCAGTCGGCCAGAGGGGCTGGATGCGCA
518 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * * *
15378096 AGTCAAGGATTGACCGGGTCCCCATCTACGCGCTGTCGATCCTGCTACCGTAACCTTCGGTCCGG
583 AGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGG
* * * *
15378161 TCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGATGAAACGA--------GCG
648 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
15378218 GGCGGGCACTACGT-TGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTG
713 GGCGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15378282 GGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
777 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
* * *
15378347 ATGGTCCCTTAAGCCTTCATGTGAACTTTCATGGCAAGACGGCTCATT
842 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
15378395 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGAA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
** * * *
15378460 GTTTTGGTACCAAACGTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAATTCA
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCA
* * * *
15378525 GCTAAAAACTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACT
130 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
15378590 TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGA
195 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
15378655 GGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
260 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
15378720 GCACACCCCCTCGCCCACCCT-GATCGTCGGAACCCCAATGTCGTCGGTTAGGTTCT-------T
325 GCACACCCCC-CGGCC-CCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * *
15378777 CG-G---C-A--AAGAAAAATGTGGCACCAGCACATGCCCTAGCCCAACATGTGCTGCCGCAACC
388 GGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
15378835 CTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCAT
453 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * **
15378900 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCACCCGACCAGAGGGGCGGGATATGCA
518 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * *
15378965 AGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGA
583 AGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGG
* *
15379030 TCCGATCTTAGACTGGGAATGAACTCCGGATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
648 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * * *
15379095 GGTGGGCACTACTCCGACCAAAGAGGCAGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGG
713 GGCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
15379160 GTTTAGGCACATCTTCATATTTCTGCAATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
778 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
15379225 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
15379272 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-----T---AAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
** ** * *
15379329 CATTTGGCATCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AATAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
15379393 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15379458 TAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCAAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
15379522 GTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCATATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** ** *
15379587 CACAACCCCCTCGGTGGCCCT-GATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
326 CAC-ACCCCC-CGG-CCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** * * *
15379651 GGTGTCCCGGTGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACC
388 GGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
** * *
15379716 CTCGGTCCAGTCCGATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACTGGGAATGAACTCCGT
453 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * * *
15379781 ATGCCTAAGAAAACCCACGAAACCAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCCGGATGCGCA
518 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * * *
15379846 AGTCGAGGATCGATCGGGTCCCCCTCTGCTTGCTGCCAATCTTACTGCCGCAACCCTCGGTTCGA
583 AGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGG
* * * * *
15379911 TCCGATCTTAAACTGGGAATGGACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCG
648 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* *
15379976 GGCGGGCACTACTCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
713 GGCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
15380041 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAA
778 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
15380106 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
15380153 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * ** * *
15380218 GTTCTGGGCCCAAACTTGGTAGGTGTGATCCTTTTATTTTTGTAGGCATGCACAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
15380283 CTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
15380348 TAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
15380412 GTTTGGTGAGGGATAGGGGGCCAATATAA-GGTCAATTACCAGCACCCATCGCATATCATGCGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * ** *
15380476 CACACCCCCGCGGCCCCCTC-ATCGCCGGAACCCCTATGCCGCCGGTGAGGTTCTTTGGCAATGG
326 CACACCCCC-CGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * * **
15380540 TGTCCCGACGAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTACTGTTGCAACCCT
390 TGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
15380604 TGGTCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
455 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
15380669 GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAG
520 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
*** * * * *
15380734 CCGAGGATCGGTTGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGGTT
585 CCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTT
* * *
15380799 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGAGCGGG
650 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
15380864 CCGGCACTACGT-CGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGG
715 CGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * *
15380928 TTTAGGCACATCTTCATATTTATGCCATTCCAATGCCATTTTTTTGG-TCTGTAAATTCATATAG
779 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT-TGTAAATTCATACAA
* *
15380992 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCATT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
** * * * * *
15381039 TTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTTGAGATTGTTTAAAATCTTTCCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * *
15381104 GTTTTGGCCCCAAACTCGGTAGACATGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
15381169 CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15381234 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTGTTGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * ** * *
15381299 GTTTGATGAGGGATAGGGGGCCAGTATAACGGCCAAAAACCAGCACACATCGCACATCTTGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
15381364 CACACCCCCCGGGCCCCCCCGATCGCCGGAACTCCAATGCCGCCGGTCAGTTTCTCCGGCGATGG
326 CACACCCCCC-GGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * * * *
15381429 TGT-CCTAGCGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCAGCCACAACCC
390 TGTCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** * * * *
15381493 TCGGTCTGGTCTGATCTTAGACTAAGAATGAACTCTGTATGCTTAGATTGGGAATGAACGCCCTA
454 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* **
15381558 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAA
519 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * ** ** ** * * * * **
15381623 ACCGGGGATTAACCGGGTCCCCCTCTATGTGCTGTTGATCTTGCTACCGTAACCCTTGATTTGGT
584 GCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGT
* * * * *
15381688 CCGATCTTAGATTGGAAATGAACTCCGTGTGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGG
649 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * *
15381753 GCAGGCACTACGCCGGCTAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
714 GCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
15381818 TTTAGGCACATCATCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
779 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
* *
15381883 GGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
844 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
15381929 TTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTAGAATTTTTTAAAATTTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* ** * *
15381994 TTTTTATCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAAATT
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCAC-AAAAAAATT
* * * *
15382059 TAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTATCCCCATTTCAAACA
128 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
15382124 CTTTAATGGCTACT-ACAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTT
193 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
15382188 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AGTACCAGCACGCATCGCACATCTTGT
258 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
15382252 GCGCACACCCCCCCGGCCCCCCCGATCATCGAAAACCCAATGCCACCGGTCAGGTTCTCCGACGA
323 GCGCACA-CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
** * * *** * *
15382317 TGGTGTCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGGATAGCATGTGCTGTCGCAAT
387 TGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
15382382 CCTCGGTTTGGTTCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
452 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
15382446 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGGGC
517 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * *
15382511 AAGCTGGGGATCGGCCGGGTCCTCCTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCGGTCCG
582 AAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCG
*
15382576 G-TCTGATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
647 GTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * * *
15382636 CAGGCGGGTACTACGT-CGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGAGTGGTAGG
711 CGGGCGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
15382700 TGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATA
775 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATA
15382765 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
840 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * *
15382815 CTCTATTTTTCATGGTTTTTGAAACTTTTTGCGGTTTGGGATTTTTTCAAATTTTTTCAAAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* ** * * *
15382880 TTTTTCTCCTCAAATTTGGTAGACGCGATCCTTGTATTTTTGTT-GCAATGCACAAAAAAATTCA
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCA
*
15382944 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCCGACACT
130 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * * *
15383009 TTAATTGCTACTTGCAGCAAACCCGTAAAATCTCACATCCTCTTAAAGGGGGTGTGAGTTCTCAA
195 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
15383074 GGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCACGTCC
260 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * ** *
15383139 GTACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCAGTAGGACAGGTTCTCCGGCGATG
325 GCACA-CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * ** *
15383204 GTGTTCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGTAACCC
389 GTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*** *
15383269 TCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTA
454 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * **
15383334 TTCCTAACTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGCGGAGGGATGCATAA
519 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * ** * * * * * **
15383399 CCCGGGGATCGATCAGGTCCATCTTTGCGTGGTGCCGATCCTACTGCCACAACCCTCGGTCC-AA
584 GCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGT
* *
15383463 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAACCAACCGACGAATCAAGCCGA-CGGGC
649 TC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A--AA--CGAGCGGGC
* * * * *
15383527 GGGCGGGCGGGCGCTGCACCGGCCAAAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
708 GGGCGGGCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
15383592 GGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCA
773 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCA
* *
15383657 TACAATGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATT
838 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
15383709 TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
** ** * * * * *
15383774 GTTTTAACCCCAAACTTATTAGACGAGATCCTTTTATTTTTGTTGGCATACATAAAAACATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15383839 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* **
15383904 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGATTTCTTAAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
15383968 GTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
15384033 CACACCCCCCAGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
326 CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
* * * * * *
15384098 GTCTCGACAAAAAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTC
391 GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
15384163 GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTTCGTATG
456 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15384228 CCTAAGTGAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGC
521 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
15384293 C-AGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCGGGTA
586 CGA-GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGT-
* * * *
15384357 T-GATCTTAGACTGGGAATGAACTCTGTATGACTAAGCCAACCGAC-AAA--A-CGAGCGGACGG
649 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
15384417 GCGGGCACTACGT-CGGCCAGAGAGGTGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGG
714 GCGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** *
15384481 GTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
778 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
*
15384546 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
15384593 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * * * *
15384658 GTTTTGACCCCAAACTTCGAACACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
15384723 CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATTCCCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *** *
15384788 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGCAATGTGAGTTCCCGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
15384853 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
*
15384918 CACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGT
326 CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
* * * * * * * *
15384982 GTCTCGACGAAGAAAAATGTGGCACCAGCACATGCTCGTGCCTAGCATGTGTTTCCGGAACCCTC
391 GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** * *
15385047 GGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCGTATG
456 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * **
15385112 CCTAAGTCAACACAAGAAATGAGTGTGCGGGCGCTTAGCCGGCTAGAGGGGCGGGATTTGCAAGC
521 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * ** *
15385177 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAGCCTTCAATCCAGTTC
586 CGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTTC
* * **
15385242 -ATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAATCGACGAAACGAGCGGGCGGTTGGG
651 GA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
15385306 TGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCCATAGGGTGGTAGGTGGGT
715 CGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15385371 TTAGGCACATCTTCATATTTCTACCATGCAAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
780 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
15385436 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
845 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
15385481 TTCTATTTTTCACGATTTTTGAAACTTTTAACGATTCGGGATTTTTGAAAATTTTTTCAGAAAGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
*
15385546 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TT-GCATGCACAAAGAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
15385609 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGCCCCCATTCCAAACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15385674 TAATGGCTACTGGTAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
15385739 GTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAACACCCATCGTACATCATGTGTG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
15385804 CACACCCCCCGGCCCCCCGTCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
326 CACACCCCCCGG-CCCCC-TCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * *
15385869 GTATCTCGACGAAGAAAAATACGGCACCAGCACAT-CCCTGAGCCCAGCATGTGTTGCCCCAACC
389 GTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACC
* * * * *
15385933 CTCGGT-TCGGTCTGATCTTAGACTAGGAATTAACTCCGTATGCTTAGACTGGGAATGAAGTCTG
453 CTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * * *
15385997 TGTACCTAGGTCAACACACGAAACGAACGTGCGGGCGTTCAGCCGACCAGAGGGGTGGGATGTGC
517 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * * * ** * *
15386062 AAGTCGAGGATCGGGCAGGACCCCCTCTGCATGCTACCGATCCTGCTACCATAGCCCTCGATCCG
582 AAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCG
* * * *
15386127 GTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGT
647 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * * *
15386192 GGTCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCTGTGGATCCATAGGGTGGTAGGTG
712 GGGCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
**
15386257 CATTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
777 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
*
15386322 ATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
842 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
15386370 TTCT-TTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * *
15386434 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAAAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
15386499 CTAAAAACTGGAAGCGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15386564 TATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCACGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
15386629 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
*
15386694 CACACCCCCCGGCCCCCTCGGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA---
326 CACACCCCCCGGCCCCCTC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * * *
15386753 --T------GAAGAAAAATACGGCACCAACACATGCCCGAGCCCAACATGTGCTACCGCAACCCT
390 TGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
** * * *
15386810 CGGTCTGGTCTAATCTTAGACTGGGAATGAGCTCCATATGCTTAGACT-GGAATGAACTTCGTAT
455 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
15386874 GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTTAGCCCGTCAGAGGGGCGAGATGCGCAAG
520 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
15386939 TCGAGGATCTATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGG-T
585 CCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTT
* *
15387003 CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAG
650 C-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * * *
15387068 GCGGGCACTACGT-CGCCCAAAGAGGCGAGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGA
714 GCGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
15387132 GCTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
778 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
*
15387197 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTTC-TT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-TCGTT
* ** ** * *
15387244 TTCTATTTTTTACGATTTTCAAAACTTTTTGGGGTTCGAGACTTTTTAAAATTTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
*
15387309 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
15387374 CTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15387439 TAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGGGTAAGTTCTCGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
15387504 GTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGTACCCACCGCACATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * **
15387569 CACACCCCCCGG-CCCCTCCGATCATCGGAACCCCAATGTCACCGGTCAGGTTCACCGATGATGG
326 CACACCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * * * *
15387633 TGT-CCGAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGTATGTGCAGCCGTAACCC
390 TGTCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
15387697 TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
454 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * ** * *
15387762 TGCCTAAGTCAACCTACGAAAGGAGCGAACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAA
519 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
15387827 GTCGAGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCCTACTACCACAACCCTCAGTCCGG-
584 GCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGT
* * * *
15387891 TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGAGCGGGCG
649 TC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * *
15387956 GGCGGGTACTACGCCGGCCATAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
713 GGCGGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** * *
15388021 GCTTAGGCACATCTTCAGATTTCTATCATGCCAATGCCATTGTTCTGGCTTGTAATTTCATACAA
778 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* *
15388086 TGGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACGACTCATT
843 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
** * * * * *
15388133 TTCTATTTTTCACGATTTTCAAAACATTTTATGGTTTGGGATTTTTGAAAAGTTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* *
15388198 TTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
15388263 CTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCACCATTTCAGACACTT
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
15388328 TAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
15388393 GTTTGATGAGGGATAGGGGACCAAGATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
15388458 CACACCCCCCGGCCCCCCTCGATCGTCAGAACCCCAATGCCGTCGGTTAAGTTCTCCGACGATGG
326 CACACCCCCCGG-CCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * * *
15388523 TGGCCCGATGAAGAAATATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
390 TGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
15388588 CGGTCTGGTCTGATCTTAGACTTGGAATGAAAC-CCGTATGCTTAGTCTGGGAATGAACTCCGTA
455 CGGTCTGGTCCGATCTTAGACTGGGAATG-AACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
15388652 TGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTTAGCGGGCCAGAGGGGTC-GGATGTGCA
519 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCA
* * * * *
15388716 AGTC-AGAGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCT-CCGCAACCCTCGGTCTG
583 AGCCGAG-GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCG
* * * * * * * *
15388779 GTCCAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGTGGGTGGGT
647 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
15388844 GGGCGGGCATTACGT-CGACCAGAGAGGCGGGATGCTCAAGCCGTGGATCAATAGGGTGGTAGGT
712 GGGCGGGCACTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
15388908 GGGTTTAGGCACATTTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
776 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
*
15388973 AATGGTCCCTTAAGCCTTCATGTGAACTTTCATGGCAAGACGACTCGTT
841 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
15389022 TTCTATTTTTCATGATTTTCAAAACTTTTGACGGTTTGGTATTTTTTAAAATTTTTTCAGAAGGA
1 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * *
15389087 GTTTTGGTCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15389152 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
131 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
15389196 TACGACACCA
Statistics
Matches: 9504, Mismatches: 1145, Indels: 270
0.87 0.10 0.02
Matches are distributed among these distances:
841 8 0.00
843 35 0.00
844 3 0.00
845 2 0.00
847 2 0.00
848 8 0.00
849 2 0.00
851 1 0.00
854 1 0.00
855 111 0.01
856 235 0.02
857 3 0.00
863 1 0.00
866 79 0.01
867 157 0.02
868 2 0.00
869 226 0.02
872 1 0.00
873 2 0.00
874 369 0.04
875 398 0.04
876 5 0.00
877 214 0.02
878 1 0.00
881 489 0.05
882 1 0.00
883 86 0.01
884 780 0.08
885 250 0.03
886 1307 0.14
887 105 0.01
888 513 0.05
889 1695 0.18
890 1296 0.14
891 160 0.02
892 413 0.04
893 166 0.02
894 375 0.04
895 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTTC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
Found at i:15382433 original size:25 final size:26
Alignment explanation
Indices: 15382399--15382450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15382389 TTGGTTCGAT
15382399 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15382424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15382450 C
1 C
15382451 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15383313 original size:26 final size:26
Alignment explanation
Indices: 15383284--15383333 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15383274 CCAATCCGAT
15383284 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
15383310 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15383334 TTCCTAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:15384212 original size:26 final size:26
Alignment explanation
Indices: 15384176--15384228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384166 CTGGTCTGAT
*
15384176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
15384202 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15384228 C
1 C
15384229 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15385097 original size:26 final size:26
Alignment explanation
Indices: 15385061--15385111 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15385051 CAGTTCGATC
15385061 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
15385087 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15385112 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:15387741 original size:26 final size:26
Alignment explanation
Indices: 15387712--15387764 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15387702 CTGGTCTGAT
*
15387712 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15387738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15387764 C
1 C
15387765 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15388640 original size:26 final size:26
Alignment explanation
Indices: 15388602--15388654 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15388592 CTGGTCTGAT
*
15388602 CTTAGACTTGGAATGAAAC-CCGTATG
1 CTTAGACTGGGAATG-AACTCCGTATG
*
15388628 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15388654 C
1 C
15388655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15391388 original size:26 final size:26
Alignment explanation
Indices: 15391352--15391404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15391342 CTGGTCTGAT
*
15391352 CTTACACTGGGAATGATCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
15391378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15391404 C
1 C
15391405 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15393047 original size:866 final size:862
Alignment explanation
Indices: 15391036--15393134 Score: 2549
Period size: 866 Copynumber: 2.4 Consensus size: 862
15391026 TGGCATGCCC
* * * * ** ** * *
15391036 ATTTTGTGTCCATTTGAAAAGAGTGTCCCCATTTCAGTCACTTTAAAGGCTACTGGTAGCAAACC
1 ATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATCGCTACTGGCAGCAAACT
* * * * **
15391101 TGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATACAGGGCC
66 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCC
* *** * * *
15391166 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACA-CCCCCCGGCCCCACCGA
131 AATATAAGGGCCAAGTACAAGCACCCACCACACATCATGTGCGCACACCCCCCCGACCCCCCCGA
* * * ** * * * * *
15391230 TCGCCGAAACCCCAATACCATCGGTCAGGTTCTCTGATGATGGTGT-CCTAGCGAAGAAAAATAC
196 TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTATCCCGA-CGAAGAAAAATAC
* ** *
15391294 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTACAC
260 GGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAA--CAC--TC--G---G----T-C-C
* *
15391359 TGGGAATGATCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
310 ---G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
15391424 AAGCGTGCGAGCGCTCAGCTGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCAGGTACCC
364 AAGCGTGCGAGCGCTAAGCCGGCCAAAGGGGCAGGATGCACAAACCGGGGATCGACCAGGTACCC
* * * * **
15391489 CTCTGTGTGCTATCGATCCTGCTGCCACAACCCTCTATCTGGTCTGATCTTAGACTGGGAATGAA
429 CTCTGCGTGCTATCGATCCTACTACCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAA
* * *
15391554 CTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAG
494 CTCCGTATGCCTAAGCCAACCGACAAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAAAG
* * *
15391619 AGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
559 AGGC--GATACGCAAGCCATGGATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
15391684 TACCATGACAATGCCATTTTTCTGGCTTGTATATTAATACAATGGTCCCTTATGCCTTCATGTGA
622 TACCATGACAATGCCATTTTTCTGGCCTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGA
* * *
15391749 ATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGA
687 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGA
* *
15391814 TTTTTTAAAATTTTTTTACAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
752 TTTTTTAAAATTTTTTCACAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
15391879 GTTGGCAAGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAG
817 ATTGGCAAGCACAAAATAATTAAGCTAAAAACTCGAAGTGTACAAG
* * * * *
15391925 ATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATCGCTACTGGCAGGAAACT
1 ATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATCGCTACTGGCAGCAAACT
*
15391990 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCC
* * * *** *
15392055 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATTGCCCTGA
131 AATATAAGGGCCAAGTACAAGCACCCACCACACATCATGTGCGCACACCCCCCCGACCCCCCCGA
* * ** *
15392120 TCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGATGATGGTATCCCGGTGAAGAAAAATGCG
196 TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTATCCCGACGAAGAAAAATACG
* * * *
15392185 GCACCAGCGCATTCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACT
261 GCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGTCCGGTCCAATCTTAGACT
* **
15392250 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATTAGCGTGCGAGCGCTAAGCCGGCCAAA
326 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTAAGCCGGCCAAA
** * * * * *
15392315 GGGGCAGGATGTGCAAACCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCG
391 GGGGCAGGATGCACAAACCGGGGATCGACCAGGTACCCCTCTGCGTGCTATCGATCCTACTACCA
* * *
15392380 CAACCTTCGGTTTGGTCCAATCTT-GTACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
456 CAACCCTCGATCTGGTCCAATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
* * * *
15392444 AACGAACGGGTGGGCGGGTGGGTGGGCACTACG-CAGGCCAAAGAGGC-ACTACGCAAGCCGTGG
520 AAC-AA---GCGGGCGGGCGGGCGGGCACTACGTC-GGCCAAAGAGGCGA-TACGCAAGCCATGG
* * * *
15392507 TTCGATAAGGTGGCAGTTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC
579 ATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGACAATGCCATTTTTC
* * * *
15392572 TTGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGGAGTTTCATGGCAAGACAACTCG
644 TGGCCTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCG
* * * *
15392637 TTTTCTATTTTTCATGATTTTAAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
709 TTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCACAAG
* * *
15392702 TACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGTATGCACAAAA-ACATT
774 GACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCAAGCACAAAATA-ATT
*
15392766 AAGCTAAAAACTTGAAGTGTACAAG
838 AAGCTAAAAACTCGAAGTGTACAAG
* *
15392791 ATTTTGAGACCATTTGAAAAGAGTATCCCCATTTCAAACACTTT-ATAGGCTACTGGCAGCAAAC
1 ATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAAT-CGCTACTGGCAGCAAAC
*
15392855 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATA-GGGGC
65 TTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGC
* *
15392919 CAATATAAGGGCCAAGTACAAGCACCCACCACACATCATGTGCGTACACCCCCCTCGGCCCCCCC
130 CAATATAAGGGCCAAGTACAAGCACCCACCACACATCATGTGCGCACACCCCCC-CGACCCCCCC
* * * * *
15392984 GATCGTCGGAACCCCAATGCTGCCAGTTAGGTTCTTCGACGATGGTGTCCTGACGAAGAAAAATA
194 GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTATCCCGACGAAGAAAAATA
* * * * *
15393049 CGGCACCAGCACATGCCCTAGCCCAGCATGTGCTATCGCAACACTCGGTCTGGTTCGATCTTAGA
259 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGTCCGGTCCAATCTTAGA
15393114 CTGGGAATGAACTCCGTATGC
324 CTGGGAATGAACTCCGTATGC
15393135 TTAGACTGGG
Statistics
Matches: 1058, Mismatches: 140, Indels: 47
0.85 0.11 0.04
Matches are distributed among these distances:
863 1 0.00
864 174 0.16
865 63 0.06
866 516 0.49
867 1 0.00
868 32 0.03
869 1 0.00
872 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
881 1 0.00
884 1 0.00
886 2 0.00
888 2 0.00
889 161 0.15
890 97 0.09
891 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
ATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATCGCTACTGGCAGCAAACT
TGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACAAGCACCCACCACACATCATGTGCGCACACCCCCCCGACCCCCCCGA
TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTATCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGTCCGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTAAGCCGGCCAAA
GGGGCAGGATGCACAAACCGGGGATCGACCAGGTACCCCTCTGCGTGCTATCGATCCTACTACCA
CAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
ACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAAAGAGGCGATACGCAAGCCATGGATCGATA
AGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGACAATGCCATTTTTCTGGCCTG
TAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA
TTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCACAAGGACTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCAAGCACAAAATAATTAAGCTAAA
AACTCGAAGTGTACAAG
Found at i:15393144 original size:26 final size:26
Alignment explanation
Indices: 15393108--15393160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15393098 CTGGTTCGAT
15393108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15393134 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15393160 C
1 C
15393161 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15393423 original size:159 final size:159
Alignment explanation
Indices: 15393134--15393509 Score: 475
Period size: 159 Copynumber: 2.4 Consensus size: 159
15393124 ACTCCGTATG
* *
15393134 CTTAGACTGGGAATGAACTCTGTATGCCTAAGACAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
15393199 TGGCCAGAAGGGGGGGATGCGCAAGCCGAGAATCGATCGGGTCCCCTTCTACGTGCTACTAATCC
66 TGGCCAGAAGGGCAGGATGCGCAAGCCAAGAATCAATCGGGTCCCCCTCTACGTGCTACCAATCC
* * * *
15393264 TGCTGCCGCAACCTTCGGCACGATCCGAT
131 TGCTACCGCAACCGTCAGCACGATCCAAT
* * * * * *
15393293 CTTAGGCTGGGAACGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
15393358 TGGCCAG-AGGGTCAGGATGCGCAAGTCAAGGATCAATCGGGTCCCCCTCTACGTGCTACCGATC
66 TGGCCAGAAGGG-CAGGATGCGCAAGCCAAGAATCAATCGGGTCCCCCTCTACGTGCTACCAATC
* * *
15393422 CTGCTATCGCAACCGTCAGCCCGGTCCAAT
130 CTGCTACCGCAACCGTCAGCACGATCCAAT
* * * * *
15393452 CTTAGACTAGGAATGAACTCCGTATTCCTAAGCCAACCGATGAAACGAGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGC
15393510 CAACGGGCAC
Statistics
Matches: 182, Mismatches: 34, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
158 4 0.02
159 178 0.98
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGC
TGGCCAGAAGGGCAGGATGCGCAAGCCAAGAATCAATCGGGTCCCCCTCTACGTGCTACCAATCC
TGCTACCGCAACCGTCAGCACGATCCAAT
Found at i:15395208 original size:159 final size:158
Alignment explanation
Indices: 15394916--15395291 Score: 427
Period size: 159 Copynumber: 2.4 Consensus size: 158
15394906 GCAACCCTTT
*
15394916 GTCTGGT-TCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCAT
1 GTCTGGTCT-GATCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACGAAATGAGCAT
* * * *
15394980 ACGGGCATTCAGCCACCCAGAGGAGCAGGATGCGCAAGCCGGGGATCAGTCGGGTTCCTCTCTGG
64 ACGGGCACTCAGCCACCCAGAGGAGCAGGATGCACAAGCCGGGGATCAATCGGGTTCCTCTCTGC
* * *
15395045 GTGCTACCGATCCTGCCACCGTAACACTCG
129 GTGCTACCAATCCTACCACCGCAACACTCG
* * *
15395075 GTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAATGAGCGTG
1 GTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAAC-CACGAAATGAGCATA
* * **** * *
15395140 CGGTCGCTCAGTTGGCCAGAGG-GTCGGGATGCACAAGTCGGGGATCAATCGGG-TCCTCCTCTG
65 CGGGCACTCAGCCACCCAGAGGAG-CAGGATGCACAAGCCGGGGATCAATCGGGTTCCT-CTCTG
** *
15395203 CGTGCTACCAATCCTACTGCCGCAACCCTCG
128 CGTGCTACCAATCCTACCACCGCAACACTCG
* * * *
15395234 GT-TCGGTCCGATCTTACACTAGGAATTAACTCTGTATGCCTAAGCCAACCGACGAAAT
1 GTCT-GGTCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACC-ACGAAAT
15395292 TAGTGGGCGA
Statistics
Matches: 184, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
158 8 0.04
159 175 0.95
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (158 bp):
GTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCACGAAATGAGCATAC
GGGCACTCAGCCACCCAGAGGAGCAGGATGCACAAGCCGGGGATCAATCGGGTTCCTCTCTGCGT
GCTACCAATCCTACCACCGCAACACTCG
Found at i:15396842 original size:26 final size:26
Alignment explanation
Indices: 15396806--15396855 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15396796 ATCCGATCTG
* *
15396806 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
15396832 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
15396856 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:15397743 original size:26 final size:26
Alignment explanation
Indices: 15397691--15397743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15397681 CCGATCCGAT
* *
15397691 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15397717 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
15397743 C
1 C
15397744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15400009 original size:861 final size:862
Alignment explanation
Indices: 15393285--15401758 Score: 8578
Period size: 888 Copynumber: 9.7 Consensus size: 862
15393275 CCTTCGGCAC
* * * * * *
15393285 GATCCGATCTTAGGCTGGGAACGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGT
1 GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * ** ** *
15393350 CGCTCAGCTGGCCAGAGGGTCAGGATGCGCAAGTCAAGGATCAATCGGGTCCCCCTCTACGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * * * *
15393415 ACCGATCCTGCTATCGCAACCGTCAGCCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATTCC
131 ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *** * *
15393480 TAAGCCAACCGATGAAACGAGCGGGCGGGCCAACGGGCACTGCGCCGGCCAAAGAGGCGGGATGC
196 TAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * *
15393545 GCAAGCCGTGGTTTGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
15393610 TGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGC
326 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
*
15393675 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
391 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * * *
15393740 TTTTTCAAAAGCACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGTATGCA
456 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
15393805 CAAAAGCATTAAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACTATTTGAAAAAAGT-ACCCT
521 CAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-
* * *
15393869 CATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
585 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
**
15393934 TGTGAGTTCTCGAGGTTAAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
650 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** ** *
15393999 ACACATCATGTGC-GCACAGCCCCCCCGGCCACCCCCGATCACCGGAACCCCAATGCCACCGATC
715 GCACATCATGTGCTGCACA-CCCCCCCGG-C-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
* * * *
15394063 AGGTTCTCC-GATGATGGTGTCCCAAGGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGT
777 AGGTTCTCCGGA--ATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
15394127 ATGTGCTGCCGCAACCCTCGGTCCGA
840 ATGTGCT--CGCAACCCTCGGTCC-A
*
15394153 TCCGATCTTAGACTGGGAAAGAACTCTGTAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
1 ---GATC-----C--------AA-----T--CTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * ** * * *
15394218 AATCCACAAAACGAGCATGCGGGCACTCAACCGGCCAGAGGGGC-CAACTGCGTAGGTCGGGGAT
43 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGAT
* * * ** * *
15394282 CGATCGAGTCCCCTTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTTTGATCCGATCTTA
107 CGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTA
** * * * *
15394347 -ATCTGGGAAAAAACTCTGTTTGCCTAAGCCAACCGACAAAACGAGTGGGCGGGCGGGCGGGCAC
172 GA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCAC
* * * *
15394411 TACTCCGGTCAGAGAGGCAGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCA
236 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** *
15394476 CATCTTAATATTTCTGCCGCGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTT
301 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* * * * *
15394541 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCATGA--CTCG-AAGTG
366 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
** * * * * *** * * * *
15394603 TACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCGTTTCA-AA-CACTTTAATGG---C-TAC
431 TTTACG-GTTCG-G--GATTTTTTAAAA-T-T----TTTTCAGAAGGAGTTT--TGGCCCCAAAC
* * *** * *** * *** **** * * *** *
15394662 -TGGTAG-C--AAACC-TGTA-AAAT-CTCAAATGCTC--TTTCAGGGGGTGTGAGTTCTCGAGG
484 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAG-CTAAAAACTCGAAG
* ** * ** * * * ** * *
15394718 TTTGATGAGGTATAGGGGGCCAATAT-AAGGGCCAAGTACCAG-CACCCA--TC-G-CAC-ATCA
548 TGT-ACAAGAT-TTTGTGACC-ATTTGAA---AAAAGT----GTC-CCCATTTCAGACACTTTAA
* *** ** ** **** ** * * * *** ** *
15394776 TGTGCACACACCCCCCCGACCCCTGCCCGATCGTTGGAA-CCCCAATGCCGCCGGT-T-AGGTTT
602 TG-GC-TAC-TGGCAGC-AAACCTGTAAAATC--TCAAATGCTC-TTTAAGGGGGTGTGA-GTTC
* ** * ** * * * * * * *
15394838 TCCA-G--TGAT-AGTGTCTCGATGAAG-AAAAAT-ACGGCACCAGCA-CATGC-CCGA--GCCC
659 TCGAGGTTTGATGAG-GGAT--AGGGGGCCAATATAAGGGC-CAAGTACCA-GCACCCATCGCAC
* * * *** * **** * ***
15394893 AACATGTGCTGTCGCAACCCTTTGTCTGGTTCGATCTTACACTGGGAATGAACTCTGTATGCCTA
719 ATCATGTGCTG-CACACCCCCCCGGC-CCCCCGATCGT---C---G---GAAC-CCCAATGCC--
*** ** * * * *** * * **
15394958 AGTCAACCCACGAAACGAGCATACGGGCATTCAGCCACCCAGA-GGAGCAGGATGC-GCAAGCCG
770 -GTC-GGTCA-G----GTTC-T-CCGG-AAT-GGTGTCCC-GACGAAGAAAAATGCGGC-A-CC-
* * * * * * * * * * *
15395021 GGGATCAGTCGGGTTCCTCTCTGGGTGCTACCGATCCTGCCACCGTAACACTCGGT-CT
820 AGCA-CA-T---G---C-C-C-GAG-CCCAGC-AT-GTG-C-TCGCAACCCTCGGTCCA
* ** * * * * *
15395079 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAATGAGCGTGCGGT
1 GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * * ** *
15395144 CGCTCAGTTGGCCAGAGGGTCGGGATGCACAAGTCGGGGATCAATCGGGTCCTCCTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * * * * * * *
15395209 ACCAATCCTACTGCCGCAACCCTCGGTTCGGTCCGATCTTACACTAGGAATTAACTCTGTATGCC
131 ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
** ** * **
15395274 TAAGCCAACCGACGAAATTAGTGGGC-GAGCCAGCGGGCACTGCATCGGCCAGAGAGGCGGGATG
196 TAAGCCAACCGACGAAACGAGTGGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * *
15395338 CGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
* * * * *
15395403 ATTCCATTTTTTTGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCATGTCAAGTTTCTTGG
325 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* *
15395468 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAA
390 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * * *
15395533 TTTTTTCAAAAGGACTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTGTTTTTGTTGGAATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
15395598 ACAAAAACATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCT
520 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
15395663 CATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
585 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
** *
15395728 TGTGAGTTCTCGAGGTTTGATGACCGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
650 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
15395793 GCACATCATGTGC-GTACA---------CACCCCGATCGTCGGAACCCTAATACCGTCGGTAAGA
715 GCACATCATGTGCTGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
** * * *
15395848 TTCT-TTGACGATGGTGTCCCGACGTAGAAAAATGCGGCACCAGCACATGCCTGAACCCAGCATG
780 TTCTCCGGA--ATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
15395912 TGCTGCAGCAACCCTCGGTCC-
843 TGCT-C-GCAACCCTCGGTCCA
* * * * *
15395933 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGG
1 GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
15395998 CGTTCAACTGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* ** * * * * ** * * *
15396063 ACCGATCTTGCTGTCGCAACCCTTGATCTGATCTGATCTTAGACTGAGAATAAACTCCATATGCC
131 ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* *
15396128 TAAGCCAACCGACGAAACGAGTGAGCAGG-CGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATG
196 TAAGCCAACCGACGAAACGAGTGGGC-GGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * *
15396192 CGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCGTGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
*** * *
15396257 ATGCCATTTTTCTGGCTTGTAAAAAAATACAATTGTCCCTTAAGCCTTCATCTGAAGTTTCATGG
325 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * **
15396322 CAAGGCGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCAAGATTTTTTAAAA
390 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
15396387 -TTTTTCAGAAGGAGTTTTGGCCCCAAACTTAGTAGACTTGATCCTTGTATTTTTGTTGGCATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
15396451 ACACAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTC
520 ACA-AAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
15396515 CTATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG
584 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
15396580 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
649 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
15396645 CGCACATCATGTGC-GCACACCCCCCCGGCCCCCCAATCGTCGGAGCCCCTATGTCGCCTGTCAG
714 CGCACATCATGTGCTGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* *
15396709 GTTCTCC-GACGATGGTGTCCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
779 GTTCTCCGGA--ATGGTGTCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
15396772 TGTGCTGTCACAACCCTCGATCCGATCCGATCTGAGA
841 TGTGC--TCGCAACCCTCG----G-T-C---C----A
* *
15396809 CTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 ----G-AT---C--C-AAT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
15396874 CGAGCGTGGGGGGGCTCAGCCGGCCAGAGAGACGGGATGCACAAGCCGAGGATCGGCCGGGTCCC
54 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
** * *
15396939 CCGT-AACGTGCTACCGATCCTGCTACCACAGCCCTCGGTCCGGTCCAATCTTAGACTGGGAATG
119 CC-TCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATG
* *
15397003 AACTCCGTATGCCTAAGCCAACCGACGAAACGGAG-GGGCGGGCAGGCGGGCACTACGCCGGCCA
183 AACTCCGTATGCCTAAGCCAACCGACGAAAC-GAGTGGGCGGACGGGCGGGCACTACGCCGGCCA
* *
15397067 GAGAGACGGGATGCGCTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
247 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
15397132 TTCTGCTGTGCCAATGCCATTTTTCTGG-TTGTAAATTCATACAATGGTCCATTAAGCCTTCATG
312 TTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * **
15397196 CGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTAA
377 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * *
15397261 GGATATGTTAAAATTTTTTCAGAAGGAGTTTAGGCCCCAAACTTGGTAGACATGATCCTTGTATT
442 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
15397326 TATGTTGGAATTCATAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG
507 TTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* ** * *
15397391 AAAAAAGTGTCCCCA-TTCTAGATACTTTAATGGCTACTTTCTGCAAACCTGTAAAATGTCAAAT
572 AAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
15397455 GCTCTTGAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAG
636 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
15397520 TACCAGCACCCATTGCACATCATGTG-TGCACA-CCCCCCGGCCCTCCCGATCGTCGGAACCCTA
701 TACCAGCACCCATCGCACATCATGTGCTGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCA
* **
15397583 ATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATATGGCACCAGCACATGC
765 ATGCCGTCGGTCAGGTTCTCCGG-AATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGC
*
15397648 CCGAGCCCAGCATGTGCTACCGCAATCCTCGGTCCGA
829 CCGAGCCCAGCATGTGCT--CGCAACCCTCGGTCC-A
* *
15397685 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGT
1 ---GATC-----C---------A------AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
15397750 CAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCATAGGGGCGGGTTGCGTAAGTCAGGGAT
42 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** * * ** *
15397815 CGGTCGGGTCCCCCTCTGCG-GCTGCCGATCCTGCTGTCGCAACTCTTGGTCCAATCCGATCTTA
107 CGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTA
* ** * * *
15397879 GACTGGGAATGAACTCCGTATGCCTATGCCAATTGACGAAACGAGCGGGCGGGCGGGCGGGCACC
172 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCACT
* * *
15397944 ACCCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
237 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* ** **
15398009 ATCTTCATATTTTTTTCATGCCAATGCCATTTTTCTTTCTTGTAAATTCATACAATGGTCCCTTA
302 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
* * ** **
15398074 AGACTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAAAGTT
367 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * * *
15398139 TTACGGTTCGGGAATTTTTGAAATTGTTTT-ACAAGGATTTTTGGACCCAAACTTGGTAGACGTG
432 TTACGGTTCGGGATTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
15398203 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
496 ATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
15398268 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAA
561 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
15398333 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATAT
626 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
15398398 AAGGGACAAGTGCCAGCACCCATCGCACATCATGTAC-GCACA-CCCCCCGGCCCCCCGATCGCC
691 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTGCACACCCCCCCGGCCCCCCGATCGTC
* * * *
15398461 GGAACCCCAATGCCGTCGGTTAGGTTCT-CTGACGATGGTGTCCCGACGAAGAAAAATACGGCAA
756 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGA--ATGGTGTCCCGACGAAGAAAAATGCGGCAC
* * *
15398525 CAGCACATGCCGGTGCCCAGCATGTGCTGCCGCAACCCTCGGTCTA
819 CAGCACATGCCCGAGCCCAGCATGTGCT--CGCAACCCTCGGTCCA
** * *
15398571 G-TCTGATCTTAGACTGGGAATGAACTCTC-TATGCCTACA-TCAACCCACGAAACGAGCGTACG
1 GATCCAATCTTAGACTAGGAATGAACTC-CGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCG
* * * * * * **
15398633 GGTGCTCAACCGGCTAGAGGGGCGGGATACGCAAGTCGGGGGTCGGTCGGGTCCCTATCTGCGTG
64 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * *
15398698 CTACCGATCCTGCTATCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
129 CTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
15398763 CCTAAGCCAACTGATGAAACGAGCGGGCGGACTGGCGGGCACTACGTCAGCCAGAGAGACGGGAT
194 CCTAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * * ** *
15398828 GTGTAAGCTGTGGATCGATAATGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCC
259 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* *** * *
15398893 AATGCAATTTTTCTGGCTTGTAAAAAAATACAATGATCCCTTTAAGCCTTCATGTGAAGTTTTAT
324 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAAGTTTCAT
** *
15398958 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAA
388 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
15399023 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
453 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
15399088 GCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTCGAAAAAAGTGTC
518 GCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
15399153 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
583 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
15399218 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCA
648 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * **
15399283 TCACACATCATGTGCGGACAAACCCTCCCCGGCCCCCCCATAGTCGAAACCCCAATATCGTCGGT
713 TCGCACATCATGTGCTG-CACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* * * *
15399348 CAGGTTCTCCAGTAATGGTGTCCCGACGAAGAAAAATGCGACACCAGCAAATTCCCGAGCCCAGC
776 CAGGTTCTCC-GGAATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
15399413 ATGTGCT-G-AACCCTCGGTCCA
840 ATGTGCTCGCAACCCTCGGTCCA
* * * *
15399434 G-TCCCATATTCGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-GTGTGGG
1 GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
15399497 CGTTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
** * ** *
15399562 GTCGATCCTGCTACCGGAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCC
131 ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * *
15399627 TAAGGCAATGGACGGAACGAGTGGGCGGACGTGCGGCCACTACGCCGGCCAGAGAGGCGGGGTGC
196 TAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * *
15399692 ACAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
15399757 TGCCATTTTTCTGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCTTGTGAAGTTTCATGGC
326 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* *
15399822 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAT
391 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
15399887 TTTTTTAGAAGGAGTTTTGGCCCCTAACTTGGTAGACGGGATCCTTGTATTTTTGTTGGCATGCA
456 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
15399952 CAAAAACATTCAGCTAAAAATTCGAAGTGTACAAGATTTTTTGACCATTGGAAAAAAGTGTCCTC
521 CAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
15400017 ATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
586 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
15400082 GTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
651 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
15400147 CACATCATGTG-TGCACACCCCCCCGACCCCACCGAACGTCGAAACCCCAATGCCGTCGGTCAGG
716 CACATCATGTGCTGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * *
15400211 TTCTCCGGCGACGGTGTCCCGGCGAAGAAAAATGCAGCACCAGCACATCCCCGAGCCCAGCATGT
780 TTCTCCGG-AATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
15400276 GCGATCGCAACCCTCGGTCTGGTCTGATCTTGACTGGGAA
844 GC--TCGCAA-CC-C--TC--G---G-TC----C-----A
* * * *
15400316 TGAACTCCGTATGCTTAGACTAGGAATGGACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT
1 -G-A-TCC-AAT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
15400381 TCGGGCGCTCAGCCGGCCAGAAGGGTGGGATG-GCAAGCCGAGGATTGATCGGGTCCCCTTCTAC
61 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
** * * * *
15400445 GTGCTGTCGATCCTGCTGCCGCAACCCTTGGGCAGGTCCAATCTTAGACTGGGAATGAACTCCGT
126 GTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
* *
15400510 ATGCCTAAGCCAACCGACGTAACGAGTGGGC-GAGCGGGCGGGCACTACGCCAGCCAGAGAGGCG
191 ATGCCTAAGCCAACCGACGAAACGAGTGGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGGCG
** * * *
15400574 GGATATGCAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGCCA
255 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
15400639 TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTGTGAAGTTT
320 TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
15400704 CATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGTTCGGCATTTTT
385 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * *
15400769 GAAAATTTTTTCAGAAGGAGTTTTGACCCCAAAGTTGATAGACGTGATCCTTGTATTTTTGTTGG
450 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
15400834 CATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAACT
515 CATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
15400899 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
580 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
15400964 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGAGCCAAGTACCAGCAC
645 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
15401029 CCATCGCACATCATGTG-TGCACACCCCCTCAGCCCCGCTCGATCGTCGGAACCCCAATACCGCC
710 CCATCGCACATCATGTGCTGCACACCCCCCCGGCCCC-C-CGATCGTCGGAACCCCAATGCCGTC
* * *
15401093 GGTTAGGTTTTCCGGCAATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
773 GGTCAGGTTCTCCGG-AATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
15401158 AGCATGTGCTATTGTAACCCTCGGTCC-
837 AGCATGTGC--TCGCAACCCTCGGTCCA
* * *
15401185 GATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCGGG
1 GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
15401250 CGCTCAGCCGGCCAGAGGGTCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCTCCTCTGCGTGTT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * ** *
15401315 GCCGATCTTGCTACCGCAACCCTCGGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
131 ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
15401380 TAAGCCAACCGACAAAACGAGCGGGCAGG-CGGGCGGGCACTACGTCGGCCAGAGATGAGGGATG
196 TAAGCCAACCGACGAAACGAGTGGGC-GGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * * *** * *
15401444 CGCAAGCCATGGATCGATAGGGTAGTAGGTTGGTTTACATACATCTTCATATTTTTTCCATGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
* * *
15401509 ATGCCATTTTTTTGGCTTTTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGG
325 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * *
15401574 CAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTTAAA
390 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
*
15401638 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
15401703 ACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGCGACAATTTGAAAA
520 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
15401759 GCAACACTCA
Statistics
Matches: 6311, Mismatches: 1008, Indels: 575
0.80 0.13 0.07
Matches are distributed among these distances:
853 255 0.04
854 406 0.06
855 3 0.00
856 4 0.00
857 1 0.00
858 10 0.00
859 92 0.01
860 2 0.00
861 450 0.07
862 559 0.09
863 399 0.06
864 202 0.03
865 310 0.05
866 7 0.00
867 98 0.02
868 5 0.00
869 7 0.00
870 14 0.00
871 9 0.00
872 2 0.00
873 3 0.00
874 3 0.00
875 3 0.00
876 3 0.00
877 2 0.00
878 1 0.00
879 6 0.00
880 2 0.00
881 1 0.00
882 9 0.00
883 8 0.00
884 3 0.00
885 5 0.00
886 22 0.00
887 424 0.07
888 1727 0.27
889 147 0.02
890 24 0.00
891 367 0.06
892 33 0.01
893 23 0.00
894 15 0.00
895 13 0.00
896 25 0.00
897 4 0.00
898 21 0.00
899 17 0.00
900 22 0.00
901 21 0.00
902 28 0.00
903 364 0.06
904 22 0.00
905 13 0.00
906 13 0.00
907 11 0.00
908 10 0.00
909 5 0.00
910 2 0.00
911 4 0.00
912 14 0.00
913 4 0.00
914 2 0.00
915 2 0.00
916 1 0.00
919 1 0.00
922 1 0.00
923 4 0.00
924 1 0.00
925 1 0.00
926 2 0.00
927 3 0.00
928 13 0.00
929 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (862 bp):
GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
ACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCTGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
TCTCCGGAATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TCGCAACCCTCGGTCCA
Found at i:15403563 original size:26 final size:26
Alignment explanation
Indices: 15403533--15403582 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15403523 GTATGATCTG
*
15403533 AGACTAGGAATGAACTCCGTATGCTT
1 AGACTAGGAACGAACTCCGTATGCTT
*
15403559 AGACTGGGAACGAACTCCGTATGC
1 AGACTAGGAACGAACTCCGTATGC
15403583 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTAGGAACGAACTCCGTATGCTT
Found at i:15404661 original size:886 final size:885
Alignment explanation
Indices: 15401759--15406992 Score: 6815
Period size: 889 Copynumber: 5.9 Consensus size: 885
15401749 AATTTGAAAA
* * * *
15401759 GCAACACTCAGT-TCGATCTGATCTTCGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGA
1 GCAACCCTCAGTGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
15401823 ACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAGGGGCGTG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * * * ** *
15401888 ATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGCGCTGTTGATCCTGCTATCGTAACCCTC
131 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
* * * *
15401953 GGTCCGGTCAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-G
196 GGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*
15402017 GGCGGGCGAGCGCTCATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
261 GGCGGGCG-G-G--CACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
15402082 GTAGGTGGCTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAAT
321 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTAAAT
* * * *
15402147 TCATACAATGGTCCCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCATATCCTATTTTT
386 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * *
15402212 CAGGATTTTCAAAACTTTTTACGGTTTGGGATTGTTTAAAATCTTTTCAGAAGGAGTTTTGGCCC
451 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * * * *
15402277 CAACCTTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTT
516 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
15402342 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC
581 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15402407 AGGCAGCAAACCTGTAAAATCT-ATAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
646 TGGCAGCAAACCTGTAAAATCTCA-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * *
15402471 GGGGTAGGGGGCCAATATAAGGGACAAGTACCAGTAACCATCACACATCATGTGCGCACACCCCC
710 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
15402536 CCGGCCCCTCCGATCGCCGAAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGGCGTTTCGA-
775 CC-GCCCCT-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTG-TCCGAG
* * * *
15402600 TGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
837 CGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
15402649 GCAA-CC-C----TCGGTCTGATC-----C--------AA-T-C-----C-TAGACTGGGAATGA
1 GCAACCCTCAGTGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
15402687 ACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTAAGCCGGCC-AGGGGGTGGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * ** *
15402751 ATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCAG-AACCCT
131 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC-GCAACCCT
* ** * * *
15402815 CAGTCC-GATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGC
195 CGGTCCAG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
15402879 GGGCGGACGGGCGGGCACTACGCTGCCAGAGAGGCGGGATGCGTAAGCCGAGGATCAATAGGGTG
259 -GG-GG-CGGGCGGGCACTACTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
15402944 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATTCCATTTTTCTGGCTTGTAAAT
321 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTAAAT
15403009 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
386 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * *
15403074 TACAATTTTCAAAACGTTTTACGGTTCAGGATTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCC
451 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* **
15403139 CAAACTTGGTAGACGTGATCCTGGTATTTTTTTTTTCATGCACAAAAAAATTCAGCTAAAAACTC
516 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
15403204 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
581 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15403269 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAG
646 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
15403334 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCTCC
711 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC
* * * * * *
15403399 CCGGCCCCCCGATCGTCGGATCCCCAATGCCGTCGGTTAGGTTCTTCGGCGATGGTGTCCCGA-C
775 CC-GCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGT-CCGAGC
* * * **
15403463 GAAGAGAAATACAGCACCAGCACATGCCTGAGCCTAGCACATGCT---
838 GAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
15403508 GCAA-CC-C-GTGGTCTGGTATGATCTGAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAC
1 GCAACCCTCAGT-GTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* ** ** *
15403570 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTATGGGTACTCAGTCGGCCAGAA-GGGC
64 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AAGGGGC
* * * * *
15403634 GGGATGCGCAATCCAGGGATCGGTCGGGT-CCCCTCTGCGTGCTGTGGATCCTGTTGCCACAACC
128 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
* * * *
15403698 CTCGATGCAGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
193 CTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
15403763 CGGGCAGGCGGGCGAGCACTACTCCGGCCAGAGAGGCGGGATGCGCAAACCGTGGATCGATAGGG
258 C-GG--GGCGGGCGGGCACTACT-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
15403828 TGGTAGGTGGGTATAGGCACCTCTTCATATTTTTGCCATGCCAATGCCA-TTTTCTTGGCTTGTA
319 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTC-TGGCTTGTA
* *
15403892 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCAATT
383 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
*
15403957 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGG
448 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** ** * *
15404022 CCCCAAACTTAATAGATATGATCCTTGTATTTTTTTTTGCATGCACAAAAAAATTTAGCTAAAAA
513 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
15404087 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
578 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
15404152 TACTGGCAGCAAACCTATAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGAT
643 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
15404217 GAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
708 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
15404282 CCCCGACCCCTTCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCC-AGCGATGGTGTCTC
773 CCCCG-CCCC-TCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGGTGTC-C
* *** *
15404346 GA-CAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGCC
834 GAGCGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
15404397 GCAACACTCAGT-TCGATCTGATCTTCA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
1 GCAACCCTCAGTGTCGGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
15404460 AACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGGCGT
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGG
* * * * ** *
15404525 GATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTTGATCCTGCTATCGTAACCCT
130 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * *
15404590 TGGTCCAGTCAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-
195 CGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
*
15404654 GGGCGGGCGAGTGCGCATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
260 GGGCGGGC--G-G-GCACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
15404719 GATAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACTATTTTTTTGGCTTGTAAA
320 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTAAA
* *
15404784 TTCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTT
385 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
15404849 TCACAATTATTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
450 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * * *
15404914 CCAAA-TTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCCGCTAGAAACT
515 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
15404978 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
580 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
15405043 CTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
645 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
15405108 GGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-----
710 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
15405168 -C-CCCC-CG---GT---AA--CC----CC-CCGGTCAGGTTCTCCGATGATGCTATCCTAGCGA
775 CCGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCGAGCGA
* *
15405217 GGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATCTGCTGCC
840 AGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
15405263 GCAACCCTCGGTCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGA
1 GCAACCCTCAG--T-GT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * **
15405328 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGGCTAGTGGGG
62 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGG
* * * * * * *
15405393 CGGGTTGC-AAAGCCGGGGATCGATCGGGTCTCCCTCTGCGTGCTGTCGATCCTACTACTGCAAC
127 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* ** *
15405457 CCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGA
192 CCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
15405522 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGAATCGATAGG
257 GC--G-GGGCGGGCGGGCACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * * * * * *
15405587 GCGGTAGGTGGGTTTTGGCACATCGTCAAATTTTTGCCATGCCACTACCATTTTTCTGCCTTGTA
318 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTA
*
15405652 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATT
383 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
15405717 TTTCATGATTTTTGAAACTTTTTATGGCTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGA
448 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
*
15405782 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAA
513 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15405847 ATCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
578 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
15405912 TACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
643 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
15405977 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATATGCGCACACCC
708 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
15406042 CCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCCCAG
773 CCCCGCCCCTC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCGAG
* * * **
15406107 CGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGTT
837 CGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * **
15406156 GCAACCCTCAGT-CCGGTCCGATCATAGAATGGGGATGAACTTTGTATGCTT-GCACTGGGAATG
1 GCAACCCTCAGTGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACTGGGAATG
* * * *
15406219 AACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAG
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGG
* * * * *
15406284 GATGCGCAAGCTGGGG-TCGGCCGGGTCCCCCTCTGCATGCTGTCTATCCTGTTGCCGCAACCCT
130 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* * *
15406348 CGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGTCTCAA-CCAATCGACGAAACGAGC
195 CGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGC
* *
15406412 GGGTGATCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGCATCGATAGGGT
259 GGG-G--CGGGCGGGCACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
15406477 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAA
320 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTAAA
* * *
15406542 TTCAGACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
385 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
15406607 TCACGATTTTTGAAACTTTTTACGGTTTGGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
450 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * **
15406672 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATGCAAATAAAAACC
515 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA-C
*
15406737 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCT
579 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
15406802 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATG
644 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * *
15406867 AGGGATAGGGGACCAATATAAAGGCCAAGTACTAGCACCCATCGTACATCATGTGCACTTCACCC
709 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-ACACCC
* * * * * * *
15406932 CCGTC-CCCCTCGATCGCCGAAACCCTAATACCGTCGGTCAGGTTCTCCGATGATGGTGTCC
773 CC-CCGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCC
15406993 TGATCTGGTC
Statistics
Matches: 3808, Mismatches: 431, Indels: 211
0.86 0.10 0.05
Matches are distributed among these distances:
859 7 0.00
861 1 0.00
862 537 0.14
863 133 0.03
864 71 0.02
865 5 0.00
866 75 0.02
867 9 0.00
868 1 0.00
869 1 0.00
870 335 0.09
871 344 0.09
872 3 0.00
873 2 0.00
874 8 0.00
876 2 0.00
877 2 0.00
878 5 0.00
879 4 0.00
880 2 0.00
881 4 0.00
883 3 0.00
884 2 0.00
885 182 0.05
886 576 0.15
887 2 0.00
888 490 0.13
889 582 0.15
890 331 0.09
891 7 0.00
892 4 0.00
893 78 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
GCAACCCTCAGTGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
GGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
GGCGGGCGGGCACTACTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCTGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCC
CTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCGAGCGAAGAAAA
ATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
Found at i:15405319 original size:26 final size:26
Alignment explanation
Indices: 15405290--15405342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15405280 CCGGTCTGAT
*
15405290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15405316 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15405342 C
1 C
15405343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15406498 original size:888 final size:893
Alignment explanation
Indices: 15405183--15406992 Score: 2618
Period size: 888 Copynumber: 2.0 Consensus size: 893
15405173 CGGTAACCCC
* * * * *
15405183 CCGGTCAGGTTCTCCGATGATGCTATCCTAGCGAGGAAAAATACAGCACCAGCACATGCCCGAGC
1 CCGGTCAGGTTCTCCGATGATGGTGTCCCAGCGAAGAAAAATACAGCACCAGCACATGCCAGAGC
* * * *
15405248 CCAGCATCTGCTGCCGCAACCCTCGGTCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
66 CCAGCATCTGCTGCCGCAACCCTC-GTCTAGTCCGGTCCGATCATAGAATGGGAATGAACTCCGT
* *
15405313 ATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTC
130 ATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * * * * *
15405378 AGCCGGCTAGTGGGGCGGGTTGCAAAGCCGGGGATCGATCGGGTCTCCCTCTGCGTGCTGTCGAT
195 AGCCGGCCAGAGGGGCAGGATGCAAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGAT
* *
15405443 CCTACTACTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCC
260 CCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCC
* *
15405508 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGC
325 AACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
* * * *
15405573 CATGAATCGATAGGGCGGTAGGTGGGTTTTGGCACATCGTCAAATTTTTGCCATGCCACTACCAT
390 CATGAATCGATAGGGCGGTAGGTGGGTTTAGGCACATCGTCAAATTTCTACCATGCCAATACCAT
*
15405638 TTTTCTGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACG
455 TTTTCTGCCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACG
* * *
15405703 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGCTC-GAGATTTTTTAAAATTTTTT
520 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGGA-ATTTTTTAAAATTTTTT
*
15405767 CAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
584 CAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAA
* * ** *
15405832 ACATTCAGCTAAAAA-ATCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTT
649 AAATGCAAATAAAAACATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
15405896 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGA
714 CAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
* * *
15405961 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACA
779 GTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCACACA
* * * *
15406026 TCATATGCGC-ACACCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCG
844 TCATATGCACTACA-CCCCC-GCCCCCCTCGATCGCCGAAACCCCAATACCG
* * * *
15406076 CCGGTCAAGTTCTCCGACGATGGTGTCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGC
1 CCGGTCAGGTTCTCCGATGATGGTGTCCCAGCGAAGAAAAATACAGCACCAGCACATGCCAGAGC
* ** * **
15406141 CCAGCATGTGCTGTTGCAA-CC-C-TC-AGTCCGGTCCGATCATAGAATGGGGATGAACTTTGTA
66 CCAGCATCTGCTGCCGCAACCCTCGTCTAGTCCGGTCCGATCATAGAATGGGAATGAACTCCGTA
* * *
15406202 TGCTT-GCACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTC
131 TGCTTAG-ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * * *
15406266 AGTCGGCCAGAGGGGCAGGATGCGCAAGCTGGGG-TCGGCCGGGTCCCCCTCTGCATGCTGTCTA
195 AGCCGGCCAGAGGGGCAGGATGC-AAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGA
** * *
15406330 TCCTGTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGTCTC-AA
259 TCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG-C-CGAA
* * * * *
15406394 -CCAATCGACGAAACGAGCGGGTGATCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
322 GCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * * * * *
15406458 AGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGC
387 AGCCATGAATCGATAGGGCGGTAGGTGGGTTTAGGCACATCGTCAAATTTCTACCATGCCAATAC
* * *
15406523 CATTTTTCTGGCTTGTAAATTCAGACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
452 CATTTTTCTGCCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAG
* *
15406588 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGAATTTTTTAAAATTTT
517 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGGAATTTTTTAAAATTTT
*
15406653 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAA
582 TTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAA
*
15406718 AAAAATGCAAATAAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
647 AAAAATGCAAATAAAAACATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
15406783 TTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
712 TTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
* **
15406848 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACTAGCACCCATCGTA
777 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCACA
* * * *
15406913 CATCATGTGCACTTCACCCCCGTCCCCCTCGATCGCCGAAACCCTAATACCG
842 CATCATATGCACTACACCCCCGCCCCCCTCGATCGCCGAAACCCCAATACCG
*
15406965 TCGGTCAGGTTCTCCGATGATGGTGTCC
1 CCGGTCAGGTTCTCCGATGATGGTGTCC
15406993 TGATCTGGTC
Statistics
Matches: 813, Mismatches: 96, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
887 1 0.00
888 495 0.61
889 239 0.29
890 3 0.00
891 1 0.00
892 2 0.00
893 72 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
CCGGTCAGGTTCTCCGATGATGGTGTCCCAGCGAAGAAAAATACAGCACCAGCACATGCCAGAGC
CCAGCATCTGCTGCCGCAACCCTCGTCTAGTCCGGTCCGATCATAGAATGGGAATGAACTCCGTA
TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
GCCGGCCAGAGGGGCAGGATGCAAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATC
CTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCA
ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
ATGAATCGATAGGGCGGTAGGTGGGTTTAGGCACATCGTCAAATTTCTACCATGCCAATACCATT
TTTCTGCCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGA
CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGGAATTTTTTAAAATTTTTTCA
GAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAA
ATGCAAATAAAAACATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCACACATC
ATATGCACTACACCCCCGCCCCCCTCGATCGCCGAAACCCCAATACCG
Found at i:15408639 original size:25 final size:26
Alignment explanation
Indices: 15408595--15408646 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15408585 CCCGTCTTAT
15408595 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15408621 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15408646 C
1 C
15408647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15409386 original size:881 final size:884
Alignment explanation
Indices: 15406996--15410401 Score: 4716
Period size: 888 Copynumber: 3.8 Consensus size: 884
15406986 GGTGTCCTGA
** ** *
15406996 TCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATG-C--AGCCAACCAATGAAATGGGCTG-G
1 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA----C-GAG
* * *
15407057 CGGGCGGGCGAGCACTACGTCGACCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGT
61 CGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
15407122 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTTTGGCTTGTAAATTC
126 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTC
* * *
15407187 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTTA
191 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
* * * * * * * *** *
15407252 AGATTTTCAAAACATTTCACGGTTTGGGATTTTTTTAAATTTTTTCAGAAA-CCTTTTTGGCCCT
256 TGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTACA-AAAGGAGTTTTGGCCCC
*
15407316 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCG
320 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
15407381 AAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATT
385 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
15407446 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
450 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15407511 GATAGGGGGCCAATATAAGGGCCAAGTTCAAGCACCCATCGCACATCCTGTGCGCACACCCCCC-
515 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
15407575 GCCCCCCTCGATCGTCGAAACCCCAAAGTCGTCGGTCAGGTTCTCCGATGATGGTGTCCCGACGA
580 GCCCCCC-CGATCGTCGAAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * *
15407640 AGAAAAATATGGCATCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
644 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCT
* * * * * * *
15407705 AATCTTAGACTGGGAAAGAACTTCATACGCTTAGACTGGGAATGAACCCCGTATGCCTATGTCAA
709 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * * *
15407770 CCCACGAAACGAGCATACAAGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGTGGATCGA
774 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* ** **
15407835 TCGAGTCCCCTCTGTGTGCTGCCGATCCTTTTACCGTAACCCTCGG
839 TCGGGTCCCCTCTACGTGCTGCCGATCCTGCTACCGTAACCCTCGG
* * * * * * *
15407881 GCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCCTAAGACAA-TAGATGAAACGAGCGAA
1 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCG--
* * * *
15407945 CGAGCGGTCGGGCACTACGTCGACCAAAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
63 -G-GCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
15408010 AGGTGGGTTCAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTCTAAATTC
126 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTC
*
15408075 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGCTTTCTATTTTTCA
191 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
* * *
15408140 TGATTTTCGAAACTTTTTACGGTTCGGTA-TTTTTAAAATTTTTGCAGAAGGAGTTTTGGCCCCA
256 TGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTACAAAAGGAGTTTTGGCCCCA
* * *
15408204 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGCATGCCCAAAAAAATTCAGCTAAGAACTCG
321 AACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
15408269 AAGTGTACAATATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACT
385 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
15408334 GGCAGCAAACTTGTAAAATCTCAAATACTCTTTAAGGAGGTGTGAGTTCTCGAGATTTGGTGAGG
450 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15408399 TATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCACACATCATGTGCGCACACCCCCCG
515 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * *
15408464 GCCCCCCCGATCGTCG-GAGCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCTGA-GAA
580 GCCCCCCCGATCGTCGAAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACG-A
* * * *
15408527 AGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCCGTCT
644 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCT
* *
15408592 TATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAA
709 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
15408656 CCCATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
774 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* ** **
15408721 TCGGGTCCCCATCTACGTGCTACCGATCCTGCTACCACAACCCTTAG
839 TCGGGTCCCC-TCTACGTGCTGCCGATCCTGCTACCGTAACCCTCGG
* *
15408768 TCTGATCCGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
1 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
* * *
15408832 GGGCGGGCACTATGCCTG-CCAGAGAGACGGGGTGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 GGGCGGGCACTACGTC-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15408896 -GGTTTAGGCACATCTTTATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
130 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
*
15408960 AACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
* *
15409025 TTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTT-CAAAAGGAGTTTTGGCCCCAAACT
260 TTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTACAAAAGGAGTTTTGGCCCCAAACT
* * *
15409089 TAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAG-TGAAAAACTCAAAGT
325 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGT
15409153 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
389 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
15409218 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
454 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
15409283 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCGGCCC
519 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * * *
15409348 CCTCGATCGTCGGAACCACAATGCCGCCGGCCAGGTTCTCCGACGATGGTGTCCCGACAAAGAAA
584 CCCCGATCGTCGAAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAA
* * *
15409413 AATATGGCACCAGCACATGCCCGAGGCCAGCATGTGCTACCACAACCCTCGGA-CCGGTCTGATC
649 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCCGGTCTGATC
* * *
15409477 TGACACTGGGAATGAACTCCGTATGCCTT-GA-TGGGGAATGAACTCCGTATGCCCAAGTCAACC
713 TTAGACTGGGAATGAACTCCGTATG-CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACC
* *
15409540 CACGAAACGAGCGTGCGGGTGCGT-AGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAT
776 CACGAAACGAGCGTGCGGGCGC-TCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * *
15409604 CGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTGTAACCCTCGG
840 CGGGT-CCCCTCTACGTGCTGCCGATCCTGCTACCGTAACCCTCGG
* * * *
15409650 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAACCGACCGACGAAACGAGTGGGC
1 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----GC
* * * *
15409715 GGGTGGGCGGGTGGGCGGGTACTATGTCGGCCAGAGAGATC-AGATGCGCAAGCCGTGGATCGAT
62 ----GGGC----GGGCGGGCACTACGTCGACCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGAT
15409779 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTT
118 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTT
*
15409844 GTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
183 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
* * * * *
15409909 ATTTCTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTACAGAAGGAGTTT
248 ATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTACAAAAGGAGTTT
* *
15409974 TGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCAAAAAAAAAAATTCAGCT
313 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCT
* * * *
15410039 AAAAACTCGAAGCGTGCAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTGT-AGATACTTT
376 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTT
** * *
15410103 AATTACTACTAGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGG
440 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
15410167 TTTGATGAGAGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGC
505 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
15410232 ACACCCCCTCGGCCCCCCCGATCATCGAAACCCCAAAACCGTCGGTCAGGTTCTCCGATGATAGT
570 ACACCCCC-CGGCCCCCCCGATCGTCGAAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGGT
** * *
15410297 GTCCCGACGAAGAAAAATGCGGCACCAGCCCATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
634 GTCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
15410362 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
699 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15410402 CTAAGCCAAC
Statistics
Matches: 2237, Mismatches: 235, Indels: 85
0.87 0.09 0.03
Matches are distributed among these distances:
879 1 0.00
880 225 0.10
881 319 0.14
882 209 0.09
883 42 0.02
884 4 0.00
885 30 0.01
886 124 0.06
887 232 0.10
888 427 0.19
889 7 0.00
891 4 0.00
894 1 0.00
895 56 0.03
896 162 0.07
897 56 0.03
898 109 0.05
899 227 0.10
900 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTACAAAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGTCGAAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAA
TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
CCCTCTACGTGCTGCCGATCCTGCTACCGTAACCCTCGG
Found at i:15409722 original size:8 final size:8
Alignment explanation
Indices: 15409709--15409734 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
15409699 GACGAAACGA
15409709 GTGGGCGG
1 GTGGGCGG
15409717 GTGGGCGG
1 GTGGGCGG
15409725 GTGGGCGG
1 GTGGGCGG
15409733 GT
1 GT
15409735 ACTATGTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.73, T:0.15
Consensus pattern (8 bp):
GTGGGCGG
Found at i:15411115 original size:26 final size:26
Alignment explanation
Indices: 15411079--15411131 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411069 TCGGTCTGAT
15411079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15411105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15411131 C
1 C
15411132 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15411996 original size:26 final size:26
Alignment explanation
Indices: 15411967--15412019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411957 CCGGTTTGAT
*
15411967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
15411993 CTTAGATTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
15412019 C
1 C
15412020 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:15412886 original size:26 final size:26
Alignment explanation
Indices: 15412857--15412909 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412847 CCGGTCCGAT
15412857 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15412883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15412909 C
1 C
15412910 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15413494 original size:889 final size:888
Alignment explanation
Indices: 15410348--15414921 Score: 5751
Period size: 889 Copynumber: 5.1 Consensus size: 888
15410338 CCAGCATGTG
* *
15410348 CTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
15410413 GACGAAACGAGCGGGCAGGCGGGCGGGTACTACGTCGGCCAGAGAGGTGGGACGCGTAAGTCATG
66 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATG
* * * * * *
15410478 GATCGATAGGGTGGTAGGTGAGTTTTGGTACATCTTCATATTTCTACTAAGCCAATGCCATTTTT
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
15410543 CTGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTC
196 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
15410608 GTTTTCTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCGAGATATTTTGAAATTTTTTCAGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGA-ATTTTTTAAAATTTTTTCAGAA
* * * * *
15410673 GGAGTTTTGACTCCAAACTTGGAACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * **
15410738 CAGCCAAAAACTCGAAGTTTACAAGATTTTGTTACCATTTGAAAAAAGTATCCAAATTTCAAACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
*
15410803 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
15410868 GAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
15410933 GCGCACACCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGATTCTTCGACGAT
585 GCGCACACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGAT
* * * * *
15410998 GGTGTCCCGGTGAAGAAAAATGCAGCGCCAGCACATGCCCGAG-GATAGCATGTGCTGCCACAAT
649 GGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGCATGTGCTGCCGCAAC
*
15411062 CCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
714 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
15411127 TATGCCCAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGC
779 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
15411192 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTA
844 AAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTA
** * * * * **
15411237 CTGCCGCAACCCTCGGTCTAGTTCAAACTTAGACAGGGAATGAACTTTGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
15411302 GATGAAACGAGCGGGTGGGCGGGAC-GGAACTATGTCGGCCAGAGAGGCGGGATGCGCAAGCCAT
66 GACGAAACGAGCGGGCGGGCGGG-CGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCAT
*
15411366 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCCATGCCAATGCCATTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* *
15411431 TCTGGCCTGTAAATTCATACAATGGTCCCTTAATCCTTCATGTGAAGTTTCATGGCAAGACGACT
195 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* ** * *
15411496 CATTTTCTATTTTTTTTAATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATCTTTTCAGA
260 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGA-ATTTTTTAAAATTTTTTCAGA
* * * * *
15411561 AGGAGTTTCGGCCCCAAACTTGGTACACATGATCCTTGTATTTTTATTGGCATGCACAAAAATAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
15411626 TCAGCTAAAAATTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* *
15411691 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
15411756 GGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGAACCAGCACCCATCGCACATCTTA
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * ** *
15411821 TGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAATACCGCCGGTCAATTTCACCGACGAT
584 TGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGAT
** * * * * *
15411886 GGTGTCGTGGCGAAGAAAAATGTGGTACCAGCACATGCCTGAGCC-TAGCATGTG-TAGCCGCAG
649 GGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGCATGTGCT-GCCGCAA
* * * *
15411949 CCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACGCC
713 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
15412014 GTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCTGTCGGCCAGAGGGGCGGGATGCG
778 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * ** * * * * *
15412079 TAAGCTGGGGATCGGCCGTGTCCCCCTCTGTGTGCTGCTGATCTTA
843 CAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTA
** * *
15412125 CTGCCGCAACCCTCGGTTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACC
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * **
15412190 GAGGAAACGAGCGAGCGGGCGGGCGAGCACTAC-TCCGACCTGAGAGGCGGGTTGCGCAAGCTGT
66 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT-CGGCCAGAGAGGCGGGATGCGCAAGCCAT
* * * **
15412254 AGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCCACACCAATGCCATTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* * *
15412319 TTTGGCTTGTAAAATCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
195 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
15412384 CGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTCAGA
260 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-GAATTTTTTAAAATTTTTTCAGA
* * *
15412449 AGGATTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCTTGCACAAAAAAAA
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAA
* *
15412513 TTTAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
15412578 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
15412643 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAACCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
15412708 GTGCGC-CTACCCCCCGGTCCCCCCTGATTGTCGAAACCCCAATATCGCCGGTCAGGTTCTCCGG
583 GTGCGCAC-ACCCCCCGG-CCCCCC-GATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGA
** *
15412772 CGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAT-GCATGTGCTGCCG
645 CGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGCATGTGCTGCCG
*
15412836 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
710 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
** *
15412901 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTTGTCGGCCAGAGGGGCGGGAT
775 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* *
15412966 GCGCAAGCCGGGGATCG-GCTGTGTCCCTCTCTGCGTGCTGCCGATCCTA
840 GCGCAAGCCGGGGATCGATC-GGGTCCCTCTCTGCGTGCTGCCGATCCTA
* * ** *
15413015 CTGCCACAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
15413080 GACAAAACGAGCGGACGGGC-GACGGGCTCTACGTCGGCTAGAGAGGCGAGATGCGCAAGCCATG
66 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATG
*
15413144 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATTCCATTTTT
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * * * *
15413209 CTGGCCTGTAAATTCATACAATGGTTCCATATGCCTTCATGTGAAGTTTCATGGCAAGATGACTC
196 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
15413274 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCAGAATTTTTTAAAATTTTTTCAGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-GAATTTTTTAAAATTTTTTCAGAA
* * * * *
15413339 GGATTTTTGTCCCCAAACTTGGTAGATGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * ** *
15413404 TAGCTAAAAACTCGAAGTTTACAAGATTTTGTTACCATTTGAAAAAAGTATCCAAATTTCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
* *
15413469 CTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
15413534 GAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
15413599 GCGCACACCCCCTGGCCCCCCGATCATCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATG
585 GCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGATG
* * * * *
15413664 GTGTCCCGGTGAAGAAAAATGCAGCACCAGCACATGCTCGAG-GATAGCATGTGCTGCCACAATC
650 GTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGCATGTGCTGCCGCAACC
* * * * *
15413728 CTCGATTCGGTCTGATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACTGGGAATGAACTTCGT
715 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * ** *
15413793 ATGCCCAAGTCAACCTAAGAAACGAGCGTGCTGGCTCTCAGCAGGCCAGAGGGGAAGGATGCGTA
780 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
*
15413858 AGCCGAGGATCGATCGGGTCCGTCTTTACGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
845 AGCCGGGGATCGATCGGGTCC--C--T-C---T-C-T-G-C---G--TG----C----TGCC---
* *
15413923 GTCCCTCTCTGCGTG
882 G-----ATC--C-TA
* *
15413938 CTGTCGATCCTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATG
1 C--T-G------C--C-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
15414003 CCTAAGCCAATCGACGAAATGAGCGGGTGGACGGGTGGGCACTACGCCGGCCAGAGAGGTGGGAT
54 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGAT
* * * * *
15414068 GCGCAAGTCATGGATCGATAGAGTGGTAGTTGGGTTTAGGAACATCTTCATATTTCTACCATGCC
119 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* * *
15414133 AATACCATTTTTCTAGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
184 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * *
15414198 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTCA
249 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GATT-CGAATTTTTTAA
* * *
15414263 AATTTTTTCAGAAAGAGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCAT
312 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
15414328 GCACAAAAAAATTCATCTAAAAACTCGAAGTGTAC---A-------A-CATTTTAAAAATGTGTC
377 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * *
15414382 CCCATTTCAGACACTTTAATTGCTACTTGCAGCAAACCTGTAAAATCCCAAATCCTCTTTAAGGG
442 CCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
15414447 GGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCA
507 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * **
15414512 TAGCACATCATCTGCGCACACCCCCCGGCCCCCCCGATCG-CCAGAACCCCAATGCAGTAGGAT-
572 TCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGA-AACCCCAATACCGCCGG-TC
** * *
15414575 AGGTTCTCCGGTGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC-CAGC
634 AGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGC
* * * * *
15414639 ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGAC
699 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* **
15414704 TGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTACCAG
764 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* ** * * * * *
15414769 AGGGGAGGGACACGCAAGTCGGGGATCGATCGGGTCCGTCTTTGCGTGCTGCCAATCTTA
829 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTA
* * * * * *
15414829 CTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAACCAACT
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
** *
15414894 GACGAATTGAGCGAGCGGGCGGGCGGGC
66 GACGAAACGAGCGGGCGGGCGGGCGGGC
15414922 GGACGGACGG
Statistics
Matches: 3186, Mismatches: 426, Indels: 156
0.85 0.11 0.04
Matches are distributed among these distances:
879 74 0.02
880 1 0.00
882 1 0.00
886 2 0.00
887 232 0.07
888 768 0.24
889 990 0.31
890 333 0.10
891 5 0.00
892 1 0.00
894 2 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
902 5 0.00
904 2 0.00
906 1 0.00
908 1 0.00
910 2 0.00
912 5 0.00
915 2 0.00
916 1 0.00
917 1 0.00
919 1 0.00
920 2 0.00
922 2 0.00
923 3 0.00
925 1 0.00
926 160 0.05
927 221 0.07
928 1 0.00
932 1 0.00
934 2 0.00
935 67 0.02
936 189 0.06
937 102 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAATTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGG
TGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCATAGCATGTGCTGCCGCAACCC
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTA
Found at i:15413773 original size:26 final size:26
Alignment explanation
Indices: 15413744--15413796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15413734 TCGGTCTGAT
*
15413744 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15413770 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15413796 C
1 C
15413797 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15414700 original size:26 final size:26
Alignment explanation
Indices: 15414671--15414723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15414661 CTGATCCGAT
*
15414671 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
15414697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15414723 C
1 C
15414724 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15415094 original size:26 final size:26
Alignment explanation
Indices: 15415058--15415110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415048 CTGGTCTGAT
*
15415058 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15415084 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15415110 C
1 C
15415111 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15415970 original size:26 final size:26
Alignment explanation
Indices: 15415941--15415991 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415931 CTGGTCCGAT
15415941 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
15415967 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15415992 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15416863 original size:26 final size:26
Alignment explanation
Indices: 15416825--15416877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15416815 CAGGTCCCAT
*
15416825 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15416851 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15416877 C
1 C
15416878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15418604 original size:26 final size:26
Alignment explanation
Indices: 15418575--15418627 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418565 CCGGTGCGAT
* *
15418575 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15418601 CTTAGATTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15418627 C
1 C
15418628 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.