Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 78 of 160
Found at i:15419447 original size:889 final size:887
Alignment explanation
Indices: 15417712--15420641 Score: 3813
Period size: 889 Copynumber: 3.3 Consensus size: 887
15417702 CCGGTCTGAT
* **
15417712 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCATTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
15417777 CGGCCAGAGGGGTCGGATGTGCATGTCAGGGATCGATCGAGTCCCCCTCTGCGGGCTATCGATCC
66 CGG-CAGAGGGGTCGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
15417842 TGCTGCCGCAACCCTCGATCCGA-TCGGATCCTT-GACTGGGAATGAACTCGGTATGCCTAAACC
130 TGCTGCCGCAACCCTCGGTCTGATTCGGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
15417905 AACCGACGAAACGAGCAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGACGCGCAAGC
194 AACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* *
15417970 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCAT
259 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCAT
* *
15418035 TTTTCTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACG
324 TTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACG
* * * * *
15418100 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTCACGGCTCGAGATTTTATAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* *
15418165 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTT-TTGGCATGCACAAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
*
15418229 AATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
15418294 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15418359 TCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * * * *
15418424 ATGTGCGCACACCCCCCCAGCCCCCTCGATCGTCGGAACCCCAAAGTCTCCAGTCAGGTTCTTCA
713 ATGTGCGAACACCCCCTCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * ** * *
15418489 GTGATGGTGTCCCAGCGAAGAAAAAAGCGGCACCAGCACATGCTTGAGCCCAGCATGTGTTACCG
778 GTGATGGTGTCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCG
15418554 CAACCCTCGGTCCGGTGCGATCTTATACTGGGAATGAACTCCGTATG
842 CAACCCTCGGTCCGGTGCGATCTTA-ACTGGGAATGAACTCCGTATG
* * * *
15418601 CTTAGATTAGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
15418666 CGGCTAGAGGGG-CCGACTGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATC
66 CGGC-AGAGGGGTCGGA-TGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
** * ** * * * * *
15418730 CTATTGTCGCAATGCTTGGTCTGATTC-GATCTTTGATTGGCAATGAACTCCATATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGATTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
15418794 AACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGATAGGCGGGATGCTCAAGC
194 AACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
** * * *
15418859 CGTGGATATATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTTCCGTGCCAATACCAT
259 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCAT
15418924 TTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACG
324 TTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACG
* *
15418989 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
** * * *
15419054 AGAAGTTGTTTTGGCCCCAAACTTTGTAGACGTGATGCTTGTATTTTTGTTGGCATGCAGAAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
15419119 ACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
15419184 GACACTTTAATGGCTACCGACAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
15419249 TCTCGAGGTTTGATGAGGGATA-GGGGCCAATATGATGGCCAATTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
15419313 ATGTGCGTACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
713 ATGTGCGAACACCCCCTCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * * *
15419378 GCGATGGTGTCTCGACGAAGAAAAATGTGGCACCACCACATGCCCAAGCCCAGCATGTGCTATCG
778 GTGATGGTGTC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCG
15419443 CAACCCT---T--GGT--G-------C-------G-A-TCCG-AT-
842 CAACCCTCGGTCCGGTGCGATCTTAACTGGGAATGAACTCCGTATG
* * * *
15419464 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
15419529 CGACAATAAGGG-CGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTACCGATC
66 CGGC-AGAGGGGTC-GGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * * * **
15419593 CTGCTGCAGCAACCCTCAGT-TCAGTCTGATCATAGACTGGGAATGAACTCTGTATTTCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGATTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
15419657 AACCAATGAAACGAGCGGACGGGCGGAG-GGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAG
194 AACCAACGAAACGAGCGGGCGGGCGG-GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
15419721 CCGTGGATCGATAGGGTGGA-AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGGC
258 CCGTGGATCGATAGGGT-GATAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCC
* * * * * * *
15419785 ATTTTTCTTGCTTGTAAATTCAT-CTAATGGTCCCTTAAGCGTTCGTGTGAAATTTCGTGGCAGG
322 ATTTTTCTAGCTTGTAAATTCATAC-AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAG
* **
15419849 ACGACTCGTTTTCTA-TTTTCACGACTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
15419913 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
15419978 AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGCCCCCATT
516 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** *
15420043 TCGGACACTTTAATGGCTACTGGCAATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15420108 TGTTCTTGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
15420173 ATCATGTGCGAACAACCCCCTCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAAGTTC
710 ATCATGTGCGAAC-ACCCCCTCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * *
15420238 TTCGGTGATGGTGTCCGGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGTATGTGCT
774 TTCGGTGATGGTGTCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
15420303 ATCACAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
838 ATCGCAACCCTCGGTCCGGTGC-GATCTTA-ACTGGGAATGAACTCCGTATG
*
15420354 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGAGG-G----G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTCAG
** * ** * **
15420414 -C--CAGAGGGGTAAGATGCGCAAGCCGACGATCG-TCCGGGTCCCCCACTGCGTGCTGTCGATC
65 TCGGCAGAGGGGTCGGATGCGCAAGTCGGGGATCGAT-CGGGTCCCCCTCTGCGTGCTACCGATC
* * * *
15420475 CTGCTACCGTAACCCTCGGTCTGGTT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGATTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
15420539 AACCGATGAAACGA----GTGGGCGGGCGGGCATTACGTCGGCCAGAGAAGCGGGATGCGCAAGT
194 AACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * *
15420600 CATGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCA
259 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCA
15420642 AAAAAGTATC
Statistics
Matches: 1772, Mismatches: 221, Indels: 107
0.84 0.11 0.05
Matches are distributed among these distances:
862 249 0.14
863 381 0.22
864 118 0.07
865 4 0.00
866 1 0.00
867 2 0.00
869 3 0.00
871 1 0.00
874 1 0.00
877 2 0.00
878 75 0.04
879 1 0.00
881 1 0.00
882 109 0.06
883 3 0.00
884 3 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 11 0.01
889 589 0.33
890 212 0.12
891 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCAGAGGGGTCGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCGGTCTGATTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
TGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTT
TTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGAACACCCCCTCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTG
ATGGTGTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAAC
CCTCGGTCCGGTGCGATCTTAACTGGGAATGAACTCCGTATG
Found at i:15420357 original size:26 final size:26
Alignment explanation
Indices: 15420328--15420377 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15420318 CCGGTCTGAT
15420328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15420354 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15420378 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15420971 original size:26 final size:26
Alignment explanation
Indices: 15420942--15420994 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15420932 CCGGTTCGAT
*
15420942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15420968 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15420994 C
1 C
15420995 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15421253 original size:622 final size:615
Alignment explanation
Indices: 15420023--15421262 Score: 1719
Period size: 622 Copynumber: 2.0 Consensus size: 615
15420013 TTGTGACCAT
* * * *
15420023 TTCAAAAAAGTGCCCCCATTTCGGACACTTTAATGGCTACTGGCAATAAACCTGTAAAATCTCAA
1 TTCAAAAAAGTACCCCCATTTCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
*
15420088 ATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCA
66 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCA
* * *
15420153 AGTACCAGCACCCATCGCACATCATGTGCGAACAACCCCCTCGGCCCCCCCGATCATCGGAACCC
131 ACTACAAGCACCCATCGCACATCATGTGCGAACAACCCCCTCGGCCCCCCCGATCATCGAAACCC
* * ** * ** *
15420218 CAATGCCGCCGGTCAAGTTCTTCGGTGATGGTGTCCGGGTGAAGAAAAATACGGCACCAGCACAT
196 CAATGCCGCCAGTCAAGTTCTCCGACGATGCTGTCCGGACGAAGAAAAATACGACACCAGCACAT
* *
15420283 GCCCGAGCACAGTATGTGCTATCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
261 GCCCGAGCACAGCATGTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
*
15420348 CGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGAGGG
326 CGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGAGGG
* * * *
15420413 GCCAGAGGGGTAAGATGCGCAAGCCGACGATCGTCCGGGTCCCCCACTGCGTGCTGTCGATCCTG
391 GCCAGAGGGGCAAGATGCGCAAGCCGACGATAGTCCGGGTCCCCCACTACGTGCTGTCAATCCTG
***
15420478 CTACCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
456 CTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
15420543 GATGAAACGAGTGGGCGGGCGGGCATTACGTCGGCCAGAGAAGCGGGATGCGCAAGTCATGGATC
521 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAAAGAAGCGGGATGCGCAAGCCATGGATC
*
15420608 GATAGGGTGGTAGGTGTGTTTAGGCACATC
586 GATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
15420638 TTCAAAAAAGTATCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
1 TTCAAAAAAGTACCCCCATTTCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
* *
15420703 ATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
66 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCA
* * *
15420768 ACTACAAGCACCCATTGCACATCATGTGCGCAC-ACCCCC-C-GCCCCCTTTCGATCATCGAAAC
131 ACTACAAGCACCCATCGCACATCATGTGCGAACAACCCCCTCGGCCCCC--CCGATCATCGAAAC
* * *
15420830 CCTAATGCCGTCAGTCAGGTTCTCCGACGATGCTGTTCC-GACGAAGAAAAATACGACACCAGCA
194 CCCAATGCCGCCAGTCAAGTTCTCCGACGATGCTG-TCCGGACGAAGAAAAATACGACACCAGCA
* * *
15420894 CAT-CCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATG
258 CATGCC-CGAGCACAGCATGTGCTACCACAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATG
* *
15420957 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAGACGAGCGTGC
321 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
15421022 G-GGCCCTCAGCTGTCTAGAGGGGCAGGATGCGTAAGCCGA-GTATAAG-CCGGGTCCCCCTCTA
386 GAGG------G--G-CCAGAGGGGCAAGATGCGCAAGCCGACG-AT-AGTCCGGGTCCCCCACTA
* ** *
15421084 TGTGCTG-CTAATCCTGCTGTCGTAACCCTTGGT-TCGGTCCAATCTTAGACTGGGAATGAACTC
440 CGTGCTGTC-AATCCTGCTACCGTAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTC
* *
15421147 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTTGGCCAAAGAGGCGGG
503 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAAAGAAGCGGG
*
15421212 ATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
568 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
15421260 TTC
1 TTC
15421263 GTATTTCTAT
Statistics
Matches: 549, Mismatches: 58, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
612 6 0.01
613 6 0.01
614 183 0.33
615 153 0.28
619 1 0.00
621 4 0.01
622 195 0.36
623 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (615 bp):
TTCAAAAAAGTACCCCCATTTCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCA
ACTACAAGCACCCATCGCACATCATGTGCGAACAACCCCCTCGGCCCCCCCGATCATCGAAACCC
CAATGCCGCCAGTCAAGTTCTCCGACGATGCTGTCCGGACGAAGAAAAATACGACACCAGCACAT
GCCCGAGCACAGCATGTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGAGGG
GCCAGAGGGGCAAGATGCGCAAGCCGACGATAGTCCGGGTCCCCCACTACGTGCTGTCAATCCTG
CTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAAAGAAGCGGGATGCGCAAGCCATGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATC
Found at i:15422318 original size:26 final size:26
Alignment explanation
Indices: 15422289--15422341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422279 CCGGTGCGAT
*
15422289 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15422315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15422341 C
1 C
15422342 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15422604 original size:159 final size:157
Alignment explanation
Indices: 15422315--15422843 Score: 673
Period size: 159 Copynumber: 3.3 Consensus size: 157
15422305 ACTCCGTATG
15422315 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
15422380 C-AGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTGCGTGCTTCCAATC
66 CGA-CCAGAGGGGTGGGATGCGCAAGCCGGGGATC-AACGGGTCCCCCACTGCGTGCTT-CGATC
* * * * * *
15422444 CTACAGCCGCAACCCTTGGTCTAGTCCGAT
128 CTGCTGCCGCAACCCTCGATCTGGTCTGAT
*
15422474 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* *
15422539 CGATCAGAGAGGTGGGATGCGCAAGCCGGGGATCAACTGGGTCCCCCACTGCGTGCTGTCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCAAC-GGGTCCCCCACTGCGTGCT-TCGATCC
* * *
15422604 TGCTGTCACAACCCTCAATCTGGTCTGAT
129 TGCTGCCGCAACCCTCGATCTGGTCTGAT
* * * * * * *
15422633 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGAGTGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
15422698 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGACCCCCACTACATGCTATCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATC-AACGGGTCCCCCACTGCGTGCT-TCGATCC
*
15422763 TGCTGCCGCAACCCTCGATTTTGGTCTGAT
129 TGCTGCCGCAACCCTCGA-TCTGGTCTGAT
* * * * *
15422793 CTTAGACTAGGAATGAACTCTGTATGCCTAGGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
15422844 GGCGGGCGGG
Statistics
Matches: 322, Mismatches: 43, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
158 3 0.01
159 261 0.81
160 58 0.18
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCAACGGGTCCCCCACTGCGTGCTTCGATCCTG
CTGCCGCAACCCTCGATCTGGTCTGAT
Found at i:15423522 original size:26 final size:26
Alignment explanation
Indices: 15423493--15423545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15423483 TCGATCCGAT
15423493 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
15423519 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15423545 C
1 C
15423546 CTTAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15424420 original size:26 final size:26
Alignment explanation
Indices: 15424384--15424433 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15424374 GTCCGATCTG
*
15424384 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
15424410 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15424434 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:15424917 original size:889 final size:885
Alignment explanation
Indices: 15422633--15425298 Score: 3767
Period size: 888 Copynumber: 3.0 Consensus size: 885
15422623 CTGGTCTGAT
* * * *
15422633 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGAGTGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCG-GAGCTCAGC
* ** * * * *
15422698 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGACCCCCACTACATGCTATCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
* * * * *
15422763 TGCTGCCGCAACCCTCGATTTTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAGGCCA
129 TGCTGCCGCAACCCTC-AATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
15422828 ACCGACGAAACGAGCGGGCGGGCGGGC--G--TTACGTCGACCAGAGAAGCGGGATACGCAAGCC
193 ACCGATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGAC
* *
15422889 GTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
15422954 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * ** * * * *
15423019 CTTGTTTTCTATTTTTCAAGATTTTCAAAACATTTCACGATTCAGGATTTTTTCAAATTTTTTCA
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * * *
15423084 GAAGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
453 GAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
15423149 ATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15423214 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAACTGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
15423279 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
* * * *
15423344 TGTGCACACACCCCCCCGGCCCCCCGAT-AGTCGAAACCCCAATGCCGCCGGTCGGGTTATCC-A
713 TGTGCGCACAACCCCCCGGCCCCCCGATCA-TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * *
15423407 GCGAAGGTGTCTCGGGGAAGAAAAATGCGGCACCAGCACCTGCACGAGCCTAGCATGTGCTGC-C
777 -CGATGGTGTCTC-GAGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTC
* *
15423471 GTAACCCTCGGTTCGATCCGATCTTACACTGGGAATGAACTCCGTATG
840 --AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15423519 CTTAGACTGGGAATGAACTCTGTATGCCTTAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC-GGAGCTCAGC
* * * *
15423584 CGGCC-GAGGGGCGGGATGCGTAAGCTGGGAATCGGTGGGGTCCCCCTCTGCGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
* ** **
15423648 TGCTGCCGTAACCCTC-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TGCTGCCGCAACCCTCAATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15423712 ACCAATGAAACGAG-TGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGAGATGCGTAAGT
193 ACCGATGAAACGAGCAGG-CGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGA
* *
15423776 CGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * *
15423841 TTTTCTGGCTTTTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTAATGGCAAGACG
322 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15423906 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTC
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** *
15423971 AGAAGGCGTTTTGGGGCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAA
452 AGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
15424036 AATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
15424101 GACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCATTAAGGGGGGGTGAGT
582 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
15424166 TCTCGAGGTTTGAAGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
* * * *
15424231 ATTTGCGCACAACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGA
712 ATGTGCGCACAACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * *
15424296 TGATGGTGTCCTTGCAG-AGAAACATGCAGCACGAGCACATGCCCGAGCCCAGCATGTGCTGCTA
777 CGATGGTGT-CTCG-AGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-
* * *
15424360 CAACCCTCAGTCC-AGTCCGATCTGAGACTGGGAATGAACTTCGTATG
839 CAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
15424407 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG-AGCTCAGC
* ** * *
15424472 CGGCCATAAAGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
* * *
15424537 TGCTGCAGCAACCCTCAATTCAGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTGCCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15424602 CTGATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGATAGGCGGGATGCGCAAGACA
194 CCGATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGACG
* **
15424667 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
15424732 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
324 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
15424797 TCATTTTTTATTTTTCACGATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAAATTTTTCAG
389 TCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
15424862 AAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
15424927 TTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
15424992 CACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTC
584 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15425057 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCCAGTACCAGCACCCATTGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
* * * * *
15425122 GTGCGCAC-ACCCCCCGGGCCGCCCCCGATCGTCGAAACCCCAATGTCGTCGGTCAAGATCTCCG
714 GTGCGCACAACCCCCC-GG-C-CCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
*
15425186 ACGATGGTGTCTCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCTG-TC
776 ACGATGGTGTCTCGA-GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTC
* *
15425250 GTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGAATG
840 --AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
15425298 C
1 C
15425299 CTAAACAAAC
Statistics
Matches: 1573, Mismatches: 179, Indels: 51
0.87 0.10 0.03
Matches are distributed among these distances:
883 3 0.00
884 60 0.04
885 61 0.04
886 63 0.04
887 4 0.00
888 651 0.41
889 593 0.38
890 12 0.01
891 125 0.08
892 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (885 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGAGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTG
CTGCCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGACGTG
GATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
GCGCACAACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GGTGTCTCGAGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTCAACCCT
CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15426011 original size:26 final size:26
Alignment explanation
Indices: 15425971--15426023 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15425961 CTGATCCGAT
15425971 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* * *
15425997 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15426023 C
1 C
15426024 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15427752 original size:26 final size:26
Alignment explanation
Indices: 15427723--15427775 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15427713 CTGATCCGAT
15427723 CTTAGACTA-GGAATGAACTCCGTATG
1 CTTAGAC-AGGGAATGAACTCCGTATG
15427749 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15427775 C
1 C
15427776 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15428449 original size:885 final size:883
Alignment explanation
Indices: 15425243--15437655 Score: 8218
Period size: 885 Copynumber: 13.9 Consensus size: 883
15425233 GCCCAACATG
* * * * *
15425243 TGCTGTCGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAACAAA
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* *
15425308 CTGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGA
* * * * *
15425373 TCAATAGGGTGGTAGGTGGGTTTGGGCAAATCTTCATATTTATGCCATGCCAATGCAATTTTTCT
131 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
*
15425438 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
15425503 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCAAGATTTTTTAAAATTTTTTCAGAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGG
* * * * *
15425568 ATTTTTAGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGCCATGCACAAAAAAATTC-
326 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
15425632 GACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
391 G-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
15425697 TTTAATGGCTACCAGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCA
455 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
15425761 AGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCGGCACCCATTGCACATCATGTG
520 AGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
15425826 CACACACCCCCCGACACCCCCGATCTCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
585 CACACACCCCCCGAC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * *
15425891 GTGTCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCTGCCGTAACCA
649 GTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-
* * *
15425956 TCGGTCTGATCCGATCTTAGACT-GGAAATGAACTCCATATGCTTAGGCTGGGAATGAACTCCGT
713 TCGGTCTGATCCGATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGT
* * * ** * * * * *
15426020 ATGCCTAAGTCAACCTATGAAATGAGCGTGCAAGTGGTCAGTCAGCCAGAGGGGCGGGATGCGTA
777 ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * *
15426085 AGCAGGGGATCGGTCGGGTCCCCCTCTACATGCTGTCGATCC
842 AGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTCTCGATCC
* * * * * * *
15426127 TACTG-CTGTAACCCTTGATCTGATCTGATCTTAGACTGGGGATGAACTCTGTATGCCTAAGCCA
1 TGCTGTC-GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
* * * *
15426191 ACCGATGAAACGAGCGGGCGGATGGGCTGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTC
65 ACCGACGAAACGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCC
* *
15426256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATT
126 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
* *
15426321 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACAA
191 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* ** * *
15426386 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCA
256 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCA
* * ** * * *
15426451 AAAGGACTTTTGGCCCCAAACTTTTTAGATATGATCCTTGAATTTTTTTTGGCATGCACAAAAAA
321 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
15426516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAATGTGTCCCCATTTCAG
386 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
15426581 ACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
451 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15426646 CTCGAGGTTTGATGAG-GCATAGGGGGACAATATAAGGGCCAAGTACCAGCGCCCATCGCACATC
516 CTCGAGGTTTGATGAGAG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *** *
15426710 ATGTGCGCACA-CCCCCGGCCCCCCTGATCATTGGAACCCCAATTCCGTCGGTCAGGTTCTCCGA
580 ATGTGCACACACCCCCCGACCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * * * *
15426774 TGGTGGTCTCCCGACGAAGAAAAATGCAGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCGT
644 CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
15426839 AA-C-C---C--A--CGGTC-----C-A-G--T---CT--G-AT-CTTAGACTGGGAATGAACTC
709 AACCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTC
* * * *
15426879 CGTATGCCTAAGTCAACCCATGAAAGGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGCTGT
774 CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* *
15426944 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTAC-CGATCC
839 GCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCT-CTCGATCC
* * *
15426989 TGCTGTAGCAACCCTTGGTCCGAT-CTATTCTTAGACTGGGAATGAACTCCA-TATGCCTAATCC
1 TGCTGTCGCAACCCTTGGTCCGATCCGA-TCTTAGACTGGGAATGAACT-CAGTATGCCTAAGCC
* * * * * * * *
15427052 CACCGATGAAACGAGCGGGTGGGCGAACGGGCATTACGCCGGCTAGAGAGGTGAGATGCACGAGC
64 AACCGACGAAACGAGCGGG-CGG-G--CGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGC
*
15427117 CGTGGATCAATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
125 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
15427182 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
190 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15427247 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTT
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
* * *
15427312 AGAAGGAGTTTTTGCCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCACAAAA
320 AGAAGGAG-TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15427377 AAATTCACCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
384 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * *
15427442 AGATACTTTAATTGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGAG
449 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
15427507 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACAT
514 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
15427572 CATGAGCATACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTAGGTCAGGTTCTCCG
579 CATGTGCACACACCCCCCGACCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* *
15427637 ACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
643 ACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
*
15427702 CAATCTTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAAC
708 CAA-CCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAAC
* *
15427767 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAT
772 TCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
15427832 GCCCAAGCCGAGGATCAATCGGGTACCCCTTTATGTGCTACT-GATCC
837 GCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCT-CTCGATCC
* * *
15427879 TGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTAAGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* * *
15427944 CAGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCACGCCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGA
* * * * *
15428009 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTT
131 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
*
15428074 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* ** * *
15428139 TTTCTATTTTTCACGATTTTTGAAACTTGTTACGGTTTGAGATTTTTTTAATTTTTTTCAGAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGG
* *
15428204 AGTTTTGGCCCCAAGCATT-GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
326 AGTTTTGGCCCCAAAC-TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
15428268 AGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
15428333 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCG
455 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
15428398 AGGTTTGACT-AGAGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGT
520 AGGTTTGA-TGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * ** *
15428462 GCGCACACCCCCCGACCCCTTCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTTTGATGAT
584 GCACACACCCCCCGACCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
** * *
15428527 GGTGTCCCGGTGAAGAAAAATGTGGCACGAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
648 GGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-C
* * * * *
15428592 CTCGGTCCGGTCCGATCTTAGA-TTGTGAATGAAGTCCGCATGCTTAGACTA-GGAATGAACTCC
712 CTCGGTCTGATCCGATCTTAGACTAG-GAATGAACTCCGTATGCTTAGAC-AGGGAATGAACTCC
* * * * ** *
15428655 GTATGCCTAAGTCAACCCACGAAACGAGCATACCGGCGCTCAGTCGGCCAGAAAGGTGGGATGCG
775 GTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
15428720 CAAGTC-AGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCT
840 CAAGCCGA-GGATCGATCGGGTCCCCCTCTACGTGCTCTCGATCC
* ** * * * * *
15428764 TGCTGCCGCAACCCCCGATCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTA-A----
** * * * * * * *
15428829 GAATGAACTCCGTATGACTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCT-CAGCCAGCCAGAG
61 G--CCAA--CC----GAC---G--AA---AC-GAGCGGGCGGGCGGGCACTAC-GCCGGCCAGAG
* ** * * ** * ****** * * * * *
15428893 GGGCGGGATGCGTAAGTC-TGAGCTCGGTCGGGTCCCCCTCTGCGTGCTA-TC-GATCCTGC-TA
108 AGGCGGGATGCACAAGCCGTG-GATCAATAGGGT-GGTAGGTGGGT-TTAGGCACAT-CTTCATA
*** * * ** ** * ** * ** ** *
15428954 CAACAACCCTCGGTCCGGT-CCGATCTTAGACTGAGAATGATCTCCGTATGCTTAAGCCAACCGA
169 TTTCTACCAT--G-CCAATGCC-AT-TT-TTCT--G---G--CT-TGTA-AATTCATACAATGGT
*** * *** * * ** * * * * ** ** * * ***
15429018 CGAAATGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGA-GAGGCGGGATGCGA--AAGC-CG
219 C-CCTTAAGCCTTC--ATGTG-AAG--TTTCAT-GGCAAGACGACTC-GTTTTCTATTTTTCACG
*** * ** ** * * * ** * * * ** ** *
15429079 -TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATT
276 ATTTTTGAA-A-CTTTTTA---CGGTTCAAG-ATTTTTTAAAATTT-TTTCA-G---A-AGGA-G
*** ** * * * *
15429143 TTTCTGGCTTGTAAA-TTCATACAATG-G-TCCCTT-TAGCCTTCATGTGAAGTT-TCATG-GCA
328 TTT-TGGC-CCCAAACTTGGTA-GATGTGAT-CCTTGTA---TT--T-T--TGTTGGCATGCACA
* ** * ** * * * * * * ** ***
15429202 AGACGACTC-GTTTTCT-ATTATTC-ATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAA
381 AAAAAATTCAG----CTAAAAACTCGAAG-TGTACAAGA--TTTT---G-TGACCATTTGAAAAA
* *** ** * * * * *
15429264 A-TTTTTTCA--AAAGCCA-TTT--TGGC--C---C--CAAACTTGGTAGACGTGATCCTTATAT
435 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT-GTA-A---AAT-CTCA-AA
** * ** *** * ** *** * *** * *
15429316 TTTTCTTGGAA-GGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACAATT
493 TGCTCTT-TAAGGGGGT--GTGAGTT---CTCGAGGTTTG-A-TG-A-GAGATAGGGGGCCAA--
* * ** ** ** * * * ***** ** *
15429380 TGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGC-TA-C-TG-GCAGCAAACCTGTAAAATCT
546 T---ATAAG-GGCCAAGTACCAG-CAC--CCATCGCACATCATGTGCA-CACACCCCCCGACCCC
** * *** * ** * * * *** * *
15429441 CAAAT-G-C---TCTTTAAGGGGGT--GTGA-GTTCT-CGAGGTTTGATGAGAGATAGGGGGCCA
603 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA----CGATG-GTG-T-CCCGACGA
* * * * * * * * * * ***
15429497 A-TATAA-G-GGC-CAAGTACCA-GCACCCATCGCACATCATGTGC-G-CACACCCCCGG-CCCC
661 AGAAAAATGCGGCACCAGCA-CATGC-CCGA--GCCCAGCATGTGCTGCCGCAACCTCGGTCTGA
* * ** * ** * ** *
15429554 CCCGATC----A-T-CG-A--AAC-CCCAATGC-T-GTC-GGTCAGGTTCTCCGGTGATG-GT--
722 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCC-GT-ATGCCTAA
** ** * ** * ** * * * *
15429603 GTC--CCGGTG-AA-GAAAAATGC-GGCAC-CAGCACATACCCGA-GCCCAGCATGTGCTA-CCG
785 GTCAACCCATGAAACG-AGCATGCGGGCGCTCAGC-C-GGCCAGAGGGGCGGGATGCGCAAGCCG
** * ** *
15429660 TA--A-CCTTC-AGT-CCAGTC--CGAT-CT-TAGA--C
847 -AGGATCGATCGGGTCCCCCTCTACG-TGCTCTCGATCC
** * * *
15429688 TG--G--G-AA----T-GAAC--TCCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGTC
1 TGCTGTCGCAACCCTTGGTCCGATCCG-AT-CTTAGACTGGGAATGAACTCAGTATGCCTAAGCC
* ** * * * * * *
15429741 AACCCATAAAACGAGCGCGCGGGC--GCTC-A-GTCGGCCAGAGGGGCGGGATGCATAAGCCGGG
64 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTG
** * ** * * * **
15429802 GATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATTCTGCTATGGCA-ACCCTCA-ATCTGGT-CCG
129 GATCAATAGGGT---GGT-AG-GTG--G--G--T-T--TA-GGCACATCTTCATAT-TTCTACC-
* ** ** * * * *** * * * **** *
15429864 AT-CTTAGACTAGGAATAAACTCCGTATGCTTAAGCCAACCGACGAAACAAACGGGCGGGCAGGC
177 ATGC-CA-A-T-GCCAT--TTTTC-T-GGCTT--G-TAA-ATTC-ATAC-AATGGTCCCTTAAGC
*** * ** *
15429928 AC-T-ATGTCGACCAGAGAGGCGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGAGTTTG
228 -CTTCATGT-G---A-AGTTTC--ATG-GCAAGAC---GACTCG-T----T--T-TCT-A-TTTT
* * * * * * *** * *
15429990 GCAC-ATCTTT-ATA-TTTCTACCGTGCCAATGCCATTTTTCT-GGCTTGTAAATTCATAGAATG
271 TCACGATTTTTGAAACTTTTTACGGT-TCAA-G--ATTTTT-TAAAATT-T--TTTC--AGAAGG
** * * ** * * * * *
15430051 -GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT-T-TTTATT-TT-TCATGA
326 AGT---TTTGGCC-CCA----AA-CTTGGTAG-ATG-TGA-TCCTTGTATTT-TTGTTGGCATG-
* ****** *** ** * * * ** *
15430111 TACGGTTCGGGATT-TTTTAAAATTTTTTCAAAG-GT---AG-TTTTG-GCCACAAACTTGGTAG
377 CAC--AAAAAAATTCAGCTAAAA---ACTCGAAGTGTACAAGATTTTGTG--AC-CATTTGAAAA
* ** ** * ** * * *
15430169 ACGTGAT--CC--TT--GTA-TTTTTGTTGGCATGC-A-CAAAAAAATTCAGCTAAAAACTCAAA
434 AAGTG-TCCCCATTTCAG-ACACTTTAATGGC-TACTAGC-AGCAAA-CCTG-TAAAATCTCAAA
* ** * ** * * ** * * *
15430225 -G-TGTACAA---GAT-T---TTCT-GACCATTTGA--A-A-AAAGTGTCCCCATTTAA--GACA
493 TGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCA
** * * * * * * ** * * *** * ** *
15430274 CTTTAACGGCTA-CTAGCAGCA-AACCTGT--A-A-A-ATCTCAAATGCTCTTTAAG--GG----
557 -AGTACCAGC-ACCCATC-GCACATCATGTGCACACACCCCCCGACCCCCCGAT-CGCCGGAACC
**** * * * ** * ** * ** ** * *
15430326 GTTGTG-AGTTC-TTGAGGTT-TGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTAGCAGCA
618 CCAATGCCG-TCGGTCAGGTTCT-CCGA-CGAT-GGTGTCCCGA-CGAA--GAAAAAT-GCGGCA
** * **** ** * * * **
15430387 CCCATCGCACAT-CATGTA-CGCA-CACCCCCT-CCAGCCCCCCCGATC-G--CCGAAACCCAAA
675 -CCA--GCACATGCCCG-AGCCCAGCATGTGCTGCC-GCAACCTCGGTCTGATCCG--A-TCTTA
* * * * ** * ** * * * *
15430445 TGCCGTCGGTTAGGTTCTCCG-ACGTCGGTGT-CCCGGGGAA-GAAAAATACGGCACTAGCAC-A
732 -GAC-TAGG-AATGAACTCCGTA--T-GCT-TAGACAGGGAATG--AACT-CCGTA-T-GC-CTA
* * * * ** * * *
15430506 TGCTCGAGCCCA-GCATA--TGC-TGCCGTAACCCTCGGTCTGGACTGATCTTAGACTGGGAATG
784 AG-TC-AACCCATG-AAACGAGCATG-CG-GGCGCTCAG-CCGG-C----C--AGA--GGG---G
* * * * * * ** * * **
15430567 AACTCTGTATGC-CTAAGTCAACCCACGAAACGAGCATGCAGGCG-CTCAGTCGACCAGAGGGGC
831 ----CGGGATGCGC-AAG----CCGA-GGATC--G-AT-C-GG-GTCCCCCTCTA-C-G-TGCTC
** *
15430630 GGGATGC
877 TCGATCC
* * * **** ** * * * ** * *
15430637 -GCAAGGTGGGGATTTGTTGGGTCCCCCTCTGCATGCTAAGAATCCGCTACTGCGACCCTCAGTT
1 TGC--TGT-CGCAACCCTT-GGT-CCGATCCG-AT-CTTAG-A-CTGGGAAT--GA-ACTC----
* *
15430701 CAGTCTAATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCAGG
50 ------------------------A----GTATGCCTAAGCCAACCGACGAAACGAGCGGGC---
* * * * * * ** *
15430766 TGGGCCGGTACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATTGATTGATAGGCTGGTAGGT
84 -GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGT
*
15430831 GGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCA-TTTTCTGGCTTGTAAATTCATAC
148 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
* * *
15430895 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGAGGACTCGTTTTCTATTTTTCATGAT
213 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
15430960 TTTTGAAACCTTTTACGGTTCAGGATTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACT
278 TTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
15431025 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTG
343 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
15431090 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
408 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
* *
15431155 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGGATGAGGGATAG
473 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAG
* * * *
15431220 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACATCCCCCGGCCCC
538 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGACCCC
* * * * * * ** *
15431285 CCTAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTGTCCTGGTGAAAAAAA
603 CC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAA
* * * ** * * *
15431350 ATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCCTGACCCGGTTCGATCTT
667 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTC-GGTCTGATCCGATCTT
* * * * *
15431415 AGACT-GTGAATGAACTTCATATTCCTAGACTA-GGAATGAACTCCATATGCCTAAGTCAACCCA
731 AGACTAG-GAATGAACTCCGTATGCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
15431478 CGAAACGAACGTGTGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG-GGATCGATCGG
794 TGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-G
* *
15431542 GGT-CCTCTCTGCGTGCTAC-CGATCC
858 GGTCCCCCTCTACGTGCT-CTCGATCC
* * * * * *
15431567 TGCTG-CTACAACCGTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCA-TATGCCTAAGCC
1 TGCTGTC-GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACT-CAGTATGCCTAAGCC
* * *
15431630 AACCCACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGC
64 AACCGACGAAACGAGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGGCGGGATGCACAAGC
* * * * * ** *
15431695 CGTGGATCGATATGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATACCAT
125 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
*
15431760 TTTTCTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
190 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
15431825 ACTCGTTTTCTATTTTTCATGA-TTTTGAACCTTTTTACGGTTCAGGATTTTTTTAAATTTTTTC
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
* * *
15431889 AGAAGGAGATTTT-GCCCCAAACATGGTAGACGTGATCATTGTATTTTT-TTGGCATGCACAAAA
320 AGAAGGAG-TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * ** *
15431952 AAATTCAGCCAAAAA-TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCAATTTC
384 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15432016 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
449 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
15432081 TTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
514 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
15432146 CACGTGCGCACACCCCTCCGACCGCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
579 CATGTGCACACACCCC-CCGACC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** *
15432211 GGCAATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
642 GACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
15432276 GTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
707 GCAA-CCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAA
* * ** * * *
15432341 CCCCGTATGCCTAAGTCAAGCCACAAAACGAGCGTGCGGGCACTCAGCC-ACCAGAGGGGTC-GG
771 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGG-CGGG
* * ** *
15432404 ATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTTTGTGCTGTCGATCC
835 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTCTCGATCC
** * ** * * * *
15432453 TGCTACCGTAACCCTCAGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATGCCTATGCCAA
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* * *
15432518 CCGACGAAACGAGCCGGTG-GGCGATCGGGCACTACGCCGGCCAGAGAGGCGGGATCCGCAAGTC
66 CCGACGAAACGAG-CGG-GCGG-G--CGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCC
* * * *
15432582 GGGGATCGATAGGGTGGTAGGAT-GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTCAT
126 GTGGATCAATAGGGTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
* * *
15432646 TTTT-TGGCCTGTAAGTTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACG
190 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15432710 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAA-TCTTTC
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
* *
15432774 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
320 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
15432839 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCA
385 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
15432904 GACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
450 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
15432969 TCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
515 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
15433034 ATGTGCGCACACCCCCTCGGCCCCCCCGATTGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
580 ATGTGCACACACCCCC-C-GACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
15433099 GCGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTG
643 ACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
15433164 TAACCCTTGGTCCGGTCCGATCTTAGACTTA-GAATGAGCTCCGTATGCTTAGACTGGGAATGAA
708 CAA-CCTCGGTCTGATCCGATCTTAGAC-TAGGAATGAACTCCGTATGCTTAGACAGGGAATGAA
** * * *
15433228 CTTAGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
771 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
15433293 TGCGCAAGCCGGGGATCG-GCTGGGTCCCCCTCTACGTGCTGTCGATCC
836 TGCGCAAGCCGAGGATCGATC-GGGTCCCCCTCTACGTGCTCTCGATCC
* ** * ** ** * * *
15433341 TACTACCACAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAAC-CCGTATACCTTAGCCAA
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* * * * * * *
15433405 CCGATGAAATGAGTGGGCGGGCCGGCACTACGCCGACGAGAGAGGCGGGATGCGCAAGCCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGA
* * * * *
15433470 TCGATAGGGTGGTTGGTGGGTTTGGGCACATCTTCTTATTTCTACCCTGCCAATGCCATTTTTCT
131 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
* * *
15433535 AGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
** * ** * **
15433600 TTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTTGAGATTTTTTAAATTTTTTTTGGAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGG
* * * * * *
15433665 ATTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGTATGCACAAAAAATTTCA
326 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
15433730 GCTAAAAACTCGAAGTGTACCAGATTTTGTGATCATTTGAAAAAAGTGT-CCCATTTCTGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
15433794 TTAATGGCTACTGGCAGCAAACCTATAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
456 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
15433858 GGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
521 GGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * ** * * *
15433923 GCACACCCCCCGGCTCCCCCTATCGCTAGAACCCCAATGTCG-CTGTCAGGTTCTCCAACGATGG
586 ACACACCCCCCGAC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGG
** * * * *
15433987 TGTCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGTAACCCT
650 TGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCT
* * * * ** *
15434052 CGATCCGATTCGATCTTAGACTGGGAATGAACTGTGTATGCTTAGACTGGGAATGAACTCCGTAT
714 CGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTAT
* * * * * * *
15434117 GCCTAAGTCAACCCACGAAATGAG-AGTGTGGGTGCTCAACCGACCAGAGGGGCGGGATGTGCAA
779 GCCTAAGTCAACCCATGAAACGAGCA-TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* **
15434181 GCCG-GTGATCGGTCGGGTCCCCCTCTGTGTGCTACT-GATCC
843 GCCGAG-GATCGATCGGGTCCCCCTCTACGTGCT-CTCGATCC
* * * * * * * * *
15434222 TGCT-ACTGTAA-CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACTA
1 TGCTGTC-GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
* * * * *
15434285 ACTGACGAAACGA----GCGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGCCATGG
65 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGG
* * * * *
15434346 ATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTGTC
130 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTC
* * *
15434411 TAGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
** * ** *
15434476 TTTTCTATTTTTCATAATTTTTGAAAC-TTTTAGGGTTCGGGATTTTTTAAATTTTTTTCAGAAG
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAG
** ** * * *
15434540 GAGTTTTGGCCCCAAACTTCTTAGACATGATCCTTGTATTTTTTTTGGCTTGCACAAAAAATTTC
325 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
15434605 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAAACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15434670 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCG
455 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * * *
15434735 AGGTTTGATGAGGGATAGGTGGCCAATATAAGTGCCAAATACCAGAACCCATCGCACATCATTTG
520 AGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * * *
15434800 CGTACACCCACCCGGCTCGCCCCGATCGTCGGACCCCCAATGCCGCCGGTCAGGTTCAT-CGGCG
585 CACACACCC-CCCGAC-C-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-TCCGACG
* * * * *
15434864 ATGGTGTCCCGACAAAGAAAAATGCGGCACCAGCCCATGCTCAAGCCCAGCATGTGCTGCCGTAA
646 ATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
** * *
15434929 CCCTCGGTCCAATCCGATCTTAGACT-GAGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
711 -CCTCGGTCTGATCCGATCTTAGACTAG-GAATGAACTCCGTATGCTTAGACAGGGAATGAACTC
* * * ** * **
15434993 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGTCGGCCAGAGGGGAAGGATGC
774 CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
15435058 GTAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGC-CGATCC
839 GCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCT-CTCGATCC
** * * ** *
15435103 TGCTACCACAACCCTTGGTCCGATCTGATCTTAGACTGCTAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* * * * * * *
15435168 CCGATGGAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGGGAGACGAGATGCGCAAGCCA
66 CCGACGAAACGAGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCG
* * * * * *
15435233 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCACATTTTTGCCATGCCAATGCAATTT
127 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
15435298 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
192 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
15435363 TCGTTTTCTATTTTTCATGATTTGTGAAACTTTTTACGGTTCGAGA--TTTTAAAATTTTTTCAG
257 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAG
15435426 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
322 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
15435491 TTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGA
387 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
15435556 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAAGGGGTGCGAGTTC
452 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
15435621 TCGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCAATCGCACATCTT
517 TCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
15435686 GTGCGCACACCACTCCCCGACCCCCCCGATCGTCGGAACACTAATGTCG-CTGGTCAGGTTCTCC
582 GT--GCACA-CACCCCCCGA-CCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* * * * ** * * * * *
15435750 GGCAAAGGTGTCCGGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGGCCAGCATGTCCTGTC
642 GACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
15435815 ACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAA
707 GCAA-CCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAA
* ** * **
15435880 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTTGGCCAGAGAGGCAAGA
771 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * *
15435945 TGCGTAAGCGGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTCAATCC
836 TGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTCTCGATCC
** * * * * * *
15435993 TATTG-CTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGTC-GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
* * * * *
15436057 ACCGACGAAATGAGCGGGCGGGAGGGCGGGCACTACGCCAGCCAGAGACGCAGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCC
* * * *
15436122 TTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATT
126 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
15436187 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
191 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** * *
15436252 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTATAAAATTTTTTCA
256 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCA
* ** *
15436317 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTAATCGC-T--AC------
321 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
15436373 -TGGCAGC---AAAC-C----TGT--AA-A-------ACC---TG--AAAAGGGTCCCTATTTCA
386 AT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
15436414 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGT
450 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
15436479 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATC
515 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
15436544 ATGTGCGCACACCACCCCTGGCCCCCCCGATCACCGAAACCCTAATGTCGTTGGTCAAGTTCTCC
580 ATGTGCACACACC-CCCC--GACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
15436609 GATGATGGTGTCCCGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGTTGCC
642 GACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * ** *
15436674 GTAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATGA
707 GCAA-CCTCGGTCT-GATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGA
* * ** * *
15436738 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAGCCAGCCAGAGGGGCGGG
770 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
** * * ** *
15436803 ATAAGTAAGCCGGGGATCGATCGCATCCCCCACTACGTGCTGC-CGATCC
835 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCT-CTCGATCC
* * * * * * *
15436852 TGCTGCCACAACCCTTGGTCC-AGTTCAATCGTAGACAGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGTCGCAACCCTTGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
* * * *
15436916 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGA---G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCC
* * * * *
15436981 GTGGATCGAGAAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATT
126 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
* *
15437046 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATCGCAAGACGA
191 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * * *** *
15437111 CTCGTTTTTTATTTTTCA-TAATTTTCAAAATGTTTTACGGTTGGGGATTTTATAAAATTTTTTC
256 CTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCAAGATTTTTTAAAATTTTTTC
* * *
15437175 AGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
320 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
15437240 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCA
385 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
15437305 GACACTTTAATGGCTACTGGCGGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
450 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
15437370 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACGAGCACCCATCGCACATC
515 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** * * *
15437435 ATGTGCGCACACCCCCCGGCCGCCATGATCGCCAGAACCCCAAAGCCG-CTTGTCAGGTTCTCCG
580 ATGTGCACACACCCCCCGACC-CCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * *
15437499 ACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATTCTCGAGCCCAGCATGTGCTAG-C
643 ACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCC
* * * * * *
15437563 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACTGTGAATGAA
707 GCAA-CCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAA
*
15437628 CTCCGTATGCCTAAGTCAACCCACGAAA
771 CTCCGTATGCCTAAGTCAACCCATGAAA
15437656 TGAGTGTGCG
Statistics
Matches: 9160, Mismatches: 1660, Indels: 1413
0.75 0.14 0.12
Matches are distributed among these distances:
857 3 0.00
858 16 0.00
859 556 0.06
860 144 0.02
861 1 0.00
862 403 0.04
863 247 0.03
864 105 0.01
865 4 0.00
866 2 0.00
867 1 0.00
868 3 0.00
869 2 0.00
870 1 0.00
871 4 0.00
872 5 0.00
873 5 0.00
874 6 0.00
875 17 0.00
876 148 0.02
877 236 0.03
878 117 0.01
879 20 0.00
880 74 0.01
881 477 0.05
882 92 0.01
883 212 0.02
884 225 0.02
885 984 0.11
886 696 0.08
887 629 0.07
888 715 0.08
889 516 0.06
890 884 0.10
891 178 0.02
892 83 0.01
893 3 0.00
894 9 0.00
895 7 0.00
896 4 0.00
897 4 0.00
898 12 0.00
899 8 0.00
900 11 0.00
901 21 0.00
902 7 0.00
903 4 0.00
904 5 0.00
905 11 0.00
906 15 0.00
907 66 0.01
908 14 0.00
909 13 0.00
910 14 0.00
911 20 0.00
912 18 0.00
913 6 0.00
914 40 0.00
915 14 0.00
916 10 0.00
917 8 0.00
919 8 0.00
920 11 0.00
921 9 0.00
922 9 0.00
923 1 0.00
924 13 0.00
925 7 0.00
926 18 0.00
927 13 0.00
928 13 0.00
929 11 0.00
930 16 0.00
931 12 0.00
932 3 0.00
933 9 0.00
934 17 0.00
935 14 0.00
936 6 0.00
937 9 0.00
938 24 0.00
939 15 0.00
940 11 0.00
941 10 0.00
942 8 0.00
943 14 0.00
944 25 0.00
945 32 0.00
946 12 0.00
947 31 0.00
948 23 0.00
949 14 0.00
950 29 0.00
951 26 0.00
952 29 0.00
953 16 0.00
954 32 0.00
955 13 0.00
956 18 0.00
957 10 0.00
958 3 0.00
959 20 0.00
960 30 0.00
961 15 0.00
962 16 0.00
963 28 0.00
964 22 0.00
965 22 0.00
966 14 0.00
967 7 0.00
968 15 0.00
969 15 0.00
970 19 0.00
971 11 0.00
972 8 0.00
973 3 0.00
974 6 0.00
975 13 0.00
976 12 0.00
977 1 0.00
978 3 0.00
979 1 0.00
981 1 0.00
982 10 0.00
983 7 0.00
984 1 0.00
985 2 0.00
986 1 0.00
988 4 0.00
989 1 0.00
990 2 0.00
993 2 0.00
994 1 0.00
995 5 0.00
996 12 0.00
997 4 0.00
998 1 0.00
999 1 0.00
1001 1 0.00
1002 27 0.00
1003 1 0.00
1005 3 0.00
1006 5 0.00
1007 1 0.00
1008 2 0.00
1009 1 0.00
1010 34 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
TGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGA
TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
ACACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGT
GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCG
GTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGC
CTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GAGGATCGATCGGGTCCCCCTCTACGTGCTCTCGATCC
Found at i:15428822 original size:26 final size:26
Alignment explanation
Indices: 15428793--15428844 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15428783 CCGATTCGAT
*
15428793 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15428819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15428845 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15428903 original size:185 final size:185
Alignment explanation
Indices: 15428579--15429007 Score: 570
Period size: 185 Copynumber: 2.3 Consensus size: 185
15428569 GCCCAGCATG
* * *
15428579 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGTGAATGAAGTCCGCATGCTTAGACTAG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTAG
* * * *
15428644 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACCGGCGCTCAGTCGGCCAGAAA
66 GAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAGCATACCGGCGCTCAGCCAGCCAGAAA
* * * *
15428709 GGTGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCT
131 GGCGGGATGCGCAAGTCAGAGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCC
* * * * * *
15428764 TGCTGCCGCAACCCCCGATCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTAG
* * * * **
15428829 GAATGAACTCCGTATGACTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGG
66 GAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAGCATACCGGCGCTCAGCCAGCCAGAAA
* * * *
15428894 GGCGGGATGCGTAAGTCTGAGCTCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
131 GGCGGGATGCGCAAGTCAGAGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCC
* ** * *
15428949 TGCTACAACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGATCTCCGTATGCTTA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTA
15429008 AGCCAACCGA
Statistics
Matches: 208, Mismatches: 36, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 208 1.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (185 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTAG
GAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAGCATACCGGCGCTCAGCCAGCCAGAAA
GGCGGGATGCGCAAGTCAGAGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCC
Found at i:15429710 original size:26 final size:26
Alignment explanation
Indices: 15429681--15429732 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15429671 CCAGTCCGAT
15429681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15429707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15429733 ACTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15431451 original size:26 final size:26
Alignment explanation
Indices: 15431414--15431467 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15431404 GGTTCGATCT
* *
15431414 TAGACTGTGAATGAACTTCATATTCC
1 TAGACTGTGAATGAACTCCATATGCC
15431440 TAGACTAG-GAATGAACTCCATATGCC
1 TAGACT-GTGAATGAACTCCATATGCC
15431466 TA
1 TA
15431468 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (26 bp):
TAGACTGTGAATGAACTCCATATGCC
Found at i:15432327 original size:26 final size:26
Alignment explanation
Indices: 15432298--15432350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15432288 CTGATCCGAT
*
15432298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
15432324 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
15432350 C
1 C
15432351 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:15433160 original size:887 final size:888
Alignment explanation
Indices: 15428764--15437867 Score: 11635
Period size: 890 Copynumber: 10.4 Consensus size: 888
15428754 CTGTCGATCT
* * * * *
15428764 TGCTGCCGCAACCCCCGATCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
15428829 GAATGAACTCCGTATGACTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-CCAGAGG
* * * * * * *
15428894 GGCGGGATGCGTAAGTCTGAGCTCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACAACA
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * * * *
15428959 ACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGATCTCCGTATGCTTAAGCCAACCGACGAAAT
195 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * *
15429024 GAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATCAATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
15429089 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTCTGGCTTG
325 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
*
15429154 TAAATTCATACAATGGTCCCTTTAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * *
15429219 TTATTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGCCA-TTT
455 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAG-GAGTTT
* * * * *
15429283 TGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTCTTGGAAGGCATAAAAAAATTCAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
15429348 AAACTTGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
15429413 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15429478 GATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
714 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
15429543 -CCCCCGGCCCCCCCGATCATCGAAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGGTGTCC
779 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCC
*
15429607 CGGTGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATG
844 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
15429652 TGCTACCGTAACCTTCAGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
1 TGCTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* ** * **
15429716 GGAATGAACTCCGTATGACTAAGTCAACCCATAAAACGAGCGCGCGGGCGCTCAGTCGGCCAGAG
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCACCAGAG
** * * ***
15429781 GGGCGGGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATTCTGCTATGGC
129 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCAC
** * * * * *
15429846 AACCCTCAATCTGGTCCGATCTTAGACTAGGAATAAACTCCGTATGCTTAAGCCAACCGACGAAA
194 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
** * * * *
15429911 C-A---AACGGGCGGGCAGGCACTATGTCGACCAGAGAGGC-GGATGCGCAAGCCGTGGATCGAT
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * * *
15429971 AGGGTGGTAGGTGAGTTT-GGCACATCTTTATATTTCTACCGTGCCAATGCCATTTTTCTGGCTT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15430035 GTAAATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
15430100 ATTTTTC---A----TG--A-----TACGGTTCGGGATTTTTTAAAATTTTTTCA-AAGGTAGTT
454 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGG-AGTT
*
15430150 TTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
15430215 AAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
15430280 CGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
15430345 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTACGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
15430410 ACCCCCTCCAGCCCCCCCGATCGCCGAAACCCAAATGCCGTCGGTTAGGTTCTCCGACG-TCGGT
778 A-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT-GGT
* * * * *
15430474 GTCCCGGGGAAGAAAAATACGGCACTAGCACATGCTCGAGCCCAGCATA
840 GTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
15430523 TGCTGCCGTAA-CC-C--T-CG----G----T---CT--G---G-ACT--G-AT-CTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
15430562 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGTCGACCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCACCAGAGG
** ** * * ** **
15430627 GGCGGGATGCGCAAGGTGGGGATTTGTTGGGTCCCCCTCTGCATGCT-AAGAATCC-GCTACTGC
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCG-ATCCTGCTACCAC
* * * ** *
15430690 GACCCTCAGTTC-AGTCTAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
194 AACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * * *
15430753 ACGAGTGGGCAGGTGGGCCGGTACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATTGATTGA
258 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* **
15430818 TAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCA-TTTTCTGGCT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
* *
15430882 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGAGGACTCGTTTTC
388 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
15430947 TATTTTTCATGATTTTTGAAACCTTTTACGGTTCAGGATTTTTTAAATTTTTTTCAGAAGGAGTT
453 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTT
*
15431012 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTA
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15431077 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
15431142 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
15431207 GGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* ** * *
15431272 ATCCCCCGGCCCCCCTAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTGTC
778 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTC
* * * *
15431337 CTGGTGAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATG
843 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * * * * * * *
15431383 TGCTGCCGCAACCC-CTGACCCGGTTCGATCTTAGACTGTGAATGAACTTCATATTCCTAGACTA
1 TGCTGCCGTAACCCTC-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
15431447 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGTTCAGCCGGCCAGAG
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-ACCAGAG
* * * ** * *
15431512 GGGCGGGATGCACAAGCC-GGGATCGATCGGGGT-CCTCTCTGCGTGCTACCGATCCTGCTGCTA
129 GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCA
* * * * * *
15431575 CAACCGTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
193 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
15431640 ACGAGCGGGCGGGCGGGCGAGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
258 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * * ** *
15431705 TATGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATACCATTTTTCTGGCT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
*
15431770 TTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
388 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
15431835 TATTTTTCATGA-TTTTGAACCTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAGAT
453 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAG-T
* * *
15431899 TTT-GCCCCAAACATGGTAGACGTGATCATTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCC
517 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* ** *
15431962 AAAAA-TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCAATTTCAGACACTTTA
582 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
15432026 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGT
647 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
15432091 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCA
712 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
15432156 CACCCCTCCGACCGCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCAATGGTG
777 CACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTG
15432221 TCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
841 TCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
15432269 TGCTGCTGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
15432334 GAATGAACCCCGTATGCCTAAGTCAAGCCACAAAACGAGCGTGCGGGCACTCAGCCACCAGAGGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCACCAGAGGG
** ** ** **
15432399 GTC-GGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTTTGTGCTGTCGATCCTGCTACCGTA
131 G-CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * * * *
15432463 ACCCTCAGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATGCCTATGCCAACCGACGAAAC
195 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * ** * * *
15432528 GAGCCGGTGGGCGATCGGGCACTACGCCGGCCAGAGAGGCGGGATCCGCAAGTCGGGGATCGATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
15432593 GGGTGGTAGGAT-GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTCATTTTT-TGGCCT
325 GGGTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15432656 GTAAGTTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
15432721 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAA-TCTTTCAGAAGGAGTTT
454 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
*
15432785 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
15432850 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15432915 GGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15432980 GATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
714 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
15433045 CCCCCTCGGCCCCCCCGATTGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGTC
779 CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTC
* * *
15433110 CCGGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATG
843 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ** *
15433156 TGCTGCTGTAACCCTTGGTCCGGTCCGATCTTAGACTTAGAATGAGCTCCGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * *
15433221 GAATGAACTTAGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-ACCAGAGG
* *
15433286 GGCGGGATGCGCAAGCCGGGGATCGG-CTGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCAC
130 GGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCAC
* ** * * *
15433350 AACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAAC-CCGTATACCTTAGCCAACCGATGAAA
194 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
15433414 TGAGTGGGCGGGC---C-GGCACTACGCCGACGAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * * * * *
15433475 AGGGTGGTTGGTGGGTTTGGGCACATCTTCTTATTTCTACCCTGCCAATGCCATTTTTCTAGCTT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15433540 GTAAGTTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * ** *
15433605 ATTTTTCATAAATTTTGAAACTTTTTACGGTT-TGAGATTTTTTAAATTTTTTTTGGAAGGATTT
454 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTT
* * * *
15433669 TTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGTATGCACAAAAAATTTCAGCTA
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
15433734 AAAACTCGAAGTGTACCAGATTTTGTGATCATTTGAAAAAAGTGT-CCCATTTCTGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
15433798 TGGCTACTGGCAGCAAACCTATAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
15433862 TGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * **
15433927 ACCCCCCGGCTCCCCCTATCG-CTAGAACCCCAATGTCG-CTGTCAGGTTCTCCAACGATGGTGT
778 ACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGT
* *
15433990 CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATG
842 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * **
15434037 TGCTGCTGTAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTGTGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
15434102 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGTGCTCAACCGACCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-ACCAGAGG
* * * * ***
15434167 GGCGGGATGTGCAAGCCGGTGATCGGTCGGGTCCCCCTCTGTGTGCT-ACTGATCCTGCTACTGT
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTACCAC
* * * * * *
15434231 AA-CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACTAACTGACGAAA
194 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
15434295 CGA--------GCGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGCCATGGATCGAT
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * * *
15434352 AGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTGTCTAGCTT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15434417 GTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
15434482 ATTTTTCATAATTTTTGAAAC-TTTTAGGGTTCGGGATTTTTTAAATTTTTTTCAGAAGGAGTTT
454 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
** * * * *
15434546 TGGCCCCAAACTTCTTAGACATGATCCTTGTATTTTTTTTGGCTTGCACAAAAAATTTCAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
15434611 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAAACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15434676 GGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * * * *
15434741 GATGAGGGATAGGTGGCCAATATAAGTGCCAAATACCAGAACCCATCGCACATCATTTGCGTACA
714 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
15434806 CCCACCCGGCTCGCCCCGATCGTCGGACCCCCAATGCCGCCGGTCAGGTTCAT-CGGCGATGGTG
779 CCC-CCCGGC-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-TCCGGCGATGGTG
*** * * *
15434870 TCCCGACAAAGAAAAATGCGGCACCAGCCCATGCTCAAGCCCAGCATG
841 TCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
15434918 TGCTGCCGTAACCCTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* ** **
15434983 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGTCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCACCAGAGG
** * ** ** *
15435048 GGAAGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACA
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * ** * *
15435113 ACCCTTGGTCCGATCTGATCTTAGACTGCTAATGAACTCCGTATGCCTAAGCCAACCGATGGAAC
195 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
15435178 GAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGGGAGACGAGATGCGCAAGCCATGGATCGATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * * *
15435243 GGGTGGTAGGTGGGTTTAGGCGCATCTTCACATTTTTGCCATGCCAATGCAATTTTTCTGGCTTG
325 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
15435308 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
15435373 TTTTTCATGATTTGTGAAACTTTTTACGGTTC-GAGA--TTTTAAAATTTTTTCAGAAGGAGTTT
455 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTT
*
15435435 TGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
15435500 AAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAAT
584 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
15435565 GGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTCT
649 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
15435630 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCAATCGCACATCTTGTGCGCACA
714 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
15435695 CCACTCCCCGACCCCCCCGATCGTCGGAACACTAATGTCG-CTGGTCAGGTTCTCCGGCAAAGGT
779 -C-C-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGT
* * * *
15435759 GTCCGGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGGCCAGCATG
840 GTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** *
15435808 TCCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *** *
15435873 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTTGGCCAGAGA
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCACCAGAGG
** * * * * * ** * ***
15435938 GGCAAGATGCGTAAGCGGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTCAATCCTATTGCTGTA
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * * *
15436003 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
195 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
15436068 GAGCGGGCGGGAGGGCGGGCACTACGCCAGCCAGAGACGCAGGATGCGCAAGCCTTGGATCGATA
260 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
15436133 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTG
325 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
15436198 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** *
15436263 TTTTTCACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTATAAAATTTTTTCAGAAGGAGTTT
455 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTT
** * *
15436327 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTAATCGC-T--AC-------TGGCAGC--
519 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGCTA
* *
15436380 -AAAC-C----TGT--AA-A-------ACC---TG--AAAAGGGTCCCTATTTCAGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
15436424 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
15436489 TGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * * * * **
15436554 ACCACCCCTGGCCCCCCCGATCACCGAAACCCTAATGTCGTTGGTCAAGTTCTCCGATGATGGTG
778 ACC-CCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTG
* * *
15436619 TCCCGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATG
841 TCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * **
15436667 TGTTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGG
1 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
15436732 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAGCCAGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-CCAGAGG
** * * ** * * * *
15436797 GGCGGGATAAGTAAGCCGGGGATCGATCGCATCCCCCACTACGTGCTGCCGATCCTGCTGCCACA
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * * * * *
15436862 ACCCTTGGTCC-AGTTCAATCGTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
195 ACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
15436926 CGAGCGGACGGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAG
259 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * *
15436991 AAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTT
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTT
* *
15437056 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATCGCAAGACGACTCGTTTTTT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * ** *
15437121 ATTTTTCAT-AATTTTCAAAATGTTTTACGGTTGGGGATTTTATAAAATTTTTTCAGAAGGAGTT
454 ATTTTTCATGATTTTTGAAACT-TTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTT
* * *
15437185 TTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTA
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15437250 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
15437315 TGGCTACTGGCGGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
15437380 TGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACGAGCACCCATCGCACATCATGTGCGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* ** * * * * *
15437445 ACCCCCCGGCCGCCATGATCGCCAGAACCCCAAAGCCG-CTTGTCAGGTTCTCCGACGATGGTGT
778 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGT
** * * *
15437509 CCCGACGAAGAAAAATGTGGCACCAGCACATTCTCGAGCCCAGCATG
842 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
15437556 TGCTAG-CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACTG
1 TGCT-GCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
15437620 TGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA--GT------G-T--G----C-GA--
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCACCAGAGG
* * * * ** *
15437667 -----GATGTGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCA
130 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACA
* * * * * * * * * * *
15437727 ACCTTCAGTTCGGTTCGATCTTGGACTGGGAATGAACTTCATATGTCTAAGCCAATCGACGAAAT
195 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
15437792 GAACGGGCGAGCGGGCGGGCACTACGCAC-GCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGAT
260 GAGCGGGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
15437856 AGGGTGGTAGGT
324 AGGGTGGTAGGT
15437868 TCGGGATTTT
Statistics
Matches: 7189, Mismatches: 862, Indels: 353
0.86 0.10 0.04
Matches are distributed among these distances:
843 34 0.00
844 28 0.00
845 108 0.02
846 2 0.00
847 28 0.00
848 115 0.02
849 34 0.00
850 1 0.00
851 1 0.00
853 1 0.00
855 4 0.00
857 1 0.00
858 14 0.00
859 566 0.08
860 246 0.03
861 7 0.00
862 287 0.04
863 4 0.00
865 169 0.02
866 2 0.00
867 5 0.00
868 276 0.04
869 3 0.00
870 5 0.00
871 104 0.01
872 4 0.00
873 7 0.00
875 3 0.00
876 143 0.02
877 225 0.03
878 103 0.01
879 8 0.00
880 56 0.01
881 482 0.07
882 201 0.03
883 242 0.03
884 181 0.03
885 471 0.07
886 585 0.08
887 636 0.09
888 407 0.06
889 444 0.06
890 710 0.10
891 171 0.02
892 65 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCACCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAA
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCG
GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:15434116 original size:26 final size:26
Alignment explanation
Indices: 15434066--15434118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15434056 CCGATTCGAT
**
15434066 CTTAGACTGGGAATGAACTGTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15434092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15434118 C
1 C
15434119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15434986 original size:26 final size:26
Alignment explanation
Indices: 15434947--15434999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15434937 CCAATCCGAT
*
15434947 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
15434973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15434999 C
1 C
15435000 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15435866 original size:26 final size:26
Alignment explanation
Indices: 15435837--15435889 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15435827 CCGATCCGAT
*
15435837 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
15435863 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
15435889 C
1 C
15435890 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:15437624 original size:26 final size:26
Alignment explanation
Indices: 15437585--15437634 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15437575 CTGGTCCGAT
*
15437585 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
15437611 CTTAGACTGTGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15437635 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:15442040 original size:860 final size:860
Alignment explanation
Indices: 15440084--15445271 Score: 7019
Period size: 860 Copynumber: 6.0 Consensus size: 860
15440074 TGAACTCCAT
* * * * *
15440084 GTGCGAGCGCTCAGCTGGCCAGAGGGGCGAGATGCGCAGGCCGGGGATCGGCCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
** * * *
15440149 ATGTGCTGTCAATCCTGCTGTCATAACCCTCGGTCT-AGTTTGATCTTAGACTGGGAATGAACTC
66 GCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAACTC
* * *
15440213 TGTATGCCTAAGCCAACCGACG-AA--A-TGAACGGGCGAGCGGGCACTACGCCGGCCAGAGAGG
130 CGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
*
15440274 CGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
195 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* **
15440339 CATGCTAATGCCATTTTTCTATTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
260 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
15440404 TTCATGGCAAGACGACTCATTTTATATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTT
325 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
*
15440469 TTTTAAATTTTTTCAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
390 TTTAAAATTTTTTCAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
15440534 ATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
455 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
15440599 TCCCAATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAG
520 TCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
15440664 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCTAATAT-AGGGACCAAGTACCAGCAC
585 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCAC
* * * * * * **
15440728 CCA-CTGCACATTATAT-CGGCACACCCCCTTGGACCCCCTGATCGCCGGCACCCCAATGCCACC
649 CCATC-ACACATCATGTGC-GCACACCCCCTCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTC
* *
15440791 GATCAGGTTCTCTGGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC
711 GATCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC
*
15440856 AGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
776 AGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
15440921 AGTCAACCCACGAAACGAGC
841 AGTCAACCCACGAAACGAGC
** * * *
15440941 GTGCGGGTACTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCT
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
*
15441006 GCGTAG-TGTCGATCCTGCTGTCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTC
66 GCGT-GCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC
* * * *
15441070 CGTATGCCTAAGCCAACTGATGAAAAGAGTGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGG
130 CGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * * * *
15441135 CAGGATGCGCAAGTCGTGGATCGATATGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
195 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15441200 CTTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCATGTGAAGT
260 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
*
15441264 TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTT
325 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
*
15441329 TTTTAAATTTTTTCAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
390 TTTAAAATTTTTTCAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
15441394 ATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
455 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
15441459 TCCCAATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
520 TCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
15441524 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGACCAAGTACCAGCACC
585 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * **
15441589 CACCGCACATCATAT-CGGCACACCCCCTTGGACCCCCCGATCGCCGGCACCCCAATGCCACCGA
650 CATCACACATCATGTGC-GCACACCCCCTCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGA
* *
15441653 TCAGGTTCTCTGGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAG
713 TCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAG
* *
15441718 CATGTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
778 CATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
15441783 TCAACCCACGAAACGAGC
843 TCAACCCACGAAACGAGC
** * * * *
15441801 GTGCGGGTACTCAACCGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCT
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
*
15441866 GCGTAG-TGTCGATCCTGCTGTCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTC
66 GCGT-GCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC
*
15441930 CGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGG
130 CGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * * *
15441995 CGGGATGCGCAAACCGTGGATCGATATGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
195 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
** *
15442060 GTTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCATGTGAAGT
260 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * ** * *
15442124 TTAATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCCAAACATTTTACGGTTCGGGATTT
325 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
* *
15442189 TTTAAAATTTTTTTAGATGGAGTTTTGG-CCTGAAACTTGGCAGACGTGATCCTTGTATATTTT-
390 TTTAAAA-TTTTTT-CA-GGAGTTTTGGCCCT-AAACTTGGTAGACGTGATCCTTGTAT-TTTTG
* * * *
15442252 TTGGCATGCATAAAACAATTCAGGTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
450 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
15442317 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
515 AAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
15442382 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
580 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
15442447 GCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCCGATCGCTGGAACCCCAATGTCGT
645 GCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGT
* * **
15442512 CGGTCAGGTTCTCTGACGATGGTGTCTCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCC
710 CGATCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCC
* *
15442577 CAGCATGTGCTGTCGTAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATGCTT
775 CAGCATGTGCTGCCGCAA----C---CC--T-CGA---T-C-C--GG--T---C-T-G-AT-CTT
* * * *
15442642 AGACTGGGAATGACCTCTGTATGCCTAAGTCAACCGACGAAATGAGC
814 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
15442689 GTACAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * * **
15442754 GTGTGCTATCGATCTTGCTG-CTGAAACCCTTGGTCCGATCCAATCTTAGACT-GGAATGAACTC
66 GCGTGCTGTCGATCCTGCTGTC-GTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC
* * * * *
15442817 CGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGACGGGCCGACACTACGTCGGCCAGAGAGG
130 CGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
*
15442882 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
195 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15442947 CATGCCAATGCCATTTTTCTAGCCTGTTAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
260 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
15443012 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTC-AGGATT
325 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATT
* *
15443076 TTTT-AAATTTTTTCAGAAGGAGTTTTGGTCCC-AAACTTGGTAGATGTGATCCTTGTATTTTTT
389 TTTTAAAATTTTTTC---AGGAGTTTTGG-CCCTAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
15443139 TTCGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
450 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
15443204 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACTTGTAAAATCTCAAATGCTCT
515 AAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
15443269 TTAAGTGTGTCTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCG
580 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
15443334 GCACCTATCACACATCATGTGTGCACACCCCCTCGGGCCCCTCGATCGTCGGAACCCTAATGCCG
645 GCACCCATCACACATCATGTGCGCACACCCCCTC-GGCCCCCCGATCGCCGGAACCCCAATGCCG
* * * * * * *
15443399 TCGATCAGGTTCTCCGGCGATAGTGTCCTGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGC
709 TCGATCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGC
* * *
15443464 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCC
774 CCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
*
15443529 TAAGTCAACCCACGTAACGAGC
839 TAAGTCAACCCACGAAACGAGC
** * * * *
15443551 GTATGGGCGCTCAGCCGACCAGAGGGGCGGAATGCGCAAGCCGGGGATC-GACAAGGTCCCCCTC
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTC
** ** * * *
15443615 TGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTC-CAGCCTGATCTTAGACTGGGAATGAACT
65 TGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAACT
* * * * ** *
15443679 CCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAAGCGGGCACTACACCGGCCAGAGAG
129 CCGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
15443744 GCGGGATGCGCAAGTCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
194 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
15443809 CCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
259 CCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* *
15443874 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATT
324 TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
* *
15443939 TTTTAAAATTTTTTCAGAAAGAGTCTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
389 TTTTAAAATTTTTTCAG---GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
15444004 TGGCATGCACAAAAACATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGATCATTTGAAAAA
451 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
15444069 AGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
516 AGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
15444134 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAG
581 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
** * * * *
15444199 TGCCCATCATACATCATGTGCGCACACCCCC-CGGCCCCTCCGATTGGCGGAACCCCAATACCGT
646 CACCCATCACACATCATGTGCGCACACCCCCTCGGCCCC-CCGATCGCCGGAACCCCAATGCCGT
* * * * * ** *
15444263 CGGTCAGGTTCAC-CACGATGGTGTCCGGACGAAGAAACACGCGGCACCAGCAAATGCCTGAGCC
710 CGATCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCC
15444327 CAGCATGTGCTGCCGCAACCTTGGGTCCTGTCTGATCATAGACTGGGAATGAACTCCGTATGCTT
775 CAGCATGTGCTGCCGCAA-C------CC--TC-GATC-----C--GG--T---CT--G-AT-CTT
*
15444392 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
814 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
15444439 GTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCTCTCGCT
1 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* ** ** * *
15444504 GCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCC
66 GCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCC
15444569 GTATGCCTAAGCCAACCGATC-AAAC-----GA---GCGGGCGGGCACTACGCCGGCCAGAGAGG
131 GTATGCCTAAGCCAACCGA-CGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * *
15444625 CAGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGC
195 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15444690 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATTGTCCTTTAAGCCTTCATGTGAAGT
260 CATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
15444755 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATT
325 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATT
* *
15444819 TTTTAAAATTTTTTCAAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
389 TTTTAAAATTTTTTC---AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * **
15444884 AGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGAGTATTTGAAAAA
451 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
15444949 AATGTCCTC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
516 AGTGTCC-CAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
15445013 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
580 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
15445078 GCGCCCATCACACATCATGTGCGCACATCCCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCT
645 GCACCCATCACACATCATGTGCGCACA-CCCCCTCGG-CCCCCCGATCGCCGGAACCCCAATGCC
* * * * *
15445143 GTTGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAACACAT-TCTCGA
708 GTCGATCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCT-GA
* * ** * *
15445207 GCGCAGCATGTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAAGGAACTTCGTATG
772 GCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
15445272 TCGTAACGGT
Statistics
Matches: 3901, Mismatches: 329, Indels: 202
0.88 0.07 0.05
Matches are distributed among these distances:
857 152 0.04
858 6 0.00
860 923 0.24
861 145 0.04
862 308 0.08
863 539 0.14
864 262 0.07
866 3 0.00
868 1 0.00
869 5 0.00
871 5 0.00
872 6 0.00
873 5 0.00
874 3 0.00
875 2 0.00
876 3 0.00
877 2 0.00
878 2 0.00
879 6 0.00
880 473 0.12
881 10 0.00
882 36 0.01
883 64 0.02
884 3 0.00
885 1 0.00
886 12 0.00
887 423 0.11
888 498 0.13
889 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (860 bp):
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
GCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
ATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTT
TTAAAATTTTTTCAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCACACATCATGTGCGCACACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCA
GGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCAT
GTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGC
Found at i:15444401 original size:26 final size:26
Alignment explanation
Indices: 15444365--15444415 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15444355 TGTCTGATCA
15444365 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15444391 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15444416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15446275 original size:16 final size:16
Alignment explanation
Indices: 15446251--15446313 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
15446241 GGATTTTTTT
*
15446251 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
15446267 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
15446284 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
15446299 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
15446314 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:15446321 original size:33 final size:33
Alignment explanation
Indices: 15446256--15446324 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
15446246 TTTTTAGGAC
*
15446256 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
15446289 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
15446322 TTT
1 TTT
15446325 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:15446856 original size:38 final size:38
Alignment explanation
Indices: 15446804--15446901 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
15446794 GATCAACGCT
* * *
15446804 GGTCC-GGCGGTCTGATCGGTTCGACGGTTGGATCGGC
1 GGTCCGGGCGATCTGACCGGTTCGACGGTCGGATCGGC
* * * *
15446841 GGTTCGGGCGATCTGACCGATTCGGCGGTCGGATCGGT
1 GGTCCGGGCGATCTGACCGGTTCGACGGTCGGATCGGC
*
15446879 GGTCCGGGCAATCTGACCGGTTC
1 GGTCCGGGCGATCTGACCGGTTC
15446902 AATCCGATCC
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
37 4 0.08
38 46 0.92
ACGTcount: A:0.10, C:0.26, G:0.41, T:0.23
Consensus pattern (38 bp):
GGTCCGGGCGATCTGACCGGTTCGACGGTCGGATCGGC
Found at i:15447503 original size:17 final size:17
Alignment explanation
Indices: 15447473--15447517 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
15447463 TATTTTTTTA
*
15447473 TTTTTGTTTCTGTTTT-G
1 TTTTT-TTTTTGTTTTGG
15447490 TCTTTTTTTTTGTTTTGG
1 T-TTTTTTTTTGTTTTGG
15447508 TTTTTTTTTT
1 TTTTTTTTTT
15447518 ACGTCGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.82
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTGG
Found at i:15447800 original size:15 final size:15
Alignment explanation
Indices: 15447752--15447805 Score: 76
Period size: 14 Copynumber: 3.6 Consensus size: 15
15447742 TTCTGTCTTA
15447752 TTTTTGTTTTGTTTTT
1 TTTTTG-TTTGTTTTT
15447768 TTGTTTG-TTGTTTTT
1 TT-TTTGTTTGTTTTT
15447783 TTTTTGTTTG-TTTT
1 TTTTTGTTTGTTTTT
15447797 TTTTTGTTT
1 TTTTTGTTT
15447806 TGTTAAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
14 17 0.47
15 13 0.36
16 2 0.06
17 4 0.11
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (15 bp):
TTTTTGTTTGTTTTT
Found at i:15447807 original size:15 final size:14
Alignment explanation
Indices: 15447752--15447809 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 14
15447742 TTCTGTCTTA
*
15447752 TTTTTGTTTTGTTT
1 TTTTTTTTTTGTTT
*
15447766 TTTTGTTTGTTGTTT
1 TTTT-TTTTTTGTTT
15447781 TTTTTTTGTTTGTTT
1 TTTTTTT-TTTGTTT
15447796 TTTTTTGTTTTGTT
1 TTTTTT-TTTTGTT
15447810 AAATATTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 7 0.18
15 30 0.79
16 1 0.03
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTGTTT
Found at i:15448046 original size:49 final size:49
Alignment explanation
Indices: 15447980--15448512 Score: 726
Period size: 49 Copynumber: 10.9 Consensus size: 49
15447970 ACAGAAAAGG
* *
15447980 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15448029 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-TGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15448076 GCTCCTCTCAATAGAGGCTCCACAACTTTAAAAATCTCATCTGG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
15448124 GCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15448172 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---GAAAAA
* *
15448224 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCTC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGGAAAAA
* * * * *
15448274 ACTTCTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTGG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
15448322 GCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
* *
15448371 GCTCCTCTCAACAGAGGCTCGACAACTTTAAAATTCTCATCTTGG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TGGAAAAA
*
15448420 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCATCT-GAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
*
15448469 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCTCATCTG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATCTCATCTG
15448513 TTTTCAAATT
Statistics
Matches: 434, Mismatches: 32, Indels: 35
0.87 0.06 0.07
Matches are distributed among these distances:
47 58 0.13
48 115 0.26
49 168 0.39
50 47 0.11
52 33 0.08
53 9 0.02
54 4 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.26
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
Found at i:15460615 original size:16 final size:16
Alignment explanation
Indices: 15460591--15460621 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15460581 GATTTTTTTT
15460591 AGGACTTTGGATTTCA
1 AGGACTTTGGATTTCA
*
15460607 AGGATTTTGGATTTC
1 AGGACTTTGGATTTC
15460622 GGGGGGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.42
Consensus pattern (16 bp):
AGGACTTTGGATTTCA
Found at i:15462720 original size:19 final size:18
Alignment explanation
Indices: 15462695--15462740 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
15462685 GGACTGTGTA
*
15462695 TTTTTTTATTTT-TTTTC
1 TTTTTTTTTTTTGTTTTC
*
15462712 TTCTTTTTTTTTTGTTTTG
1 TT-TTTTTTTTTTGTTTTC
15462731 TTTTTTTTTT
1 TTTTTTTTTT
15462741 ACGTCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.68
19 6 0.24
ACGTcount: A:0.02, C:0.04, G:0.04, T:0.89
Consensus pattern (18 bp):
TTTTTTTTTTTTGTTTTC
Found at i:15462724 original size:16 final size:16
Alignment explanation
Indices: 15462697--15462740 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
15462687 ACTGTGTATT
*
15462697 TTTTTATTTTTTTTCTTC
1 TTTTT-TTTTTGTT-TTC
*
15462715 TTTTTTTTTTGTTTTG
1 TTTTTTTTTTGTTTTC
15462731 TTTTTTTTTT
1 TTTTTTTTTT
15462741 ACGTCGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.50
17 7 0.29
18 5 0.21
ACGTcount: A:0.02, C:0.05, G:0.05, T:0.89
Consensus pattern (16 bp):
TTTTTTTTTTGTTTTC
Found at i:15462982 original size:17 final size:16
Alignment explanation
Indices: 15462960--15463006 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 16
15462950 CTGTCTTATT
15462960 TTTGTTTTGTTTTTTTG
1 TTTGTTTT-TTTTTTTG
15462977 TTTGTTGTTTTTTTTTG
1 TTTGTT-TTTTTTTTTG
15462994 TTTGTTTTTTTTT
1 TTTGTTTTTTTTT
15463007 GTTTTGTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.24
17 20 0.69
18 2 0.07
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (16 bp):
TTTGTTTTTTTTTTTG
Found at i:15462987 original size:14 final size:13
Alignment explanation
Indices: 15462958--15463009 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
15462948 TTCTGTCTTA
15462958 TTTTTGTTTTGTT-
1 TTTTT-TTTTGTTG
*
15462971 TTTTTGTTTGTTG
1 TTTTTTTTTGTTG
15462984 TTTTTTTTTGTTTG
1 TTTTTTTTTG-TTG
15462998 TTTTTTTTTGTT
1 TTTTTTTTTGTT
15463010 TTGTTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 6 0.17
13 16 0.46
14 13 0.37
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTGTTG
Found at i:15463010 original size:14 final size:14
Alignment explanation
Indices: 15462958--15463010 Score: 72
Period size: 14 Copynumber: 3.6 Consensus size: 14
15462948 TTCTGTCTTA
15462958 TTTTTGTTTTGTTTT
1 TTTTTG-TTTGTTTT
15462973 TTTGTT-TGTTGTTTT
1 TTT-TTGT-TTGTTTT
15462988 TTTTTGTTTGTTTT
1 TTTTTGTTTGTTTT
15463002 TTTTTGTTT
1 TTTTTGTTT
15463011 TGTTAAATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
14 19 0.54
15 14 0.40
16 2 0.06
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (14 bp):
TTTTTGTTTGTTTT
Found at i:15463259 original size:49 final size:49
Alignment explanation
Indices: 15463185--15463718 Score: 708
Period size: 49 Copynumber: 10.9 Consensus size: 49
15463175 ACAGAAAGGG
* *
15463185 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15463234 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-TGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15463281 GCTCCTCTCAATAGAGGCTCCACAACTTTAAAAATCTCATCT-GAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15463329 GCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
*
15463377 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---GAAAAA
* * *
15463429 ACTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCTC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGGAAAAA
* * * * *
15463479 ACTTCTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* * *
15463528 GCTCCTCTCAATAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
* *
15463577 GCTCCTCTCAACAGAGGCTCGACAACTTTAAAATTCTCATCTTGG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TGGAAAAA
*
15463626 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCATCT-GAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
* * *
15463675 ACTCCTCTCAACAGAGGCTCCATAACTTTAAAATTTCTCATCTG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATCTCATCTG
15463719 TTTTCAAATT
Statistics
Matches: 434, Mismatches: 34, Indels: 33
0.87 0.07 0.07
Matches are distributed among these distances:
47 56 0.13
48 84 0.19
49 197 0.45
50 52 0.12
52 32 0.07
53 9 0.02
54 4 0.01
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
Found at i:15475840 original size:16 final size:16
Alignment explanation
Indices: 15475819--15475877 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
15475809 TTTTTTGGAC
15475819 TTTGGATTTCAAGGAT
1 TTTGGATTTCAAGGAT
** *
15475835 TTTGGATTTCGGGGGGT
1 TTTGGATTTC-AAGGAT
15475852 TTTGGATTT-AATGGAT
1 TTTGGATTTCAA-GGAT
15475868 TTTGGGATTT
1 TTT-GGATTT
15475878 TTAGGGGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 16 0.47
17 18 0.53
ACGTcount: A:0.17, C:0.03, G:0.32, T:0.47
Consensus pattern (16 bp):
TTTGGATTTCAAGGAT
Found at i:15477099 original size:12 final size:12
Alignment explanation
Indices: 15477084--15477163 Score: 54
Period size: 12 Copynumber: 6.7 Consensus size: 12
15477074 ATAGGGTGGC
*
15477084 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
15477096 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
15477108 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
* * *
15477120 TCGTTGGGTAAC
1 TGGTCGGGTAAT
* *
15477132 TGGTCGGGGAGT
1 TGGTCGGGTAAT
*
15477144 TGGTTGGGTAAT
1 TGGTCGGGTAAT
15477156 TGGTCGGG
1 TGGTCGGG
15477164 GCAGTTCGGT
Statistics
Matches: 47, Mismatches: 19, Indels: 4
0.67 0.27 0.06
Matches are distributed among these distances:
11 1 0.02
12 45 0.96
13 1 0.02
ACGTcount: A:0.15, C:0.07, G:0.46, T:0.31
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:15477164 original size:24 final size:24
Alignment explanation
Indices: 15477084--15477169 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
15477074 ATAGGGTGGC
* **
15477084 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
* * *
15477108 TGGTCGGAGAGTTCGTTGGGTAAC
1 TGGTCGGGGAGTTGGTTGGGTAAT
15477132 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
15477156 TGGTCGGGGCAGTT
1 TGGTCGGGG-AGTT
15477170 CGGTGTCGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
24 48 0.92
25 4 0.08
ACGTcount: A:0.15, C:0.08, G:0.45, T:0.31
Consensus pattern (24 bp):
TGGTCGGGGAGTTGGTTGGGTAAT
Found at i:15477227 original size:4 final size:4
Alignment explanation
Indices: 15477208--15477258 Score: 52
Period size: 4 Copynumber: 13.0 Consensus size: 4
15477198 CCTTATTTTC
* * *
15477208 GTTT CGTTT TTTT GTTT G-TT GTTT -TTT GTTT GTTT GTTT TTTT ATTT
1 GTTT -GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT
15477255 GTTT
1 GTTT
15477259 TGTTAAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
3 6 0.15
4 29 0.74
5 4 0.10
ACGTcount: A:0.02, C:0.02, G:0.18, T:0.78
Consensus pattern (4 bp):
GTTT
Found at i:15477233 original size:15 final size:15
Alignment explanation
Indices: 15477213--15477257 Score: 65
Period size: 14 Copynumber: 3.0 Consensus size: 15
15477203 TTTTCGTTTC
15477213 GTTTTTTTGTTTGTT
1 GTTTTTTTGTTTGTT
15477228 G-TTTTTTGTTTGTTT
1 GTTTTTTTGTTTG-TT
*
15477243 GTTTTTTTATTTGTT
1 GTTTTTTTGTTTGTT
15477258 TTGTTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 11 0.41
15 6 0.22
16 10 0.37
ACGTcount: A:0.02, C:0.00, G:0.18, T:0.80
Consensus pattern (15 bp):
GTTTTTTTGTTTGTT
Found at i:15477241 original size:18 final size:16
Alignment explanation
Indices: 15477214--15477258 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 16
15477204 TTTCGTTTCG
15477214 TTTTTTTGTTTGTTGTT
1 TTTTTTTGTTTGTT-TT
15477231 TTTTGTTTGTTTGTTTT
1 TTTT-TTTGTTTGTTTT
*
15477248 TTTATTTGTTT
1 TTTTTTTGTTT
15477259 TGTTAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 7 0.27
17 9 0.35
18 10 0.38
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (16 bp):
TTTTTTTGTTTGTTTT
Found at i:15478233 original size:26 final size:26
Alignment explanation
Indices: 15478204--15478253 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15478194 GTCCGATCTA
*
15478204 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGCATGCTT
*
15478230 AGACTGGGAATGAGCTCCGCATGC
1 AGACTGGGAATGAACTCCGCATGC
15478254 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGCATGCTT
Found at i:15479975 original size:26 final size:26
Alignment explanation
Indices: 15479946--15480024 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15479936 CCGGTCCAAT
*
15479946 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15479972 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15479998 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15480024 C
1 C
15480025 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15480899 original size:26 final size:26
Alignment explanation
Indices: 15480863--15480912 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15480853 CTGGTCTGAT
15480863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15480889 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15480913 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15481789 original size:26 final size:26
Alignment explanation
Indices: 15481753--15481805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15481743 CCGGTTCGAT
*
15481753 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15481779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15481805 C
1 C
15481806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15482153 original size:890 final size:890
Alignment explanation
Indices: 15477329--15483891 Score: 8885
Period size: 891 Copynumber: 7.4 Consensus size: 890
15477319 GGTGTCTACA
* * * *
15477329 CTGTATGCTTAGACAGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * * *
15477394 GCTCAGCTGGTTAGAGGGGCGGGATGCGTAAGTCGGGGATCGGTCGGGACCCCCTC-GACGTGCT
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG-CGTGCT
* * ** *
15477458 GCCGATCTTGCTGCCGCAACCCTCGATTTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCC
130 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
** * * *
15477523 TAAGCCAAAAGACGAAACGAGCGAGCGGGCAGGCAGGCACTACGCCGGCC-AGAGAGGCGGGATG
195 TAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATG
* * *
15477587 CGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTTTGCCGTGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
* **
15477652 ATGCCATTGTTTCTGGCTTGTAAGTTTGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
325 ATGCCATT-TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
15477717 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTCAA
389 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
* * *
15477782 ATGTTTTCAGAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
454 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
15477847 CACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGT
519 CAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGT
15477912 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
582 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
15477977 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCC
647 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
15478042 ATCGCACATCGTGTACGCACA-CCCCCTGTCCCCCCC-ATCGCCGGAACCCCAATGCCGTCGGTC
712 ATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
** * * * *
15478105 AGGTTCTCCGGTGATGGTGTCCCGGCTAAGAAAAATACGGCACCACCACAT-ACTCGAGCCCAGT
777 AGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGC-CGAGCCCAGC
* * *
15478169 ATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTAAGACTGGGAATGAACT
841 ATGTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACT
* * * * *
15478220 CCGTATGCTTAGACTGGGAATGAGCTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCGGAC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
15478285 GCTCAGTCGGCCAGAGGGG-GGAGATGCGCAAGCTGGGGATCGGCCGGGTCCCTCTCTGCGTGCT
66 GCTCAGCCGGCCAGAGGGGCGG-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * *
15478349 GTCGATCCTGCTGCCGCAACCCTTGGACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
130 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
15478414 TAAGCCAACCGACG-AA--A-----TGGGCGGGCGGGCACTACGCC-GACTAGAGAGGCGGGATG
195 TAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATG
* *
15478470 CGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTGCCATGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
* * * * *
15478535 ATGCCATTTTTTTTGGCTTGTAAATTCAAAGAATGGTCCCTTAAACCTTCATGTGAAGTTTCATA
325 ATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
15478600 GCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
389 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
* * *
15478665 ATTTTTTTAGAAGGAGTTTGGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATG
454 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * **
15478730 CACAAAACAATTCAGCAAAAAACTGGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTTG
519 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
15478795 CCATTTTAGACACTTTAAT-GCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
584 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
15478859 GTGTGAGTTCTCAAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCA
649 GTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGAGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * * *
15478923 TCGCACATCATGTAAGTACACCCCCCGGGTCCCCCCC-ATCGCCGAAACCCCAATGTCGCCGATC
713 TCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * *
15478987 AGGTTCTCCGACAATGGTGTCCCGACGAAGAAAAATATGGAACCAGCACATGCCCGAGCCCAGCA
777 AGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCA
15479052 TGTGCTGCCGCAA-CC-C--T-C-G--G----T---C------TG-A-T
842 TGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACT
* * *
15479078 CTG-AT-CTTAGACTGGGAATGAACTTCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGT
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
15479141 GCACAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * *
15479206 TCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * * **
15479271 AAGCCAA-TCGATGAAATGGGCAGGCAGGCAGGCGAGCACAACGTCGG-CTAGAGAGGCGAAATG
196 AAGCCAACT-GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATG
* * *
15479334 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTATGCCATGCCA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
15479399 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
325 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* *
15479464 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGAAAA
390 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
* * * *
15479529 TTTTTTCAGAAAGAGTTTTAGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTTTTGGCATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
15479594 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCC
520 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
15479659 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
585 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
15479724 TGTGAGTTCTCAAGGTTTGATGAGGGATA-GAGGGCCAATCTAAGGGCCAAGTACCAGCACCCAT
650 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGA-GGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
15479788 CGCACATCATGTGCGCACA-CCCCCTGGTCCCCCCC-ATCGCCGGAACCCCAATGTCGCCGGTTA
714 CGCACATCATGTGCGCACACCCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * *
15479851 GGTTCTCCGACAATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACAT-GCTCGAGCACAGCA
778 GGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGC-CGAGCCCAGCA
15479915 TGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
842 TGTGCTGCCGCAACCCTCGGTCCGG--------T---C-------G--------AT-CTTAGACT
15479980 GGGAATGAACT
880 GGGAATGAACT
15479991 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * **
15480056 GCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTATGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * *
15480121 CCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
15480186 AAGCCAACTGACAAAATGAGTGGGTGGGCGGGTGGGCACTACGCC-GACTAGAGTGGCGGGATGC
196 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATGC
*
15480250 GCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
*
15480315 TGCCATTTTTCTGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
326 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* ** * * *
15480380 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCAGAATTTTTTTAAAT
391 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
* ** * * *
15480445 TTTTTCAGAAAGAGTTTTGGATCCAAACTTGGCAGATGTGATCCTTGTATTTTTCTTGGCATGCA
456 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
15480510 CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
521 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
15480575 ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
586 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
15480640 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCG
651 GTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
15480705 CACATCATGTGCGCACACCCACCTCGGCCCCCCCGATCGTCGGCACCCCAATGCCGTCGGTCAGG
716 CACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * *
15480770 TTTTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACAT-GCTCGAGCCCAGCATG
780 TTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGC-CGAGCCCAGCATG
* * * *
15480834 TGCTGCTGCACCCCTCGTTCTGGTCTGATCTTAGACTGGGAATGAACT
844 TGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACT
* * **
15480882 CCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTATGGGC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
15480947 GCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * *
15481012 CCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCAATCTCAGACTGGGAATAAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
15481077 AAGCCAACTGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGTCGACC-AGAGAGGCGGGATGC
196 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATGC
* *
15481141 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
15481206 TGCCGTTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGC
326 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * *
15481271 AAGACGACTCATTTTTTATTTTTCACGA-TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAA
391 AAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCAGGATTTTTTAAAA
* *
15481335 TTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
15481400 ACAAAAAAATTGAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCC
520 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
15481465 CATTTCAGACACTTTAGTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
585 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
15481530 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCATGTACCAACACCCATC
650 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
15481595 GCACATCATGTGTGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
715 GCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * * * * *
15481660 GTTCTCCGACGAAGTTGTGCCGGTGAA-AAAAATGCGGCACCAGCACATGGCCAAGCCCAGCATG
779 GTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATG
15481724 TGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACT
844 TGCTGCCGCAACCCTCGGTCCGG-TCGATCTTAGACTGGGAATGAACT
15481772 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
15481837 GCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCTGTCGGGTCCCCCTCTGTGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * *
15481902 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATATTAGACTGGGAATGAACTTCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
15481967 AAGCTAACTGACGAAACGAGTGGGCGGACGGGCGGGCACTACGCCGGCCT-GAGAGGCGAGATGA
196 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATGC
* * *
15482031 GCAAGCCGTGGACCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
15482096 TGCCATTTTTCTGGCTTGTAAATT-AGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
326 TGCCATTTTTCTGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * *
15482160 CAAGACGACTCGATTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAA
390 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
15482225 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
455 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
15482290 ACAAAAATCATTCACCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCC
520 ACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
15482355 TCATTTCATAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
584 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
15482420 GTGTGAGTTCTGAAGGTTTGATGAGGGATA-GAGGGCCAATATAAGGGCCAAGTACCAGTACCCA
649 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGA-GGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
15482484 TCGCACATTATGTGCGCACGCCCCCCCGG-CCCCCCGATTGTCGGAACCCCAATGCAGTCGGTCA
713 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * * * * *
15482548 GGTTCTTCGCCGATGGTGTCCCAGCGAAGAAAAATACGGCACCACCACATGCCCGAGCCTAGCAT
778 GGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCAT
* *
15482613 GTGCTACCGCAA-AC-C--T-CGG--G--C-----C--GG--T---C-
843 GTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACT
* * ** * * *
15482639 C--AAT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATTAGCATCCGGGT
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
15482701 GCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTGGGGTCCCTCTCTGTGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
** * * * * * *
15482766 CCGATCCCACTACTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** *
15482831 AAGCTAACCGATGAAACGAGCGGGCGACCGGGCGGGCACTACGTCGG-CTAGAGAGGC-GGATGC
196 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATGC
* * *** *
15482894 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGTGTCCCAA
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
15482959 TGCCATTTTTTTGGCTCGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
326 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* ** * * *
15483024 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGAATTTTTAAAAT
391 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
* ** * *
15483089 TTTTTTAGAATTAGTTTTGGCACCAAACTT-TTAAGACGTGATCCTTGTATTTTTGTTGGCATGC
456 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
15483153 ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCC
520 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
15483218 CATTTCAGACACTTTAGTGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
585 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
15483283 TGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCCATC
650 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
15483348 GCACATCATGTGTGCACACCCCACCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAG
715 GCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * * * * *
15483413 GTTCTCCGGCGATGTTGTGCCGGTGAA-AAAAATGCGGCACCAGCACATGGCCAAGCCCAGCATG
779 GTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATG
*
15483477 TGCTGCCGCAA-CCTGCGGTCCGGTCTGATCTTAGATTGGGAATGAACT
844 TGCTGCCGCAACCCT-CGGTCCGGTC-GATCTTAGACTGGGAATGAACT
* *
15483525 CTGTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
15483590 GCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * * *
15483655 CCGATCCTACTGCCGCAACCCCTCGGTCCAGTCTGATATTAGACTAGGAATGAACTTCGTATGCC
131 CCGATCCTGCTGCCGCAA-CCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
** * * * *
15483720 TAAGCTGACTGACGAAACGAGTGCGCGGGTGGGCGGGCACTACGCCGGCC-AGAGAGGCGAGATG
195 TAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATG
* * *
15483784 CGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCTA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
* *
15483849 ATGCCATTTTTCTGGCATGTAAATTCGTACAATGGTCCCTTAA
325 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
15483892 AACGAACGTG
Statistics
Matches: 5011, Mismatches: 534, Indels: 254
0.86 0.09 0.04
Matches are distributed among these distances:
856 174 0.03
857 6 0.00
858 3 0.00
859 1 0.00
860 2 0.00
862 192 0.04
863 653 0.13
864 479 0.10
865 5 0.00
866 1 0.00
867 3 0.00
868 5 0.00
869 1 0.00
871 2 0.00
873 4 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 1 0.00
880 123 0.02
881 39 0.01
882 145 0.03
883 270 0.05
884 2 0.00
885 4 0.00
886 2 0.00
888 3 0.00
889 177 0.04
890 691 0.14
891 1217 0.24
892 4 0.00
900 2 0.00
902 1 0.00
905 1 0.00
906 1 0.00
909 1 0.00
911 2 0.00
912 1 0.00
913 4 0.00
914 3 0.00
915 664 0.13
916 11 0.00
917 108 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTAGAGAGGCGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
TCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACT
Found at i:15484155 original size:316 final size:317
Alignment explanation
Indices: 15483574--15484207 Score: 916
Period size: 316 Copynumber: 2.0 Consensus size: 317
15483564 TCAACCCACG
* ** * *
15483574 AAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
1 AAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGGTCGAGT
*
15483639 CCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCCTCGGTCCAGTCTGATATTAGACTAGGA
66 CCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCCTCGGTCCAGTCTGATATTAGACTAGGA
* ** * * * *
15483704 ATGAACTTCGTATGCCTAAGCTGACTGACGAAACGAGTGCGCGGGTGGGCGGGCACTACGCCGGC
131 ATGAAATTCGTATGCCTAAGCCAACAGACGAAACGAGCGCGCGGGCGGGCGGGCACTACCCCGGC
*
15483769 CAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCAT
196 CAGAGAGGCGAGATGCGCAAGCCGTGGATCAATAGGGTAGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
15483834 ATTTCTGCCGTGCTAATGCCATTTTTCTGGCATGTAAATTCGTACAATGGTCCCTTA
261 ATTTCTACCATGCCAATGCCATTTTTCTGGCATGTAAATTCATACAATGGTCCCTTA
* * * *
15483891 AAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGTGCAACCCGGGGATTGGTCGAGT
1 AAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGGTCGAGT
* * * * *
15483956 CCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAA-CTCTCGGT-CAGGT-TCGATCTTAGACTGG
66 CCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCCTCGGTCCA-GTCT-GATATTAGACTAG
* *
15484018 GAATGAAA-TCTGTATGCCTAAGCCAACAGATGAAACGAGCGGGCGGGCGGGCGGGCACTACCCC
129 GAATGAAATTC-GTATGCCTAAGCCAACAGACGAAACGAGCGCGCGGGCGGGCGGGCACTACCCC
* * *
15484082 GGCCAGAGAGGTGAGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTT
193 GGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCAATAGGGTAGTAGGTGGGTTTAGGCACATCTT
*
15484147 CATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
258 CATATTTCTACCATGCCAATGCCATTTTTCTGGCATGTAAATTCATACAATGGTCCCTTA
15484207 A
1 A
15484208 GCCTTCATGT
Statistics
Matches: 281, Mismatches: 33, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
315 5 0.02
316 189 0.67
317 87 0.31
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.22
Consensus pattern (317 bp):
AAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGGTCGAGT
CCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCCTCGGTCCAGTCTGATATTAGACTAGGA
ATGAAATTCGTATGCCTAAGCCAACAGACGAAACGAGCGCGCGGGCGGGCGGGCACTACCCCGGC
CAGAGAGGCGAGATGCGCAAGCCGTGGATCAATAGGGTAGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACCATGCCAATGCCATTTTTCTGGCATGTAAATTCATACAATGGTCCCTTA
Found at i:15484743 original size:26 final size:26
Alignment explanation
Indices: 15484714--15484766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15484704 TCGATCCGAT
*
15484714 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15484740 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15484766 C
1 C
15484767 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15486432 original size:26 final size:26
Alignment explanation
Indices: 15486403--15486455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15486393 CCGATCTGAT
15486403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15486429 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15486455 C
1 C
15486456 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15487319 original size:26 final size:26
Alignment explanation
Indices: 15487290--15487342 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15487280 TCGATCCGAT
*
15487290 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15487316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15487342 C
1 C
15487343 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15487800 original size:891 final size:883
Alignment explanation
Indices: 15485643--15488164 Score: 3726
Period size: 891 Copynumber: 2.8 Consensus size: 883
15485633 CGACCAGAGG
* *
15485643 GGATCGATCGAGTCCCCTTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCTAAT
1 GGATCGATCGGGTCCCC-TCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
* * * * * * *
15485708 CTTAGACTAGAAATGAACTCCATATACCTAAACCAACCGACGAAACGAACGGGCAGACGGGCGGG
65 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAAGGGCGGACGGGCGGG
* *
15485773 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
130 CACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
* *
15485838 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTAGCTTGTAAATTCATACAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
15485903 CTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
15485968 CTTTTTACGGTTTGGGATTTTTTAAAAGTTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
325 CTTTTTACGG-TTCGGATTTTTTAAAA--TTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
15486033 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
387 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15486098 TTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
452 TTTTGTGACCATTTGAAAAAAGGGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15486163 GTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
516 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
15486228 ATATAAGGTCTAAGTAGCAGCACCCATCGCACATCATGAGAG--CA---CA---CCCCCCGATCA
581 ATATAAGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCAGGCCCCCCCGATCG
* ** * **
15486285 TCGGAACCCCAATACCGTAGGTCAGGTTCT-CGACGATGGTGTCTCGGTGAAGAAAAATACGGCA
645 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * *
15486349 CCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGG
710 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGG
* * *
15486414 AATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGC
775 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACC
* *
15486479 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAACCCGG
840 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAACCCGA
* * * * ** * * *
15486523 GGATTGGTCGGGTTCCCCTCTGCGTGCTACCGCTCTTGCTGCCGTAACTCTCGGTCAGGTCCGAT
1 GGATCGATCGGG-TCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
* * * *
15486588 CTTAGACTGGGAATGAAATCTGTATGCCTAAGCCAACCGATGAAACG--A--GCGGGCGGGCGGG
65 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAAGGGCGGACGGGCGGG
* * *
15486649 CACTAC-CCAGGCCAGAGAGGCGAGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
130 CACTACGTCA-GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
* * *
15486713 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGTTTGTAAATTCATACAATGGTC
194 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
15486778 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AA
259 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15486842 ATCTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCTAAACTTGGTAG
324 A-CTTTTTACGGTTCG-GATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * *
15486907 ACGTGATACTTGTGTTTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTCAAAGAGTACAAG
386 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15486972 ATTTTGTGACCATTTCAAAAAAGGGTCCCGATTTCAGACACATTAATGGCTACTGGCAGCAAACC
451 ATTTTGTGACCATTTGAAAAAAGGGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
15487037 AGTAAAATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCC
515 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
*
15487102 AATATAACGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCTAATGGCCCCCCCG
580 AATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--A-GGCCCCCCCG
* * * **
15487167 ATCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGATGATGGTGTCCCGACGAAGAAAAATGT
641 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATAC
* * *
15487232 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTTCGATCCGATCTTAGAT
706 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGAC
15487297 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
771 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
15487362 AACCGTGCGGGTGCTCAGCCGGTCAGAGGGGCGGGATGCGCAAGCCGA
836 AACCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAACCCGA
* * * **
15487410 GGATCGATCGGGTCCCCATCTACGTGCTGCCGATCCTGCTACCACAACCCTTAGTCCGGTCCAAT
1 GGATCGATCGGGTCCCC-TCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
*
15487475 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAAAGGGCGGACGGGCGGG
65 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAAGGGCGGACGGGCGGG
* * *
15487540 CACTACGTCAGCTAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
130 CACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
* * *
15487605 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGAAAATTCATAGAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
15487670 CTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
15487735 CTATTTACGGTTCAGGATTTTTTTAAAATTTTTTAGAAGGTGTTTTGGCCCCAAACTTGGTAGAC
325 CTTTTTACGGTTC-GGA-TTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
15487800 GTGATCCTTGTATTTTTGTTGGCATGCGCAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAG
388 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15487865 TTTGTGACCATTTGAAAAAAGTGTTGCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
453 TTTGTGACCATTTGAAAAAAG-GGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15487930 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
517 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
*
15487995 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCCGATC
582 TATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCAGG-CCCCCCCGATC
15488060 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTG-CGATGGTGTCCCGACGAAGAAAAATACGG
644 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGGTGTCCCGACGAAGAAAAATACGG
*
15488124 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
708 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
15488165 GTATGACTAA
Statistics
Matches: 1461, Mismatches: 149, Indels: 54
0.88 0.09 0.03
Matches are distributed among these distances:
874 9 0.01
875 244 0.17
876 212 0.15
877 2 0.00
880 88 0.06
881 5 0.00
882 1 0.00
886 40 0.03
887 275 0.19
889 3 0.00
890 107 0.07
891 445 0.30
892 30 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GGATCGATCGGGTCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAAGGGCGGACGGGCGGGC
ACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGGGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCAGGCCCCCCCGATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACCGTGCGG
GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAACCCGA
Found at i:15489021 original size:26 final size:26
Alignment explanation
Indices: 15488992--15489044 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15488982 TCGATCCGAT
*
15488992 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15489018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15489044 C
1 C
15489045 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15491598 original size:26 final size:26
Alignment explanation
Indices: 15491562--15491614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15491552 CCGATTCGAT
*
15491562 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15491588 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15491614 C
1 C
15491615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15492493 original size:26 final size:26
Alignment explanation
Indices: 15492457--15492507 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15492447 AGTCCGATCT
15492457 TAGACTGGGAATGAACTCTGCATGCA
1 TAGACTGGGAATGAACTCTGCATGCA
*
15492483 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGCATGC
15492508 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGCATGCA
Found at i:15493644 original size:890 final size:889
Alignment explanation
Indices: 15489932--15495172 Score: 6734
Period size: 889 Copynumber: 5.9 Consensus size: 889
15489922 GATCGATCGA
* * * * *
15489932 GTCCCCTTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCTA-ATCTTAGACTAG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATTCGATC-AGATCTTAGACTAG
* * * * * * * *
15489996 AAATGAACTCCGTATACCTAAACCAACCGACGAAACGAACGGGCAGACGGGTGGGCACTACGTCG
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* *
15490061 GCTAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
130 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
15490126 ATATTTCTGCCATGCCAATGCCATTTTTTTGGATTGTAAATTCATACAATGGTCCTTTAAGCCTT
195 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
15490191 CATGTGAAGTTTCACGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGA
260 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
*
15490256 TTTGGGATTTTTTAAAAGTTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
325 TTCGGGATTTTTTAAAA--TTTTTTA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
15490321 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
387 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
15490386 ATTTGGAAACAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
452 ATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
15490450 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGT
516 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
15490515 CCAAGTAGCAGCACCCATCGCACATCATGAGAGCACA----------C-CCCCCGATCATCGATA
581 CCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCCCCGCCCCCGATCGTCGAAA
* * ** *
15490569 CCCCAATGCCGTCGGTCAGGTTC-TCGGCGATGGTGTCTCGGTGAAGAAAAATGCGGCACCAGCA
646 CCTCAATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCA
* *
15490633 CATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
711 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
** * * *
15490698 CTCCATATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCG
776 CTCTGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAAAGAGCGTGCG
*
15490762 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
840 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGG
*** * ** * * * * *
15490812 GTCCCCCTCTGTTTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATTCGATCAGATCTTAGACTAGG
* ** * * *
15490877 AATGAGCTCCGTATGCCTAAGCCAATTGACAAAACGAGCGGGCGGGCGGGCGGGCGGGCAATACA
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACG
* * *
15490942 CCGGCCAGAGGGGTGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
127 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
15491007 TCCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
192 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
15491072 CTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTGTGAAACTTTTTA
257 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
*
15491137 AGGTTCGGGATTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
322 CGGTTCGGGATTTTTTAAAATTTTTT--AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
15491201 TTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAGCTTGAAGTATACAAGATTTTGTGA
385 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
15491266 CCATTTGAAAAAACTGTCCCTATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGT---A--
450 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
15491326 --AAAT-CTC---AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
515 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * **
15491385 GCCAAGTACGAGCACCCATCGCACATCATGTGCACGCACCC-CCCGACC-CCCCCGATCGTCGAA
580 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCCCCGCCCCCGATCGTCGAA
* * ** * * * *** *
15491448 ACCCCATTGCCACCGGTCAGGTTCTTTGACGATGGTGTCCCGGTAAAGAAAAATACGGCAACAGC
645 ACCTCAATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGC
* * ** *
15491513 ACATGCCCGAACCCAGCATGTGCTGCCGTAACCCTTAGTCCGAT-TCGATCTTAGACTGGGAATG
710 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATG
* * *
15491577 AACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA-AGCGCG
774 AACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA-AGAGCGTG
*** * *
15491641 AAAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG-TCGG
838 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GG
* ** * * * * *
15491693 ATCCCCCTCTACGTGCTGCCGATCCTACTATCGCAACCCTCGGCTTGGTTC-GATCTTAGACTGG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTC-GATTCGATCAGATCTTAGACTAG
* * * * * *
15491757 GAATGAACTCCGCATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGAGCGGGCATTACGCCA
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
*
15491822 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
130 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
15491887 ATATTTCTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTT
195 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
15491952 CATGTGAAGTTTCATGGCAATATGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGG
260 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* *
15492017 TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTG
325 TTCGGGATTTTTTAAAATTTTTT-A-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
15492082 TATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGATCA
388 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15492147 TTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCA
453 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * ** *
15492212 AATGCCCTTTAAGGGGGTGTGAGTTCTTGATGTTCGATGAGATATAGGGGGCCAATATAAAGGCC
518 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
15492277 AAGTACCAGTACCCATCGCACATCATTTGTGGACACCCGCCCTCCCGGCCCCATCGATCGCCGGA
583 AAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCC-CCCCGCCCC--CGATCGTCGAA
* * * * *
15492342 A-CTCTAAGGCCGTCAGTCAGGTTCACCGGGGATGGTGTCCCGACGAAGAAAAAT--GTGAACCA
645 ACCTC-AATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACG-GCACCA
* * * * * *
15492404 GCACATTCTCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
708 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * *
15492469 GAACTCTGCATGCATAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACA-AGCAT
773 GAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA-AGAGCGT
* * * *
15492533 GCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGAGGATCGGCCGG
837 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGG
* * * * * *
15492586 GACCCCCTCTACGTGCTACCGATCCTGCTGCCATAACCCTCG-GTCTGGTCAGATCTTAGACTAG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATTC-GATCAGATCTTAGACTAG
*
15492650 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* *
15492715 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCC
130 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
15492780 ATATTTCTGCCACGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
195 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* **
15492845 CAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGG
260 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
** *
15492910 TTCGGGATTTTTTTTAATTTTTT-TAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTA
325 TTCGGGATTTTTTAAAATTTTTTAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
15492973 ATTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATT
390 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
15493038 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAATATCTCAAG
455 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
15493103 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAA
520 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
15493168 GTACCAGCACCCATCCCACATCATGTGTGCACACCCGCCCCCCCCGGGCCCCCGATTGTCGAAAC
585 GTACCAGCACCCATCGCACATCATGTGTGCACACCCG-CCCCCCC--GCCCCCGATCGTCGAAAC
* * * *
15493233 CTCAATGCCGTCGGTCAGGTTCATCGGTGATGGTGTCCCGACGAAGAAAAATGCGACACTAGCAC
647 CTCAATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCAC
* * ** *
15493298 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCTTCAATCCGGTCTGATCTTAGATTGGGAATGAAC
712 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * *
15493363 T-TCGTATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAACGCACGAAAAGTGCGTGCGG
777 TCT-GTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGG
* * * *
15493427 GCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGGCTGG
841 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGG
* * * * *
15493476 GTCCCCTTTTACGTGCTGCCGATTCTACTGCCGCAACCCTCAATTCGATCAGATCTTAGACTAGG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATTCGATCAGATCTTAGACTAGG
* * * * *
15493541 AATAAACTCCGTATGCCTAAACCAACCGATGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGG
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGG
* * * * ** *
15493606 CCAGAGTGGCGGGATTCGCAAGCCGTGGATCAATAGGGTGGTAGGTGTGTTTAGGCATTTTTTCA
131 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
15493671 TATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTC
196 TATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
15493736 ATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGAT
261 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * *
15493801 TTGGGATTTTTGAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
326 TCGGGATTTTTTAAAATTTTTT--AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
15493866 ATTTTTTTTGGCTTGCACAAAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
389 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
15493931 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAA
454 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
15493996 ATGCTCTTTAAGGGGTTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCCATATAAGGGCCA
519 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* ** * * *
15494061 AGTACCAGCACCCATCGCACATCATGTGCGCACAGCCC-CCGACCC-CCCTCGTTCGTCGGAACC
584 AGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCGCCCCCCCGCCCCCGATCGTCGAAACC
*** * * * * ** * *
15494124 -CAATGCTACCGATCAGGTTCTTTGGCGATGGTGTCCCTATTAGGAAAAATATGGCACCAGCACA
648 TCAATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACA
* * * * * *
15494188 TGCCAGAGCCTAGCATGTGTTGCCGTAACCCTCGGTCC-GTCGGATCTTAGACTGGGTATGAACT
713 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * ** * * *
15494252 CCGTATGCTTAGATTCAGAATCAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGC
778 CTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGC
* *
15494317 GCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG-TCGG
843 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GG
* * * * * * * * *
15494364 GTCCCCCTTTGCGTGCTGTCGATCCTACTGTCACAA-CCTATGATACAATCTGATCTTAGACTGG
1 GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT-CGATTCGATCAGATCTTAGACTAG
* * ** * * *
15494428 GAATTAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGATGGGTGGGAACTATGCCG
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* * *
15494493 GCCAGAGAGGTGGGATGCGCAAGCCGTGGTTCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
130 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
15494558 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTAATACATTGGTCCCTTAAGCCTT
195 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
15494623 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAGTTTTTACGG
260 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
** * *
15494688 TTAAAGG-TTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCGCAAACTTGGTAGATGTGATCCTT
325 TT-CGGGATTTTTTAAAATTTTTT--AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
15494752 GTATTTTTTTTTGGCATGCACAAAAAAATTAAGCTAACAACTCGAAGTGTACAAGATTTTGTGAC
387 GTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
15494817 AATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATC-
451 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
15494881 CTAAATGCACTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAACG
516 C-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
15494946 GACGAGTACCAACACCCATCGCACATCATGTGCGCACACCCGTCCCCTGGCC-CCCCCGATCATC
580 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCG-CCCC--CCCGCCCCCGATCGTC
* * * * *
15495010 GGAACCAT-AATGTCGTCGGTTAGGTTCACCGGCGATGGTGTCCCAACGAAGAAAAATACGGCAC
642 GAAACC-TCAATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
* * * **
15495074 CAGCACATGCCCGAGCCCAACATATGCTGTCGCAACCCTCGGTCCGGTCCAATCTTCA-ACTGGG
706 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT-AGACTGGG
*
15495138 AATGAACTCTATATGCTTAGACTGGGAATGAACTC
770 AATGAACTCTGTATGCTTAGACTGGGAATGAACTC
15495173 CATATGCTTA
Statistics
Matches: 3788, Mismatches: 498, Indels: 136
0.86 0.11 0.03
Matches are distributed among these distances:
871 82 0.02
874 3 0.00
875 4 0.00
877 213 0.06
878 156 0.04
879 1 0.00
880 120 0.03
881 273 0.07
882 153 0.04
883 5 0.00
884 211 0.06
885 4 0.00
886 2 0.00
887 4 0.00
888 459 0.12
889 670 0.18
890 498 0.13
891 10 0.00
892 26 0.01
893 562 0.15
894 328 0.09
895 4 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (889 bp):
GTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGATTCGATCAGATCTTAGACTAGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGG
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCCCCGCCCCCGATCGTCGAAACCTCA
ATGCCGTCGGTCAGGTTCATCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTG
TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGG
Found at i:15495168 original size:26 final size:26
Alignment explanation
Indices: 15495132--15495205 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
15495122 CCAATCTTCA
15495132 ACTGGGAATGAACTCTATATGCTTAG
1 ACTGGGAATGAACTCTATATGCTTAG
*
15495158 ACTGGGAATGAACTCCATATGCTTAG
1 ACTGGGAATGAACTCTATATGCTTAG
* *
15495184 ATTGGGAATGAACTCTGTATGC
1 ACTGGGAATGAACTCTATATGC
15495206 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
ACTGGGAATGAACTCTATATGCTTAG
Found at i:15496833 original size:26 final size:26
Alignment explanation
Indices: 15496797--15496849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15496787 CTGGTCTGAT
15496797 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
15496823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15496849 C
1 C
15496850 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15497560 original size:886 final size:885
Alignment explanation
Indices: 15495274--15499090 Score: 4956
Period size: 886 Copynumber: 4.3 Consensus size: 885
15495264 CAGGCGGTAA
* * *
15495274 GCCGGCTAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15495339 CTTCATATTTCTACCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
15495404 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
131 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
15495469 ACGGTTCGGGATTGTTTAAAATCTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATT
196 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
15495534 CTTGTATTTTT-TTGGCATGCACAAAAAAAAATCAGCTAAAAACTCGTAGTGTACAAGATTTTGT
261 CTTGTATTTTTGTTGGCATGCAC--AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* ** * *
15495598 GACCATTTGAAAAAGGTGTTTCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
15495663 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGAGGCCAACAAAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATAA
*
15495728 GGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTTCCCCGCCACCCCCGATCGC
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--CCCCG-CACCCCCGATCGC
* * **
15495793 CGGAATCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGGGGCAC
516 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAAAAAAATACGGCAC
* * * * *
15495858 CAGCACATGCCCGAGCCCAGCATGTGCTG-CGTCAACCCTCGATCCGATCTAATCTTAGATTGGC
581 CAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* * * * *
15495922 AATGAACTCCGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCTCGGAACCAGC
645 AATGAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
15495987 GTACGGGCGCTCAGTCGACCAGAGGGGCGGGATGTGCAAGCCGAGAATCAGTCGGGTCCCCCTTT
710 GTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCT
* * * *
15496052 GCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAACCTTAGACTGGGAATGAACTCC
775 GCGTGCTACCGATCCTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCC
* *
15496117 GTATGCCTAAGCGAACCGACGAAACGGGTGGGCGGGCAAGCGGGCACTAC
840 GTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGC-A---GGCACTAC
*
15496167 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15496232 CTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15496297 CCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTT
131 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
** *
15496362 ACGGACCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATC
196 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
15496427 CTTTTATTTTTGTTCGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
15496492 ACCATTTG-GAAAAGTGTCCACATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGCAAAAT
325 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
15496556 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGATTTGATGAGGGATAGGGGGCCAATATAAG
390 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATAAG
* * * * *
15496621 GACCAA-TACCAGCACCCATTGCACATCATGTGTGAACA-CCCCCCGGC-CCCCCGATCGCCGGA
455 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCACCCCCGATCGCCGGA
15496683 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCC-A-GCAAAAAAGAATACGGCACCA
520 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACG-AAAAAA-AATACGGCACCA
* * * *
15496746 ACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAAT
583 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* *
15496811 GAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTG
648 GAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
15496876 CGGGCGCTCAGTC-AGCCAGAGGGGCAGCATGCGCAAGCCGAGGATCGGTCGGGCCCCCCTCTAC
713 CGGGCGCTCAGTCGA-CCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCTGC
* ** ** * * * ** *
15496940 GTGTTGTCGATCCTGCTATTGGAACCCTCTGTTC-GGTCTGATCTTAGACTTTGAATGAACTCCA
777 GTGCTACCGATCCTGCTACCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCG
15497004 TATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCAGGCACTAC
841 TATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCAGGCACTAC
* * * * * *
15497049 GTCGACTAGAAAGGCGGGATGCGCAAGCCGTGGAACGATAGGGTTGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** * * *
15497114 CTTTATATTTCTGTCGTGCAAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCATAA-
66 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * **
15497178 CCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTT
131 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * ** * **
15497243 ACGGTTCGAGATTTTTTTAAATTTTTTCAAAAGGTGTTTTCACCCCAAAATTTATAGACGTGATC
196 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
15497308 CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
261 CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15497373 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
15497438 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATAAGG
* * *
15497503 GCCAAGTACCAGCAACCA-CTGCACATCATGTGCGCACACCCCCCCCGGCCACCCCCGATCGTCA
456 GCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCCCCCC-G-CACCCCCGATCGCCG
** * * * * *
15497567 GAACCCCAATATCGTCTGTTAGTTTCTTCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCA
518 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAAAAAAATACGGCACCA
* * *
15497632 GCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAAT
583 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * *
15497697 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCAG-
648 GAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GT
* * * * * * *
15497761 GCGGGCGCTCAATCGGCCAGAGGGG-AGGGATGCGTAGGCTGGGGATCGGTCGGGTCCCCCTCTG
712 GCGGGCGCTCAGTCGACCAGAGGGGCA-GGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCTG
*** * * *
15497825 CGTGCTACCGATCCTGCTGTTGCAACCCT-TAGCCCGGTCCGATCTTAGACTGGGAATGAACT-C
776 CGTGCTACCGATCCTGCTACCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * *
15497888 GTATGCCTAAGCCTACCGATGAAACGGGCGGGTGGGCGGGCGGGAAATAC
840 GTATGCCTAAGCCAACCGACGAAACGGGC----GGGCGGGCAGGCACTAC
*
15497938 GCCGGCCAGAGCGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15498003 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCGTACATTGGTCCCTTAAG
66 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15498068 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
131 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
15498133 ACGGTTCGGGATTTTTTAAAATCTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATC
196 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
15498198 CTTGTATTTTTGTTGGCATGCTA-AAAAAAATCATCTAAAAACTC-ACAGTGTACAAGATTTTGT
261 CTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGT
** * *
15498261 GACCATTTGAAAAAAGTGTTTCCATTTCGGAA-ACTTTAATGGCTACAGGCAGCAAACCTGTAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTC-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
15498325 ATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATG-GGGGTTAGGGGCCAATATA
388 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATA
* * *
15498389 AGGGCCAAGTACCAGCACCCATCACACATCCTGTGCGCACA---------CACCCCCGATCGTCG
453 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCACCCCCGATCGCCG
* * * ** * **
15498445 GAACCCTAATGCCGCCAGTCAGGTTCTCCGGTGATGGTGTCTCGAC-AAAGAAAAATGTGGCACC
518 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAA-AAAAATACGGCACC
* * *
15498509 AGCACATGCTCTAACCCAGCATGTGCTGCCGCAACCCTCGGTCC-G---G-TC-----C------
582 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* *
15498558 -G--------AT-CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGT
647 TGAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * ** *
15498613 GCGTGCGTTCAGCCGTCCAGAGGGGCGGGATGCGCAAGCTGGGGATCAACCAGGTCCCCCTCTGC
712 GCGGGCGCTCAGTCGACCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCTGC
* * * *
15498678 GTGCTGCCAATCCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGAATGGGAATGAACTCCGT
777 GTGCTACCGATCCTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
15498743 ATGCCTAAGCCAATCGATGAAACAAGCGAGCGGGTGGGCGGGCACTAC
842 ATGCCTAAGCCAACCGACGAAAC--G-G-GCGGGCGGGCAGGCACTAC
*
15498791 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** * *
15498856 CTTTATATTTCTATGATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
15498921 CCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTGAAACTTTTT
131 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
15498986 ACGGTTCGAGATTTTTTAAAATTTTTCCAGAAGGATTTTTTGCCCCAAACTTGGTAGACATGATC
196 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
15499051 CTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAA
261 CTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAA
15499091 GGCTACTGGC
Statistics
Matches: 2584, Mismatches: 300, Indels: 119
0.86 0.10 0.04
Matches are distributed among these distances:
851 1 0.00
852 148 0.06
853 309 0.12
854 9 0.00
855 1 0.00
856 1 0.00
857 2 0.00
861 1 0.00
868 1 0.00
873 2 0.00
874 1 0.00
877 3 0.00
878 101 0.04
880 48 0.02
881 248 0.10
882 151 0.06
883 6 0.00
884 2 0.00
885 38 0.01
886 585 0.23
887 13 0.01
888 5 0.00
889 181 0.07
890 273 0.11
891 32 0.01
892 111 0.04
893 302 0.12
894 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (885 bp):
GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCACCCCCGATCGCCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAAAAAAATACGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGTCGACCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCTGCGTGC
TACCGATCCTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGGGCGGGCGGGCAGGCACTAC
Found at i:15497719 original size:26 final size:26
Alignment explanation
Indices: 15497683--15497735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15497673 CCAGTCTGAT
15497683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15497709 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15497735 C
1 C
15497736 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15499389 original size:26 final size:26
Alignment explanation
Indices: 15499360--15499412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15499350 CTGGTCCAGT
* *
15499360 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
*
15499386 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
15499412 C
1 C
15499413 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:15500283 original size:26 final size:26
Alignment explanation
Indices: 15500245--15500297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15500235 CCGGTTCGAT
*
15500245 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15500271 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15500297 C
1 C
15500298 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15500849 original size:893 final size:880
Alignment explanation
Indices: 15499091--15503865 Score: 5799
Period size: 868 Copynumber: 5.4 Consensus size: 880
15499081 TTCAGCTAAA
*
15499091 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTCCTCGAGGTTT
1 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
15499155 GATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA
66 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
15499220 CCCCTCGGCCCCCCACGATCGTCGGAACCCTAATACCGTCGGTCAGGTTCTCCGACGATGGTGTC
131 CCCC-C--CGCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTC
* * * * *
15499285 CC-AGTGAAGAAAAATAGGGCACCAGCACATGCCCGAGCGCAGCATATGCTGGAGCAACCCTCTG
192 CCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC--
* * * *
15499349 TCTGGTCCAGTCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCGTATGCC
254 TCCGGTCGA-TCTTAGACT-GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
** * * * * *
15499414 TAAGTCAACCCACGAAACGAGTTTGCGGGTGCTCAACCAGCCAGAGGAGCGGGATACGCAAGCCA
317 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG-GCGGGATGCGCAAGTCG
* * * * ** * * * *
15499479 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGT-CAATCCTGCTGCAGCAACTCTTGGTTCGGTCCG
381 GGGATCGATCGGGTCCCCCTCTGCGTG-TTTCCGATCCTGCTACCTCAACCCTCGATCCGGTCCG
* *
15499543 ATCTTAGA-TTGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACG-G-G-C-GG-A--CGG
445 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGACGGGCAGGCGG
* * *
15499600 GCACTACGCCGGCCAGAGAGACGGGATGTGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
510 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15499665 GGCACATCTTCATATTTTTTG-TAGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
575 GGCACATCTTCATA-TTTCTGCCA-TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* *
15499729 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCATTTTTTATATTTT-ACT-ATTTT
638 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTAT-TTTTCA-TGATTTT
** * * *
15499792 TGAAACTTTTTAAGGTTCGGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGG
701 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* *
15499857 TAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTAC
766 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
15499922 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAAT
831 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
15499972 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
1 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15500037 GATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
66 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
15500102 CCTCCCCCCCGGCCCCCATGATCGTCGGAACCTCAATACCGTCGGTTAGGTTCTCCGGTGATGGT
131 ----CCCCCC-GCCCCC--GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT
* * * *
15500167 GTCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCATCATGTCCTGCAGCAACCCTC
189 GTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC
*
15500232 AATCCGGTTCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAATTCCGTATG
254 --TCCGG-TCGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
15500297 CCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTCAGTCGGCCAGAAGGGCCGGATAG-GTAAG
315 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAG-AGGGCGGGAT-GCGCAAG
* * *
15500361 TCGGGGATCGATCGGGTCCCCCTCTGGGTGTTTCCGATCCTACTACCTCAACCCTCGATCCTGTC
378 TCGGGGATCGATCGGGTCCCCCTCTGCGTGTTTCCGATCCTGCTACCTCAACCCTCGATCCGGTC
*
15500426 CGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGTACGGGCAGG
443 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG-ACGGGCAGG
* *
15500491 CGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
507 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * **
15500556 TTAGGCACATCTTAATATTTCTACCATGTCAATTACATATTTT-TGGCTTGTAAATTCATACAAT
572 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT-TTTTCTGGCTTGTAAATTCATACAAT
* *
15500620 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTT
636 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
* *
15500685 CAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
701 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
15500750 TAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTAC
766 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
15500815 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
831 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15500865 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTT
1 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15500930 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACA
66 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
15500995 CCCCCCGGCCCCCCGCAATCGTCGGAACCCCAATGCCG-CAGGCCTGGTTCTCAGGCAATGGTGT
131 CCCCCC-G-CCCCCG--ATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGT
* * *
15501059 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCCT-T-
191 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCTC
* * *
15501122 --G--G-TC-----C--G---G---TCTG-AT-TTTAGACTGGAAATGAACTCTGTATGCCTAAG
256 CGGTCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
15501167 TCAACCCACGAAACAAGCGTGCGGGCGCTTAACCGGCCAGAGGGCGGGTATTGCCGCAAGTCGAG
321 TCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGCGGG-A-TG-CGCAAGTCGGG
* * * * * * * *
15501232 GATCGATCGAGTCCCCATCTGCGTGCTGT-CGATCCTACTGCCGCAACCCTCGGTCCGATCCGAT
383 GATCGATCGGGTCCCCCTCTGCGTG-TTTCCGATCCTGCTACCTCAACCCTCGATCCGGTCCGAT
* * * *
15501296 CTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGATGAAACGAGCGAGCGGGTAGGCGGG
447 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGA-CGGGCAGGCGGG
* * *
15501361 CCCACTACGCCGGCCAAAAAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
511 --CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * *
15501426 AGAAACATCTTCATATTTCTGCCATGGCAATGCCATTTTTCTGCCTTGTAAATTCATACAATGGT
574 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
**
15501491 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
639 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAA
* *
15501556 AACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
704 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
15501621 ACGTGATCCTTCTATTTTGGTTGGCATGCACAAAAAAATTCAG-TAAAAAACTCGAAGTGTACAA
769 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAA
*
15501685 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT
833 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
15501733 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
1 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15501798 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACA
66 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
15501863 CCCCCCGACCCCGCCCGATCGTCGTAACCCTAATGCTGCCGGTCAGGTTCTCCGACGATGGTGTC
131 CCCCCCG---CC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTC
* * *
15501928 CCTG-CGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
192 CC-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC--
* * * *
15501992 CCCGGTCTGATCTTAGACTTTGGGATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGC
254 TCCGGTC-GATCTTAGAC--TGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15502057 CTAAGTCAACCCATGAAATGAGCTTGCGGGCGCTCAACCGGCCAGAGGGACGGGATGTGCAAGCC
316 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGG-CGGGATGCGCAAGTC
** * * * ** * * * * *
15502122 GGGGATCGGCCAGGTCCCCCTCTACATACTGCCGATCCTGCT-GCTGGAATCTTCGATCCGGTCC
380 GGGGATCGATCGGGTCCCCCTCTGCGTGTTTCCGATCCTGCTACCT-CAACCCTCGATCCGGTCC
** * * * *
15502186 -CCCTTTGTGTGCTGTCGATCCTACTGCCACAACCCTCTGTCTGGTCTGATCTTAGACTGGTAAT
444 GATC-TT-AG-ACTG-GGA----A-TG----AA--CTC---C--G--T-A---T-G-C--CTAA-
* * * * ** *
15502250 GAACTCTGTATGCCTATGCCAATCGA-CGAAACGACCGGGCGGGCACTACGCCGGCCAGAGAGGC
478 G--C-C--AAT--CGA--CGAAACGAGCG--ACGGGCAGGCGGGCACTACGCCGGCCAGAGAGGC
* * *
15502314 GGGATGCGCAAGCCGTGGATCGATAAGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTTTGTC
532 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
15502378 GTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
597 ATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
*
15502443 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTT
662 TCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTT
* * *
15502508 TTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTGTTTTTTTTG
727 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
15502572 GCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
792 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
15502637 TGTCCCAATTTCAGACACTTTAAT
857 TGTCCCCATTTCAGACACTTTAAT
15502661 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
1 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
15502726 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
66 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * **
15502791 CCCCCCCGCCCCCTATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTTATGGTGTCCCG
131 -CCCCCCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCG
** * * * *
15502856 GTGAAGAAAAATACGACACCAGCACATGCCAGAGCCTAGCGTGTGCTGTCA-CAA-CC-CT-C-G
195 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCCTCTCCGG
*
15502916 --G----T---CT-G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
259 TCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
15502963 ACCCACAAAACAAGCGTGTGGGCACTCAACCAGCCGGAGGGACGAGATGCGCAAGTCGGGGATCG
324 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGG-CGGGATGCGCAAGTCGGGGATCG
* * * * *
15503028 ATCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTATCGT-AACCCTC-ATTTCGATCTGATCTTA
388 ATCGGGTCCCCCTCTGCGTGTTTCCGATCCTGCTA-CCTCAACCCTCGA-TCCGGTCCGATCTTA
* * * *
15503091 GACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAAATGAACGGGCGGGC-GGTTGGGCA
451 GACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGC-GACGGGCAGG-CGGGCA
* * * * * * *
15503154 CTACGTCAGCCAGAAAGGCGGGATGCCCATGCTGCGGATCGATAGGGTGGTAGGTGGGTTTAGGC
513 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
15503219 ACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCT
578 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
* ** *
15503284 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTTTTTTTCATGATTTTTGAAACA
643 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACT
* * * * *
15503349 TTTTATGGTTTGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
708 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15503414 GATCTTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
773 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
15503479 TGTTG-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
838 TG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15503522 GGCTACTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTT
1 GGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** * *
15503587 TGATGAGGGATAGGGGGCCAATATAAGGTTCAAGTACCAGCAACCATCGCACATCATGTACGCAC
65 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
15503652 A------GCCCCCGATAGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGTCTCG
130 ACCCCCCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCG
* *
15503711 ATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGATCTG
195 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC--TCCG
* *
15503776 GTCTGATCTTAGGCTGGGAATGAACT-TCGTAGGCTTAGACTGGGAATGAACTCCGTATGCCTAA
258 GTC-GATCTTAGACT-GGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
15503840 GCCAACCGATGAAACGAGCGGGCGGG
320 GTCAACCCACGAAACGAGCGTGCGGG
15503866 GGGACGGGCA
Statistics
Matches: 3371, Mismatches: 362, Indels: 322
0.83 0.09 0.08
Matches are distributed among these distances:
854 2 0.00
855 97 0.03
856 2 0.00
857 1 0.00
858 2 0.00
859 58 0.02
860 184 0.05
861 118 0.04
862 121 0.04
863 8 0.00
864 65 0.02
865 5 0.00
866 123 0.04
867 8 0.00
868 564 0.17
869 9 0.00
870 4 0.00
871 3 0.00
872 2 0.00
873 2 0.00
874 1 0.00
875 1 0.00
876 2 0.00
877 2 0.00
878 3 0.00
879 3 0.00
880 3 0.00
881 93 0.03
882 83 0.02
883 3 0.00
884 10 0.00
885 254 0.08
886 50 0.01
887 3 0.00
888 2 0.00
889 9 0.00
890 101 0.03
891 3 0.00
892 8 0.00
893 436 0.13
894 86 0.03
895 73 0.02
896 9 0.00
897 2 0.00
898 125 0.04
899 3 0.00
900 5 0.00
901 2 0.00
903 1 0.00
905 2 0.00
906 1 0.00
907 4 0.00
909 1 0.00
910 1 0.00
912 2 0.00
914 1 0.00
915 1 0.00
916 1 0.00
918 1 0.00
919 2 0.00
920 2 0.00
922 2 0.00
923 2 0.00
924 3 0.00
925 89 0.03
926 4 0.00
928 240 0.07
929 190 0.06
930 52 0.02
931 2 0.00
932 13 0.00
933 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (880 bp):
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGA
CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCTCCGGTC
GATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGCGGGATGCGCAAGTCGGGGATCGATC
GGGTCCCCCTCTGCGTGTTTCCGATCCTGCTACCTCAACCCTCGATCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGACGGGCAGGCGGGCACTACGCCG
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
Found at i:15503819 original size:26 final size:26
Alignment explanation
Indices: 15503783--15503832 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15503773 CTGGTCTGAT
* *
15503783 CTTAGGCTGGGAATGAACTTCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
15503809 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15503833 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:15504544 original size:26 final size:26
Alignment explanation
Indices: 15504506--15504558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15504496 CCTGTTCGAT
15504506 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15504532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15504558 C
1 C
15504559 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15506325 original size:26 final size:26
Alignment explanation
Indices: 15506287--15506339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15506277 CTAGTTCGAT
15506287 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15506313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15506339 C
1 C
15506340 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15506760 original size:893 final size:880
Alignment explanation
Indices: 15503809--15507213 Score: 4825
Period size: 888 Copynumber: 3.8 Consensus size: 880
15503799 ACTTCGTAGG
* * * *
15503809 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGG-GGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC-GACGGGCAGG-CGG
* * * * * *
15503873 GCACTACGTCGACTAGAGAGGTGGGATGCGAAAGCCGTGGATCGATAGGGTCGTAGGTGGCTTTA
64 GCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
15503938 GGCACATCTTCATATTTTTGCCGTGCCATTGCCATTTTTCTAGCTTGTAAATTCATACAATGGTC
129 GGCACATCTTCATATTTCTACCATG-CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
*
15504003 CCTTAAGCCTTCCTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
193 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
* *
15504068 ACTTTTTAC-GTT-ATGGGATTTTTTAAACTTTTTTCA-AAGGGAGTTTTGGCCCCAAACTTGGT
258 ACTTTTTACGGTTCA--AGATTTTTTAAAATTTTTTCAGAA-GGAGTTTTGGCCCCAAACTTGGT
* * * *
15504130 AAACGTGATCCTTGTATTTTTGTTGGCCTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15504195 AGATTTTGTGACCATTTTAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15504260 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15504325 CCAATATAAGGGCCAAATACTAGCACCCATCGTACATCATGTGCGCACACGTCCCCCGATCGTCG
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCGATCGTCG
* * * * * *
15504390 GAACCCTAATGTCGCCGATCAGGTTCTCCGACGATGGTGTCTCGACGAAGAAAAATACGGAACCA
580 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCA
* * *
15504455 GCATATGCCCGAGCCCATCATGTCCTGCAGCAACCCTCAATCCTGTTC-GATCTTAGACTAGGAA
645 GCACATGCCCGAGCCCAGCATGTCCTGCAGCAACCCTCAAT-CTGGTCTGATCTTAGACTAGGAA
15504519 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
709 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
15504584 GCAGGCGCTCAGTCGGCCAGAAGGGCCGGATAGGTAAGTCGGGGATCGATCGGGTCCCCCTCTGG
774 GCAGGCGCTCAGTCGGCCAGAAGGGCCGGATAGGTAAGTCGGGGATCGATCGGGTCCCCCTCTGG
* *
15504649 GTGTTGCCGATCCTACTACCACAACCCTCGATCCGGTCTGAT
839 GTGTTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGAT
* * * * *
15504691 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA-CTGAAGAAACGAGCAGGCGGGCGGGTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGC-GACGGGCAGGCGG
* * *
15504755 GCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATTGATAGGGTGGTCGGTGGGTTTA
64 GCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15504820 GGCACATCTTCATATTTCTACCTTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
129 GGCACATCTTCATATTTCTACCATG-CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * * * *
15504885 CTTTAAGCCGTCATGTGAAGTTTCAAGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAA
193 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
* * * **
15504950 ACTTTTTACGGTTCAGGCCTTTTTT-AAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTTTTAG
258 ACTTTTTACGGTTCAAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
15505014 ACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
322 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15505079 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCAACTGGTAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
15505144 TGTAAAATCTCAAATGCTCTTT-AAGGGGCCGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
452 TGTAAAATCTCAAATGCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15505208 CAATATAAGGGCCAAGTACCAACACCCATCACCCATCATGTGCGCACACCACTCAGCCCCCCCGA
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CA--C-G-CCCCCCGA
** * * ** * *
15505273 TCACCGCAACCCCAATGCCG-CTGGTCAGATTCTCCGACGATGGTGTCCCGGTGAAGAAAAGTGC
574 TCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATAC
* * ** * *
15505337 GGCACCAGCACATGCCCGAGCCAAGCATGT--GGCACCGCAACCCTCGGTCCGGTCTGATCTTAT
638 GGCACCAGCACATGCCCGAGCCCAGCATGTCCTGCA--GCAACCCTCAATCTGGTCTGATCTTAG
* * * *
15505400 ACTAAGAATGAAATTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAA
701 ACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
15505465 ACGA--ATGCACGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-GCGTAAGCCGAGGAACGATCGGG
766 ACGAGCGTGCA--GGCGCTCAGTCGGCCAGAAGGGCCGGATAG-GTAAGTCGGGGATCGATCGGG
* ** ** * * *
15505527 -ACCCCTCTACGTCCTACCGAACCTACTGCCGCAACCCTCGGTCCGGTCTGAT
828 TCCCCCTCTGGGTGTTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGAT
* * *
15505579 CTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAATCGACGAAACGACCGAACAGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG-ACGGGCAGGCGGG
* *
15505644 CACTAAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15505709 GCACATCTTCATATTTCTGCCATGGCAATGCCATTTTTCTGGCTTGTAAATTCGTACATTGGTCC
130 GCACATCTTCATATTTCTACCAT-GCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* *
15505774 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
194 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
* * *
15505839 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGCAGGAGTTTTGGCCCCAAACTTGGTAGAC
259 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15505904 GTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGAT
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
15505969 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTTATAGCTACTGGCAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15506034 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
15506099 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCCCCGGCCCCCCTG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---------C-GCCCCCC-G
* * * ** *
15506164 ATCGTCGGAACCTCAATACCGTCGGTTAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATGC
573 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATAC
* *
15506229 GGCACCAGCACATGCCCGAGCCCATCATGTCCTGCAGCAACCCTCAATCTAGT-TCGATCTTAGA
638 GGCACCAGCACATGCCCGAGCCCAGCATGTCCTGCAGCAACCCTCAATCTGGTCT-GATCTTAGA
15506293 CTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
702 CTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
*
15506358 CGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCCAGATAGGTAAGTCGGGGATCGATCGGGTCCC
767 CGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCCGGATAGGTAAGTCGGGGATCGATCGGGTCCC
* * *
15506423 CCTCTGGGTGTTTCCGATCCTACTACCGCAACCCTCGATCCTGTCCGAT
832 CCTCTGGGTGTTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGAT
*
15506472 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGTACGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG-ACGGGCAGGCGGG
* *
15506537 CGCTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
15506602 GCACATCTTAATATTTCTACCATGTCAATTACATATTTT-TGGCTTGTAAATTCATACAATGGTC
130 GCACATCTTCATATTTCTACCATG-CAATGCCAT-TTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
15506666 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGCTTTTCAAA
193 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
* *
15506731 AATTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGA
258 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
15506796 TGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
15506861 TTTTGTTG-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGGCAGCAAAC
388 TTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAAAC
* *
15506925 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGC
451 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * * *
15506990 CAATATAAGGTTCAAGTACCAGCAACCATCGCACATCATGTACGCACA-G-CCCCCGATAGTCAG
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCGATCGTCGG
* *
15507053 AACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGGTGTCCCGATGAAGAAAAATACGGCACCAG
581 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAG
* * * *
15507118 CACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGATCTGGTCTGATCTTAGGCTGGGAATG
646 CACATGCCCGAGCCCAGCATGTCCTGCAGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATG
* *
15507183 AACTTCGTAGGCTTAGACTGGGAATGAACTC
711 AACTCCGTATGCTTAGACTGGGAATGAACTC
15507214 TGTAGGCTTA
Statistics
Matches: 2238, Mismatches: 238, Indels: 95
0.87 0.09 0.04
Matches are distributed among these distances:
881 156 0.07
882 490 0.22
883 15 0.01
884 3 0.00
885 4 0.00
886 2 0.00
887 15 0.01
888 546 0.24
889 216 0.10
891 7 0.00
892 211 0.09
893 442 0.20
894 131 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGACGGGCAGGCGGGC
ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTACCATGCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
TTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCGATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACAT
GCCCGAGCCCAGCATGTCCTGCAGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCG
CTCAGTCGGCCAGAAGGGCCGGATAGGTAAGTCGGGGATCGATCGGGTCCCCCTCTGGGTGTTAC
CGATCCTACTACCGCAACCCTCGATCCGGTCTGAT
Found at i:15507204 original size:26 final size:26
Alignment explanation
Indices: 15507168--15507243 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
15507158 CTGGTCTGAT
*
15507168 CTTAGGCTGGGAATGAACTTCGTAGG
1 CTTAGACTGGGAATGAACTTCGTAGG
15507194 CTTAGACTGGGAATGAAC-TCTGTAGG
1 CTTAGACTGGGAATGAACTTC-GTAGG
* *
15507220 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTTCGTA
15507244 TGCCTAAGCC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 2 0.04
26 42 0.93
27 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTAGG
Found at i:15507947 original size:26 final size:26
Alignment explanation
Indices: 15507917--15507969 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15507907 CTGGTCCGAT
15507917 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
15507943 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
15507969 C
1 C
15507970 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:15509354 original size:887 final size:887
Alignment explanation
Indices: 15507220--15526791 Score: 20926
Period size: 888 Copynumber: 22.1 Consensus size: 887
15507210 ACTCTGTAGG
* *
15507220 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGG-GGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-CGG
* * * *
15507284 GCACTACGCCGACTAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
15507349 GGCACATCTTCATATTTTTGCCGTGCCATTGCCATTTTTCTAGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
15507414 CCTTAAGCCTTCCTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
15507479 ACTTTTTACGTTATGGGATTTTTTAAACTTTTTTCA-AAGGGAGTTTTGGCCCCAAACTTGGTAA
260 ACTTTTTACGGT-TCGGATTTTTTAAAATTTTTTCAGAA-GGAGTTTTGGCCCCAAACTTGGTAG
* *
15507543 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15507608 ATTTTGTGACCATTTTAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15507673 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15507738 AATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA------AGTCCCCCGATC
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* * * * * * * * * *
15507797 GTCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGATGGTGTCTCGACGAAGAAAACTACAGA
583 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGC
* * * * *
15507862 ACCAGCACATGCCAGAGCCCAGCATGTGTTGCCGTAACACTCGGTCTGGTCCGATCTTAGACTGG
648 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* *
15507927 GAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
713 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * *
15507992 CGTGCGGGTGCTTAGCCCGTCAGAGGGGCAGGATACGCAAGCC-AGGGATTGGCCGGGTCCCCCT
778 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCT
** * * ** *
15508056 CTGCGTGCTATCGATCTTGCTGCCGCAACCCTCGATCTAGTCTGAT
842 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* ** **
15508102 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGTAGGG-GGGCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGGCGGGCGG
* * * * *
15508166 GCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCCTTGGATCGGTAGGGTGGTAGGTTGGTTTA
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
15508231 GGCACATCATCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAACGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
** * *
15508296 AATTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
15508361 ACTTTTTACGGTTCGAGATTTTTTCAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTATA
260 ACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15508426 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAATTTGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15508491 TTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATAGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15508556 GTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCTA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
15508621 ATATAAGGGCCAAGTATCAACACCCATCGTACATCATGTTCGCACACCCCCC-GCCCCCCGATCA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * * * * *
15508685 CCGGAACCCCAATACCACCAGTCAGGTTCCCCAGCGACGGTGTCCCGATGAAGAAAAATGTGGCA
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGCA
* * * * *
15508750 -CATGCACATGCTCGAGCCCAGCATGTGCTGTCGCATCCCTCAGTCCGGTCCGATCTTTGACTGG
649 CCA-GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
15508814 GAATGAACTTCGTATGCTTAGACTGGGAGTGAACTCCGCATGCCTAACTCAACCCACGAAATGAA
713 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
15508879 CATGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGTAAGTCGAGGATCGATCGGGTCCCCCTC
778 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTC
* * * * * ** *
15508944 TACGTGCTGCCGATCCTGTTGTCGTAACCTTCAATCCCGTCCGAT
843 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * ** *
15508989 CATAGACTAGGATTGAACTCCGTAAGCCTAAGCCAATTGACGAAATGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15509054 CACTACGCCAGCCTGAGAGGCGGGATGCGCAAGCCGTGGATCGATCGGGTGGCAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
15509119 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTCTTCTAGCTTGTAAATTCATATAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* *
15509184 CTT-AGCCTTCATGTGATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
15509248 CTTTTTACGATTTCGGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGCCCCAAACTTGGTAGAC
261 CTTTTTACG-GTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
15509313 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
325 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15509378 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15509443 GTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * **
15509508 ATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATCTGCG-TTACCCCCCGGCCCCCTCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATC
* * * * * *
15509572 GCCAGAACCCCAATGCCCCCGGTCAGGTTATCCGGCGATGGTG-CACGACGAAGAAAAATACGGC
583 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGC
* * * * * * *
15509636 ACCAGCACATGCCTGAGCCCAGCGTGTGCTGTCGCGACCCTCGGTCCAGTCTGATCTGAGACTGG
648 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * *
15509701 GAATGAACTTCTTATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAA
713 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
15509766 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGTC---GA--GGTCGGGTCCCCCTC
778 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTC
* ** * * *
15509826 TGCGTGCTGTCGATCCTGC-GACCATAACCCTAGGTTCGGTCTGAT
843 TGCGTGCTGCCGATCCTGCTG-CCGCAACCCTCGGTCCGGTCCGAT
* * ** *
15509871 CATAGACTGTGAATGAACTCTATATGCCTAAGCCAACCGACGAAAC-A---AGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
15509932 CACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATCGAGTGGTATGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
15509997 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCT
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
15510062 TTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * ** *
15510127 CTTTTTATGGTTTC-AAATTTTTAAAATTTTTTCGGAAGGCTTTTTGGCCCCAAACCTGGTAGAC
261 CTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
15510191 ATGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15510256 TTTATGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15510321 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15510386 TATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCAGGCCCCCCCGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GG-CCCCCCGA
* * * ** * * *** *
15510451 TCGTCAGAACCCCAATGTCGCCCATCAGGTTCTCCGGTGGTGGTGTCCCGGCAAAGAAAAATGTG
581 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCG
* * * *
15510516 GCACCAGCACATGCCCGAGCCCAACATGTTCTGCTGCAATCCTCGGTCCGGTCCGATCTTAGACT
646 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
15510581 GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
711 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
15510646 AGCGTGCGGGCGCTCAGTCGACCAGAAGGGCGGGATGCGC-A----A-G--C---C--G------
776 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCC
* * **
15510692 ---G-G-GAT--CGATCCTGCTGCCACAACCCTCGGTCCAATCCGAT
841 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * * * *
15510732 CTTAGACTGGGAATGAAGTCCGTGTGCCTAAGCCAATCGACGAAACGAGTGAGCAGGAGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** * * * * * *
15510797 CACTATGTTGGCTAGAGAGGCGGGATGCACAAGTCGTGGATCGATAAGGTAGCAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * **
15510862 GCACATCTTTATATTTTTACCATGAAAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
15510927 TTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
15510992 CTTTTTACGGTTCGAGATTTTATAAAATTTTTT---TAGGAGTTTTGGCCCCAAACTAGGTAAAC
261 CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15511054 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
15511119 TTTGTGACCATTTGAAAAAAGTATCCTCATTTTAGACACTTTAATTGCTACTGGCAGCAAA-CTA
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-
* *
15511183 GTAAAATCTCAGATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** *
15511248 ATATATTGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCGCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATC
* * ** * *
15511313 GCTGGAACCCTAATGCCATCGGTCAGGTTCTCTGGCGATGGTGTCCCGACGAAGAAAAATGCGGC
583 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGC
* * * * *
15511378 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCAGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
648 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * * * *
15511443 GAATGAACTGCATATGCTTTGATTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAG
713 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
15511508 CGTGTGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAGCCCG-GGATCGATCGGGTCCCCCT
778 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGGTCGGGTCCCCCT
* * * * * *
15511571 CTGCGTGCTGTCGATCTTGCTGCCGTAACCCTCGGTTCGGTTCAAT
842 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * *
15511617 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACTAACGGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
15511682 CACTATGTTGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15511747 GCACATCTTCATATTTCGGCCATGCCAACGCCATTTTTCTGGCTTGTAAATTCATAGAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
**
15511812 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTCTTT-TATTTTTCACGATTTTCAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT-TTTCTATTTTTCACGATTTT-TGA
* * *
15511876 AATTTTTTACGGTTCGAGATTTTTAAAAATTTTTTCAGACA-GAGTTCTAGG-CCCAAACTTGGT
259 AACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGA-AGGAGTT-TTGGCCCCAAACTTGGT
* * * *
15511939 AGACGTGATCCATGTATTTTTGTAGGCATCCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** *
15512004 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAAATTAATGGCTACTCGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15512069 CCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGGTGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15512134 CCAGTA-AAGGGCCAAGTACCAGCACCCATAGCACATCATTTGCGCACACCCCCCGGCTCCCCCA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCG
* * * * * ** * * *
15512198 ATCACAGGAACCCCAATGCCGTCGGTTAGATTCTCCAACAATGGTGTCTCGATGAAGAAAAATAC
580 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGC
** * * * * * * *
15512263 GGCAATAGCACATGCCTGAGCCCAGTATGTGCTGTCGTAACCCTTGGTCCCGTACGATCTTAGAC
645 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * * *
15512328 TGGGAATGAACTCCTTATGCTTAGACTGCGAATGAACTCTGTATACCTAAGTCAACCCACGAAAC
710 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
15512393 GAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGCCGGGTCCTC
775 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC
* ** * * * *
15512458 CTCTGTGTGCTATCGATCCTACTGCCGCAACCCTTGGTCCGATCCAAT
840 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
15512506 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
15512571 AACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
15512636 GCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
15512701 CTTAAGCCATT-ATGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCACAATTTTCAAA
196 CTTAAGCC-TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * **
15512765 ACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCAGAAAGAATTTTGGCCCCAAACTTCTTAGA
260 ACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15512830 CGTGAT-CTTGTATTTTTCTAGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15512894 TTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15512959 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGACCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
15513023 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCCCCTCGGCCCCCCCAAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGAT
* * * * * * * *
15513088 CGCCTGAACGCCAATGTCGTCGGTCAGGTTCTCTGGCAATGGTGTCCCGATGAAAAAAAATGTGG
582 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGG
* * * * * *
15513153 CAACTGCACATGCTCGAGACCAGTATGTGCTGTCGCAA----C---CC--T-CGATC-----C--
647 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
15513201 GG--T----TT-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
712 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * **
15513257 GCGTGCAGGCGCTCAGCCGGACAGAGGGGCGGGATGTGCAAGCCTG-GGATCGGCCGAATCCCCC
777 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GAGGATCGGTCGGGTCCCCC
* * * ** *
15513321 TCTGCGTGCTGCCAATCCTGCTGCCACAACCCTTGGTGTGGTTCGAT
841 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * *
15513368 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGTCGAAACGATCGGGCGGGTGGGTC-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-CGG
* * * *
15513432 GCACTACGTCAGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGA
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15513497 GGCACATCTTCATATTTCTGCCATGCGAATGCCATTGTTCTGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
15513562 CCTTAAGCCTTCATTTGAACTTTCATGCCAAGACGACTCGTTTTCTATTTTT-AGCGATTTTTGA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTTGA
* * * *
15513626 AACTTTTTACGGTTCAGGATTTTTTAAAATCTTTTCAGAATGAGTTTTGGCCACAAACCTGGTAG
259 AACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
15513691 ACGTGATCTTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15513756 ATTTTGTAACCATTTGAAAAAAGTGTCCCTATTTCAGGCACTTTAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
15513821 TGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCAT-GAGGTTTGATGAGGGATACGGGGC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGC
* * *
15513885 CAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGTGCACACCCCCCCGACACCCCTC
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCC-C
* ** * * *
15513950 GATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCTGGCGATGGTGTCTCGATGAAGAAAAATG
579 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATG
* * * * * * *
15514015 TGGCACCAGCACATGCTCGAGCCCAGCATATGCTGTCACAACCCTCGGTCCAGTCTGATCTTAGA
644 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * * ** * *** *
15514080 CTGGGAAGGAAATCCGTATGCTTAGACTGGGAATCACCTTTGTATCCCTAAGTCAATAGATGAAA
709 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
15514145 CGAGCGTACGGGCGCTCTGTCGGCCAGAGGGGTGGGATGCGCAAGTCGAGGATCGGTTGGGTCGC
774 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCC
* * * * * *
15514210 CCTCTACGTGCTGCCGATCCTGCTGCCGTAAACATCGATCCGGTTCGAT
839 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
15514259 CTTAAACGGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA------------GCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
15514312 TACTACGCCGGCCAGAGAGGCGGGATGCGTAAACCATGGATCGATACGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15514377 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTTTGGCCTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15514442 CTTAAGCCTTCATGTGAAG-TTCGATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CTTAAGCCTTCATGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
15514506 ACTTTTTACGGGTCAAGATTTTTTAAAATTCTTTCAGAAGGAGTATTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15514571 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15514636 TTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTTGTAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15514701 ATAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * * *
15514766 ATATAAGGGTCAAGTACCTGTA-CCATCCCACATCATATGCGTACACCCCTCCGACCCCCCCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG-GCCCCCCGAT
* * * * * * * *
15514830 TGCCGGAACCCCAATGCTGCAGGTCAGGTTCTCCGACGTTGGTGTCTCGGTGAAGAAAAATGTGG
582 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGG
* * * * *
15514895 CACCAGCACATGCCCGAGCCCAGCACGTGCTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTG
647 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
15514960 GGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
712 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
15515025 GCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCC-AGGGATCGGTCGGGTCCGCC
777 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCC
* * ** * * *
15515089 TCTACGTGCTGCCAAT-CTAGCTATCGCAACCCTCTGTTCGGTCTGAT
841 TCTGCGTGCTGCCGATCCT-GCTGCCGCAACCCTCGGTCCGGTCCGAT
** * * *
15515136 CTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
**
15515201 CACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
15515266 GCACATCTTCATATTTCTGCTATGCCAATGCCAATTTTCTGGCTTGTAAATTCACACAGTTGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15515331 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
15515396 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTT-TTAGAC
261 CTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
15515460 GTGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*** *
15515525 TTTGTGACCATTTGAAAAAAAAATCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15515590 TAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGGTAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15515655 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCTCCCCCGATCA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCG
* * * * * * * * *
15515720 TCGGAACCCCAATGCCACCGATCACGTTCTCCGACGATGGTGTCTCGACGAAGAAAAATGTGACA
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGCA
* * * * * *
15515785 CCAGCACATGCCCCAACCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGGTCTTAGACTAGG
649 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
*
15515850 AATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
714 AATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
15515914 CGTGCGGGTGCTCAACCGGCCATAGGGGCGGGATGCGTAAGCCTGA-GATCGGCCGGGTCCCCCT
778 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GAGGATCGGTCGGGTCCCCCT
** * *
15515978 CTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGAT
842 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
15516024 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15516089 CACTACGTCGGCCAGAGAGACGAGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15516154 GCACATCTTCATATTTCTGCCATGCCCATGCCATTATTT-TGGCTTGTAAATTTATACAATGGTC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATT-TTTCTGGCTTGTAAATTCATACAATGGTC
* * * *
15516218 CTTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTTAAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
15516283 ACTTTTTAAGGTTCAGAATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15516348 CGTGGTCCTTGTATTTTTCTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * * * *
15516413 TTTTGTGACCATTTAAAAAAAGTGTCCCAATTTTAAACACTTTAATGGGTACT-ACAGCAAACCA
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
15516477 GTAAAATCTCAAATGCTCTTTAA-GGCGTGTGAGTTCTTGAGGTTTGAAGAGGGATAAGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15516541 ATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCACGGCCCCCACAAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC-CGAT
* * * * * * *
15516606 CGCCGGAACGCCAATGTCGTCGGTCAGGTTCTCCGGCAATGGTGTCCCGACGAAAAAAAATGCAG
582 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGG
* *
15516671 CACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAGTG
647 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
15516736 GGAATGAACTTCATATGCCTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGA
712 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * **
15516801 GCATACAGGCGCTTAGTCGGCCAGAGGGGCGGGATGCGCAA-CCTGGGGATCGACCGGGTCCCCC
777 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GAGGATCGGTCGGGTCCCCC
* * * * * * * *
15516865 TTTGCGTGCTACCAATCCTGCTACCACAACCCTCGTTCTGGTTCGAT
841 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * * * * * *
15516912 CTTAGACTAGGAATGAACTTCGTATGCATAAACCAATCGACAAAATGAGAGGGCGGGAGGGCCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * **
15516977 CGCTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * * * *
15517042 GTACATCTTCATATTTTTGCCATGCCAGTACCATTTTTTTGGCTTGCAGATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
15517107 CTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
15517172 CTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAGGTGTTTTGGCCCTAAACTTGGTAGAC
261 CTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
15517237 GTGATCCTTGTATTTTTTTTTGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
15517302 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15517367 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
15517432 TATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCTCCCCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCG
* * * * * ** * * *
15517497 TCGGAACCCCAATGCCGTCGATTAGGTTTTTTGACGATGGTGTCCCGGTGAAGAAAAATGTGGCA
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGCA
* * *
15517562 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGCCCGGTCCGATCTTAGGCTGGG
649 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * * *
15517627 AATGAACTTCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAACTCAACCAACGAAACGAGC
714 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * ** **
15517692 GTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCAATCGGGTCCCTTTCT
779 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCT
* * * * * **
15517757 GAGTGCTGCCGATCCTGTTGCCGCAACGCTCGGTCTGATTTGAT
844 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
15517801 CTTAGACTGGGAGTGAACTCCGTATGCCTAA-CCGAACCGATGAAACGAGCGGGCGGGTGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACGAGCGGGCGGGCGGGCGG
* *** * *
15517865 GCACTACGCCGGCCAAAGAGAAAGAATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15517930 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
15517995 CCTTAAGCCTTCATGTGAAGTTTCACGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
15518060 ACTTTTTACGGTTCGATATTTTTTAAAATTCTTTCAGAAGGAGTTTTGG-CCAAATACTTGGTAG
260 ACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA-ACTTGGTAG
* * * *
15518124 ACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15518189 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGTCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
15518254 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15518319 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACACCCCCCGGCACCCCCCGA
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--CCCCCCGA
* * * * * *
15518384 TCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCG
581 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCG
* * * * * * *
15518449 GCACCAGCACATGCACGAGCACAGCATGTGCTACCGCAACCCTTGATCTGGTCTGATCTTAGACT
646 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
15518514 GGGAATGAAATTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACG
711 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * * * ** * *
15518579 AATGTGCGGGTGCTCAGCTGGCCAGAGGGGCCGAATGCGCAAGTTGGGGATTGG-CTGGGTCCCC
776 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCC
** * * * *
15518643 CTCTGCGTGCTGCCGATCCTGCTATCGTAACCCTCAGTTCGGTCTGAT
840 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * *
15518691 CTTAGACTGGGAATGAATTCCGTATGGCTAAGCCAATCGAC-AAA--A-TGAGCGGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15518752 CACTGCGTCGGCCAGAGAGGCGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15518817 GCACATCTTCATATTTCTACCATTCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAAGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* *
15518882 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
15518947 CTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACATGGTAGAC
261 CTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15519012 ATGATCCTTGTATATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
325 GTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15519077 TTTTGTGACGATTCGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
15519142 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15519207 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTCCGCACACCCCCCCGGACCCCTCCGA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCC-CCGA
* * * * * * *
15519272 TCGCTGAAACCCCAATGCCGCCTGTCAAGTTCTCTGGCGATGGTGT-CCGATAAAGAAAAATGTG
581 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCG
* * * * * *
15519336 GCACCAGCACATGCCCGAGCCCAGTATGTGCTACTGCAACCCTCAGTCTGGTCTGATCTTAGACT
646 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * **
15519401 GGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCGAACTTTACCCACGAAAC
711 GGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * ** *
15519465 GAGTGTGCGAGTGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGTAGGGGATCGGTCGGGTCCCC
775 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC
* * * * * * * * * *
15519530 CTCTGCTTGCTACCAATCCTGCTACTGCGACCCTCAGTTCGGTTCAAT
840 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
15519578 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
15519639 CACTACGCTGGCTAGAGTGGCGGGATGGGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15519704 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAGTTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
15519769 TTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
15519834 CTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTCAAAAAGAGTTTTGGCTCCAAACTTGGTAGA
261 CTTTTTACGGTTC-GGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15519899 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15519964 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
15520029 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** *
15520094 ATATAAGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCAT-TGCTTACACCCCCTG
519 ATATAAGGGCC------A-----A-GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* ** * * * *
15520158 GCACCCTCGATCATCGGAACCCTAATGCCGCTGGTCAGGTTCTCCGACGATGGTGTCCCGGTGAA
572 GC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAA
* * * * * *
15520223 GAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGATCCG
636 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* * * * * **
15520288 ATATTAGACTGGGAATGAATTTCGTATGCTTAGATTGGGAATGAAC-CGGT-T--C-AAGGC-TG
701 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * *
15520347 GC-TGGAACGAGTCGTTG-GGTCGGGTTC-G--GGTCA-A--CGCGTGGATCCTTCTTTGGTTAA
766 CCACGAAACGAG-CG-TGCGG--GCGCTCAGCCGGCCAGAGGGGCG-GGA---TGC----G-CAA
** * * * **** *** * ** * * * **
15520404 AACG-GCATCGTTTTGGGT-TTTAT-TG-AAAC-GACG-TCCTTTTG--GCTA---TTGAT--AA
818 GCCGAGGATCG-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
**
15520456 T-TTAT
882 TCCGAT
* * * * *** ** * * *** * * * ** ** *** **
15520461 ATAAAAGTCAAAAAAAATATTTTCGTCATTTTTTTTAATCTTTAA--AAAAAAAATAGCTTTCTC
1 CTTAGACT-GGGAATGA-A-CTCCGT-A---TGCCTAAGC--CAACCGACGAAACGAGCGGGCGG
* *** ** * * * * * * *
15520524 TCTTTTTTTTTTCGTTTC-CTTTTTTTTCTCTCTGGCCAACATAGTTGGTCGGTCGATCCTC-CG
57 GC-------GGGCG-GGCAC------TACGC-C-GG-C--CAGAG-AGG-CGG--GATGCGCAAG
* * * * * *** ** * *
15520587 TCGTTGCTG-TCGCCAGTCGTCGGTCGG-CGGTCGCCGTTGACGG-TGGTC-AGAAAATTCT-CC
99 CCG-TG--GATCG--A-TAG--GGT-GGTAGGT-G-GGTTTA-GGCACATCTTCATATTTCTGCC
** ** ** * ** * * * * * **
15520647 --GAAAACACCAAAATGTTCCCCTCGACCTCCTGAGTCTGGAT-CTGA-GGTCCCTT--TCACAA
152 ATGCCAATGCC---AT-TT-TTCT-G-GCTTGTAAAT-T-CATAC-AATGGTCCCTTAAGC-CTT
* ** ** * * * ** * * ** ****
15520706 AAAATG-ACCTTGATTCGCGTAGATCAAGTTTTGAAGTTTT-TAGTTTTTCTTCCCTTTTTTTTT
206 CATGTGAAGTTTCA-TGGC-AAGA-C--G-ACT--CGTTTTCTA-TTTTTC-ACGATTTTTGAAA
* *** * * * *** * * * ** * *
15520769 TTTTTGGTGAAACTAAC-GCTTTCTT--GGCTTTTGCAGATGGCTCGGTGCTGAGGTTCCTC-AC
261 CTTTT--T-ACGGT-TCGGATTTTTTAAAATTTTTTCAGAAGG---AGT--TTTGG--CCCCAAA
* * ** * ** *********** ** *
15520830 CGTAGGCGAGGACTGTGTATTTTTTTTATTTTTGTTTCTGTTTTAGTTTTTTTTTTGTTTTGGTT
315 C-TTGG-TA-GAC-GTG-A-TCCTTGTATTTTTG--T-TG--GCA-TGCACAAAAAAATTCAG-C
****** * * * * ** * *** *****
15520895 TTTTTTTTTG-CGTCGAAAATAGGGTCTGTCGAGGGTGTTGAAGGGGAAGAA-TGGTTTTTTTTT
367 TAAAAACTCGAAGT-GTACA-AGATTTTGT-GACCAT-TTGAA----AA-AAGT-G-TCCCCATT
* * ** **** * ** * * * * *
15520958 TCGAGA-GC-TCAGATCCCTGGA-TTTTTGAAAATGCCTAG-GGATTTTAAAAGGTTTCTACTT-
421 TC-AGACACTTTA-ATGGCT--ACTGGCAGCAAA--CCT-GTAAAATCTCAAATG-CTCT--TTA
* ** *
15521018 AGGGGGATCTG-GGGCT-GTAGGGTTGTTAGTTG-GTGGTTATAGGGTGGCTGGTCAGGTAGTTG
476 AGGGGG-TGTGAGTTCTCG-A-GG-T-TT-GATGAG-GG--ATAGGG-GGC----CA---A----
* * * ** * **** *** * * ***
15521080 GTAAGGTAATTGGTCGGAGAGTTGCTTGGGTAATTGGTCGGGGAGT--TGGTTGGGTA-ATTGGT
520 -T-A--TAA--GGGC-CA-AG-TAC--CAG-CACCCATCGCACA-TCAT-G-TGCGCACA--CCC
** **** * * * ** * **** *** * *** * * **
15521142 CGGGGCAGTTCGA-CGTCGTACCAACCCTTTGACTTATGTCTTATT-TTC-GTTTTGTTTTTTCG
568 CCCGGCCCCCCGATCGCCGGA--ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCG
* ** ***** ** **** * * *** ** ** * ** ***** *
15521204 TTTGTTGTTTTTTTTTTGTTTG-TTTTGTTAAAT--ATTA--TTATTATTTAAAATAAAATAA-A
631 -ATGAAG----AAAAATG-CGGCACCAG-CACATGCCCGAGCCCAGCATGT--GCTGCCGCAACC
* * * ** * * ** *
15521263 AT-AGT-AGACCCAGA-C-AAAACTGGTGTCT-ACAC--CGTATGCTTAGACAGGGAATGAACTC
687 CTCGGTCCGGTCC-GATCTTAGACTGG-GAATGA-ACTTCGTATGCTTAGACTGGGAATGAACTC
* * * * **
15521321 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCTGGCTAGAGGGGCAAGATGC
749 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * * * * *
15521386 GTAAGCTGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGTCAATCTTACTACCGCAACTCTCGGTC
814 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
**
15521451 CAATCCGAT
879 CGGTCCGAT
** *
15521460 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAAGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
15521525 CACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
15521590 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCGTACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15521655 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
15521720 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGAC
261 CTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
15521785 ATGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
15521850 TTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACAATTTAATGGCTACTCGCAGCAAACCCG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15521915 TAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA---GG----
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
15521973 --T---GACCAAGTACCAGCACCCATCGTACATCATGTGTGCGCA-----C--CCCCCCGATCGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
** * * * *
15522026 CGGAACCAAAATGTCGTCGGTCAGGTTCTCCGACGATTGTGTCCCGATGAAGAAAAATGCGGCAC
585 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGCAC
* * * * * *
15522091 CAGCAAATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGA
650 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
15522156 ATGAAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
715 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
15522221 TACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGCCGGGTACCCCACTA
780 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTG
* * * * *
15522286 CGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTCGATCCGAT
845 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* ** *
15522329 CTTAGACTGAGAATGAACTAAGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGG
* *
15522394 CGGGCGGGTACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGT
62 CGGGC----ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
15522459 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
123 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
** *
15522524 AATGGTCTTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
188 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
15522589 TTTTGAAGCTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGTCCCAAACT
253 TTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * * *
15522654 TGGTAGACGTGATCCTTGTGTTTTTGTAGGCATGCGCAAAAAGATTCAGCTAAAAACTCGGAGTG
317 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
15522719 TACAAGATCTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAG
382 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15522784 CAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAG
447 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15522849 GGGGCCAATATAAGGGCCAAGAACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
512 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
* * *
15522914 CCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGGCGATGGTGTCCCGATGAAGAAAA
576 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAA
* * * * * * *
15522979 ATGCGACACCAGCACATGCCCAAGCCTAGCATGTGCTGCCACAACCCTCGATCCGATCTGATCTT
641 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * * *
15523044 AGACTGGAAATGAAC-TCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACTCAT
706 AGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * ** * *
15523108 GAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATATGCAAGCCGGGGATCGGTTGGG
770 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGG
* ** * * * ** *
15523173 TCCCCCTCTGTGTGCTATCGATCCTGCTACCGTAACCCTTGGTCCAATCCAAT
835 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
15523226 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15523291 CACTATGCCGACC-GAGAGGCGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15523355 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCGGGCTTGTAAATTCATACAACGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * * * * **
15523420 TTTAAGCCTTCATGTGAAGATTCATGGTAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
15523485 CTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACCTGATAGAC
261 CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15523550 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15523615 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTATTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15523680 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT--A-GG----
* * ** *
15523745 TATAAGGGCCAATATAAGGGCCACGTACCAGCACCCATCACACATCAT-TGCTTACACCCCCTGG
513 -----GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* ** * * * ** *
15523809 CACCCTCGATCATCGAAACCCTAATGCCGCTGGTCAGGTTCTCCGATGATGGTGTCCCGGTGAAG
573 C-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAG
** * * * ** * * *
15523874 AAAAATATGACACCAGCACATGCTCGAGTCCAGCATGTGCTGCCATAACCCTCAGTCTGATCCGA
637 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
15523939 TATTAAACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTTTGCCTAAGTCAACC
702 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * ** * * * *
15524004 CACGAAACGAGCGTGTGGGTGCTCAGTGGGCCAGAGGGGTGGAATGCGCAAGCCAAAGATCGGTC
767 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC
* * * * * *
15524069 GGGTCCCCCTCTGCATGCTACCGATCCTGTTGTCGCAACCCTCGGTCTGGTCTGAT
832 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * *
15524125 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAGCGAGCGAGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
15524190 CACTATGCCAGCC----A-----GA-----AA-----GG--C---A----GG-A--------T--
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15524216 GCGCATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTTC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15524281 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
15524346 TTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGA-TTTTGGCCCCAAATTTGGTAGAC
261 CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
15524410 GTGATCCTTGTATTTTTGTTGGGACGCATAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15524475 TCTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15524540 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15524605 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGG--CCCCCCGA
*
15524670 TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCG
581 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCG
* * * * * *
15524735 ACACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGAT-CGAGTCTGATCTTACAT
646 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-GTCCGATCTTAGAC
* * * *
15524799 TGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAAC
710 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
15524864 GAGCGTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCC
775 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC
** * * * *
15524929 CTCTGCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTAT
840 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
*
15524977 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
15525042 CACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * *
15525107 GCACATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTAGCTTGTAAATTCATTCAATGGTC
131 GCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
15525172 CCTTAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAC
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15525237 ACTTTTTACGGTTC-GAGTTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGA
260 ACTTTTTACGGTTCGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
15525301 CGTGATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15525366 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCT-ACTAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACC
* * *
15525430 TGAAAAATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
15525494 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCC
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGG--CCCCCC
*
15525559 GATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATG
579 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATG
* * * * *
15525624 CGACACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGAT-CGAGTCTGATCTTAC
644 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-GTCCGATCTTAG
* * * * *
15525688 ATTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAA
708 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
15525753 ACGAGCGTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCC
773 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCC
** * * * *
15525818 CCCTCTGCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTAT
838 CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
*
15525868 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
15525933 CACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** *
15525998 GCACATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTC
131 GCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * * *
15526063 CCTTAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAC
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* ** *
15526128 ACTTTTTACGGTTC-GAGTTTTTTAAAATTTTTTGAGTTGGAGTTTTGGCCCCAAACATGGTAGA
260 ACTTTTTACGGTTCGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
15526192 CATGATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15526257 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCT-ACTAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACC
* * *
15526321 TGAAAAATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
15526386 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCTGGCCCCCCCG
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC-GG-CCCCCCG
* * * * * * *
15526451 ATCGTCGGAGCCCCAATGTCGCCGGTCAGGTACTCCGTCGATGGTGTCCCGACGAAGAAAAATAC
580 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGC
*
15526516 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G-TC-----C
645 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* *
15526566 T--G--T---C-T-G-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
710 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
15526620 GAGCGTGCGGGCGCTCAGCCGACTAGTGGGGCGAGATGCGCAAGTCGGGGATCGGACGGGTCCCC
775 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC
* * * * * * * *
15526685 CTCTACGTGCTACCAATCTTGCTGCCACAACCCTCAGTCTGGTCTGAT
840 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * **
15526733 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCATGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
15526792 CTCAGTCGGC
Statistics
Matches: 15759, Mismatches: 2385, Indels: 1109
0.82 0.12 0.06
Matches are distributed among these distances:
848 40 0.00
849 6 0.00
850 1 0.00
851 7 0.00
852 331 0.02
853 1 0.00
856 1 0.00
857 2 0.00
858 1 0.00
859 16 0.00
860 387 0.02
861 227 0.01
862 440 0.03
863 390 0.02
864 95 0.01
865 482 0.03
866 38 0.00
867 19 0.00
868 17 0.00
869 183 0.01
870 1 0.00
871 5 0.00
872 6 0.00
873 19 0.00
874 2 0.00
875 8 0.00
876 14 0.00
877 914 0.06
878 239 0.02
879 506 0.03
880 10 0.00
881 56 0.00
882 755 0.05
883 18 0.00
884 6 0.00
885 251 0.02
886 494 0.03
887 1951 0.12
888 2375 0.15
889 1730 0.11
890 432 0.03
891 1211 0.08
892 367 0.02
893 23 0.00
894 5 0.00
895 8 0.00
896 53 0.00
897 421 0.03
898 9 0.00
899 360 0.02
900 41 0.00
901 2 0.00
902 1 0.00
907 3 0.00
908 2 0.00
909 2 0.00
910 1 0.00
912 6 0.00
913 3 0.00
914 8 0.00
915 5 0.00
916 7 0.00
917 10 0.00
918 11 0.00
919 6 0.00
920 15 0.00
921 1 0.00
922 16 0.00
923 21 0.00
924 13 0.00
925 7 0.00
926 6 0.00
927 13 0.00
928 12 0.00
929 9 0.00
930 3 0.00
931 7 0.00
932 7 0.00
933 8 0.00
934 20 0.00
935 8 0.00
936 2 0.00
937 10 0.00
938 2 0.00
939 15 0.00
940 3 0.00
941 7 0.00
942 4 0.00
943 4 0.00
944 9 0.00
945 3 0.00
946 14 0.00
947 1 0.00
948 5 0.00
949 9 0.00
951 20 0.00
952 16 0.00
953 8 0.00
954 7 0.00
955 4 0.00
956 5 0.00
957 3 0.00
958 13 0.00
959 12 0.00
960 9 0.00
961 9 0.00
962 18 0.00
963 19 0.00
964 9 0.00
965 10 0.00
966 12 0.00
967 11 0.00
968 8 0.00
969 4 0.00
970 10 0.00
971 7 0.00
972 3 0.00
973 8 0.00
974 7 0.00
977 2 0.00
978 3 0.00
979 3 0.00
981 2 0.00
982 3 0.00
984 3 0.00
985 30 0.00
986 33 0.00
987 29 0.00
988 25 0.00
989 11 0.00
990 16 0.00
991 15 0.00
992 28 0.00
993 4 0.00
994 2 0.00
995 3 0.00
996 7 0.00
997 1 0.00
998 6 0.00
999 6 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGC
GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:15509742 original size:26 final size:26
Alignment explanation
Indices: 15509694--15509743 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15509684 GTCTGATCTG
* * *
15509694 AGACTGGGAATGAACTTCTTATGCTT
1 AGACTGAGAATGAACTCCATATGCTT
15509720 AGACTGAGAATGAACTCCATATGC
1 AGACTGAGAATGAACTCCATATGC
15509744 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCATATGCTT
Found at i:15510602 original size:26 final size:26
Alignment explanation
Indices: 15510573--15510625 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15510563 CCGGTCCGAT
*
15510573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15510599 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15510625 C
1 C
15510626 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15514987 original size:26 final size:26
Alignment explanation
Indices: 15514951--15515003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514941 CCAGTCCAAT
*
15514951 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15514977 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15515003 C
1 C
15515004 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15515890 original size:26 final size:26
Alignment explanation
Indices: 15515839--15515891 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15515829 CCGATCCGGT
**
15515839 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15515865 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15515891 C
1 C
15515892 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15516765 original size:26 final size:26
Alignment explanation
Indices: 15516729--15516782 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
15516719 GGTCCGATCT
* *
15516729 TAGAGTGGGAATGAACTTCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
15516755 TAGACTGGGAATTAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
15516781 TA
1 TA
15516783 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:15517654 original size:26 final size:26
Alignment explanation
Indices: 15517616--15517668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15517606 CCGGTCCGAT
* *
15517616 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15517642 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15517668 C
1 C
15517669 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15518542 original size:26 final size:26
Alignment explanation
Indices: 15518506--15518558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15518496 CTGGTCTGAT
*
15518506 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
15518532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15518558 C
1 C
15518559 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15519422 original size:26 final size:26
Alignment explanation
Indices: 15519393--15519445 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15519383 CTGGTCTGAT
15519393 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15519419 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15519445 C
1 C
15519446 CGAACTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15520105 original size:12 final size:12
Alignment explanation
Indices: 15520088--15520117 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15520078 GAGGGATAGG
15520088 GGGCCAATATAA
1 GGGCCAATATAA
15520100 GGGCCAATATAA
1 GGGCCAATATAA
15520112 GGGCCA
1 GGGCCA
15520118 CGTACCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:15520895 original size:23 final size:21
Alignment explanation
Indices: 15520849--15520903 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
15520839 GGACTGTGTA
*
15520849 TTTTTTTTATTTTTGTTTCTG
1 TTTTTTTTTTTTTTGTTTCTG
15520870 TTTTAGTTTTTTTTTTGTTT-TG
1 TTTT--TTTTTTTTTTGTTTCTG
*
15520892 GTTTTTTTTTTT
1 TTTTTTTTTTTT
15520904 GCGTCGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 8 0.27
21 4 0.13
22 5 0.17
23 13 0.43
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.84
Consensus pattern (21 bp):
TTTTTTTTTTTTTTGTTTCTG
Found at i:15520897 original size:17 final size:17
Alignment explanation
Indices: 15520849--15520902 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
15520839 GGACTGTGTA
15520849 TTTT-TTTTA-TTTTTGT
1 TTTTGTTTTAGTTTTT-T
*
15520865 TTCTGTTTTAGTTTTTT
1 TTTTGTTTTAGTTTTTT
*
15520882 TTTTGTTTTGGTTTTTT
1 TTTTGTTTTAGTTTTTT
15520899 TTTT
1 TTTT
15520903 TGCGTCGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 3 0.09
17 25 0.76
18 5 0.15
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.83
Consensus pattern (17 bp):
TTTTGTTTTAGTTTTTT
Found at i:15521146 original size:24 final size:24
Alignment explanation
Indices: 15521066--15521151 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
15521056 ATAGGGTGGC
* * **
15521066 TGGTCAGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
* *
15521090 TGGTCGGAGAGTTGCTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
15521114 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
15521138 TGGTCGGGGCAGTT
1 TGGTCGGGG-AGTT
15521152 CGACGTCGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 49 0.92
25 4 0.08
ACGTcount: A:0.16, C:0.07, G:0.44, T:0.33
Consensus pattern (24 bp):
TGGTCGGGGAGTTGGTTGGGTAAT
Found at i:15521213 original size:15 final size:15
Alignment explanation
Indices: 15521185--15521229 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
15521175 TTATGTCTTA
15521185 TTTTCG-TT-TTGTT
1 TTTTCGTTTGTTGTT
15521198 TTTTCGTTTGTTGTT
1 TTTTCGTTTGTTGTT
*
15521213 TTTT-TTTTGTTTGTT
1 TTTTCGTTTG-TTGTT
15521228 TT
1 TT
15521230 GTTAAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 16 0.57
ACGTcount: A:0.00, C:0.04, G:0.16, T:0.80
Consensus pattern (15 bp):
TTTTCGTTTGTTGTT
Found at i:15522174 original size:26 final size:26
Alignment explanation
Indices: 15522137--15522196 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
15522127 CCTCGGTCTG
15522137 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
15522161 ATCCGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
15522187 CTCCGTATGC
1 ATCCGTATGC
15522197 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:15522386 original size:4 final size:4
Alignment explanation
Indices: 15522377--15522401 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15522367 GATGAAACGA
15522377 GCGG GCGG GCGG GCGG GCGG GCGG G
1 GCGG GCGG GCGG GCGG GCGG GCGG G
15522402 TACTACGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.76, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:15523070 original size:26 final size:26
Alignment explanation
Indices: 15523041--15523093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15523031 CCGATCTGAT
*
15523041 CTTAGACT-GGAAATGAACTCTGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
15523067 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15523093 C
1 C
15523094 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15523754 original size:12 final size:12
Alignment explanation
Indices: 15523737--15523767 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15523727 TGAGGGATAG
15523737 AGGGCCAATATA
1 AGGGCCAATATA
15523749 AGGGCCAATATA
1 AGGGCCAATATA
15523761 AGGGCCA
1 AGGGCCA
15523768 CGTACCAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
AGGGCCAATATA
Found at i:15525940 original size:891 final size:892
Alignment explanation
Indices: 15524219--15526600 Score: 4180
Period size: 891 Copynumber: 2.7 Consensus size: 892
15524209 GCAGGATGCG
** * * *
15524219 CATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTTCCT
1 CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTCCCT
* * * * *
15524283 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAATT
66 TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACT
* * **
15524348 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGA-TTTTGGCCCCAAATTTGGTAGACGT
131 TTTTACGGTTCGAG-TTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGACGT
* * * * * * * ** * *
15524412 GATCCTTGTATTTTTGTTGGGACGCATAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTC
195 GATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTT
* * * *
15524477 TGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGC-AGCAAACCTGT
260 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCT-ACTAGCAAACCTGA
* * * *
15524541 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAAT
324 AAAATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
15524606 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGAT
389 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGAT
15524671 CGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGA
454 CGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGA
15524736 CACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTG
519 CACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTG
15524801 GTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGA
584 GTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGA
15524866 GCGTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCT
649 GCGTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCT
15524931 CTGCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACT
714 CTGCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACT
15524996 CCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAG
779 CCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAG
15525061 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
844 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15525110 CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTAGCTTGTAAATTCATTCAATGGTCCCT
1 CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTCCCT
15525175 TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACT
66 TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACT
15525240 TTTTACGGTTCGAGTTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGACGTG
131 TTTTACGGTTCGAGTTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGACGTG
15525305 ATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTTT
196 ATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTTT
15525370 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTACTAGCAAACCTGAAA
261 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTACTAGCAAACCTGAAA
15525435 AATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATAT
326 AATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
15525499 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGATCG
391 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGATCG
15525564 CCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGACA
456 CCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGACA
15525629 CCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTGGT
521 CCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTGGT
15525694 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGC
586 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGC
15525759 GTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCT
651 GTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCT
15525824 GCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCC
716 GCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCC
15525889 GTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGC
781 GTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGC
15525954 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
846 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
15526001 CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTCCCT
1 CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTCCCT
*
15526066 TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGACACT
66 TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACT
* * *
15526131 TTTTACGGTTCGAGTTTTTTAAAATTTTTTGAGTTGGAGTTTTGGCCCCAAACATGGTAGACATG
131 TTTTACGGTTCGAGTTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGACGTG
15526196 ATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTTT
196 ATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTTT
15526261 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTACTAGCAAACCTGAAA
261 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTACTAGCAAACCTGAAA
15526326 AATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
326 AATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
15526391 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCTGGC-CCCCCCGATCG
391 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGATCG
* * * * * * * * *
15526455 TCGGAGCCCCAATGTCGCCGGTCAGGTACTCCGTCGATGGTGTCCCGACGAAGAAAAATACGGCA
456 CCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGACA
* * * ** * * *
15526520 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCTGTCTGATCTTAGACTGGG
521 CCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTGGT
*
15526585 AATGAACTCTGTATGC
586 AATGAACTCCGTATGC
15526601 CTAAGTCAAC
Statistics
Matches: 1427, Mismatches: 60, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
891 1058 0.74
892 369 0.26
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
CATCTTCATATTTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATTCAATGGTCCCT
TAAGCCTTCATGTAAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACT
TTTTACGGTTCGAGTTTTTTAAAATTTTTTCAGTAGGAGTTTTGGCCCCAAACATGGTAGACGTG
ATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGCGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTACTAGCAAACCTGAAA
AATCTCAAACGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGGCACCCCCCGATCG
CCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGACA
CCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTTACATTGGT
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGC
GTGCAGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCT
GCGTGCCACTGATTCTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
Found at i:15526937 original size:159 final size:159
Alignment explanation
Indices: 15526549--15526990 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 159
15526539 AGCATGTGCT
* * *
15526549 GCCACAACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 GCCACAACCCTCAGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
15526613 ATGAAACGAGCGTGCGGGCGCTCAGCCGACTAGTGGGGCGAGATGCGCAAGTCGGGGATCGGACG
65 ATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGACA
* *
15526678 GGTCCCCCTCTACGTGCTACCAATCTTGCT
130 GGTCCCCCTCTACGTGCTACCAATCCTGCG
* *
15526708 GCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCA
1 GCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
15526773 CGAAATGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGGTCAG
66 TGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGACAG
** * ** *
15526838 GTCTTCCTCTGCGTGCTGTCGATCCTGCG
131 GTCCCCCTCTACGTGCTACCAATCCTGCG
* * * * * * * ***
15526867 GTCGCAACCTTTAGT-TCGGTCCGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAGCCAATGG
1 GCCACAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
15526931 ATGAAATGGGCGGGCGGGCACT-ACGTCGGCCAGAGAGGCAGGACGCGCAAGTCGTGGATC
65 ATGAAATGAGCGTGCGGGCGCTCA-GTCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATC
15526991 AATAGGGTGG
Statistics
Matches: 235, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
158 4 0.02
159 231 0.98
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.20
Consensus pattern (159 bp):
GCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
TGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGACAG
GTCCCCCTCTACGTGCTACCAATCCTGCG
Found at i:15527623 original size:26 final size:26
Alignment explanation
Indices: 15527587--15527639 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527577 CCGATCCAAT
15527587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15527613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15527639 C
1 C
15527640 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15528510 original size:26 final size:26
Alignment explanation
Indices: 15528474--15528523 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15528464 GTCCGATCTT
*
15528474 AGACTGGGAATGAACTTCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
15528500 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15528524 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:15529073 original size:886 final size:884
Alignment explanation
Indices: 15526733--15529568 Score: 3905
Period size: 886 Copynumber: 3.2 Consensus size: 884
15526723 CTGGTCTGAT
* * * *
15526733 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * ** *
15526798 CGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGGTCA-GGTCTTCCTCTGCGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
15526862 CTGCGGTCGCAACCTTTAGT-TCGGTCCGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAGCC
131 CTGCTGCCACAACCCTCAGTCT-GGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
** * * * * *
15526926 AATGGATGAAATG---GGCGGGCGGGCACTACGTCGGCCAGAGAGGCAGGACGCGCAAGTCGTGG
195 AACCGACGAAACGAACGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
15526988 ATCAATAGGGTGGTAGG-TGAGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTT
260 ATCGATAGGGTGGTAGGTTG-GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
* * * *
15527052 CTGGCTTCTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTC
324 CTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
** * *
15527117 GTTTTCTATTTTTCATAATTTTTGAAACTTTTAACGGTTCGGGATTTTTTAAAATTTTTTCAGAA
389 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTTAGAA
* *
15527182 GGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
453 GAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
*
15527247 CAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AAC
*
15527311 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
* * *
15527376 CGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATT
* * * * *
15527441 TGCGCACACCCCCTGG-CCCCCCAATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGACGA
712 TACGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* ** * * *
15527505 TGGTGTCCCAG-CGAAGAAAAATACGGCACCACCACATGCCCGAGCCCAGCATGTGCTACCGTAA
777 TGGTGTCCC-GTCGAAGAAAAATACGGCACCAGCACATAACGGAGCCCAGCATGTGCTGCCGCAA
* * *
15527569 CCCTCGAG-CCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
841 CCCTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * *
15527613 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGTGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * ** *
15527677 CTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCTGGGTCCCCCTCTATGTGCTGTCGAT
66 C-GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGAT
** * * * * *
15527741 CCCACTACCATAACCCTCAGTCTAGTCTGATCTTAGACTAGGAATGAAC-CTGTATGCCTAAGCC
130 CCTGCTGCCACAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* *
15527805 AACCGACGAAACGAACGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTG
195 AACCGACGAAACGAAC-GGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* *
15527870 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGCATGCCAATGCCATTTTT
259 GATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
* * * *
15527935 CTAGCTTGTAAATTCACACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGCCAAGATGACTC
324 CTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
** *
15528000 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGAATTTTTAAAATTTTTTTAGAA
389 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG-ATTTTTAAAATTTTTTTAGAA
**
15528065 TTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
453 GAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
* *
15528130 CAGCTAAAAACTGGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
* *
15528195 CTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
* *
15528260 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATTT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTT
**
15528325 ACGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGGCGAT
713 ACGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
*
15528390 GGTGTCCCGTCGAAGAAAAATACGGTACCAGCACATAACGGAGCCCAGCATGTGCTGCCGCAACC
778 GGTGTCCCGTCGAAGAAAAATACGGCACCAGCACATAACGGAGCCCAGCATGTGCTGCCGCAACC
15528455 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
843 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * *
15528497 CTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * *
15528562 CGGCCAAAGGGGTGGGATGCACAAGCCGAGGATCAATC-GGATCCCCCTCTGCGTTCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
15528626 CTGTTGCCACAACCCTCGGTCTGGTTC-GATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 CTGCTGCCACAACCCTCAGTCTGG-TCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
15528690 AACCGACAAAACGAACGGACGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGAGCAAGCCGTG
195 AACCGACGAAACGAACGG-CGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * *
15528755 GATCGATAGGGTGGTAGGTTGGTTTAGGTAGATCTTCATATTTTTGCCATGCCAATGCCCTTTTT
259 GATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG-CCATTTT
* *
15528820 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTGTGAAGTTTCATGGCAAGACGACT
323 TCTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
15528885 TGCTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTTGGG-TTTTTAAAAATTTTTTTAG
388 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTT-AAAATTTTTTTAG
* * * * *
15528949 AAGAAGTTTTGGCCCCAAACTTGGTAGACGCGATCTTTTTATTTTTTTTGGCGTGCACAAAAACA
451 AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
* *
15529014 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
15529079 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
* * *
15529144 TCGAGGTTTGATGACGGATA-GGGCCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
15529208 TTACGCACACCCCCCCGGCCCCCCTGATCGCCGTAACCCTAATGCCACCGGTCAGGTTCTCCAGC
711 TTACGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * ** * *
15529273 GATGGTGTTCCGGT-GAAGCAAAATGTGGCACCAGCACATAACGGAGGCCAGCATGTGCTGTCGC
775 GATGGTG-TCCCGTCGAAGAAAAATACGGCACCAGCACATAACGGAGCCCAGCATGTGCTGCCGC
*
15529337 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATG
839 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATG
* * * * * *
15529383 CTTAGACTGGGAATAAACTCCGTATGCCTACGTCGACCCACGAAACGAACGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * * *
15529448 CGGCCAGAGGGGCGGGATGTGCAAGCGGGGGATCGA-CCGGGTTCGCCTCTGCATGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
15529512 TTGCT-ACAGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAAGTCCGTATGC
131 CTGCTGCCA-CAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCCGTATGC
15529569 TTAGACTGGG
Statistics
Matches: 1729, Mismatches: 200, Indels: 48
0.87 0.10 0.02
Matches are distributed among these distances:
879 25 0.01
880 145 0.08
881 1 0.00
882 2 0.00
883 473 0.27
884 285 0.16
885 188 0.11
886 599 0.35
887 11 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAACGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCT
GGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTTAGAAGAA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTACG
CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
GTCCCGTCGAAGAAAAATACGGCACCAGCACATAACGGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:15529386 original size:26 final size:26
Alignment explanation
Indices: 15529357--15529409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15529347 CTGGTCCGAT
* *
15529357 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15529383 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15529409 C
1 C
15529410 CTACGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15529573 original size:26 final size:26
Alignment explanation
Indices: 15529542--15529594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15529532 CCGGTCAGAT
*
15529542 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15529568 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15529594 C
1 C
15529595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15529666 original size:185 final size:184
Alignment explanation
Indices: 15529335--15529753 Score: 507
Period size: 185 Copynumber: 2.3 Consensus size: 184
15529325 ATGTGCTGTC
* * *
15529335 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAA
1 GCAACCCTC-GTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAA
* * * * * * * **
15529400 CTCCGTATGCCTACGTCGACCCACGAAACGAACGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGA
65 CTCCGTATGCCTAAGTCAACCCAAGAAACGAACGTACGGGCGCTCAACCGGCCAAAAGGGCAAGA
* * * *
15529465 TGTGCAAGCGGGGGATCGACCGGGTTCGCCTCTGCATGCTGCCAATCTTGCTACA
130 TGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCTTGCTACA
* *
15529520 GCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAA
1 GCAACCCTC-GTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAA
* * * * *
15529585 CTCTGTATGCCTAAGTCAACCTAAGAAACGAGCGTGCGGGCGTTCAACCGGCCAAAAGGGCAAGA
65 CTCCGTATGCCTAAGTCAACCCAAGAAACGAACGTACGGGCGCTCAACCGGCCAAAAGGGCAAGA
** * * * *
15529650 TGCT-CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGTTGCCGATCTTGCTACC
130 TG-TGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCTTGCTACA
** *
15529705 GCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GCAACCCTCG-TCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGC
15529754 CTAAGCCAAC
Statistics
Matches: 198, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 1 0.01
185 196 0.99
186 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (184 bp):
GCAACCCTCGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAAC
TCCGTATGCCTAAGTCAACCCAAGAAACGAACGTACGGGCGCTCAACCGGCCAAAAGGGCAAGAT
GTGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCTTGCTACA
Found at i:15531324 original size:26 final size:26
Alignment explanation
Indices: 15531288--15531338 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15531278 AGTCCAATCT
*
15531288 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
15531314 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15531339 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:15532151 original size:898 final size:883
Alignment explanation
Indices: 15529540--15532416 Score: 3666
Period size: 898 Copynumber: 3.3 Consensus size: 883
15529530 GTCCGGTCAG
* *
15529540 ATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGAC-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * *
15529605 CTAAGAAACGAGCGTGCGGGCGTTCAACCGGCCAAAAGGGCAAGATGCTCAAGCCGGGGATCGGT
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGAT
* * * *
15529670 CGGGTCCCCCTCTACGTGTTGCCGATCTTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACT
130 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACT
* ** * *
15529735 GGGAATGAACTCCGTATGCCTAAGCCAACCAATAAAATGAGCGGGCAGGCAGGCAGGCACTAC-T
195 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCAGGCAGGCACTACGT
*
15529799 CCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
257 -CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
15529864 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAAAATGGTCCCTTAAGC
321 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
15529929 CTTCATGTGAAGTTTCGTGGCAAGACGACTCATTTTTTTTTATTTTTCATGATTTTCAAAACTTT
386 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTAT-TTTTTCATGATTTTCAAAACTTT
* *
15529994 TTACGGTTC-GAGCTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
450 TTACGGTTCTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTG
* * * *
15530058 ATCCTTGTATTTTTGTTGGCATGCATAAAAAA-AGTCGGCTAAAAACTTGAAGTGTACAAGATTC
514 ATCCTTGTATTTTTGTTGGCATGCATAAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
15530122 TGTGACCATTTGAAAAAAGTGTCCTCATTTCAGAAACTTTACTGGCTATTGGCAGCAAACCTGTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTA
15530187 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
644 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATA
* * *
15530252 TAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCTCAATCAT
707 T-AGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
* * *
15530317 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCAATGAAGAAAAA-GATGGCA
771 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATG-TGGCA
*
15530381 TCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG---G---
835 CCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCTGTCC
* *
15530424 ---TT---C------G-A-TCC-AAT-CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACC
1 ATCTTAGACGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
15530473 CACGAAACGAGCGTGTGGGCGCTCAGTCAGCCAGAGGGGCGGGTTGCGCAAGTC-AGGATCGACC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATC
* * *
15530537 GGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAACGCTCGATCCGATCTGATCTTAGACTG
131 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTG
* * * *
15530602 GGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACAAGCGAGCAGGCAGACGGGCGGGCACTA
196 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GAG-GC-GG--G-CAGGCAGGCACTA
* * *
15530667 CGTCGACCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATA
254 CGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
15530732 TCTTTATATTTCTGTCGTGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
319 TCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
*
15530797 GCCTTCATGTGAAGTTTCATGGCAAGACGACTAG-TTTTCTA-TTTTTCATGATTTTCAAAACTT
384 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTATTTTTTCATGATTTTCAAAACTT
* * *
15530860 TTTATGGTT-TGGGATTTTTTAAAATTTTTTGAGAAGGAGTTTTCGCCGCAAACTTGGTAGACGT
449 TTTACGGTTCTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC-CAAACTTGGTAGACGT
* *
15530924 GATCCTTGTATTTTTGTTCGCATGCACAAAAAAT-TTCAGCTAAAAACTCGAAGTGTACAAGATT
513 GATCCTTGTATTTTTGTTGGCATGCATAAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
15530988 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAAACTTTAATTGCTACTGGCAGCAAACCTGT
578 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGT
* *
15531053 AAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGG------
643 AAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATA
* *
15531111 T-------AGTACCAGTACCCATCGCACATTATGTGCGCACACCCCTCCGGCCCCCCCGATCGTC
707 TAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
* ** * **
15531169 GGAACCCCAATGTCGCCAATTAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACC
772 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACC
* * *
15531234 AGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTAGTCC
837 AGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG-TCT-GTCC
* *
15531283 AATCTTAGACTGGGAATGAACTTCGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 -ATCTTAGAC-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
15531348 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGAGATGCGCAAGCCGGGGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGA
** * * *
15531413 TCGGGTCCCCCTCTGTGTGCTGCCAATCCTGTTACCACAACCCTC-AGTCTGATCTGATCTTAGA
129 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGATCTGATCTTAGA
*
15531477 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGC-GGTAGGCACTACGGT
193 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCAGGCAGGCACTAC-GT
* * * * *
15531541 CGGCCAGAAAGACGGGATGTGCAAGCCATGGATCGATACGGTGGTAGGTGGGTTTTAGGCACATC
257 CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATC
* * * *
15531606 TTCATATTTTTGCCATACCCATGCCATTTTTCTGGCTT-TAAATTCGTACAAT-GTCCCTTAAGC
321 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
15531669 CTTCATGTAAAGTTTCATGGCCAAGACCGACTCGTTTTTCTATTTTTTCATAATTTGTGTTGAAA
386 CTTCATGTGAAGTTTCATGG-CAAGA-CGACTCGTTTTTCTATTTTTTCATGA-TT-T-TCAAAA
*
15531734 CTTGTTACGGTTCTGGGATTTTTTAAACATTTTTTTCAGAAGGAGTTTTGGCCCAAAAACTTGGT
446 CTTTTTACGGTTCTGGGATTTTTTAAA-A-TTTTTTCAGAAGGAGTTTTGGCCC--AAACTTGGT
*
15531799 AAACCGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAATATTCAGCTAAAAACTCGGAAGTGT
507 AGA-CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATATTCAGCTAAAAACTC-GAAGTGT
* * * *
15531863 ACAAGATTTTGTGACCATTAGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGC
570 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGC
15531928 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
635 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-
* *
15531993 GGCCAATATAGGGGCCAAGTACCAGCACCCATCAG-ACATCATGTGCGCACACCCCCCCGACCCC
699 GGCCAATATA-GGGCCAAGTACCAGCACCCATC-GCACATTATGTGCGCACACCCCCCCGGCCCC
* * *
15532057 CCCGATCGTCAGAACCTCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGTCCCGACGAAGAAAA
762 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAA
15532122 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGTTCC
827 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-GTCTG-TCC
* * * * *
15532181 GATCTTAGACGTGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATACATAAGCCAA
1 -ATCTTAGACG-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
15532246 CCCATGAAACGAGCGTGCGGACGCTCAGTCGACCAGAGGGGC-AGGATGCGTAAGTCGATGATC-
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGAGGATCG
* * ** * *
15532309 AGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCTGTTC-GATCTTA
128 ATC-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGATCC-GATCTGATCTTA
* * *
15532373 GAGTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGA
191 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
15532417 ACGGGCGGGC
Statistics
Matches: 1721, Mismatches: 190, Indels: 150
0.84 0.09 0.07
Matches are distributed among these distances:
851 143 0.08
856 1 0.00
859 1 0.00
863 2 0.00
865 4 0.00
866 102 0.06
867 322 0.19
868 4 0.00
869 9 0.01
870 202 0.12
871 68 0.04
872 49 0.03
873 8 0.00
874 12 0.01
875 6 0.00
876 5 0.00
877 98 0.06
878 116 0.07
879 2 0.00
880 21 0.01
881 29 0.02
882 66 0.04
883 94 0.05
884 2 0.00
890 1 0.00
897 5 0.00
898 344 0.20
899 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
ATCTTAGACGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATC
GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCAGGCAGGCACTACGTCGAC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
TGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTATTTTTTCATGATTTTCAAAACTTTTTACGG
TTCTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCATAAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAGGGCCAA
GTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCTGTCC
Found at i:15536496 original size:26 final size:26
Alignment explanation
Indices: 15536467--15536519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536457 CCGATCTGAT
*
15536467 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15536493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15536519 C
1 C
15536520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15536847 original size:876 final size:873
Alignment explanation
Indices: 15534886--15537423 Score: 3504
Period size: 876 Copynumber: 2.9 Consensus size: 873
15534876 GAACGCGTAG
*
15534886 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-GCGGCGTGGCACTACG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-AACG-GGCG-GGCACTACG
* * * *
15534950 CCGGTCAGAAAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
62 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
15535015 TTCATATTTTTGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTAATACAATGGTCCCTTAAGC
127 TTCATATTTTTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
15535080 CTTCATTTGAAG-TTCATGGCAAGACCACTCGTTTTTCTATTTTTCAAGA-TTTT-AAACTTTTT
192 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTT-TATTTTTCATGATTTTTGAAACTTTTT
* * *
15535142 ACGGTTTGGGA-TTTTTTAAAATTTTTC--AGGAGTTTTGGCCCCAAACTTGGTAGAAATGATCC
256 ACGGTTCGGGATTTTTTTAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCC
* * * *
15535204 TTGTATTTTTTGTTGGCATGCACAAAAAATTCAGCAAAAAACTCAAAATGTTAGAAGATTTTGTG
321 TTGTA-TTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTG-TACAAGATTTTGTG
* * *
15535269 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
384 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
15535334 CTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTTGATGAGGGAT-AGGGGCCAATATA
449 CTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAAGGGGCCAATATA
* * * * * ***
15535398 AGGGCAAATACCAGCACCCATTGCACATCATGTGCGCACTCCCCCCCGGCCCCCTCCGTTCATTG
512 AGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGTCCCC-CC-ATCGCCG
** *
15535463 GAACCCTAATGCCTTCGGTCAGGTTCTCCGACAATGGTGTCCCGACGAAGAAAAATGCCGGTACC
575 GAACCC-AATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATG-CGGTACC
* * * * * * * *
15535528 AGCACATGCCCGCGCCCAGCATGTGCTACCGCAACCATCAATCC-ATTTTGAGCTTAGACTAGGA
638 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGA-TCTGATCTTAGACTGGGA
* * * *
15535592 ATGAACTTCGTATGCTTCA-ACTGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAAC-AAG
702 ATGAACTCCGTATGCTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-
** * * * *
15535655 CGTATGGGCACTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTC
765 CGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTC
** * * * * *
15535720 TATGTGCTGCCATTCTGCTACCGCAACCCTCGGTCCGGTCCGAT
830 TACATGCTGCCATCCTACTACCACAACCCTCGATCCGATCCGAT
* *
15535764 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCAAGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--AA--A--AA-----CGGGCGGG
* * *
15535829 CACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAG
55 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15535894 GCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
120 GCACATCTTCATATTTTTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
15535959 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
185 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
* * *
15536024 CTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAT
250 CTTTTTACGGTTCGGGATTTTTTTAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGAA
* *
15536089 GTGATCCTTGTATTTTTGTGGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGAT
314 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
15536154 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGCAAACCTG
378 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15536219 TAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAA
443 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
* *
15536284 TATAAGAGCTAAGTACCAGCACCCATCGCACATCATGTGCGCA-AACCCCCCGGTCCCCCCATCG
508 TATAAGGGC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGTCCCCCCATCG
* * *
15536348 CCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGACCCGACGAAGAAAAATGTGGTT
572 CCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGTA
** * * *
15536413 TTAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTAGTCCGATCTGATCTTAGATTGGG
636 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGACTGGG
*
15536478 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAAC
701 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAC
* * * * *
15536543 GTGCGGGCGCTCAGCCGGCCAGATGGGCAGGATGCTCAAGCTAGGGATCGGTCGGGTCCCCCTCT
766 GTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCT
*
15536608 ACATGCTGCCGATCCTACTACCACAACCCTCGATCTGATCCGAT
831 ACATGCTGCC-ATCCTACTACCACAACCCTCGATCCGATCCGAT
* *
15536652 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGAC-AAAACGGGCGGGCACTATGCCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAACGGGCGGGCACTACGCCGG
*
15536716 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
66 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
15536781 TATTTTTTCCGTGTCAATGCCATTTGTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
131 TATTTTTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
15536846 ATG-GTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGG
196 ATGTG-AAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * * * *
15536910 TTCGAGATTTTTTAAAATGTTTTCAGAAGGGGTTTTGACCCCATACTTGGTAGACGTGATCCTTG
260 TTCGGGATTTTTTTAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTG
* * *
15536975 TTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCA
324 TATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15537040 TTTGAAAAAAGTGTCCCCATTTCAAACGCTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCA
388 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
15537105 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
453 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG-C
* * *
15537170 AAGTACCACCACCCATCGCACGTCATGTGTGCACACCCCCCCCGGTCCCCCCATCGCCGGAACCA
517 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGTCCCCCCATCGCCGGAACC-
* * * * * *
15537235 CAGTGCTGCCGGTCAGATTCTCCGACGATGGTGTCCCGATGAAG-AAAATACGGCACCAGCACAT
580 CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGTACCAGCACAT
* * * *
15537299 GCCCGAGCCCATCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
645 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTC
*
15537364 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
710 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGC
15537424 TGTCGTGGAT
Statistics
Matches: 1476, Mismatches: 154, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
875 1 0.00
876 458 0.31
877 137 0.09
878 105 0.07
879 2 0.00
881 3 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 150 0.10
887 201 0.14
888 141 0.10
889 31 0.02
890 49 0.03
891 139 0.09
892 56 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (873 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAACGGGCGGGCACTACGCCGG
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTTTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTTAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGTCCCCCCATCGCCGGAACCCAATGC
CGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTACATGCTGCCATCCT
ACTACCACAACCCTCGATCCGATCCGAT
Found at i:15537373 original size:26 final size:26
Alignment explanation
Indices: 15537344--15537396 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15537334 CTGATCCGAT
15537344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15537370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15537396 C
1 C
15537397 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15538798 original size:15 final size:15
Alignment explanation
Indices: 15538766--15538799 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15538756 TTGATGATAA
*
15538766 CATGCTAATGTATAT
1 CATGCTAATGAATAT
*
15538781 CATGCTAATGAATGT
1 CATGCTAATGAATAT
15538796 CATG
1 CATG
15538800 TAAAATGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (15 bp):
CATGCTAATGAATAT
Found at i:15539115 original size:17 final size:16
Alignment explanation
Indices: 15539073--15539135 Score: 74
Period size: 16 Copynumber: 3.9 Consensus size: 16
15539063 GGATTTTTTT
*
15539073 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
15539089 AGGATTTTGGATTTCA
1 AGGATTTTGGATTTCA
* *
15539105 GGGTGTTTTGGATTT-A
1 AGG-ATTTTGGATTTCA
15539121 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
15539136 TTAGGGGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
16 28 0.70
17 12 0.30
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.46
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:15540282 original size:19 final size:19
Alignment explanation
Indices: 15540258--15540312 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
15540248 AAGGACTATG
*
15540258 TATTTTTTTATTTTTTTTC
1 TATTTTGTTATTTTTTTTC
*
15540277 TATTTTGGTT-TTTTTTTTG
1 TATTTT-GTTATTTTTTTTC
*
15540296 T-TTTGGTTATTTTTTTT
1 TATTTTGTTATTTTTTTT
15540313 ACGTCGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 3 0.10
18 11 0.35
19 15 0.48
20 2 0.06
ACGTcount: A:0.07, C:0.02, G:0.09, T:0.82
Consensus pattern (19 bp):
TATTTTGTTATTTTTTTTC
Found at i:15540289 original size:18 final size:17
Alignment explanation
Indices: 15540268--15540313 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
15540258 TATTTTTTTA
*
15540268 TTTTTTTTCTATTTTGG
1 TTTTTTTTTTATTTTGG
*
15540285 TTTTTTTTTTGTTTTGG
1 TTTTTTTTTTATTTTGG
15540302 TTATTTTTTTTA
1 TT-TTTTTTTTA
15540314 CGTCGAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.07, C:0.02, G:0.11, T:0.80
Consensus pattern (17 bp):
TTTTTTTTTTATTTTGG
Found at i:15540493 original size:12 final size:12
Alignment explanation
Indices: 15540478--15540553 Score: 64
Period size: 12 Copynumber: 6.3 Consensus size: 12
15540468 ATAGGGTGGC
*
15540478 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
15540490 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
15540502 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
*
15540514 TGGTTGGGTAAT
1 TGGTCGGGTAAT
* *
15540526 TGGTCGGGGAGT
1 TGGTCGGGTAAT
*
15540538 TGGTTGGGTAAT
1 TGGTCGGGTAAT
15540550 TGGT
1 TGGT
15540554 AGGGGCAGTT
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
11 1 0.02
12 46 0.96
13 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.46, T:0.34
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:15540558 original size:24 final size:24
Alignment explanation
Indices: 15540478--15540563 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
15540468 ATAGGGTGGC
* **
15540478 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
*
15540502 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
15540526 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
*
15540550 TGGTAGGGGCAGTT
1 TGGTCGGGG-AGTT
15540564 CGGCGTCGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
24 51 0.93
25 4 0.07
ACGTcount: A:0.16, C:0.05, G:0.47, T:0.33
Consensus pattern (24 bp):
TGGTCGGGGAGTTGGTTGGGTAAT
Found at i:15540616 original size:8 final size:8
Alignment explanation
Indices: 15540603--15540652 Score: 64
Period size: 8 Copynumber: 5.9 Consensus size: 8
15540593 CTTATTTCTG
15540603 TTTTGTTT
1 TTTTGTTT
15540611 TTTTGTTT
1 TTTTGTTT
*
15540619 GTTGTTTTTT
1 -TT-TTGTTT
15540629 TTTTGTTT
1 TTTTGTTT
15540637 TTTTGTTT
1 TTTTGTTT
15540645 GTTTTGTT
1 -TTTTGTT
15540653 AAATATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
8 21 0.57
9 11 0.30
10 5 0.14
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (8 bp):
TTTTGTTT
Found at i:15540621 original size:12 final size:12
Alignment explanation
Indices: 15540604--15540649 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
15540594 TTATTTCTGT
15540604 TTTGTTTTTTTG
1 TTTGTTTTTTTG
*
15540616 TTTGTTGTTTTTTT
1 TTTG-T-TTTTTTG
15540630 TTTGTTTTTTTG
1 TTTGTTTTTTTG
15540642 TTTGTTTT
1 TTTGTTTT
15540650 GTTAAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 18 0.60
13 2 0.07
14 10 0.33
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTTGTTTTTTTG
Found at i:15540932 original size:48 final size:49
Alignment explanation
Indices: 15540823--15541194 Score: 553
Period size: 48 Copynumber: 7.9 Consensus size: 49
15540813 ACAGAAAAGG
*
15540823 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAA-TCTCA--TTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
15540869 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-TCTCATCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
*
15540917 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
15540965 -CTCCTCTC-A-AGAGGCTCCACAACTTTAAAA-TCTCA--TTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
*
15541008 GCTCCTCTCAACAGAGGCTCCAAAACTTTAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
*
15541056 GCTCCTCTCAACAGAGGCT-CACAACTTTAAAA--ATC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTG-AAAAA
*
15541102 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCTCATC-TGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTCTCATCTTGAAAAA
15541151 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATTCTCATCTT
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTCTCATCTT
15541195 TTTCAAATTT
Statistics
Matches: 300, Mismatches: 9, Indels: 30
0.88 0.03 0.09
Matches are distributed among these distances:
43 8 0.03
44 12 0.04
45 29 0.10
46 80 0.27
47 33 0.11
48 81 0.27
49 50 0.17
50 5 0.02
51 2 0.01
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAA
Found at i:15541089 original size:139 final size:140
Alignment explanation
Indices: 15540823--15541194 Score: 585
Period size: 139 Copynumber: 2.6 Consensus size: 140
15540813 ACAGAAAAGG
*
15540823 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATTGAAAAAGCTCCTCTCAACAGAGGCT
1 GCTCCTCTC-ACAGAGGCTCCACAACTTTAAAATCTCATTGAAAAAGCTCCTCTCAACAGAGGCT
*
15540888 CCACAACTTTAAAA-TCTCATCTTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAATT
65 CCACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA--
15540952 CTCTCTTG-AAAAA
128 -TCTCTTGAAAAAA
15540965 -CTCCTCTCA-AGAGGCTCCACAACTTTAAAATCTCATTGAAAAAGCTCCTCTCAACAGAGGCTC
1 GCTCCTCTCACAGAGGCTCCACAACTTTAAAATCTCATTGAAAAAGCTCCTCTCAACAGAGGCTC
*
15541028 CAAAACTTTAAAATTCTC-TCTTGAAAAAGCTCCTCTCAACAGAGGCT-CACAACTTTAAAAATC
66 CACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATC
15541091 TCTTGAAAAAA
130 TCTTGAAAAAA
15541102 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCTCATCTGAAAAAGCTCCTCTCAACAGAG
1 GCTCCTCTCA-CAGAGGCTCCACAACTTT-AAAA-TCTCAT-TGAAAAAGCTCCTCTCAACAGAG
15541167 GCTCCACAACTTTAAAAATTCTCATCTT
62 GCTCCACAACTTT-AAAATTCTCATCTT
15541195 TTTCAAATTT
Statistics
Matches: 215, Mismatches: 4, Indels: 19
0.90 0.02 0.08
Matches are distributed among these distances:
136 7 0.03
137 5 0.02
138 18 0.08
139 97 0.45
140 22 0.10
141 12 0.06
142 6 0.03
143 35 0.16
144 9 0.04
145 4 0.02
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (140 bp):
GCTCCTCTCACAGAGGCTCCACAACTTTAAAATCTCATTGAAAAAGCTCCTCTCAACAGAGGCTC
CACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATCT
CTTGAAAAAA
Found at i:15553362 original size:33 final size:33
Alignment explanation
Indices: 15553299--15553363 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
15553289 TTTAGGACTT
*
15553299 TGGATTTCAAGGATTTTGGATTTTGGGGGGTTC
1 TGGATTTCAAGGATTTTGGATTTTGAGGGGTTC
*
15553332 TGGATTT-AATGGATTTTGGATTTTTAGGGGTT
1 TGGATTTCAA-GGATTTTGGATTTTGAGGGGTT
15553364 TTAGAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.46
Consensus pattern (33 bp):
TGGATTTCAAGGATTTTGGATTTTGAGGGGTTC
Found at i:15554737 original size:24 final size:23
Alignment explanation
Indices: 15554710--15554787 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
15554700 ATAGGGTGGC
* **
15554710 TGGTCGGGTAGTTAGTAAGGTAAT
1 TGGTCGGG-AGTTGGTTGGGTAAT
15554734 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGG-GAGTTGGTTGGGTAAT
15554758 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTC-GGGAGTTGGTTGGGTAAT
15554782 TGGTCG
1 TGGTCG
15554788 AAGCAGTTCG
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
23 1 0.02
24 45 0.92
25 3 0.06
ACGTcount: A:0.17, C:0.05, G:0.45, T:0.33
Consensus pattern (23 bp):
TGGTCGGGAGTTGGTTGGGTAAT
Found at i:15554874 original size:16 final size:16
Alignment explanation
Indices: 15554834--15554874 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
15554824 TCTTATTTTC
15554834 GTTTTGTTTTTTTGTTT
1 GTTTT-TTTTTTTGTTT
* *
15554851 CTTATTTTTTTTGTTT
1 GTTTTTTTTTTTGTTT
15554867 GTTTTTTT
1 GTTTTTTT
15554875 ATTTATTTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.83
Consensus pattern (16 bp):
GTTTTTTTTTTTGTTT
Found at i:15554883 original size:24 final size:24
Alignment explanation
Indices: 15554824--15554886 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 24
15554814 TTGACTTCTG
15554824 TCTTATTTTCGTTTTGTTTTTTTGTT
1 TCTTATTTT--TTTTGTTTTTTTGTT
*
15554850 TCTTATTTTTTTTG-TTTGTT-TT
1 TCTTATTTTTTTTGTTTTTTTGTT
*
15554872 T-TTATTTATTTTGTT
1 TCTTATTTTTTTTGTT
15554887 AAATATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 11 0.32
22 4 0.12
23 5 0.15
24 5 0.15
26 9 0.26
ACGTcount: A:0.06, C:0.05, G:0.10, T:0.79
Consensus pattern (24 bp):
TCTTATTTTTTTTGTTTTTTTGTT
Found at i:15555854 original size:26 final size:26
Alignment explanation
Indices: 15555825--15555874 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15555815 CCGGTATGAT
15555825 CTTAGACTGGGAATCAACTCCGTACG
1 CTTAGACTGGGAATCAACTCCGTACG
*
15555851 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATCAACTCCGTA
15555875 TGCCTGAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTACG
Found at i:15556682 original size:892 final size:888
Alignment explanation
Indices: 15554960--15557172 Score: 3335
Period size: 892 Copynumber: 2.5 Consensus size: 888
15554950 ACAACGTATA
* * *
15554960 CTTAGACTGGGAATGAACTTCCGTATGCCTAAGTCAACCCACAAAACCAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15555025 CTGGCTAGAGGGGCGGGAAACGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATC
65 CCGGCCAGAGGGGC-GGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * * *
15555090 TTGCTACAGCAACCCTTGGTCTGGTCCGATCTTAGAATGGGAATCAACTCCGTATGCGTAAGCCA
129 CTGCTACA-CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
15555155 ACCGACGAAACGAGTGGACGGACGG-GTGGGCACTATGTCGGCCAGAGAGACGGGATGCACAAGC
193 ACCGATGAAACGAGCGGGCGGGCGGCG-GGGCACTATGTCGGCCAGAGAGGCGGGATGCGCAAGC
*
15555219 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAACGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
15555284 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAGTTTCATGGCAAGACG
322 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15555349 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
387 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * *
15555414 AGAAGGAGTTTTGGCCCCAAGCTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
452 AGAAGGAGTTTTGGCCCCAAACTTAGTAGACCTGATCCTTGTATTTTTGTAGGCATGCACAAAAA
* *
15555479 AATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCA
517 AATTCAGCTAAAAAAGCAAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTTCCCATTTCA
15555544 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGT
*
15555609 TCTCAAGGTTTGATAAGGGATAGGATGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
647 TCTCAAGGTTTGATAAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
* * *
15555674 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
712 ATGTGAGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCG
* *
15555739 ACGATGGTGTCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCA
777 ACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTACCATGTGCTGCCA
* * * *
15555804 CAATCCTCGGTCCGGTATGATCTTAGACTGGGAATCAACTCCGTACG
842 AAACCCTCGGTCCGGTATAATCTTAGACTGGGAATCAACTCCGCACG
* *
15555851 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTAAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
15555916 CGGCCAGAGGGGCGCGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCG-GATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * **
15555981 TGCTGCCACAACCATCGGTCCGGTTCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAA
130 TGCT-ACACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15556046 CCGATGAAACGAGCGGGCGGGCGGACGGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
194 CCGATGAAACGAGCGGGCGGGCGG-CGGGGCACTATGTCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
15556111 GTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
15556176 TTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTGATGTGAAGTTTCATGGCAAGATGA
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
*
15556241 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTGT-
388 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT-TC
* ** * * *
15556305 AGAAGGATTTTTTTTCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTAGGCTTGTACAAAA
452 AGAAGGA-GTTTTGGCCCCAAACTTAGTAGACCTGATCCTTGTATTTTTGTAGGCATGCACAAAA
* * *
15556370 AAATTCAGCTAAAAACGCGAAGTGTACTAGATCTTGTGACCATTTGAAAAAAGTG-TCACCATTT
516 AAATTCAGCTAAAAAAGCAAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTTC-CCATTT
* **
15556434 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGTGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGA
* * *
15556499 GTTCTGAAGGTTTGATGAGGGATTAGG-GGCCAATATAAGGGCCGAGTACCAGCACCCATCGTAC
645 GTTCTCAAGGTTTGATAAGGGA-TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
15556563 ATCATGTGAGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCT
709 ATCATGTGAGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCT
* *
15556628 CTGACGATGGTGTCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTACCATGTGCTG
774 CCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTACCATGTGCTG
* * * *
15556693 CCAAAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGCATG
839 CCAAAACCCTCGGTCCGGTATAATCTTAGACTGGGAATCAACTCCGCACG
15556743 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
15556808 CAGCCAGAGGGGCAGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-TCGATC
66 CGGCCAGAGGGGC-GGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATC
** * * *
15556872 CTGCTATCGTAACCCTCAGTCTGG-TCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
129 CTGCTA-CACAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
15556936 AAACGATGAAACGAGCGGGCGGGCGG-GCGGGCACTATGCCGGCCAGATAGGTGGGATGCGCAAG
192 AACCGATGAAACGAGCGGGCGGGCGGCG-GGGCACTATGTCGGCCAGAGAGGCGGGATGCGCAAG
* *
15557000 CCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCCATGCCAATGCCA
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
15557065 TTTTTCTAGCCTGTAAATTCATATAATGGTCCCTTAAG-CTGTCATGTGAAGTTTCATGGCAAGA
321 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGCAAGA
* *
15557129 CGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
385 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
15557173 GAAGAAAAAT
Statistics
Matches: 1197, Mismatches: 111, Indels: 28
0.90 0.08 0.02
Matches are distributed among these distances:
889 1 0.00
890 171 0.14
891 437 0.37
892 583 0.49
893 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCT
GCTACACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGCGGGCGGGCGGCGGGGCACTATGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTAGTAGACCTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATT
CAGCTAAAAAAGCAAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTC
AAGGTTTGATAAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT
GAGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGA
TGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTACCATGTGCTGCCAAAAC
CCTCGGTCCGGTATAATCTTAGACTGGGAATCAACTCCGCACG
Found at i:15556753 original size:26 final size:26
Alignment explanation
Indices: 15556717--15556769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15556707 CTGGTCTAAT
15556717 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15556743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15556769 C
1 C
15556770 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15557279 original size:26 final size:26
Alignment explanation
Indices: 15557243--15557295 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15557233 CGGGTTGGAT
*
15557243 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15557269 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15557295 C
1 C
15557296 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.