Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 79 of 160
Found at i:15558156 original size:26 final size:26
Alignment explanation
Indices: 15558118--15558170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558108 CCAGTCCGAT
* * *
15558118 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15558144 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15558170 C
1 C
15558171 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15558856 original size:867 final size:873
Alignment explanation
Indices: 15557173--15558859 Score: 2654
Period size: 867 Copynumber: 1.9 Consensus size: 873
15557163 TTTTTACGGT
* * ** **
15557173 GAAGAAAAATACGGCACTAGCACATGCCCGAGCGTAGCATGTGCTGCCGCAACCCTCAGTCGGGT
1 GAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGT
** *
15557238 TGGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* *
15557303 AACCCACAAAACGAGCGCACGGGCGCTCAGCCAACCGGAGGGGCGGGATACGAAAGTCGGGGATC
131 AACCCACAAAACGAGCGCACGGGCGCCCAGCCAACCAGAGGGGCGGGATACGAAAGTCGGGGATC
* * *
15557368 GACTGGGTCCCCCTCTACGTGCTACCAATCCCACTATCGCAACCCTCAGTCCGGTCCGATCTTCA
196 AACCGAGTCCCCCTCTACGTGCTACCAATCCCACTATCGCAACCCTCAGTCCGGTCCGATCTTCA
* *
15557433 ACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGATACGAGCGGGCGAGCGGGCGGGCGGGC
261 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGAGCGGGCGGGC-GGC
* *
15557498 GGCACTACGCCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
324 GGCACTACGCCGGCCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
15557563 AGGCACATCTTCATATTTCTATCGAGCCAATGCCATTTTTCTCGCTTGTAAATTCATACAATGGT
389 AGGCACATCTTCATATTTCTATCGAGCCAATGCCATTTTTCTCGCTTGTAAATTCATACAATGGT
15557628 CCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCAAGATTTTCAA
454 CCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCAAGATTTTCAA
*
15557693 AACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
519 AACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAG
* *
15557758 ACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAATCTCGAAGTGTACAGG
584 ACGAGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAGG
*
15557823 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACC
649 ATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACC
* * **
15557888 TGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTT
714 TGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15557953 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCGCGTCGGAACCCCAATGCCGT
779 AAAATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTCCGCGCGTCGGAACCCCAATGCCGT
15558018 CAGTCAGGTTCTCCGAGATGGTGTCCCGAC
844 CAGTCAGGTTCTCCGAGATGGTGTCCCGAC
*
15558048 GAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGT
1 GAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGT
*
15558113 CCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * *
15558178 AACCCACGAAACGAGTGTATGGGCGCCCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
131 AACCCACAAAACGAGCGCACGGGCGCCCAGCCAACCAGAGGGGCGGGATACGAAAGTCGGGGATC
* * * * * *** * * * *
15558243 AACCGAGTTCCTCTCTGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGGTCTGGTCTGATCTT-A
196 AACCGAGTCCCCCTCTACGTGCTACCAATCCCACTATCGCAACCCTCAGTCCGGTCCGATCTTCA
15558307 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G-G-GCGGGCGGGC-G-G
261 -ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGAGCGGGCGGGCGGCG
* *
15558367 GCACTA-GCCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
325 GCACTACGCCGGCCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
15558431 GGCACATCTTCATATTT-T-TGGCATGGCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
390 GGCACATCTTCATATTTCTATCG-A-GCCAATGCCATTTTTCTCGCTTGTAAATTCATACAATGG
* * * * **
15558494 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
453 TCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCAAGATTTTCA
* *
15558559 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTA
518 AAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTA
* * *
15558624 GACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAATCTTGAAGTGTATAG
583 GACGAGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAG
* *
15558689 GATTTTGTGAGCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
648 GATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAAC
15558754 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
713 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
15558819 CAAAATAAGGGCCAAGTACCAGCACCCATCCCACATCATGT
778 CAAAATAAGGGCCAAGTACCAGCACCCATCCCACATCATGT
15558860 GCGCAAACCC
Statistics
Matches: 741, Mismatches: 68, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
865 2 0.00
866 2 0.00
867 451 0.61
868 7 0.01
869 1 0.00
871 10 0.01
872 1 0.00
873 1 0.00
874 1 0.00
875 265 0.36
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (873 bp):
GAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGT
CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCACAAAACGAGCGCACGGGCGCCCAGCCAACCAGAGGGGCGGGATACGAAAGTCGGGGATC
AACCGAGTCCCCCTCTACGTGCTACCAATCCCACTATCGCAACCCTCAGTCCGGTCCGATCTTCA
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGAGCGGGCGGGCGGCGG
CACTACGCCGGCCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTATCGAGCCAATGCCATTTTTCTCGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTAAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCAAGATTTTCAAAA
CCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGAC
GAGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
AATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTCCGCGCGTCGGAACCCCAATGCCGTCA
GTCAGGTTCTCCGAGATGGTGTCCCGAC
Found at i:15559063 original size:87 final size:87
Alignment explanation
Indices: 15558913--15559079 Score: 235
Period size: 87 Copynumber: 1.9 Consensus size: 87
15558903 CGTCGGTGAG
* ** * * *
15558913 GTTCTCCGATGATGGTGTCCTGGTGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATG
1 GTTCTCCGATGATGGTGTCCCGACGAAGAAAAATATGACACCAACACATGCCCGAGCCCAGCATG
15558978 TACTGCCGTAACCCTTGGTCTA
66 TACTGCCGTAACCCTTGGTCTA
* * *
15559000 GTTCTCCGATGATGGTGTCCCGACGAAGAAAAATGTTACACCAACACATGCCCGAGCCTAGCATG
1 GTTCTCCGATGATGGTGTCCCGACGAAGAAAAATATGACACCAACACATGCCCGAGCCCAGCATG
* *
15559065 TGCTGTCGTAACCCT
66 TACTGCCGTAACCCT
15559080 CAGTCCGTCC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (87 bp):
GTTCTCCGATGATGGTGTCCCGACGAAGAAAAATATGACACCAACACATGCCCGAGCCCAGCATG
TACTGCCGTAACCCTTGGTCTA
Found at i:15560161 original size:26 final size:26
Alignment explanation
Indices: 15560123--15560175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15560113 CTGATCTGAT
* *
15560123 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
*
15560149 CTTAAACTTGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
15560175 C
1 C
15560176 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:15561040 original size:26 final size:26
Alignment explanation
Indices: 15561011--15561063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15561001 CTGATCCGAT
15561011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15561037 CTTAGACTGGGAATGTACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15561063 C
1 C
15561064 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15561441 original size:890 final size:886
Alignment explanation
Indices: 15559325--15561930 Score: 3839
Period size: 890 Copynumber: 2.9 Consensus size: 886
15559315 GGCAATACGC
* * *
15559325 CGGCCAGAGAGGCGGGATGTGCAAGCCGGGGATCGATCGGGTTCCCCTCTGCGTGCTGCTGATCC
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCGATCC
* * *
15559390 TGCTATCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAGCTTCGTATGCCTAAGCCAA
66 TGCTA-CTCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
15559455 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
130 CTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
15559520 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTT
195 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTT
* *
15559585 TTCTGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCCTGTGAAGTTTCATGGCAAGACGAC
260 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * * *
15559650 TCGTTTTCTATTTTTCATGATTTTCAAAACCTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAA
325 TCATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * *
15559715 AAGGAGTTTTGGTCCCATACTTGGTAGATGTGATCCCTATATTTTTGTTGGCATGCACAAAACAA
390 AAGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* **
15559780 TTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
455 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
15559845 CACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTTAAATTCTCTTTAAGGGGGTGTGAGTTC
520 CACTTTAATG-CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
15559910 TCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACTAGCACCGATCACAGATCAT
584 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
** * * * * *
15559975 GCACGA-ACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
649 GTGCGACACCCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGT
* *
15560039 GATGGTGTCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGGTGCCGTA
713 GATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
* * * ** *
15560104 GCCTTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAAACTTGGAATGAACTC
778 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTC
*
15560169 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTTTGT
843 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTTAGT
* * * * *
15560213 CGGCCAGAGCGGTGGGATGCGTAAGTCGGGGATCGGTCGGG-TCCCCATCTGCGTGCTGTCGATC
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCC-TCTGCGTGCTGCCGATC
* ** * * *
15560277 CTGCTAC-CGAACCCTCGGTCTGCTCCAATCTTAGACTAGGAATGAACACTGTATGCCTAAGCCA
65 CTGCTACTC-AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
15560341 ACTGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
129 ACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
15560406 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCT-TGCCAATGCCAT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CTGTGCCAATGCCAT
* *
15560470 TTTTTTGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
258 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
15560535 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGACTTTTTAAAATTTTTTC
323 ACTCATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
15560600 AGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
388 AGAAGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
15560665 AATTCAGCTAAAAACTTGAAGTTTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCA
453 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
15560730 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
518 GACACTTTAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
15560795 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAACTACCAGCTCCCATCACACATC
582 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *
15560860 ATGTGCGCACACCCCCCCCGGCCCCCCGATCATCGAAACTCCAATGCCGTTGGTCAGGTTCTCCG
647 ATGTGCG-ACACCCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTTGGTCAGGTTCTCCG
* * * * *
15560925 GTGATGGTGTCCCGACGGAGAAAAATACGGTAGCAGCACATGCCCGAGCCCAGCATGTGCTGCGG
711 GTGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
15560990 TAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTAC
776 TAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAAC
15561055 T-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-GCGTTCAGT
841 TCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGC-TT-AGT
* * * * * *
15561102 CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTTGGGTTCCCCTCTGTGTGCTGCCGATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCGATCC
* * * * *
15561167 TGCTACTACAACCCTCAGTCTGGTTTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAA
66 TGCTACT-CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
15561232 CTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCG
130 CTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
15561297 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTT
195 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTT
*
15561362 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGAC
260 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
15561427 TCATTTTTTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAG
325 TCATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * * *
15561492 AAGGATTTTTGGTGCCAAAGTTGGAAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
390 AAGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
15561557 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
455 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
15561622 CACTTTAATGGCGACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
520 CACTTTAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * **
15561687 TTGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGACAAGTACCAGCACCCAAT-GTACATCA
584 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCACACATCA
* *
15561751 TGTGCGTACA-CCCCCCCGACCCCCCGATCA-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
648 TGTGCG-ACACCCCCCCCGGCCCCCCGATCATC-GGAACCCCAATGCCGTTGGTCAGGTTCTCCG
* * ** *
15561814 GTGATGGTATCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG-TTAGCATGTGCTACCG
711 GTGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
15561878 CAACCCAT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAA
776 TAACCC-TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAA
15561931 TCAACCCTCA
Statistics
Matches: 1542, Mismatches: 160, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
886 1 0.00
887 535 0.35
888 308 0.20
889 158 0.10
890 537 0.35
891 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (886 bp):
CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCGATCC
TGCTACTCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
TGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTT
TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
AGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
GCGACACCCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGAT
GGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCTGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTTAGT
Found at i:15563845 original size:863 final size:861
Alignment explanation
Indices: 15562004--15565237 Score: 4210
Period size: 862 Copynumber: 3.7 Consensus size: 861
15561994 GATCAGTTTG
* * **
15562004 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCATGCGGGCG
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
* * **
15562069 GGCACTACACCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGAAGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ** *
15562134 AGGCACATCTTTATATTTCTGCCGCACCAATGTCATTTTTCTGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTTCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
* * *
15562199 -CCTTAAGCCTTCTTGTGAAGTTTCAAGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
15562263 AACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAT
261 AACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
15562328 ATGTGATCCTTGTATTTTTTTTTTGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAA
326 ACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
15562393 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15562458 CTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC
* ** *
15562523 CAATATAAGGGCCATGTACTGGCACCCATCGTACATCATGTGCGCACACCCCCCCGACCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCG
* *
15562588 ATCG-CGGAACCTCAATGTCGCT-GGTCAGGTTGTCCAACGATGGTGTCACGACGAAGAAAAATA
584 ATCGTCGGAACC-CAATG-C-CTCGGTCAGGTTCTCCGACGATGGTGTC-CGACGAAGAAAAATA
** * * * * * *
15562651 CGGCACCAGCACATAACCGAGCCCAACGTTTGCTGCCACAACCCTCGGTCTGAT-TCGATCTTAG
645 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAG
* * * * * *
15562715 ACTGGGAATGAACTCTGTATGCCTAAGTTAA-CCAACGAAATGAGCGTGC-AGGCACTCAGCTGG
709 ACTGGGAATGAACTCCGTATGCCGAAGTCAATCCAATGAAATGAACGTGCGAGGCGCTCAGC-GG
** * * * *
15562778 AAAGAGGGGTGGGATG-TGCAAGTCGCGAATCGATCGGGTCACCCTCTGCGTGCTG-TCGATCCT
773 CCAGAGGGGCGGGATGCT-CAAGCCGCGGATCGATCGGGTCACCCTCTGCTTGCTGCT-GATCCT
*
15562841 G-T-TACTGCAACCCT-AGGTCTGGTCTG
836 GCTGT-C-GCAACCCTCA-GTCTGGTCTA
* * * * *
15562867 ATGTTAGACT-GGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
* *
15562931 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** *
15562996 AGGCACATCTTCATATTTGTTTTGTGCCAACGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTTCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
*
15563061 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
15563126 AACTTTTTATGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCCAAACTTGGTAG
261 AACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
15563191 ACCTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15563256 ATATTT-TGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGGTACTGCCAGCAAAC
391 AT-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15563320 CTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAAGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC
*
15563385 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC-CCCCCG
* * *
15563450 ATCGTCGAAACCGCAATGCCATCGGTCAGGTTCTCCGGCGATGGTGTCCTGACGAAGAAAAATGC
584 ATCGTCGGAACC-CAATGCC-TCGGTCAGGTTCTCCGACGATGGTGTCC-GACGAAGAAAAATAC
* * * * *
15563515 AGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCCTTGGTCTGGTCTGATCTGAGAC
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
15563580 TGGGAATGAACTCCGTATGCCGAAGTCAATCC-ATGAAATGAACGTGCGA-GCGCTCAGTCGGCC
711 TGGGAATGAACTCCGTATGCCGAAGTCAATCCAATGAAATGAACGTGCGAGGCGCTCAG-CGGCC
* * * *
15563643 AGAGGGGCGAGATGCTTAAGCCGTGGATCGATCGGGTCCCCCTCTGCTTGCTGCTGATCCTGCTG
775 AGAGGGGCGGGATGCTCAAGCCGCGGATCGATCGGGTCACCCTCTGCTTGCTGCTGATCCTGCTG
*
15563708 TCACAACCCTCAGTCTGGTCTA
840 TCGCAACCCTCAGTCTGGTCTA
* * *
15563730 ATCTTAGACTAGGAATGAACACTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCCGGCG
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
* * *
15563795 GGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATTGAT-GATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15563859 AGGCACATCTTCATATTT-TTGCCCTGCCAATGCCATTTTTTTTGGCTTGTAAATTCATACAATG
131 AGGCACATCTTCATATTTCTT-CCGTGCCAATGCCA-TTTTTCTGGCTTGTAAATTCATACAATG
15563923 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
15563988 TAAACTTTTTACGGTTCAGGATTTTTTAAAAATCTTTCAGAAGG-GTTTTTGGCCCCAAACTTGG
259 GAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAG-TTTTGGCCCCAAACTTGG
* * *
15564052 TAGACATTATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
323 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
15564117 AAGATTTTGTGACCATTTGAAAAAAATGTCACCATTTTAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
15564182 ACCTGTAAAATCTCAAACGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGAT-AGAG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG-G
* * * * *
15564246 GGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAGACCCCTCGATCCTCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCC
* *
15564311 CC-ATCGTTGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAAT
581 CCGATCGTCGGAACCCAATGCC-TCGGTCAGGTTCTCCGACGATGGTGT-CCGACGAAGAAAAAT
** * * * *
15564375 TTGGAACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAG
644 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
* *
15564440 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAA
709 ACTGGGAATGAACTCCGTATGC-----C---GAA-G---T-C-AAT-CC-AA-TGAA---ATG-A
* * * * * * *
15564505 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGTGGCGGGATGCGCAAGCCGGGGAGCGAACGGGTCT
753 ACGTGC--G-AGGCGCTCAG-CGGCCAGAGGGGCGGGATGCTCAAGCCGCGGATCGATCGGGTCA
* * * * *
15564570 CACTCTG-TGTGCTGCTGATCCTGCTGCCGCAACCCTCATTTTGGTCCA
814 CCCTCTGCT-TGCTGCTGATCCTGCTGTCGCAACCCTCAGTCTGGTCTA
* * * ** **
15564618 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGAGGGTAGGAT
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
* *
15564683 AGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15564748 AGACACATCTTCATATTTCTTCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTTCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
* * *
15564813 CCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * *
15564878 AACTTTTTACAG-TTCGAGATTTTTTAAAATGTTTTCAGAAGGATTTTTGGCCCCAAACATGGTA
261 AACTTTTTACGGTTTAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15564942 GACATGATTCGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACA
325 GACATGA-TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
15565007 AGATTTTGTGACC--------AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15565064 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
* * *
15565129 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGTCCCCCT
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GACCCCCC
* * *
15565194 C-ATCGCCAGAACCCCAATGTCGC-CGGTCAGGTTCTTCGACGATG
582 CGATCGTCGGAA-CCCAATG-C-CTCGGTCAGGTTCTCCGACGATG
15565238 AGGGGGACCG
Statistics
Matches: 2086, Mismatches: 223, Indels: 104
0.86 0.09 0.04
Matches are distributed among these distances:
861 10 0.00
862 503 0.24
863 431 0.21
864 471 0.23
865 3 0.00
867 1 0.00
870 3 0.00
871 1 0.00
874 1 0.00
875 1 0.00
876 2 0.00
877 2 0.00
879 1 0.00
880 3 0.00
881 144 0.07
882 19 0.01
883 31 0.01
884 7 0.00
885 1 0.00
886 1 0.00
887 4 0.00
888 328 0.16
889 116 0.06
890 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (861 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTTCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
CGTCGGAACCCAATGCCTCGGTCAGGTTCTCCGACGATGGTGTCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCGAAGTCAATCCAATGAAATGAACGTGCGAGGCGCTCAGCGGCCAGAGGG
GCGGGATGCTCAAGCCGCGGATCGATCGGGTCACCCTCTGCTTGCTGCTGATCCTGCTGTCGCAA
CCCTCAGTCTGGTCTA
Found at i:15564464 original size:26 final size:26
Alignment explanation
Indices: 15564435--15564487 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15564425 CTGGTCCGAT
15564435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15564461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15564487 C
1 C
15564488 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15565448 original size:26 final size:26
Alignment explanation
Indices: 15565419--15565470 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15565409 CCGATCCGAT
* *
15565419 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTACGTATG
15565445 CTTAGACTGAGAATGAACTACGTATG
1 CTTAGACTGAGAATGAACTACGTATG
15565471 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTACGTATG
Found at i:15568954 original size:33 final size:33
Alignment explanation
Indices: 15568912--15568977 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
15568902 AAGACCCATT
*
15568912 GAAGCTTTGGAAGCGCATTCCAAGATACTGTGA
1 GAAGCTTTGGAAGCGCAATCCAAGATACTGTGA
15568945 GAAGCTTTGGAAGCGCAATCCAAGATACTGTGA
1 GAAGCTTTGGAAGCGCAATCCAAGATACTGTGA
15568978 ACTTACTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (33 bp):
GAAGCTTTGGAAGCGCAATCCAAGATACTGTGA
Found at i:15572392 original size:26 final size:26
Alignment explanation
Indices: 15572363--15572415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15572353 CTCGTCTGAT
* *
15572363 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15572389 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15572415 C
1 C
15572416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15575051 original size:26 final size:26
Alignment explanation
Indices: 15575001--15575053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15574991 CCGGTCCAAT
*
15575001 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
15575027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15575053 C
1 C
15575054 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15577687 original size:27 final size:27
Alignment explanation
Indices: 15577649--15577700 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
15577639 CAGTTCGATC
15577649 TTAGACTGGGAATGAACTCCGTATGCT
1 TTAGACTGGGAATGAACTCCGTATGCT
15577676 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15577701 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (27 bp):
TTAGACTGGGAATGAACTCCGTATGCT
Found at i:15578284 original size:888 final size:886
Alignment explanation
Indices: 15572036--15579395 Score: 9073
Period size: 889 Copynumber: 8.3 Consensus size: 886
15572026 AGACTGTAGC
*
15572036 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
15572101 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGTG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
15572166 ATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCG
* * * ** *
15572231 GCCCCCCCGATC-TCTGAAACCCCATTGCCACCGGTCAGGTTCTCCGACGATGGTGTCCC-AGTG
195 G-CCCCCCGATCGTC-GGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGA-CG
* * * * ** *
15572294 AAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATTTGCTGGTGCAACCCTCAGCCTC-GT
257 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G-GTCGGT
* * *
15572358 CTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
320 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * * * * *
15572423 AACCCATTAAATGTGCGTGC-GGGCGCTCAACCGACGAAAGGGGCGGGATGCGCAAGCCGGGAAT
385 AACCCACGAAATGAGCGTGCGGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * ** * * **
15572487 TGG-CTGGGTCCTCCTTTGCATGCTGTCGATCCTACTGTCGTAACCCTT-GGTCTGATCAAATCT
449 CGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAA-CCTTCGGTCTGGTCCGATCT
* * *
15572550 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCGGGCGAGCGGGCGGGCA
512 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCA
* * * * *
15572615 CTA-TGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGATGGTAGGTCGGTTTAGG
577 CTACT-CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
15572679 CACATCTTTATATTTTTGCCATGCCAATGCCA-TTTTCTAGCTTGTAAATTCATACAATGGTCCC
641 CACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * * **
15572743 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGATTTCTGTTTTTCATGATTTTTGAAAC
706 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAAC
*
15572808 TTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGAC
771 TTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
15572872 GTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTAGA
835 GTGATCCTTGTATTTTTGTTGGCATCCA-AAACAAATTCAGCTAAAAACTCGA
* * * *
15572925 AGTGTACAAGATTTTATGATCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15572990 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15573055 ATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGTACA-----C--
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
* * * * * *
15573112 CCCCCCGATTGAC-GAAACCTCAATGCCGTCGGTCAGGTTCTCCGATGATGGTGTCCCGGCAAAG
196 CCCCCCGATCGTCGGAACCCT-AATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAG
* *
15573176 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC-G---G-T
260 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGAT
15573232 C-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
325 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * * * * * *
15573281 ACAAAATGAGCGTGCGGGTG-TTCAGCCGGCCAGAAGGATC-GGATGCACATGCCAGCGATCAGC
390 ACGAAATGAGCGTGCGGG-GCCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGT
* *
15573344 CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTT-GGTTTGGT-CGAATCTTAGA
453 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAA-CCTTCGGTCTGGTCCG-ATCTTAGA
** * * *
15573407 CTGGGAAAAAACTCCGTAAGCCTAAGCCAACAGAGGAAACGAGCGGGCGGGCAGGCGGGCGGGCA
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-A-GCGGGCGGGCA
* * *
15573472 CTACGT-CGGCCAGAAAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
577 CTAC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
***
15573536 CACATCTTCATATTTTTGTGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
641 CACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * **
15573601 TTAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAAC
706 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * * * *
15573666 ATTTTACGGTTCGAGATTTTTTAAAATTTTTTAAAAAGGAGTTTTGGCCCAAAACTTGGTGGACG
771 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
15573731 TTATCCTTGAATTTTTGTTGGCATGCACAAAA-ACATTCAGCTAAAAACTCGA
836 TGATCCTTGTATTTTTGTTGGCAT-C-CAAAACAAATTCAGCTAAAAACTCGA
*
15573783 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
15573848 GCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGTGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
15573913 ATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
* * * * * *
15573978 CCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTCTGACGATGGTGTCCCGACCAAG
196 -CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAG
* * * * * * *
15574043 AAAAATTCCGCACCAGCACGTGCCCGAGCCCAGTATGTGCTGTCGCAACCCTTGGTCTGATCCGA
260 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGA
* * * * *
15574108 TCTTATACTGGGAGTGAACTCCTTATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
15574173 CACGAAATGAGCGTGC-GGGCGTTCAGCTGACCAAAGGGGTGGGATGCGCAAGCCGGGGATCGGT
389 CACGAAATGAGCGTGCGGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * * *
15574237 CGGGTCCCCCTATGTGTGTTGTCGATCCTACTACCGTAACTCTT-GGTCCT-GTCTGATCTTAGA
453 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAAC-CTTCGGT-CTGGTCCGATCTTAGA
* * * *
15574300 CCGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCAGGCGGGCACTAC
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTAC
* **
15574365 ACCGGTTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
581 TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15574430 CTTCATATTTTTGCCCTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
646 CTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15574495 CCTTCATGTGAAGTTTCATGGCAAGATGACA-CGTTTTCTATTTTTCACAATTTTCAAAACTTTT
711 CCTTCATGTGAAGTTTCATGGCAAGACGA-ATCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * * * *
15574559 TAAGGTTTGGGATTTTTTAAAATTCTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACTTGAT
775 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
15574624 CCTTGTATTCTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
840 CCTTGTATTTTTGTTGGCATCCA-AAACAAATTCAGCTAAAAACTCGA
** * *
15574672 AGTGTACAAGATTTTGTGACCATTTGAAGTAAGTGTCCCCATTTCAAACACTTTAATGGCTGCTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
15574737 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCAAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
15574802 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCACCCCC
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-C-CCCCC
* *
15574867 GGCCCCCCCCGATCGTCGGAACCCTAATGTCG-CTGGTCAGGTTCTCCGGCGATGGTGTCCCGAC
194 GG--CCCCCCGATCGTCGGAACCCTAATGCCGTC-GGTCAGGTTCTCCGACGATGGTGTCCCGAC
* * * *
15574931 AAAGAAAAATGCGGCACCAGCACATGCCCGAGCTCAGCATGTGCTACCGCAACCCTTGGTCCGGT
256 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGT
* **
15574996 CCAATCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
320 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
15575061 AACCCACGAAACGAGCGTGCGGGCCCTCAGCCGACCAGAGGGGTGGGATGCGCATGCCGGGGATC
385 AACCCACGAAATGAGCGTGCGGGGCCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * **
15575126 GGCCAGGTCCCCCTCTGCGTGCTACCGATGCTACTATCGCAACCCTCGGTCCAGTCCGATCTTAG
450 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAG
* * * *
15575191 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCTGGC-AGGCGGGCGAGCACT
515 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-GCGGGCGGGCACT
* * * *
15575255 ACGCCGCCCAGAGAGCCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
579 ACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
15575320 ATCTTCTTATTTTTGCCTTGCCAATGCCATTTTTCTAGCTTCTAAATTCATACAATGGTCCCTTA
644 ATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15575385 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
709 AGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAACTTT
** * * * *
15575450 TTACAATTCGAGATTTTTTAAAATTTTTTCATAAGGAGTTTTGGCCCCAAAGTTGGTAGACATGA
774 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
15575515 TCCTTGTATTTTTCTTGGCATGCACAAAAC-AATTCAACTAAAAACTCGA
839 TCCTTGTATTTTTGTTGGCAT-C-CAAAACAAATTCAGCTAAAAACTCGA
* *
15575564 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTAAGACACTTTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15575629 GCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15575694 ATAGGGGACCAATATAAGGGCCAAGTACTAGCACCCATCATACATCAT-TGGCGCACACCCCCTC
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT-GCGCACACCCCC-C
** ** * * * *
15575758 GGCCCCCCGATCACCGGAACCCTAAAACTGTCGATCAAGTTCTCCGACGATGGTGTCCCGGC-AA
194 GGCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
* * * * * *
15575822 TGAAAAATGTGGCACCAACACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTTGGTTTGGTCC
259 -GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCGGTCC
* * * * *
15575887 AATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCTGTAAGCCTAAGTCAA
322 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
15575952 CTCACGAAATGAGTGTACGGGAG-CTCAGCCGGCCAGAGGAGCGAGATGCGTAAGCCAGGGATCG
387 CCCACGAAATGAGCGTGCGGG-GCCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * * * *
15576016 GCCGGGTCCCCCTTTTTGTGATGTCGATCCTGCTGCCGCAACCCTT-GGTCTGGTCTGATCTTGG
451 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAA-CCTTCGGTCTGGTCCGATCTTAG
* * * * *
15576080 ACTGGGAATAAACTCCGTATGCCTAAGTCAA-CGACGAAATGGGCGGTGCGGGCGGGCGGGCACT
515 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGAGCGGGCGGGCACT
* * *
15576144 ACGT-CGGCAAGAGAGGCGGGATGCGTAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCA
579 AC-TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** *
15576208 CATTTTCATATTCCTACCATGCCAATGCCATTTTTC-GAGCTTGTAAATTCATACAATGGTCCCT
643 CATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTG-GCTTGTAAATTCATACAATGGTCCCT
* * * **
15576272 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAACT
707 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAACT
* * *
15576337 TTTTACGATTTGGGATTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
772 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
15576402 GATCCTTATATTTTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACCCGA
837 GATCCTTGTATTTTTGTTGGCAT-C-CAAAACAAATTCAGCTAAAAACTCGA
* * * *
15576453 AGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCTCATTTCGGACACCTTAACT-GCTACT
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACT
* * *
15576517 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAAG
65 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
15576582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCG
130 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG
*** * **
15576646 GCCCCCACGATCGTCGGAACCCTAATAATGTCGGTCAGGTTCTCCGACGATGATGTCCCGATTAA
195 GCCCCC-CGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
* * *
15576711 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA--------C---CC--
259 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGA
* * *
15576763 TC--AG--T----CTG-A-TCCG-AT-CTTAGACTGGAAATGAACTCCGTACGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
15576816 CATGAAATGAGCATGC-GGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGT
389 CACGAAATGAGCGTGCGGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * * **
15576880 CGGGTCCCCCTCTACGTGCTGCTGATCCTGTTGCCCCAACCCTCGGTCCAGTCCGATCTTAGACT
453 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACT
* * * * * * * *
15576945 GGGAATTAACTTCATATGCCTAAGCCAACAGATGAAACGGGCGGACGGGCGGGTGGGCGGGTGGG
518 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA----C-GA---GCGGGCGAGCGGGCGGG
* * *
15577010 CACTACACCGACCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAG
575 CACTACTCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** ** *
15577075 GCACATCTTCATATTTTTGCTGTGCCAATGTGATTGTTCTGGCTTGTAAATTCATACAATGGTCC
640 GCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15577140 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-AACTCGTTTTCTATTTTTCATGATTTTCAAA
705 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAA-TCGTTTTCTATTTTTCACGATTTTCAAA
* * *
15577204 ACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCATAAGGAGTTTGGGCCCCAAACTTGGTAGA
769 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15577269 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC-AATTCAGCTAGAAACTCGA
834 CGTGATCCTTGTATTTTTGTTGGCAT-C-CAAAACAAATTCAGCTAAAAACTCGA
* *
15577323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTACAGACACTTAAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
15577388 GCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTAAGTTTTCAAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
15577453 ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-AGCACATCAT-TGGCGTACACCCCCC
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACATCATGT-GCGCACACCCCCC
* * * ** *
15577516 GGCCCCCCGATC-ACCGAAACCTCAATGCCGTCGGTCAGGTTCTTTGGCGATGGTGTCCCGACGA
194 GGCCCCCCGATCGTCGGAACCCT-AATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * * * * * * *
15577580 AGAAAAATGTGACACGAGAACATGCCCGAGCCCAGCATGTGTTGCAGCAACCCTCGGTCCAGTTC
258 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCC
*
15577645 GATCTTAGACTGGGAATGAACTCCGTATGCTTTAGACTGGGAATGAACTCCGTATGGCTAAGTCA
322 GATCTTAGACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
15577710 ACCCACGAAATGAGCGTGCGGGGCCTTAGCCGGCCAGAGGGGCAGGACGCGCAAGCCGGGGATTG
386 ACCCACGAAATGAGCGTGCGGGGCCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * *** * *
15577775 GTCAGGTCCTCCTCTAAGTGCTACCGATCCTGTTTTTGTAACCTTCAGTCTGGTCCGATCTTAGA
451 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGA
* *
15577840 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGAGCGGGCGGGCACTAT
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTAC
* * * *
15577905 TCTGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCATAT
581 TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
15577970 CTTCATATATCTACCATGCTAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCGCTTAAG
646 CTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
15578035 TCTTCATGTGAAGTTTCATGGCCAGACGAATCATTTT-TTTTTTTCACGATTATCAAAACTTTTT
711 CCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* * * **
15578099 ACTGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAGGCTTGGTAGACGTGATC
776 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
15578164 CTTGTATTTTTGTTGGCATCCATAAACAAATTCAGCTAAAAACTCGA
841 CTTGTATTTTTGTTGGCATCCA-AAACAAATTCAGCTAAAAACTCGA
*
15578211 AGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15578276 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
** * *
15578341 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACGCCGCCCTG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCCCG
** * **
15578406 GCCCCCCCGATCGTCGGAACACC-AATGCCGTCGGTCCTGTTCTCCGGCGATGGTGTCCCGGTGA
195 G-CCCCCCGATCGTCGGAAC-CCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * * * *
15578470 AGAAAAATGCGGCACCAGCACATACCCTAGCCTAGCATGTGCTACCGCAACCCTCAGTTCGGTCC
258 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCGGTCC
* *
15578535 GATCTTTGACTGGAAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA
322 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
15578599 CCCATGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCG
387 CCCACGAAATGAGCGTGCGGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** **
15578663 GTCGGGTCCCCCTCTGCATGCTGCCGATCTTGCTGTCGCAACCTTCGGTCTGGTTTGATCTTAGA
451 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGA
*
15578728 TTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTAC
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTAC
* * *
15578793 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCATAT
581 TCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
15578858 CTTCATATATCTACCATGCTAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCGCTTAAG
646 CTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
15578923 TCTTCATGTGAAGTTTCATGGCCAGACGAATCATTTT-T-TTTTTCACGATTATCAAAACTTTTT
711 CCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* *
15578986 ACTGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATC
776 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
15579051 CTTGTATTTGTGTTGGCATGCACAAAAC-TATTCAGCTAAAAACTCGA
841 CTTGTATTTTTGTTGGCAT-C-CAAAACAAATTCAGCTAAAAACTCGA
*
15579098 AGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCA-AGCACTTTAATGGCTACT
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACT
*
15579162 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
65 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
15579227 GATAGGGGGCCAAAATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACAGCCCCCC
130 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCC
* * * * * ** ** **
15579292 CGACCCCCTGATCGCCGAAACCCTAATGCCGTCAGTCAGGTTCTCCGGTGATGGCATCCCGGTGA
193 CGGCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * *
15579357 AGAAAAA-GACGACACCAGCACATGGCCGAGCCCCGCATG
258 AGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATG
15579396 AACTCCATAT
Statistics
Matches: 5616, Mismatches: 696, Indels: 320
0.85 0.10 0.05
Matches are distributed among these distances:
853 162 0.03
854 9 0.00
855 5 0.00
856 1 0.00
857 93 0.02
858 310 0.06
859 54 0.01
860 3 0.00
861 6 0.00
862 157 0.03
863 8 0.00
864 4 0.00
865 1 0.00
866 2 0.00
867 89 0.02
868 8 0.00
869 12 0.00
870 532 0.09
871 19 0.00
872 2 0.00
873 3 0.00
874 2 0.00
876 3 0.00
877 3 0.00
878 6 0.00
879 87 0.02
880 1 0.00
882 3 0.00
884 2 0.00
885 1 0.00
886 8 0.00
887 396 0.07
888 815 0.15
889 1507 0.27
890 136 0.02
891 27 0.00
892 779 0.14
893 176 0.03
894 8 0.00
895 2 0.00
896 1 0.00
897 169 0.03
898 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAATGAGCGTGCGGGGCCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACTCCGG
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATCCAAAACAAATTCAGCTAAAAACTCGA
Found at i:15581150 original size:26 final size:26
Alignment explanation
Indices: 15581099--15581151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15581089 CCGATCTGAT
* *
15581099 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15581125 CTTAGA-TAGGGAATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
15581151 C
1 C
15581152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15582016 original size:26 final size:26
Alignment explanation
Indices: 15581987--15582037 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15581977 TCGGTCCAAT
* *
15581987 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15582013 CTTAGACTGGGAATGAACTACGTAT
1 CTTAGACTGGGAATGAACTACGTAT
15582038 TCCTAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15582452 original size:890 final size:885
Alignment explanation
Indices: 15579393--15584857 Score: 7071
Period size: 889 Copynumber: 6.2 Consensus size: 885
15579383 CGAGCCCCGC
* * * * * *
15579393 ATGAACTCCATATACATAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAG-TCGGCCAGAGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGG
** * * * *
15579457 GCGAGATGCATAAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTACCGATCCTACTATCGCAA
65 GCG-GATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAA
* * * *
15579522 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAACCAACTGACGAAACG
129 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
15579587 AGTGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTAGATCGATAG
194 AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* * * *
15579652 GGCGGTAGGTGGGTTTCGGCACATCTTCATTTTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGT
259 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
* *
15579717 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTTTCTAT
324 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
15579782 TTTTCACGATTTTTAAAACTTTTTACGGTTC-ATGATTTTTTAAACTTTTTTCAGAAGGGGTTTT
389 TTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAACTTTTTTCAGAAGGAGTTTT
* * * *
15579846 GGCCCCAAACTTGGTAGACGTGTTCCTTGTACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAC
453 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
15579911 AACTCAAAATGTACCAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATG
518 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
15579976 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
583 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
15580041 AAGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCGCACAC
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * *
15580105 CCCCCCGGCCCCCACGATCAACGGAACCCCAATGCTGCCGGGT-AGGTTCTCCAACGATGGTGTC
713 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC-GGTCAGGTTCTCCGACGATGGTGTC
* * * * * *
15580169 CCGGTGAAGAAAAATATGACACCAGCACCTGCTCGAGCCCAACATGTGATGCCGCAA-CC-C-TC
777 CCGATGAAGAAAAATACGGCACCAGCACATGCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGTC
15580231 GGT-C---C-------GG--T---C--CG-AT-CTTAGACTGGGA
841 GGTCCGATCTTAGATGGGAATGAACTTCGTATGCTTAGACTGGGA
* * * * *
15580256 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGAGTTCAGCCGGTCAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
** * * * * * * *
15580321 CGGGATGCGCAAGTTGGGGGTCGATCGGGTCCCCCTCTACGTGCTACCGATCCTATTGCCACAAC
66 C-GGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAAC
* * * *
15580386 CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCTAACCGATGAAACGA
130 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
**
15580451 ----AAGGGCGGGC--G--CTACG-CTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
195 GCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* ***
15580507 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGATGTGCCAATGCCATTTTTCTGGCTTGT
259 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
* * *
15580572 AAATTCAAACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
324 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * *
15580637 TTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAACTTTTTTTAGTAGGAGCTTTG
389 TTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTG
* * * * *
15580702 GCCCCAAACTGGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCATAAAAAAATTCAGTTAACA
454 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
15580767 ACTCGAAGTGTACAACATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAATGG
519 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
15580832 CTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
584 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
15580897 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCCCCCATCGTACATCATGTGCGCACA-C
649 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
15580961 CCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCAGGTCAGGTTTTCCGACGATGGTGTCCC
714 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCC
* * * *
15581026 AACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCCGCAACCCTCGGTCC
779 GATGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-C
* *
15581091 GATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA-TAGGGA
841 GGTCCGATCTTAGA-TGGGAATGAACTTCGTATGCTTAGACT-GGGA
* *
15581137 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAG-GGGT
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGG-
* * * * * * * *
15581200 G-GGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGTTGCCAATCTTACTATCACAAC
65 GCGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAAC
* ** * *
15581264 CCTCGGTCTGATCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA
130 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
15581329 GCGTGCTGGCAGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCATGCCGTGGATCGATAGG
195 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
15581394 GTAGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCCCTGGCAATGCCATTTTTCTGGCTTGTA
260 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTA
* * *
15581459 AATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATT
325 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * *
15581524 TTTCACGATTTTTGAAACTTTTTACACTTCTG-GATTTTTTAAAATTCTTTCAGAAGGAGTTTTG
390 TTTCACGATTTTTAAAACTTTTTACGGTTC-GAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTG
* * *
15581588 GCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCA-AAAAAAATTTCAGCTAAA
454 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAA
15581652 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
518 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
15581717 GCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
583 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* **
15581782 ATGAGGGATAGGGGGCCAATATAATGGCCAAGTAAAAGCACCCATCGCACATCATGTGCGCACAC
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
15581847 CGCCCCGACCACCCCCGATCGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTC
713 CCCCCCGGCC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTC
* *
15581912 CCGACGAAGAAAAATACAGCACCAGCACATGTCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGT
777 CCGATGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGCCGCAACCCTC-G-
*
15581977 TCGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGA
839 TCGGTCCGATCTTAGA-TGGGAATGAACTTCGTATGCTTAGACTGGGA
* * * * *
15582025 ATGAACTACGTATTCCTAAGTGAACCCATGGAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
*
15582090 CGGCATGCGCAAGCCGAGGATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCCTACTGCCGCAAC
66 CGG-ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAAC
** * * * *
15582154 CCTCAATCTGGTCTGATCTTAGACTGGGAATTAACTCCATATGCCTAAGCCAACCGATGAAACAA
130 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
15582219 GCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATAGG
195 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
*
15582284 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGCCTTGTA
260 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTA
*
15582349 AATTCATACAATGTTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
325 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
15582414 TTTCACGATCTTTAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGATTTTTGG
390 TTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGG
** *
15582479 CAACGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
455 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
15582544 ATTGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGC
520 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
15582609 TACTGGCAGCAAACCTGTAAAAT-TGCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGA
585 TACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
15582673 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGGACATCATTTGCGTACA-C
649 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
15582737 CCCCCAGCCCCCCCGATCGTAGGAACCCCAACGCCCCCGGTCAGGTTCTCCGGCGATGGTGTCCC
714 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCC
* * * * *
15582802 GGTGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTACCGGAACCCTCGGTCT
779 GATGAAGAAAAATACGGCACCAGCACA-TGCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC-
* *
15582867 GGTCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
841 GGTCCGATCTTAGA-TGGGAATGAACTTCGTATGCTTAGACTGGGA
* * * * * *
15582913 ATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAACGCGCGAGCTCTCAGCTGGCTAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
* * * ** * *
15582978 CGGGATGCGCAAG-CGAGGGATCGGTCAGGTCCCCCTTTGCGTGCTATCGATCCTGCTACCGTAA
66 C-GGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAA
* * * * * *
15583042 CCCTCGGTTTGGT-TCGATCTTAGACTGGGCATGAACTCTGTATGCCTAAGTCGACCGACGAAAT
129 CCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
15583106 GAGCGGGCGGGCGGGCAGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
193 GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * * * *
15583171 GGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTTCCATGCCAATGACATTTTTTTGGCTTG
258 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
15583236 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
323 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
15583301 TTTTTCACGATTTTCAAAACTTGTTACTGTTC-AGGATTTTTTAAAATTTTTTTAGAAGGAGTTT
388 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAACTTTTTTCAGAAGGAGTTT
* *
15583365 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAA
452 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
15583430 AAACTTGAAGTGTAAAAGATTTTGAGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
517 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
15583495 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCAAGGTTT
582 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15583560 GATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACA
647 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** * ** *
15583625 CCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCACCGGTGTTGGTGT
712 CCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGT
* * * * * * * * * *
15583690 CCTGGTGAAGAAAAATGCAGCACCAACACATGCTCGAGCGCAGTATGTGCAGCTGTAA--C-C--
776 CCCGATGAAGAAAAATACGGCACCAGCACATGCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGT
*
15583750 C--T-C-A--TT--CT-GG--T---C-T-G-AT-CTTAGACTGGGA
840 CGGTCCGATCTTAGATGGGAATGAACTTCGTATGCTTAGACTGGGA
* * * * * *
15583778 ATGAACTCCATACGCCTAAGTGAACCCAAGAAACGAGCGTACGGGCGCTCAGCTGGCCAAAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
* * *
15583843 CAGGATACGCAAGCC-AGGGATTGACCGGGTCCCCCTCTGCGTGCTGCC-A--C-A-T-------
66 C-GGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAA
* * * *
15583895 CCCTCGGTCCGGTGC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAAT
129 CCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
15583959 GAGCGGGCGGGCGGGCGGACACTACGCCGGGCAGAGAGGCGAGTTGTGCAAGCCGTGGATCGATA
193 GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
15584024 GGGTGGTAAGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
258 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTG
* *
15584089 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGCAAGACGACTCGTTTTATA
323 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
15584154 TATTTT-ATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAC-TTTTTCAGAAGGAGTTT
388 T-TTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGAGTTT
*
15584217 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAA
452 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
15584282 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAC
517 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
15584347 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTT
582 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
15584412 GATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGTGCACA
647 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
15584477 CCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCC-AGCGATGGTGT
712 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGGTGT
* ** * * *
15584540 CCCGAAGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTCCCGTAACCTTCGA
776 CCCGATGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGCCGCAACCCTCG-
*
15584605 TCTGGTCCGATCTTAGATGGGAATGAACTTGGTATGCTTAGACTGGGA
839 TC-GGTCCGATCTTAGATGGGAATGAACTTCGTATGCTTAGACTGGGA
* * * * * ***
15584653 ATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTACGGGCGCCCAGCCAACCAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
* * * * * * *
15584718 CGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCTTCTACGAGCTGCCGATCCTA-TGTCCGCAA
66 C-GGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-ACCGCAA
* ** *
15584782 CCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACG
129 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
15584847 AGCGCGCGGGC
194 AGCGGGCGGGC
15584858 TCTCAGCCGG
Statistics
Matches: 4009, Mismatches: 479, Indels: 204
0.85 0.10 0.04
Matches are distributed among these distances:
850 91 0.02
851 5 0.00
852 264 0.07
853 265 0.07
854 8 0.00
855 530 0.13
856 30 0.01
857 2 0.00
859 9 0.00
860 5 0.00
861 1 0.00
862 1 0.00
863 162 0.04
864 3 0.00
865 105 0.03
866 5 0.00
867 1 0.00
868 1 0.00
869 1 0.00
871 1 0.00
872 4 0.00
873 1 0.00
874 5 0.00
875 108 0.03
876 1 0.00
877 1 0.00
878 108 0.03
879 7 0.00
880 19 0.00
881 51 0.01
882 7 0.00
884 1 0.00
885 8 0.00
886 447 0.11
887 80 0.02
888 408 0.10
889 585 0.15
890 555 0.14
891 123 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG
CGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACC
CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGA
TGAAGAAAAATACGGCACCAGCACATGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGGTCC
GATCTTAGATGGGAATGAACTTCGTATGCTTAGACTGGGA
Found at i:15582906 original size:26 final size:26
Alignment explanation
Indices: 15582877--15582927 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15582867 GGTCCGATCA
15582877 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15582903 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15582928 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15584665 original size:26 final size:25
Alignment explanation
Indices: 15584616--15584667 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15584606 CTGGTCCGAT
**
15584616 CTTAGATGGGAATGAACTTGGTATG
1 CTTAGATGGGAATGAACTCCGTATG
15584641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGA-TGGGAATGAACTCCGTATG
15584667 C
1 C
15584668 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCCGTATG
Found at i:15584930 original size:159 final size:159
Alignment explanation
Indices: 15584641--15584990 Score: 422
Period size: 159 Copynumber: 2.2 Consensus size: 159
15584631 ACTTGGTATG
* * *
15584641 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTACGGGCGCCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGCACGGGCGCCCAGC
15584706 CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCTTCTACGAGCTGCCGATCC
66 CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCTTCTACGAGCTGCCGATCC
* *
15584771 TATG-T-CCGCAACCCTCAGTCTGG-TCTGAT
131 --TGCTACCGCAACCCTCAGTCCGGCCCT-AT
* * * * *
15584800 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGCGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGCACGGGCGCCCAGC
** * ** * * *
15584865 CGGCTAGAGGGGCGGGATGCGCAAG-CGTGGGATTGGTCGGGTCCCCCTT-TGCGTGCTGTCGAT
66 CAACCAGAGGGGCGGGATGCGCAAGCCG-GGGATTGACCGGGT-CCCCTTCTACGAGCTGCCGAT
* * *
15584928 CCTGCTACCGTAACCCTCGGTCCGGCCCTTT
129 CCTGCTACCGCAACCCTCAGTCCGGCCCTAT
*
15584959 CTTAGACTGGGAATGAACTCTGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
15584991 CCGAGCGACG
Statistics
Matches: 164, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
157 2 0.01
158 3 0.02
159 151 0.92
160 8 0.05
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGCACGGGCGCCCAGC
CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCTTCTACGAGCTGCCGATCC
TGCTACCGCAACCCTCAGTCCGGCCCTAT
Found at i:15586543 original size:26 final size:25
Alignment explanation
Indices: 15586506--15586557 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15586496 CTGATCCGAT
*
15586506 CTTAGATGGGAATGAACTTGGTATG
1 CTTAGATGGGAATGAACTTCGTATG
15586531 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGA-TGGGAATGAACTTCGTATG
15586557 C
1 C
15586558 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTTCGTATG
Found at i:15586740 original size:26 final size:26
Alignment explanation
Indices: 15586690--15586742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586680 CCGGTCCGAT
**
15586690 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15586716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15586742 C
1 C
15586743 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15586830 original size:185 final size:185
Alignment explanation
Indices: 15586500--15586901 Score: 608
Period size: 185 Copynumber: 2.2 Consensus size: 185
15586490 TTCAGTCTGA
* *
15586500 TCCGATCTTAGA-TGGGAATGAACTTGGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
15586564 CAACCCACGAAACAAGCGTGTGGGCGCCCAGCCAACCAGAGGGGCGGGATGCGCAAGCCGGGGAC
66 CAACCCACGAAACAAGCGCGCGGGCGCCCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAAGGAC
* *
15586629 CGATCGGGTACCCCTTTACGAGCTGTCGATCCTGCTACTGTAACCCTCGGTCCGG
131 CGATCGGGTACCCCTTTACGAGCTATCGATCCTGCTACCGTAACCCTCGGTCCGG
15586684 TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * ** ** *
15586749 GAACCCACGAAAGGAGCGCGCGGGCGCTCATTCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGAT
66 CAACCCACGAAACAAGCGCGCGGGCGCCCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAAGGAC
* *
15586814 CGATCGGGTCCCCCTTTACGTGCTATCGATCCTGCTACCGTAACCCTCGGTCCGG
131 CGATCGGGTACCCCTTTACGAGCTATCGATCCTGCTACCGTAACCCTCGGTCCGG
* *
15586869 TCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TCCGATCTTAGACTGGGAATGAACTTTGTATGC
15586902 CTAAGCCGAC
Statistics
Matches: 196, Mismatches: 21, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
184 12 0.06
185 184 0.94
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (185 bp):
TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACAAGCGCGCGGGCGCCCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAAGGAC
CGATCGGGTACCCCTTTACGAGCTATCGATCCTGCTACCGTAACCCTCGGTCCGG
Found at i:15587611 original size:26 final size:26
Alignment explanation
Indices: 15587581--15587633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15587571 CTGGTCCGAT
15587581 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
15587607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
15587633 C
1 C
15587634 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:15588467 original size:26 final size:26
Alignment explanation
Indices: 15588438--15588490 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588428 CCGCTCCGAT
15588438 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15588464 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15588490 C
1 C
15588491 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15588656 original size:70 final size:70
Alignment explanation
Indices: 15588529--15588670 Score: 185
Period size: 70 Copynumber: 2.0 Consensus size: 70
15588519 GGGGCTAAGC
* * *
15588529 CCGCCAGAAGGGCAGGATGCACAAGCCGGGGATCGATCGGTTCCCCCTTTGCGTGCTGCCGACCC
1 CCGCCAGAAGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAACCC
15588594 TGCTG
66 TGCTG
* * * * * * * *
15588599 CCGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTGCCCCTCTGTGTGCTGCCAACCC
1 CCGCCAGAAGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAACCC
15588664 TGCTG
66 TGCTG
15588669 CC
1 CC
15588671 ACAACCCTCG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.13, C:0.33, G:0.36, T:0.18
Consensus pattern (70 bp):
CCGCCAGAAGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAACCC
TGCTG
Found at i:15590584 original size:185 final size:185
Alignment explanation
Indices: 15590257--15590616 Score: 510
Period size: 185 Copynumber: 1.9 Consensus size: 185
15590247 GGTCCGATCA
** *
15590257 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCG
1 TAGACTGGGAAAAAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCG
* ** *
15590322 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATTGGTTGGGTCCCCCTCTGTGTGTCGTCGATCCTA
66 GCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTTGGGTCCCCCTCTGTGTGTCGTCGATCCTA
* *
15590387 CTACCGCAACCCTCGGTCCGGTCCGATTTTAGACTGGAAATGAACTCCTTATGCT
131 CTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCTTATGCT
* * *
15590442 TAGACTGGGAAAAAACTCCGTCTGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAAAAAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCG
*
15590507 GCCAGAGGGGCTGGATGCACAAGCCAGGGATCGGTTGGGTCCCCCTCTACGTGCTG-C-T-GATC
66 GCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTTGGGTCCCCCTCT--GTG-TGTCGTCGATC
* * * * *
15590569 CTGCTATCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
128 CTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAAC
15590617 ATTGTATACC
Statistics
Matches: 154, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
185 147 0.95
186 1 0.01
187 4 0.03
188 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (185 bp):
TAGACTGGGAAAAAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTTGGGTCCCCCTCTGTGTGTCGTCGATCCTA
CTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCTTATGCT
Found at i:15593164 original size:864 final size:862
Alignment explanation
Indices: 15591321--15593360 Score: 2919
Period size: 863 Copynumber: 2.4 Consensus size: 862
15591311 ACTCCGTATT
15591321 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGT
1 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGT
* * *
15591386 GAGTTCTCGAGGTTTGATGTGGGAT-GGGCGGCCAATATAAGGGCCAAGTACCAGCACCCAACGC
66 GAGTTCTCGAGGTTTGATGAGGGATAGGG-GGCCAATATAAGGCCCAAGTACCAGCACCCATCGC
* * * * *
15591450 ACATCATATGCGTACACCCTCTCCGGCCCCCCCGATCGCC-AAAACCCTAATGCCACCGGTCAGG
130 ACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGCCGAAACCCCT-ATGCCGCCGGTCAGG
** * *
15591514 TTCTCCGGTGATGGTTTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
193 TTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
15591579 GTTGCCGCAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAAC
258 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATACCCAAGTCAAC
* * * * *
15591644 CCACAAAACGAGCGTGCAGGCGCTCAGCTGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGT
323 CCACAAAACGAGCGTG-AGGCGCTCAGCCGGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGAT
* ** * * * *
15591709 CGAGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACT
387 CGAGTCCCCCACAACGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACT
* * * * * * * *
15591774 GGGAATGAACTCCGTATGCTTAAGTCAACTGATGAAACGGGCAGGCGGGCGGGCGGGCACTATGC
452 GGGAATGAAATCCGTATGCCTAAGCCAACTGACGAAACGGGCAGGCGGGCGGCCGAGAACTACGC
* * *
15591839 CTGCCAGAGAGGCGGGTTGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCA
517 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCA
* *
15591904 TCATATTTCTACTATGCCAATGCCATTTTTCTTGCTTGTAAATTCATACAATGGTCCCTTAAGCC
582 TCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * **
15591969 TTATTGTGAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
647 TTATTGTGAAGTTTCATGGCAAGACGACGCATTTTCTATTTTCCATGATTTTCAAAACTTTTTAC
* *
15592034 GGTTTGAGATTTTGTAAAATTTTTTCAAAAGCAGTTTTCACCCCAAACTTGGTAGACGTGATCCT
712 GGTTCGAGATTTTGTAAAATTTTTTCAAAAGCAGTTTTCACCCCAAACTTGGTAGACGTGATCCC
*
15592099 TGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
777 TGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
15592164 CATTTGAAAAAAGTGTCCCTA
842 CATTTGAAAAAAGTGTCCCCA
15592185 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTG
1 TTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTG
15592250 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGC
65 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGC
* * *
15592315 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCCGGAACCCCTATGCCGCCCGTCAGGTT
130 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCTATGCCGCCGGTCAGGTT
*
15592380 CTCCGACGATGGTGTCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
195 CTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
15592445 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGGCTGGGAATGAACTTCGTATACCTAAGTCAACCC
260 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATACCCAAGTCAACCC
* * * *
15592510 ACGAAACGAGCGT-AGGGGGCTCAGCCGGCCAGAGGGACGGGATGCAG-AAGTCGAGGATCGATC
325 ACAAAACGAGCGTGA-GGCGCTCAGCCGGCCAGAGGGACAGGATGC-GCAAGCCGAGGATCGATC
* * ***
15592573 GAGTCCCTCACAACGTGCTACCGATCCTACTACCGCAACCCTCTATTTGGTCTGATCTTAGACTG
388 GAGTCCCCCACAACGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTG
* * * *
15592638 GGAATGAAATCCGTATGCCTAAGCCAA-TCGCCGAAATGGGCGGGCGGGTGGCCGAGAACTACGC
453 GGAATGAAATCCGTATGCCTAAGCCAACT-GACGAAACGGGCAGGCGGGCGGCCGAGAACTACGC
*
15592702 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
517 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCA
*
15592767 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
582 TCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
15592832 TTCA-TGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTCCATGGTTTTCAAAACTTTTTA
647 TT-ATTGTGAAGTTTCATGGCAAGACGACGCATTTTCTATTTTCCATGATTTTCAAAACTTTTTA
* * * * ***
15592896 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCC
711 CGGTTCGAGATTTTGTAAAATTTTTTCAAAAGCAGTTTTCACCCCAAACTTGGTAGACGTGATCC
*
15592961 CTGTATTTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTGTG
776 CTGTATTTTTTTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
15593026 ACCATTTGAAAAAAGTGTCCCCA
840 ACCATTTGAAAAAAGTGTCCCCA
** * *
15593049 TTCTAGACACTTTAATGGCTACTTTCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTG
1 TT-TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTG
* * **
15593114 TGAGTTCTCGAGGTATGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTAC
65 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGC
* * ** * *
15593179 ACATCATGTGAGCACATCCCCCCCGACCCCCCCGATCGTTGAAACCTCAATGCCGCCGGTCAGGT
130 ACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGAAACCCCTATGCCGCCGGTCAGGT
* * *
15593244 TCTCC-AGCGATGGTGTCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGT
194 TCTCCGA-CGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * *
15593308 GCTGCCGAAACCCTTAGT-TCGGTCCGATTTTAGACTGGGAATGAA-TTCCGTAT
258 GCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTT-CGTAT
15593361 GCTTAGACTG
Statistics
Matches: 1051, Mismatches: 112, Indels: 25
0.88 0.09 0.02
Matches are distributed among these distances:
862 2 0.00
863 395 0.38
864 368 0.35
865 283 0.27
866 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (862 bp):
TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCTATGCCGCCGGTCAGGTTC
TCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATACCCAAGTCAACCCA
CAAAACGAGCGTGAGGCGCTCAGCCGGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGATCGAG
TCCCCCACAACGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGA
ATGAAATCCGTATGCCTAAGCCAACTGACGAAACGGGCAGGCGGGCGGCCGAGAACTACGCCGGC
CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCAT
ATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAT
TGTGAAGTTTCATGGCAAGACGACGCATTTTCTATTTTCCATGATTTTCAAAACTTTTTACGGTT
CGAGATTTTGTAAAATTTTTTCAAAAGCAGTTTTCACCCCAAACTTGGTAGACGTGATCCCTGTA
TTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCA
Found at i:15593366 original size:26 final size:26
Alignment explanation
Indices: 15593337--15593388 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15593327 CGGTCCGATT
*
15593337 TTAGACTGGGAATGAATTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
15593363 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15593389 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15593657 original size:159 final size:159
Alignment explanation
Indices: 15593362--15593711 Score: 472
Period size: 159 Copynumber: 2.2 Consensus size: 159
15593352 ATTCCGTATG
* *
15593362 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
15593427 TGGCCAGAGGAGCAAGATGCGCAAGCCAAGGATTGGTCGGGTCCCCCTCTGTGTGCTACCGATCT
66 CGGCCAGAGGAGCAAGATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * **
15593492 TGCTGCCGTAACCCTCAGTCTGGTC-CAA
131 TACTGCCGGAACCCTCAGTCCAGTCTCAA
* *
15593520 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * **
15593585 CCGGCCAGA-GAGTCGAA-ATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCTGCGTGCTGTCGA
65 CCGGCCAGAGGAG-C-AAGATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGA
*
15593648 TCCTACTGCCGGAACCCTCAGTCCAGTCTGAA
128 TCCTACTGCCGGAACCCTCAGTCCAGTCTCAA
*
15593680 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAG
15593712 CCAATCGATG
Statistics
Matches: 168, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
158 3 0.02
159 161 0.96
160 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGAGCAAGATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
TACTGCCGGAACCCTCAGTCCAGTCTCAA
Found at i:15594579 original size:26 final size:26
Alignment explanation
Indices: 15594543--15594595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15594533 CCGATCCATT
*
15594543 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15594569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15594595 C
1 C
15594596 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15594713 original size:185 final size:185
Alignment explanation
Indices: 15594384--15594746 Score: 512
Period size: 185 Copynumber: 2.0 Consensus size: 185
15594374 CTGGTCTGAT
* *
15594384 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
** * *
15594449 CGACCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGGGCTATCGATGC
66 CGACCAGAGGGGCGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCTCTGCGGGCTACCGATCC
* * *
15594514 TGCTGCCACAACCCTCGGTCCGATC-CATTCTTAGACTGGGAATGAACTCTGTATG
131 TACTGCCACAACCCTCGATCCGATCTCA-TCTTAGACTGGGAATAAACTCTGTATG
* *
15594569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* * * * * * *
15594634 CGGCTAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCGGGTTCCCCTCTGCGTGCTGCCGATCC
66 CGACCAGAGGGGCGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCTCTGCGGGCTACCGATCC
* * * *
15594699 TACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACT
131 TACTGCCACAACCCTCGATCCGATCTCATCTTAGACTGGGAATAAACT
15594747 ACGTCTGCAT
Statistics
Matches: 155, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
185 154 0.99
186 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGACCAGAGGGGCGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCTCTGCGGGCTACCGATCC
TACTGCCACAACCCTCGATCCGATCTCATCTTAGACTGGGAATAAACTCTGTATG
Found at i:15595468 original size:26 final size:26
Alignment explanation
Indices: 15595432--15595484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15595422 TCGGTCTGAT
*
15595432 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
15595458 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
15595484 C
1 C
15595485 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:15596352 original size:26 final size:26
Alignment explanation
Indices: 15596323--15596375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15596313 CTGGTCCGAT
* *
15596323 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15596349 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15596375 C
1 C
15596376 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15599809 original size:863 final size:861
Alignment explanation
Indices: 15594569--15601898 Score: 8149
Period size: 889 Copynumber: 8.4 Consensus size: 861
15594559 ACTCTGTATG
* ** *
15594569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15594634 CGGCTAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCGGGTTCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
15594699 TACTGTCGCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATAAACTACGTCTGCATAAGCCA
131 TGCTGTCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACT-CGT-AGCCTAAGCCA
* *
15594763 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCC
193 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
15594828 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
15594893 TTTCTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** * * * *
15594958 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCGGGATTTTTTCAAATTTTTTCA
388 CTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
* * * * * *
15595023 GAAGGA-TTTTTGCAACAAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
453 GAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
* *
15595087 AATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15595152 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
15595217 TCCCAAGGTTTGATGAGAGATAGGTGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
15595282 ATGTGCGCACACCCCCCGGCACCCCCCAATCGTCAGAACCACAATGCCATCGGTCAGGTTCTCCG
712 ATGTGCGCACACCCCCCGGC-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * * ** *
15595347 GCGATGGTGTCCCAAGGAAAAAAAAT-TGACACCAAC-CGATGCCCGAGCATAGCATGTGCTACC
776 GCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCC
15595410 GTAACCCTCGGTTCGGTCTGATCTTAAACTGGGAATGAACTCCGTAT
840 GTAA-CC-C---TC-G---G-TC-----C---G---G---TCCG-AT
* * *
15595457 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15595522 CCGACCAGAGGGGCGAGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTATTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
** * * *
15595587 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTC-GTA-GCCTAAGCCA
* * * * * *
15595652 ACCGACGAAACGAGTGGGCGAGTGGGCGGGCACTACACCGGCCTGAGAGGCGGGATGCGTAAGCC
193 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
15595717 GTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCCGTGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * * *
15595782 TTTTTGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGTAAGACGA
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
15595847 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTAGAGATTTTTTTAAATTTTTTCA
388 CTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
*
15595912 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATA
453 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACA
* * *
15595977 ATTCAGCTAAAAACTCGAAGTGTATAAGATTCTGTGACAATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
15596042 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGAGGGTGTGAGTT
583 ACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
15596107 CTCGAGGTTTGATGAGTGATAGTGGGCAAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
15596172 TGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCAAATACCGCCGATCAGGTTCTCCG
713 TGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* *
15596237 GCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATACCCGAGCCCTGCATGTGCTGCCG
776 GCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
*
15596302 TTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTAT
841 -TAACC-C--TC--G---G-TC-----C---G---G---TCCG-AT
* * *
15596348 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGATCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15596413 TCGGCCAGAGGGGCGGGATACGTAAGCTGGGGATCGGCTGGGTCCCCCTCTGCGTGTTTTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * *
15596478 CTGTTATCGCAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGTA-GCCTAAGCCA
** * ** * * *
15596542 ACTAACGAAACGA----GCGGGTGGGCGGGCACTACATCGGCTAGAGAGACGGGATGTGCAAGCC
193 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * * *
15596603 GTGGATCAATAGGGTGGTAGGCGGGTTTAGGCACATCTTTATATTTTTGCCATGCCAATGCAATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
15596668 TTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGGGAAATTTCATGGCAAGACGA
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* *
15596733 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-AGGATTTTTTAAAATTTTTTC
388 CTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC
* * * *
15596797 AGAAGGATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAA
452 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
* * * * *
15596862 AATTCAGCTAAAAACTCGAAGAGTAAAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCGTTAC-
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
15596926 GAACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAACGCTCTTTAAGGGGGTGTGAG
582 G-ACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
15596991 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
15597056 CATGTGCTCACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
711 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * * *
15597121 GACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGGCCAGCATGTGTTGCC
775 GGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
15597186 GTAACCCTCAGTCTGGTCCGAT
840 GTAACCCTCGGTCCGGTCCGAT
* * * * ** * ** ** ****
15597208 CTTAGACTAGGAATGAACTCCATATGCTTAGATTGGGA---ATG-AACTCTGTATGCCTAAG-TC
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGT-CAACCCACGAAAC-GAGCGTGCGGGCGCTC
* ** * * * * * * * * * * ** * ** *
15597268 AACCCACGAAATGAGCGTG-TGGGTCACA-CTCTGTG-TGCTACC-GATCCTGCTAT-CGCAACC
63 AGCCGGCCAGAGGGGCGGGATGCG-CA-AGC-CGGGGAT-CGACCGGGTCCCCCTCTGCG-TGCT
* * * * * * * * * ** *
15597328 CTCGATCC-GGT-TTG--A-TCTTAGACTGG---GA-ATGA-ACTCCGTATG--C-C-TAAGCC-
123 GTCGATCCTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCGT-AGCCT
* ******* * * *
15597378 AACCGGTGAATC--AA--A-CGGGTGGGCGGGCGGGCACAACGCTGGCCAGAGAGGCGGGATGCG
187 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
* * *
15597438 TAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
252 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
*
15597503 GCGATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
317 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* *
15597568 AGACGACTCGTTTTCCATTTTTCATGATTTTTCAAACTCTTTACGGCTT-GAGATTTTTTAAAAT
382 AGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGG-TTCGAGATTTTTTAAAAT
15597632 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
446 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
** *
15597697 CAAAACAATTCAGAGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCC
511 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
15597762 ATTTCAGACACTCTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
576 ATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
15597827 ATGAGTTCTCGAGGTTTGATTAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
641 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** ** * * *
15597892 CACATCATGTGCGCACACCCCCCAGATCACCCTTGATCACCGAAACCCCAAAGTCGTCGGTCAGG
706 CACATCATGTGCGCACACCCCCC-G-GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
15597957 TTCACCGGTGATGGTGTCTCGACGAAGAAAAATACGGCACCAGCAAATGCCCAAGCCTAGCATGT
769 TTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
15598022 GTTGCCGCAACCCTCGGTCTGGTCCGAT
834 GCTGCCGTAACCCTCGGTCCGGTCCGAT
*
15598050 CTTAGACTGGGAATGAACTCCGTATG-CTAAGATTCAGAATGAACTCGGTACGCCTAAGTTAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG--TC-------A------AC-CC-ACG--AA--
* * * * **
15598114 TACAAAATGAGCGTGCAGGCGCTCAGCTGGCCATAGGGGCGGGATGCACAAGCCGGGGATCGGTC
45 -AC-----GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC
* * * * *
15598179 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTG-CTGCAACCCTCGGTCTGGT-TCAATCTTAGAC
104 GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTCAGTCCGGTCT-GATCTTAGAC
* * * * *
15598242 TGGGAATGAACTCTGTTTGCCTAAGCCAACCGATGAAACGAGCCGGCGGGCGAGCGAGCACTACG
167 TGGGAATGAACTC-G-TAGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACG
** *
15598307 CCGGCCAGAGAGGCTTGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
230 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
15598372 TTCATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGC
295 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15598437 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTA
360 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTA
* * *
15598502 CGGCTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCC
425 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* ** *
15598567 TTGTATTTTTGTTGG-ATGCAGAAAACAATTCAGCGGAAAACTCAAAGTGTACAAGATTTTGTGA
490 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15598631 CCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATC
555 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATC
15598696 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
620 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
15598761 GCCAAGTACCAGCACCCATCACACATCTTGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAAC
685 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
* * ** * *
15598826 CCCAATGTCGTCGGTCAGGTTCTCAGGCGATGGTGTTTCGGCGAAGAAAAATACGACACCAGCAC
750 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCAC
*
15598891 ATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGAT
815 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGAT
* *
15598938 GTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
15599003 CGACCAGAGGGGTGGGATGCACAAGCAGTGGATCGGCCGGGTCCCCCACTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
15599068 CGCTGTGGTAACCTTCAGTCCGGTCTGATCTGAGACTGGGAATGAACTCGATAGCCCTAAGCCAA
131 TGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCG-TAG-CCTAAGCCAA
* ** * * * * * * * *
15599133 CCGATGAAACGAGCGGGCGACCGAGAGGGCAATAGGTCGGCTAGAGAGACGGGATGTGCAAGCCG
194 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* *
15599198 TGGATCGATAAGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
15599263 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGAC
324 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
15599328 TCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCAG
389 TCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
* *
15599393 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCAGAAAACAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
** * *
15599458 TTCAGCGGAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCATA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
15599523 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15599588 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCTT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
15599653 GTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCAGGCG
714 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * *
15599718 ATGGTGTCCTGGCGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAA
779 ATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
*
15599783 CCCTCGGTCCGGTCTGAT
844 CCCTCGGTCCGGTCCGAT
* * *
15599801 CTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
15599866 CGGCCAGAGGGGTC-GGATGCGCAAGTAGGGGATCGATCGGGTTCCGCACTGCGTGCTGTCGAT-
66 CGGCCAGAGGGG-CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* *
15599929 CTCGCTGTGGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCGATAGCCCTAAGCC
130 CT-GCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCG-TAG-CCTAAGCC
* * * * * * * *
15599994 AACCGATGAAACGAGCGGGCGGCCGGGAGGGCAATAGGCCGACCAGAGAGACGGGATGTGCAAGC
192 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* *
15600059 CGTGGATCGATAAGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
15600124 TTTTCTGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-
322 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15600188 ACTCGTTTTCTATTTTTCAAGA-TTTTCAAAACTTTTTATGGTTCGTGATTTTTTAAAATTTTTT
387 ACTCGTTTTCTATTTTTCATGATTTTTC-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
15600252 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGACATGCACAAAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
15600317 -ATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACGATTTCAAAAATGTGTCCCCATTT
516 CA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15600381 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGT
580 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15600446 GTTCTCGAGGTTTGATGAGGGATAGGGGG-CAACTATAAGGGCTAAGTACCAGCACCCAACGCAC
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15600510 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCG-CTGATCAGGTTC
709 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTC
* ** * *
15600574 TCCGGAGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCAGAGCCCAGCTTGTGCT
772 TCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * *
15600639 GCCACAACCCTCGGTCTGGTCGGAT
837 GCCGTAACCCTCGGTCCGGTCCGAT
15600664 CTTAGACTGGGAATGAACTCCGTATGCTAAGATTCAGAATGAACTCCGTATGCCTAAGTCAACCC
1 C-T----T----A-G-A---C---TG----G-----GAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * **
15600729 ACAAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* * * * * * * * * **
15600794 GATCTCCCTCTGCTTGTTGCCGATCTTGCTGTCACAACCCTC-GATTCGATCCAATCTTAGACTG
105 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAG-TCCGGTCTGATCTTAGACTG
* * * * * * * *
15600858 GGAATGAACTTCGTATGCCTAAACCAACCGACAAAACGGGTGGACGGGTGGGGGGGCACTACACC
169 GGAATGAAC-TCGTA-GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * *
15600923 GGCCAAAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTT
232 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
15600988 CATATTTCTACTAAGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGCCCCTTAAGCCT
297 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
15601053 TCATGAGAAGTTTAATGGCAAGACGACTCCTTTTCTATTTTCCATGATTTTTGAAACTTTTTACG
362 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACG
* * *
15601118 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGAGGTGATCCTT
427 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
15601183 GTATTTTTTTTTGGCATGCACAATAA-AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
492 GTA-TTTTTGTTGGCATGCACAA-AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
** * * *
15601247 CCATTTGAAAAAAGTGTCTGCATTTCAGACAATTTAATAGCTACTGGCAGCAAATCTATAAAATC
555 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATC
* *
15601312 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGA
620 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * ** ****
15601377 GCCAAGTGCCAGCACCAATCACACATCATGTGCGCACACCCCGGTGATGGTGTCCCG---G--GG
685 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG--GCCCCCCCGATCGTCGG
**** * ** * ** * *****
15601437 AAGAAAAAT-ACG--GCACAAGCACATGCC--CGA----G-CCC-A-GCATGTGCTGT-C-GCAA
747 AACCCCAATGCCGTCGGTCAGGTTC-T-CCGGCGATGGTGTCCCGACG-AAGAAAAATACGGC-A
* ** ** * * **** *
15601488 CC--C-CAGGTTCG-GTTC-G-ATCTTAGACTG--GGAATAAAC--TCC-AT---AT
808 CCAGCACATGCCCGAGCCCAGCAT-GT-G-CTGCCGTAACCCTCGGTCCGGTCCGAT
* * *
15601531 GCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15601596 TCGGCCAAAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCGTCTGCGTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * *
15601661 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGTA-GCCTAAGCCA
* * * *
15601726 ACCGACGAAACGAACGGGCGGGCGGGTGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
193 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * **
15601791 GTGGATCAATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* *
15601856 TTTTTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCAT
323 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
15601899 ATGCCTAAGT
Statistics
Matches: 5577, Mismatches: 712, Indels: 351
0.84 0.11 0.05
Matches are distributed among these distances:
838 1 0.00
840 9 0.00
841 465 0.08
842 446 0.08
843 5 0.00
844 2 0.00
846 1 0.00
847 1 0.00
848 7 0.00
849 2 0.00
850 2 0.00
851 2 0.00
852 3 0.00
853 4 0.00
854 1 0.00
855 2 0.00
856 6 0.00
857 32 0.01
858 13 0.00
859 29 0.01
860 4 0.00
861 16 0.00
862 713 0.13
863 826 0.15
864 2 0.00
865 2 0.00
867 6 0.00
868 2 0.00
869 12 0.00
870 33 0.01
871 7 0.00
872 5 0.00
873 8 0.00
874 7 0.00
875 16 0.00
876 2 0.00
877 3 0.00
878 5 0.00
879 6 0.00
880 13 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 5 0.00
885 120 0.02
886 472 0.08
887 6 0.00
888 149 0.03
889 961 0.17
890 439 0.08
891 684 0.12
892 9 0.00
893 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (861 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCGTAGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
GGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
CTCGGTCCGGTCCGAT
Found at i:15601542 original size:26 final size:26
Alignment explanation
Indices: 15601506--15601558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15601496 TCGGTTCGAT
15601506 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
15601532 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
15601558 C
1 C
15601559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15602179 original size:344 final size:344
Alignment explanation
Indices: 15601552--15602242 Score: 1051
Period size: 344 Copynumber: 2.0 Consensus size: 344
15601542 GAATGAACTC
* * *
15601552 CATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAAGGGCGGGATGC
1 CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGGGATAC
*
15601617 GCAAGCCGGGGATCGGCCGGGTCCCCGTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
66 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
* * *
15601682 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGCGG
131 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAACGGGCGG
* * * * *
15601747 GCGGGTGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGG
196 ACAGGCGGGCACAACGTCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGG
* ** * *
15601812 TAGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATA
261 TAGGTTTAGGCACATCTTCATATTTATGCCATGCCAAAGCCATTTTTCTGGCTTGTAAATTCATA
*
15601877 CAGTGGTCCCTTAAGCCTT
326 CAATGGTCCCTTAAGCCTT
* * *
15601896 CATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATAC
1 CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGGGATAC
* * * * *
15601961 GCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTC
66 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
* * * * *
15602026 CGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCTAATCGACAAAACGAGCGGGCGG
131 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAACGGGCGG
** *
15602091 ACAGGCGGGCAGTACGAT-GGCCAGAAAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
196 ACAGGCGGGCACAACG-TCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAG
*
15602155 GTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAAAGCCATTTTTCTGGCTTGTAAATTCAT
260 GTAGGTTTAGGCACATCTTCATATTTATGCCATGCCAAAGCCATTTTTCTGGCTTGTAAATTCAT
15602220 ACAATGGTCCCTTAAGCCTT
325 ACAATGGTCCCTTAAGCCTT
15602240 CAT
1 CAT
15602243 GTGAAGTTTC
Statistics
Matches: 311, Mismatches: 35, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
344 310 1.00
345 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (344 bp):
CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGGGATAC
GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAACGGGCGG
ACAGGCGGGCACAACGTCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGG
TAGGTTTAGGCACATCTTCATATTTATGCCATGCCAAAGCCATTTTTCTGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTT
Found at i:15603070 original size:343 final size:345
Alignment explanation
Indices: 15602429--15603115 Score: 1051
Period size: 343 Copynumber: 2.0 Consensus size: 345
15602419 CAAGATTTTG
15602429 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
15602494 ATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
66 ATCTCAAATGCTCTTTAAGGGTGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
15602559 GGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACCCCGGCCCCCCGGATCGCC
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCCGGCCCCCCGGATCGCC
* *
15602624 AGAACCCTAACGTCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATGCGGCACC
196 AGAACCCCAACGCCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATGCGGCACC
* * *
15602689 AGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAA
261 AGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
*
15602754 TGAACTCTGTATGCCTAAGT
326 TGAACTCCGTATGCCTAAGT
* * *
15602774 TGACCATTTGAAAAAAGTGTCCCCGTTTCAAACATTTTAATGGCTACTGGCAGCAAACTTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
15602839 ATCTCAAATGCTCTTTAAGGG-GTGTCAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCTAATAT
66 ATCTCAAATGCTCTTTAAGGGTGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATAT
*
15602902 AAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCC-CCCCGGCCCCCTC-GATCG
130 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCCGGCCCCC-CGGATCG
** * ** * * * * *
15602965 CTGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGACGATGGTGTCCCGGCGTAGAAAAATGGGGC
194 CCAGAACCCCAACGCCACCAGTCAGGTTCTCCAG-CGATGGTGTCCCGACGAAGAAAAATGCGGC
* * * * *
15603029 ACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGGCTGG
258 ACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
15603094 GAATGAACTCCGTATGCCTAAG
323 GAATGAACTCCGTATGCCTAAG
15603116 CCAACCGATG
Statistics
Matches: 310, Mismatches: 29, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
342 2 0.01
343 149 0.48
344 76 0.25
345 83 0.27
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (345 bp):
TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGTGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCCGGCCCCCCGGATCGCC
AGAACCCCAACGCCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGT
Found at i:15604229 original size:169 final size:172
Alignment explanation
Indices: 15603940--15604262 Score: 456
Period size: 169 Copynumber: 1.9 Consensus size: 172
15603930 ACAACCGTCA
* * *
15603940 GTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACAGACAAAAGGAGCAGG
1 GTCCGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAA-GAGCAGG
* * *
15604005 CGGGCGGACGGGCACTACGCCAGCCAGACAGGTGGGATGCGGAACTCGTGGATCGATAGGGTGGT
65 CGGGCGGACGGGCACTACGCCAGCCAGACAGGCGAGATGCGCAACTCGTGGATCGATAGGGTGGT
15604070 AGGTGGGTTTAGGCACATCTTCATGTCTCTACCGCAACCCTTG
130 AGGTGGGTTTAGGCACATCTTCATGTCTCTACCGCAACCCTTG
* * * * *
15604113 GTCCGATCCGAACTTATACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CG-A-GC
1 GTCCGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAAGAGCAGGC
* *** *
15604175 GGGCGGACGGGCACTGCGTTGGCCAGATAGGCGAGATGCGCAAGC-CGTGGATCGATAGGGTGGT
66 GGGCGGACGGGCACTACGCCAGCCAGACAGGCGAGATGCGCAA-CTCGTGGATCGATAGGGTGGT
15604239 AGGTGGGTTTAGGCACATCTTCAT
130 AGGTGGGTTTAGGCACATCTTCAT
15604263 ATTTTTGCCG
Statistics
Matches: 133, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
169 80 0.60
170 2 0.02
171 1 0.01
173 50 0.38
ACGTcount: A:0.24, C:0.24, G:0.33, T:0.20
Consensus pattern (172 bp):
GTCCGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAAGAGCAGGC
GGGCGGACGGGCACTACGCCAGCCAGACAGGCGAGATGCGCAACTCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATGTCTCTACCGCAACCCTTG
Found at i:15606065 original size:864 final size:862
Alignment explanation
Indices: 15604125--15607481 Score: 4099
Period size: 864 Copynumber: 3.9 Consensus size: 862
15604115 CCGATCCGAA
* *
15604125 CTTATACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
** * * * *
15604186 CACTGCGTTGGCCAGATAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15604251 GCACATCTTCATATTTTTGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
* * *
15604316 CTTAAGCCTTCATGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
** * * *
15604381 CTTTTTACTGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGAC
261 CTTTTTAAGGTTCGAGATTTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15604446 GTGATCCTTGTAATTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGAT
326 GTGATCCTTGT-ATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
15604511 TTTGAT-ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
390 TTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
* * * *
15604575 GTAAAATCTCAAATGCTCTTCAAGGGGTGCGAGTTCCTGAGGTTTGATGGGGGATAGGGGGCCAA
454 GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAA
* *** *
15604640 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGG--CTGGCAAT
519 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGTCCCCCCGAT
* ******* * * * * * **
15604702 -G--GTG-ACCCGATAAAAAAAATGC-GG--CACC-A-GCACA-TG-CCCGAGGCCAG-TATGTG
584 CGCCG-GAACCCAATACCGCCGGT-CAGGTTCTCCGACG-ATAGTGTCCCGACG-AAGAAAAAT-
* * * * * * * * * * * * * * *
15604755 ATGCCA-TAACCCTTGGTCCGATCCGATCTTAG-ACTA--GGAA----TGAACTCC-ATAT-G--
644 ACGGCACCAGCACATGCT-CGAGCCCAGC-AAGCGCTACCGTAACCCTTG--GTCCGATCTCGAT
* * * * *
15604808 GTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCAGT
705 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
15604873 CGACCAGTGGGGCGGGATGCGCAAGCCGGGGATC-AACTGGGTCCCCCTCTGCATGCTACCGATC
770 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGAC-GGGT-CCCCTCTGCGTGCTACCGATC
* ** * *
15604937 CTACTGCCGCAACCCTTGGTCTGGTCCGAT
833 CTGCTGCCGCAACCCTCAGTCTCGTCTGAT
* * * *
15604967 CTTATACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
* * * * *
15605032 CACT-TCGTTGGCCAGATAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGTTGGGTTTA
66 CACTAT-GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15605096 GGCACATCTTCATATTTCTGCCATGCCAATGCTATTTGTTTGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTC
*
15605161 CCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
*
15605226 ACTTTTTAAGGTTCGACATTTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTAAGGTTCGAGATTTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
15605291 CGTGATCCTTGTATTTTTCTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACGAGA
325 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15605356 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGGTACTGGAAGCAAACCA
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
15605421 GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAA
454 GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAA
*
15605486 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGTCCCCCCGAT
519 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGTCCCCCCGAT
* *
15605551 CGCCGGAACGCCAATACCGCCGGTCAGGTTCTCCGACGATAGTGTCCCGACGAATAAAAATATGG
584 CGCCGGAAC-CCAATACCGCCGGTCAGGTTCTCCGACGATAGTGTCCCGACGAAGAAAAATACGG
* * *
15605616 CACCAGCACATGCTCGAGCCCAGCAAGCGCCACCGTAACCCTTGGTCCGGTCT-GATCTGAGACT
648 CACCAGCACATGCTCGAGCCCAGCAAGCGCTACCGTAACCCTTGGTCCGATCTCGATCTTAGACT
* * * * *
15605680 GGGAATGAACACTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTTAGTCGGCCAGA
713 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
* * * * * ** *
15605745 AGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTTCGTGCTGTCGATCCTGCTGCCA
778 GGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCC-CTCTGCGTGCTACCGATCCTGCTGCCG
*
15605810 CAACCCTCAATCTCGTCTGAT
842 CAACCCTCAGTCTCGTCTGAT
** **
15605831 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAACGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
* *
15605896 CACTATGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAG
66 CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15605961 GCACATCTTTATATTTCTGCCATGGCAATGCCATTTTTTTGTCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
**
15606026 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * *
15606091 CTTTTT-ACGATCTG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTAAGGTTC-GAGATTTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
15606154 CATGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15606219 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
* * * *
15606284 GTGAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
15606349 ATATAAGGGCGAAGTGCCAGCACCCATCACACATCATGTGCGCACA--CCCCTCGGCCCCCCCGA
518 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGTCCCCCCGA
* * * * *
15606412 TCGTCGGAACCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCTAGGAAGAAAAATACGG
583 TCGCCGGAACCCAATACCGCCGGTCAGGTTCTCCGACGATAGTGTCCCGACGAAGAAAAATACGG
* * * *
15606477 CAGCAGCACATGCCCGAGCCCAGCATGTC-CTACCGCAACCCTCGGTCTTGTCCGATCTTAGATT
648 CACCAGCACATGCTCGAGCCCAGCAAG-CGCTACCGTAA--C-C---CTTG---G-TC-------
* *
15606541 GGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACG
695 -CG-AT---CT-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** *
15606606 AGAGCGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCACC
752 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCC-CC
* *
15606671 TCTGCGTGCTACCGATCCTGCTACCGCAACCTTCAGTC-CGGTCTGAT
816 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTC-GTCTGAT
* *
15606718 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
* * *
15606783 CACTATGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAG
66 CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15606848 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
15606913 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
** * * * *
15606978 CTTAATACGGTTCAAGATTTTTT-AAAATTCTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTAAGGTTCGAGATTTTTTAAAAATT-TTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
15607042 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15607107 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
* **
15607172 GTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCA
454 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
15607236 ATATAA-GGCCTAAGTACCAGCGCCCATCACACATCATGTGTGCACACCCCCCTTGG-CCCCCTC
518 ATATAAGGGCC-AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGTCCCCC-C
* * * ** * * * * * *
15607299 GTTCGTCGAAACCCCAATGTCGTCGGTTAGGTTCTCC-AGTGATGGTGTCTCGGCGAAGAAAAAT
581 GATCGCCGGAA-CCCAATACCGCCGGTCAGGTTCTCCGA-CGATAGTGTCCCGACGAAGAAAAAT
* * * * * * * * *
15607363 ACGACACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAAT-TCAATCTTA
644 ACGGCACCAGCACATGCTCGAGCCCAGCAAGCGCTACCGTAACCCTTGGTCCGATCTCGATCTTA
* *
15607427 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
709 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
15607482 GGCGGGCACT
Statistics
Matches: 2188, Mismatches: 248, Indels: 136
0.85 0.10 0.05
Matches are distributed among these distances:
842 45 0.02
845 6 0.00
846 477 0.22
847 3 0.00
849 4 0.00
850 1 0.00
851 1 0.00
852 4 0.00
853 8 0.00
855 3 0.00
856 5 0.00
857 18 0.01
858 14 0.01
859 3 0.00
861 83 0.04
862 29 0.01
863 200 0.09
864 505 0.23
865 4 0.00
866 1 0.00
867 5 0.00
870 1 0.00
871 4 0.00
879 1 0.00
880 3 0.00
883 2 0.00
884 3 0.00
885 1 0.00
886 6 0.00
887 430 0.20
888 225 0.10
889 18 0.01
890 75 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
CTTTTTAAGGTTCGAGATTTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGT
AAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGTCCCCCCGATCG
CCGGAACCCAATACCGCCGGTCAGGTTCTCCGACGATAGTGTCCCGACGAAGAAAAATACGGCAC
CAGCACATGCTCGAGCCCAGCAAGCGCTACCGTAACCCTTGGTCCGATCTCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
CCTCAGTCTCGTCTGAT
Found at i:15606562 original size:26 final size:26
Alignment explanation
Indices: 15606533--15606585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15606523 CTTGTCCGAT
*
15606533 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15606559 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15606585 C
1 C
15606586 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15608152 original size:26 final size:27
Alignment explanation
Indices: 15608111--15608163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
15608101 CCGGTCTGAT
*
15608111 TTAGACTTTGGAATGAACTCCGTATGC
1 TTAGACTTGGGAATGAACTCCGTATGC
*
15608138 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACTTGGGAATGAACTCCGTATGC
15608164 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (27 bp):
TTAGACTTGGGAATGAACTCCGTATGC
Found at i:15610559 original size:26 final size:26
Alignment explanation
Indices: 15610523--15610575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15610513 CTAGTCCGAT
15610523 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
15610549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15610575 C
1 C
15610576 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15611448 original size:26 final size:26
Alignment explanation
Indices: 15611412--15611464 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611402 TCTGGTCTGA
15611412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15611438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15611464 C
1 C
15611465 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15611475 original size:889 final size:882
Alignment explanation
Indices: 15609663--15611742 Score: 2913
Period size: 889 Copynumber: 2.3 Consensus size: 882
15609653 TCGGTCCGAT
** * *
15609663 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATGCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
15609728 CGGCCAGAAAGGTGGGATGTGCAAGCCGGAGATTGATCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAG-GAGGGGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGCGTGCT-TCGATCC
* * * * *
15609793 TGCTGCCGTAACCTTCGATCTGGTCTGATCTTAGACTGGAAATGAACTCCGT-TTGCCTAAGCCA
128 TGCTACCGCAACCCTCGTTC-GGTCCGATCTTAGACTGGAAATGAACTCCGTATT-CCTAAGCCA
* *
15609857 ACCGACAAAATGAGCGGGCGGGCGGGC-AGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGC
191 ACCGACAAAATGAGCGGGCGGGCGGGCGA-GCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGC
* * * * *
15609921 CATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTATGCCGTGCCAATGCCAT
255 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACCCTGCCAAGGCCAT
* *
15609986 TTTTTTGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
320 TTTTCTAGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
*
15610051 ACTCATTTTCTATATTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
385 ACTCATTTTCTATATTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
15610116 AGGAGTTTTGGCCCAAAACTTGCTAGACGTGATCCTCGTATCTTTGTTGGCATGCACAAAATAAT
450 AGGAGTTTTGGCCCAAAACTTGCTAGACATGATCCTCGTATCTTTGTTGGCATGCAAAAAAAAAA
*
15610181 TCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGGAC
515 TCAGCTAAAAACTCGAAGTGTACAACATTTTATGACCATTTGAAAAAAGTGTCCCCATTTAGGAC
15610246 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
580 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
* *
15610311 CGAGGTTTGATGGAGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCACACATCATG
645 CGAGGTTTGATGGAGGATAGGAGGACAATATAAGGGCCAAGTAACAGCACCCATCACACATCATG
* * * * *
15610376 TACGCACACCCCCCCGGCCCCCCCGATCCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
710 GACACACACCCCCCCAGCCCCCCCGATCCCAGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGA
*
15610441 TGGAGTCTCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
775 TGGAGTCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
15610506 CCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
840 CCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
*
15610549 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
15610614 C-GACAGGAGGGGCGCGATGCGCAAGCCGGGGATCGGTTGGATCCACCTCTGCGTGCTATCGATC
66 CGGCCAGGAGGGG-G-GATGCGCAAGCCGGGGATCGATCGGGTCC-CCTCTGCGTGCT-TCGATC
* *
15610678 CTGCTACCGCAACCCTCTGTTCGGTCCAATCTTAGACTAGG-AATGAACTCTGTATTCCTAAGCC
127 CTGCTACCGCAACCCTC-GTTCGGTCCGATCTTAGACT-GGAAATGAACTCCGTATTCCTAAGCC
* * *
15610742 AACTGACAAAATGAGCGGGAGGGCGGGCGAGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGC
190 AACCGACAAAATGAGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGC
*
15610807 CATGGATCGATAGGGTGAG-AGGTGGGTTTAGGCACATCTTCATATTTTTACCCTGCCAAGGCCA
255 CATGGATCGATAGGGTG-GTAGGTGGGTTTAGGCACATCTTCATATTTATACCCTGCCAAGGCCA
* *
15610871 TTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGAC
319 TTTTTCTAGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** * *
15610936 GACTCATTTTCTATTTTTCACAATTTTTGAATCTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
384 GACTCATTTTCTATATTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * *
15611001 TAGATGTATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAA
449 CAG--G-AGTTTTGGCCCAAAACTTGCTAGACATGATCCTCGTATCTTTGTTGGCATGCAAAAAA
* * *
15611066 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAGGTGTCCCTATTTC
511 AAAATCAGCTAAAAACTCGAAGTGTACAACATTTTATGACCATTTGAAAAAAGTGTCCCCATTT-
*
15611131 A-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
575 AGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
*
15611195 GTTCTCGAGGTTTGAT-GAGGGATAGGAGGACAATATAAGGGCCAAGTACCAGCACCCATCACAC
640 GTTCTCGAGGTTTGATGGA-GGATAGGAGGACAATATAAGGGCCAAGTAACAGCACCCATCACAC
* ** * *
15611259 ATCATGGGCACACACCCCCCCAGCTGCCCTGATGGCCAGAACCCAAATGCCGTCGGTCAGGTTCT
704 ATCATGGACACACACCCCCCCAGCCCCCCCGAT-CCCAGAACCCAAATGCCGTCGGTCAGGTTCT
* * * ***
15611324 CCGGCGATGGTGTCCCGGTGAAGAAAAATTCTG-CACCAGCACATTTTCGAGCCCAGCATGTGCT
768 CCGACGATGGAGTCCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
15611388 GCCGTAACCCTCGGTCTGGTCTGA-CTTAGACTGGGAATGAACTCCGTATG
832 ACCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
15611438 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
15611503 CGGCCA-GAGGGGTTGGATGCACAAGTCGGGGATCGACCGGGTCCCCATCTGCGTG-TTGCTGAT
66 CGGCCAGGAGGGG--GGATGCGCAAGCCGGGGATCGATCGGGTCCCC-TCTGCGTGCTT-C-GAT
* * * * *
15611566 CCTACTACAGCAACCCTCGATCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTATGCC
126 CCTGCTACCGCAACCCTCG-TTCGGTCCGATCTTAGACTGGAAATGAACTCCGTATTCCTAAGCC
** * * * * * * *
15611631 AACCGATGAAACGAGTGGGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGCTGTGCAAGC
190 AACCGACAAAATGAGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGC
* *
15611696 CGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTT
255 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
15611743 CATGATTTTT
Statistics
Matches: 1055, Mismatches: 116, Indels: 43
0.87 0.10 0.04
Matches are distributed among these distances:
884 4 0.00
885 7 0.01
886 381 0.36
887 10 0.01
888 11 0.01
889 534 0.51
890 107 0.10
891 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGGAGGGGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTTCGATCCTGC
TACCGCAACCCTCGTTCGGTCCGATCTTAGACTGGAAATGAACTCCGTATTCCTAAGCCAACCGA
CAAAATGAGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACCCTGCCAAGGCCATTTTTCT
AGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
TTTCTATATTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGGAGT
TTTGGCCCAAAACTTGCTAGACATGATCCTCGTATCTTTGTTGGCATGCAAAAAAAAAATCAGCT
AAAAACTCGAAGTGTACAACATTTTATGACCATTTGAAAAAAGTGTCCCCATTTAGGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGT
TTGATGGAGGATAGGAGGACAATATAAGGGCCAAGTAACAGCACCCATCACACATCATGGACACA
CACCCCCCCAGCCCCCCCGATCCCAGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGATGGAGT
CCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG
TCTAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
Found at i:15615679 original size:26 final size:26
Alignment explanation
Indices: 15615628--15615680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15615618 CTGGTCCGAT
*
15615628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15615654 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
15615680 C
1 C
15615681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15617413 original size:26 final size:26
Alignment explanation
Indices: 15617377--15617429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617367 CCAGTTTGAT
*
15617377 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15617403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15617429 C
1 C
15617430 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15618316 original size:26 final size:26
Alignment explanation
Indices: 15618266--15618316 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15618256 CCGGTCTGAT
* * *
15618266 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGAATGGGAATGAACGCAGTATA
15618292 CTTAGAATGGGAATGAACGCAGTAT
1 CTTAGAATGGGAATGAACGCAGTAT
15618317 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACGCAGTATA
Found at i:15618547 original size:889 final size:883
Alignment explanation
Indices: 15611740--15625296 Score: 16039
Period size: 863 Copynumber: 15.6 Consensus size: 883
15611730 CATCTTCATA
* *** * *
15611740 TTTCATGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTTAAATTTTTTCAGAAGAAGTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * * * *
15611805 TACCAAACGTGGTGGACGTGATCCTTGTATTTTTG-TAGCATGCGCAAAAAAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
15611869 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * ** * *
15611934 TACTGGCA-CAAAACTTGTAAAATTTCAAATGCTCTTTAAGGGCATGTGAGTTCTCGTGGTTTGA
196 TACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
*
15611998 TGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
*** * * * * * *
15612062 CTTGTCGGTCCCCCCGATCGTCGAAACCCCAATGCCGCGGGTTAGGTTCTCCGGTGATGGTGTCC
325 C-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
** ** * **
15612127 CGGTGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAA-CC-C-T-C
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
*
15612188 --AG-TC-----C---A-G---TCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
15612237 CCCACGAAAAGAGCGTTCGAGCACTCAGCCAGCCAGAGGGGCAGGATGTGCAAGCCGAGGATCGA
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * * * *
15612302 TCAGGACCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCTTCGATCCGGTCTGATCTTAGAC
584 TC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
15612367 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAAG
648 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTACG
* * *
15612432 TCGGCCAAAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATC
713 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
15612497 TTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
778 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15612562 CTTCATGTGAACTTTCATGGCAAGACGACTCATTTTCTATT
843 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** *
15612603 TCTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCA-AA-AACGTTTTG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-GTTTTG
** * * * *
15612666 GTACAAAACGTGGTAGACGCGATCGTTGTA------TT----T---CAAAAAAATTCAGCTAAAA
65 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15612718 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
15612783 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGAGTGTGTTCTTGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* * * *
15612848 TGAGGGATA-TGGACCAATATATA-GGCTAAGTTCCAGCACCCATCGCACATCATGTGCGCACAC
260 TGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
15612911 CGCCCTGGCCCCACCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTACTCCGGCGATGGTGTCC
324 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* * * * ** * *
15612976 CGGCAAAGAAAAATACGACACCAGAACATGCTTGAACCCAGCATGTGCTACCGCAA----C--CC
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
* *
15613035 -TCGATC-----C-GG-T---CT--G-ATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** * *
15613086 CCCATGAAATGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGTTGGATGCGAAAGTCGGGGATCGA
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * **
15613151 TCGGGTCCCCATCTGCGTGCTGCCGATCCCGCTACCGCAACCCTCGGTTC-AGTCCAATCTTAGA
584 TC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA-TCTGATCTTAGA
* * * *
15613215 TTTGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCAGGCGGGCGGGTGGGCACTAC
647 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTAC
*
15613280 GTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
712 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15613345 CTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
777 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15613410 CCTTCATGTGAACTTTCATGGCAAGACGACTCGTTTTTTATT
842 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
15613452 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGAGTTTTTAAAATTTTTTCAGAAGAAGTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * * * ** ** *
15613517 TACCAAACGTGGTGGACATGATCCTTGTATATTTTG-TACCATGCGTAAAATAATTCAGCTAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15613581 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
15613646 CTACTGGCAACAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
15613711 TGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
15613775 CCCCC-GCCCCCCCGATCACCGGAACCCTAATGTCGCCGGTCAGGTTCT-C--C----G-GT---
325 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCC
** * * *
15613828 ---GAAGAAAAATGTGGCACCAGTACATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCAATCT
390 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC-
* * * ** * *
15613890 GGTCCGATCTTAAATTGGGAATGAACTCCACATGCTTAGACTGGTAATGAACTCCATATGCCTAA
453 CGT-CGATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
15613955 GTCAAGCCACGAAACGAGCGTGCGGGCGCTCATCCGACCAAAGGGGCCGGATACGCAAGCCGGGG
514 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * *
15614020 ATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTATCGTAACCCTCGGTCTGATCTGATCT
579 ATCGATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCT
* * *
15614085 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGCGGGCGGGCGGGCGGGCA
643 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCA
* * * * *
15614150 CTAC-TCCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGCTTAGG
708 CTACGT-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
15614214 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGATCCC
772 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
*
15614279 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
837 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
15614326 TTTCACGATTTTTAAAACTTTTTGCGTTTCAGGATTTTTTAAAATTTTTTCAGAAGGACTTTCGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** ** * *
15614391 CTTCAAACTTGGTAGACGTTTTCCTTTTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * *
15614456 ACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTATCCCCATTTCAGACACTTTAGTTG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
15614521 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
*
15614586 TGAGGGATAGGGGGCCAATATATA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-
260 TGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * ** * *
15614649 CCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGCCGTTGGTTAGGTTCTCCGGTGATGGTGTCC
324 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
** * * * *
15614714 CGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAA-CC-C-T-C
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
15614775 G--G---TT---C--GAT---CT--G-ATCTTAGACTGGGAATGAACTCCGTATGCCTAA-TCAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
15614823 CCCACGAAATGAGCGTGTGGGCGCTCAATCGGCCAGAGGGGCTGGATGCGGAAGTCGGGGATCGA
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * *
15614888 TCGGGTCCCCATCTACGTGCTGCCGATCCTGCTATCGTAACCCTTGGTCC-AGTCTGATCTTAGA
584 TC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA-TCTGATCTTAGA
* * *
15614952 CTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAA--TG-A-GCGGGCGGGCGAGCACTAC
647 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTAC
* * * *
15615013 GTCGGCCAAAGAGGCGGGCTACGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACAT
712 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
15615078 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
777 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
15615143 CCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
842 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * ** * *
15615185 TTTCACAATTTTTAAAACTTTTTACGGTTTAGGATTGTTTAAAATTTTTTCAGAAGAAGTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * * * *
15615250 TACCAAA-GTGGTGGACGTGATCCTTGCATTTTTG-TAGCATGCACAAAAAAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
15615313 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
15615378 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTAAGGTTTAAT
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
15615443 GAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
261 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
15615507 CCCC-G-CCCCCCAATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCT-C--C----G-GT----
326 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCG
* * * * ** *
15615558 --GAAGAAAATTATGGCACCAGCATATGCCCTAGCCCAGCATGTGCTGTTGCAACCCTCGATCTG
391 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TC-C
* **
15615621 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCTATATGCCTAAG
454 GT-CGATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * *
15615686 TCAACCCAAAAAATGAGCGTGCGGGCAG-TCATCCGACCAGAGGGGCCGGATGCGCAAGCCGGGG
515 TCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * *
15615750 ATCGATCGGGT-CCCCTCTATC-TGCTGCCGATCCTGCTGCTGCAACCCTC-ATCTGATCTGATC
579 ATCGATC-GGTCCCCCTCT-GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATC
* * * * * *
15615812 TTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACAAGTAGGCGGGCGGGCGGGC
642 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGC
* * * * **
15615877 ACTAC-TCTGACTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGATTTTAG
707 ACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
15615941 GCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
771 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* *
15616006 CTTAGGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
836 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
15616054 TTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTGCAGAAGCACTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** *
15616119 CATCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAGTTCAGCTAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAA
* * * *
15616183 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCTATTTCAAACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* ** *
15616248 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAACGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
*
15616313 TGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * ** *
15616378 CCCCACGGCCGCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGGTGTCT
325 CCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* * *
15616443 CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCGAGCATGTGCTGTCGCAA-CC-C-T-C
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
* **
15616504 G--G----T---C----TG-A-TCCG-ATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGAAAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * * * *
15616553 CCCACGAAATGATAGTGCGAGCGCTCAACCGGCCAGAGTGGTC-GGATGCACAAGCCGGGGATCC
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
15616617 ATCGGGTCCCCCTCTGTGTACTGCCGATCTTGCTGCCGCAACCCTTGGTCTGATCCGATCTTAGA
583 ATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGA
* * * * *
15616682 CTGGCAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTAC
647 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTAC
* *
15616747 -TCCAGCCAGAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
712 GT-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
15616811 TCTTCATATTTTTGCCATGCCACTACCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
776 TCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
*
15616876 GCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
841 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
15616919 TTTCACGATTTTTGAAATTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAA--AGCTTTTT
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG-TTTTG
* * *
15616982 GCGCCCAAACTTGGTATACGTGATCCTTGTATTTTTGTAGGCATGCAAAAAAAAATTCAGCTAAA
65 GC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
15617047 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATT
129 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
15617112 GCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCCTGAGGTTTG
194 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* * * *
15617176 ATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGCGTGCACA-
259 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
15617240 CCCCCCGG-CCCCCC-ATCGCCGGAACCCCTATGCCTCCGGTCAGGTTCTCTGGCAATGGTGTCC
324 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* * * * * * * *
15617303 CGACGAA-AAAAAAAGAGGTACTAGCACATGCCCAAGCCCAGTATGTCCTGTCGCAACCCTCAGT
389 CGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT
* *
15617367 CCAGTTTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
452 CC-G-TCGATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
15617432 AAGTCAACCTATGAAACGAGCCTGCAGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGG
512 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * * *
15617497 GGATCGGTCGGGTCCCCCTCCGCGTGCTGCCAATCCTACTGCCACAACCCTTGGTCTGGT-TCAA
577 GGATCGATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCT-GA
* * * * * *
15617561 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGTGGGCCG
640 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGG
* *
15617626 GCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
705 GCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
15617691 GGCACATCTTCATATCTCTACCATGCCAGTGCCATTTTTCTAGCCTGTAAATTCATACAATGGTC
770 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
15617756 CCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGGCTCGTTTTCTATT
835 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * **
15617805 TTTCTCGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATCTTTTCAGAAGGAGTTTCAG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * *
15617869 CCCCAAACTTATTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
15617934 CTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
15617999 AACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
* * * * * *
15618064 GAGGGATAGGGGGCCAGTAGAAGGGCCAAGAACCGGCACCCATCGCACATCTTGTGCGCACACCT
261 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** * * * *
15618129 CCCGGGCCCCCCCGATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCAATGGTGTCCTG
326 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCG
* * * * *
15618194 GCGAAGAAAAATACGGTATCAGCACATGCCCAAGCCCAACATGTG-TAGCCGCAACCCTCAGTCC
391 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTC-GTCC
* * *
15618258 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGAATGGGAATGAACGCAGTATGCCTAA
454 -GTC-GATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * *
15618323 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGCAAGACGTGTAAGCCGGGG
514 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * * * * *
15618388 ATCGGTCGATTTCACCTCTGCATGCTGTCGATCATACTGTCGTAACCCTCGATCCGATTTGATCT
579 ATCGATCG-GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCT
* * * *
15618453 TAGACTGGGAATGAACTACGTATGTCTAAGCCAACCGATGAAACGAGTAGGCGGGCGGGTGGGCA
643 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCA
*
15618518 CTACGTCGGCCAGAGAGAG-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGG
708 CTACGTCGGCCAGAGAG-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
15618582 CACATCTTCATATTTTTG-AAGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
772 CACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * *
15618646 CTTAAGCATTCATGTGAACTTTCATGGCAAGATGACTCGTTTTCTATT
836 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** *
15618694 TTTCACGA-TTTTGAAAATTTTT-CAGGTTCAAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTG
1 TTTCACGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
** * *
15618757 GTACCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
65 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15618822 ACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
15618887 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGTGTTCTTGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* * * ** *
15618952 TGAGGGATATGGGGCCAATATATA-GGCCAAGTATCAGCACCTATCGCACATCACATACGCACAC
260 TGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * ** * * *
15619016 CCCCCCGCCCCCCCCGATCACCGGAGCCCCAATACCTTCGGTTAGGTTCTCCGGTGATGGCGTCC
324 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* * *
15619081 C-AGCGAA-AAAAAAATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C-T-
389 CGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTC
* *
15619140 CG--G-TC-----C-----G-A-TCC-AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
453 CGTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15619189 ACCCACGAAACAAGCGTGCAGG-GCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGTCGGGGATTG
518 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * ** * * **
15619253 ACCGGGACCCCATCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCATTCTGGTCCAATCTTAGA
583 ATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGA
** * * * *
15619318 CTGGGAATGAACTTTGTATGCCTAAGCCAACCGATTAAACGAGCGGGCAGGCGGGCGGGCATTAC
647 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTAC
* *
15619383 GTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGCACAT
712 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
15619448 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
777 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
15619513 CCTTCATGTGAAGTTTCATGGCTAGACGACTCGTTTTCTATT
842 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
15619555 TTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTCTAG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT-TTG
* * *
15619620 G-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTAGGCATGCAC-AAAAAATTCGGCTAAAA
65 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15619683 ACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
15619748 CTACTGGCAGCAAACATGTAAAATCCCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* * *
15619812 TGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCATATCATGCGCACACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * ** * *
15619876 CCCGCGGCCCCCTC-ATCGCCGGAACCCCTATGCCTTCGGTGAGGTTCTCTGGCGATGGTGTCCC
325 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCC
*** * * *
15619940 GACGAA-AAAAACTGTAGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTCACAA-CC-C-T-C
390 GACGAAGAAAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
*
15620000 G--G----T-G--T-G--G---TCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
15620049 CCCACGAAACGAGCGTGCAGGCACTCAGCCGGTTAGAGGGGCGGGATACGTAAGCTGGGGATCGA
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * *
15620114 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCTTCAG-CTTGGTCTAATCTTAGA
584 TC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-CGATCTGATCTTAGA
* * *
15620178 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGA--ATGGACAGGCGGGCAGGCACT
647 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCA-GG-CGGGCGGGCGGGCACT
* * *
15620241 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
710 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
15620306 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTA
775 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
*
15620371 AGCCTTCATGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATT
840 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** ** * * *
15620415 TTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAGAATTTTTTCAGAAGAATTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * *
15620480 CCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTGTTGGCATGCACAAAAAATTTCAACTAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15620545 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCA-AGCACTTTAATG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATG
*
15620609 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
194 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
15620674 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG--CA-CA----C-C-C-C
259 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * ** * *
15620729 CCGCCC--CTACCTCGATCATCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTGTCC
324 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
** *
15620792 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCATAATGTGCTGCCACAA----C--CC
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCC
*
15620851 -TC-A-C-T--AC--G--G---TCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
454 GTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15620902 CCCACGAGACGAGCGTGTGGGCGCTCTGCCGTCCAGAGGGG-GGGATGCGCAAGCTGGGGATCGA
519 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * *
15620966 CTAGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAAAC
584 -TCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * * ** * * *
15621031 TAGAAATGAACTCCGTATGCCTAAGCCAACCGATAAAATAAGCGGGTGGGCGGGCAGGCACTACG
648 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTACG
* * **
15621096 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATGGATAGGGTGGT-GGTGGGTTTAGGCATGTC
713 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
15621160 TTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
778 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15621225 CTTCATGCGAAGTTTCATGGCAAGACGACTCATTTTCTATT
843 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
15621266 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTAG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
15621331 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
15621396 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGAC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
15621461 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATT-TTCGAGGTTTGA
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GAGGTTTGA
* * * *
15621525 TGAGGGATAGGGGGCCAACATAACGGCCAAGTACCAGCACCCATTGCACACCATGTGCGCACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * * * * * *
15621590 CCCCTGGCACCCCCCAATCGTCAGAACCCTAATGTCGTCTGTCAGGTTCTCTGGCGATGGTGGCC
325 CCCCCGGC-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* ** * * *
15621655 CGACGAAGAAAAATGCGGCACCAGCACAT-CCC-CTCCAACAGCATGTGGTACTGCAA----C--
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC--CAGCATGTGCTGCCGCAACCCTCGT
* *
15621712 CC-TC-A-GTT----T--A-G---TCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
452 CCGTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
15621763 AACCCACGAGACGAGCGTGCGGGCGCTCTGCCGTCCAGAGGGG-GGGATGCGCAAGCTGGGGATC
517 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * *
15621827 GGCTAGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAA
582 -GATCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAG
* * ** * * *
15621892 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATAAGCGGGTGGGCGGGCAGGCACTA
646 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTA
* * * *
15621957 CGCCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATGGATAGGGTGGT-GGTGGGTTTAGGCACG
711 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
15622021 TCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAA
776 TCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
15622086 GCCTTCATGCGAAGTTTCATGGCAAGACGACTCATTTTCAATT
841 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
15622129 TTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTAG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
15622194 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15622259 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGAC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
15622324 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCGAGGTTTGA
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GAGGTTTGA
* * * *
15622388 TGAGGGATAGGGGGCCAACATAACGGCCAAGTACCAGCACCCATTGCACACCATGTGCGCACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * * * * * * *
15622453 CCCCTGGCACCCTCCAATCGTCAGAACCCTAATGTCGTCTGTCAGGTTCTCTGGCGATGGTGGCC
325 CCCCCGGC-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCC
* ** * *
15622518 CGACGAAGAAAAATGCGGCACCAGCACAT-CCC-CTCCAACAGCATGTGCTACTGC-A-----G-
389 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC--CAGCATGTGCTGCCGCAACCCTCGT
* * *
15622574 CC--C--TC--AG--T---T-TAGTCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
452 CCGTCGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
15622626 AACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGTGGGGCGGGATGCGTAAACTGGGGATA
517 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *
15622691 AATCGGGT--CCC-CT---T-CTG-CG----TGCTGTCGCAACCCTCGTTCCGGTCTGATCTTAG
582 GATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAG
* * * * ** *
15622744 ACAGGGAATGAAATCTGTATGCCTAAGCCAACAGACAAAACG-GCCAGGCGGGCGGGTGGGCACT
646 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-CAGGCGGGCGGGCGGGCACT
** * *
15622808 ACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCAC
710 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
15622873 ATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTA
775 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
15622938 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
840 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
15622982 TTTCATGATTTTTGAAACTTCTTACCGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * * *
15623047 CCCCAAACTTACTAGATGTTATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15623112 CTCGAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATTGC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
15623176 TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
* * * *
15623241 GACGAATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACA-CC
261 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
15623305 CCCCGGTCCCCCGGTCCCCCGATCACCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGACGAAGG
326 CCCCGG----CC---CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGG
* * *
15623370 TGTCTCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCAACCCT
384 TGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
15623435 CTATCCAGTTCGATCTTACACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTAT
449 C-GTCC-G-TCGATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTAT
* * *
15623500 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGACGGGCGGGATGCTCAAG
508 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * ** *
15623565 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCGTAACCCTTAGTCCGGTC
573 CCGGGGATCGATC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATC
** * ** * *
15623630 CAATCTTATG-TTGGGAATGAACTTTGTATGTCTAAGCCAACCGATGAAACGAGCCGGCGGGCGG
637 TGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGG
* * ** *
15623694 GCAGGCACTACGCCGGTTAG-GGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
701 GCGGGCACTACGTCGGCCAGAGAGG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
15623758 GTTTAGGCACATCTTCATAATTCTACCATGCCAATTCCATTTTTCTGGCTTGTAAATTCATACAA
765 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* *
15623823 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGGCTCGTTTTCTATT
830 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * **
15623877 TTTCAAGATTTTTGAAACATTTTACGATTTGGGATTGTTTAAAATTTTTTCAGAACAAGTTTTGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * * *
15623942 CGCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15624007 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTGATGGC
131 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
15624072 TACTGGTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
196 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
*
15624137 GAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
261 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
15624202 CCCCGACCCCCCCCGATCGCCGAAACCCAAATGTCGTCGATCAGGTTCTCCGGCGATGGTGTCCC
326 CCCCG-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCC
* *
15624267 GACGAAGAAAAATACGGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
390 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCC
* * *
15624332 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGA-TAGGGAATGATCTCCGTATGTCTA
454 -GTC-GATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACT-GGGAATGAACTCCGTATGCCTA
* * * ** *
15624396 AGTCAACGCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATATGCAAGCCGCG
513 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * *
15624461 GATCGACCGGGCCCCCATTTACATGCTACC-ATTCCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
578 GATCGATCGGTCCCCC-TCTGCGTGCTGCCGA-TCCTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * *
15624525 CTTAGACTGGGAATGAACTCCGTATACCTAAGCGAACTGATGAAAC--G-A-GCGGGCGGGCGGG
641 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGG
*
15624586 CACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCGT-GATCGATAGGGTGGTAGGTGGGTTTAG
706 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** ** * *
15624650 GCAGATCTTCATATTTCTGCTGTGCCAATGAAATTTTTTTGGCTTGTAAATTCATACAATAGTCC
771 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
15624715 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
836 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * * * *
15624763 TTTCACAATTTTCAAAACTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTAGG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * * *
15624828 CCCCAAACATGGTAGACGTCATCCCTGTATCTTTT-TTGGCATGCACGAAAAAATTCAGCTAAAA
66 CCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
15624892 ACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
130 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
15624957 CTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
195 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* * * *
15625022 TAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGGACACC
260 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
15625087 CCCCCGGCCACCCCCGATCGTCGGAACCCCAAT---GTC-GTC-GG-T-T------A-GGT-TCT
325 CCCCCGGCC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTC-
* * * * * *
15625137 CCGACGAAGAAAAATGCGGTATCAGCACCTGCTCGACCCCAGCATGTGCTGCCGCAACCCTCGAT
388 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-T
*
15625202 CCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
452 CCG-T-CGATCTTAGACT-GG-ATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCT
15625267 AAGTCAACCCACGAAACGAGCGTGCGGGCG
512 AAGTCAACCCACGAAACGAGCGTGCGGGCG
15625297 GGCGGGCACA
Statistics
Matches: 11119, Mismatches: 1243, Indels: 655
0.85 0.10 0.05
Matches are distributed among these distances:
840 44 0.00
841 2 0.00
842 1 0.00
844 1 0.00
846 3 0.00
847 3 0.00
848 43 0.00
849 556 0.05
850 376 0.03
851 217 0.02
852 455 0.04
853 421 0.04
854 48 0.00
855 51 0.00
856 170 0.02
857 91 0.01
858 78 0.01
859 406 0.04
860 522 0.05
861 452 0.04
862 340 0.03
863 1540 0.14
864 201 0.02
865 493 0.04
866 69 0.01
867 69 0.01
868 6 0.00
869 241 0.02
870 32 0.00
871 163 0.01
872 196 0.02
873 11 0.00
874 434 0.04
875 200 0.02
876 85 0.01
877 2 0.00
878 4 0.00
879 2 0.00
880 3 0.00
881 7 0.00
882 8 0.00
883 104 0.01
884 8 0.00
885 187 0.02
886 908 0.08
887 57 0.01
888 75 0.01
889 831 0.07
890 70 0.01
891 296 0.03
894 4 0.00
895 365 0.03
896 161 0.01
897 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGT
CGATCTTAGACTGGATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCACTACGTCG
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
Found at i:15623485 original size:26 final size:26
Alignment explanation
Indices: 15623449--15623501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15623439 CCAGTTCGAT
15623449 CTTACACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
* *
15623475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGCATG
15623501 C
1 C
15623502 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:15625248 original size:26 final size:26
Alignment explanation
Indices: 15625212--15625264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625202 CCGATCCGAT
*
15625212 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15625238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15625264 C
1 C
15625265 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15627728 original size:26 final size:26
Alignment explanation
Indices: 15627692--15627744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15627682 CCAGTCTAAT
15627692 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15627718 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15627744 C
1 C
15627745 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15628601 original size:26 final size:26
Alignment explanation
Indices: 15628572--15628624 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15628562 CCGGTCCGAT
15628572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15628598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15628624 C
1 C
15628625 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15629495 original size:26 final size:26
Alignment explanation
Indices: 15629459--15629511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15629449 CTGATCTGAT
15629459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15629485 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15629511 C
1 C
15629512 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15629826 original size:887 final size:887
Alignment explanation
Indices: 15625238--15630852 Score: 7454
Period size: 890 Copynumber: 6.4 Consensus size: 887
15625228 ACTTCGTATG
* * *
15625238 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
15625303 CACAACGTCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15625368 GCAAATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* **
15625433 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * ** *
15625498 CCTTTTACGATTCGGGATTTTTGAAAATTTTTTTAGAAGGACTTTTGGTACCAAACATGGTAGAC
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
15625563 GTGATCCTTGTA-TTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15625627 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACTTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15625692 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
** *
15625756 TATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCCC-ATCG
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * *
15625820 CCAGAACCCCAATGCCGCC-AGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGCGAC
586 CCGGAACCCTAATGCCGCCGA-TCAGGTTCTCCGGTGATGGTGTCCC-GCGAAGAAAAATGCGAC
* * *
15625884 ACCACCACATGCCCAAGCCTAGCCTGTGCTGCCGCAA-CC-C--T-TG---G-TC-----C----
649 ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGTCTGATCTTAGACTGGG
* *
15625931 -A-G--C-CCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGCGT
714 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
15625989 GTGCGGGCACTCAACTGGCTAGAGGGGCTGGATGCGCAAGTC-ATGGATCGGTCGGGTCCCCATC
779 GTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTC
* * * *
15626053 TGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGAT
843 TGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
** * *
15626098 CTTATTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15626163 CACTACGCCAGCCATAAAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
15626228 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTACCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * *
15626293 CTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
15626358 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAT
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15626423 GTGATCCTTGTATTTTTGTAGGCATGCATAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
15626488 TTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCGG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
15626553 TAAAATCTTAAATGCTCATTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGCGGTCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
*
15626618 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
** * * *
15626683 CCATAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCA
586 CCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCCG-CGAAGAAAAATGCGACA
* * * * * *
15626748 CCCGCACATGCCCGAGCCCAGCCTGTGCTACCGCAACCATCGGTTCTGTCTGATCTTAGATTGGG
650 CCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCTGTCTGATCTTAGACTGGG
** *
15626813 AATGAACTCCAAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGC
714 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
15626878 GTGTGGGCACTCAG-TCGGCTAGAGGGGCGAGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTC
779 GTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTC
* ** * * *
15626942 TGCATGCTGCTGATCCTGCTGCCGTAACCCTTAGTCCCGTCCGAT
843 TGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
*
15626987 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15627052 CACTACGCCGGCCAGAGAGACGGGATGCGCAACCCATGGATCGACAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
15627117 GTACATCCTCATATTTCTTCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15627182 CTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
15627247 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGA-TTTCGGGGCCCAAACTTGGTATA
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGA
* *
15627311 CGTGATCCTTGTATTTTT-TTAGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 CGTGATCCTTGTATTTTTGTT-GGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15627375 ATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** *
15627440 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGACAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
15627505 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCCGA
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGA
* * * * * *
15627570 TCGTCGGAACCCCAATGCCACCGATTAGGTTCTCCGGTGATGGTGTCCCGGTGAAGAAGAATGCG
583 TCGCCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCC-GCGAAGAAAAATGCG
* * * * *
15627635 ACAGCAGCACATGCCCAAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTAATCTTAGACT
647 ACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGTCTGATCTTAGACT
* **
15627700 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACG
711 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * **
15627765 AGCGTGCGGGCGCTCAG-TCGGCCAGAGGGGCGGGATGTGCAAGCCG-GAGATTGATCTGGTCTG
776 AGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGATCGGGTCCC
* * * * * * *
15627828 CCTCAGCATGCTGTCAATCCTGCTACCGCAACCTTCGGTCCGGTCTGAT
839 CCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * * * * *
15627877 CTTTGACTGGGAATGAACTTCGTATGCCTAAGCTAGCCGACGAAACGAGCAGACGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
15627942 CACTACGCCGG-CAGGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 CACTACGCCGGCCA-GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
15628006 GGTACATCTTCATATTTCTGCCGTGCCAATGACATTTTTTTGGCTTGTAAATTCATACAATCGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
15628071 CCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACTCGTTTACTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15628136 ACTTTTTACGGTTCGGGATTTTTTAAAATCTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15628201 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCGGCTAAAAACTCGAAGTTTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15628266 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15628331 GTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * *
15628396 ATATAAGGTCCATGTACCAGCACCCATCGCACATCATGTGCGCACA---------CACCCCGATC
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * *
15628452 GTCGGAACCCTAGTGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATGTGAC
585 GCCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCCG-CGAAGAAAAATGCGAC
* * *
15628517 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
649 ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGTCTGATCTTAGACTGG
15628582 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CTGAAACGA
713 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGA
* * * * * * * *
15628646 GCGTGCGGGCGTTCAGCCGTCCATAGGGGCGGGATGTGCAAGCTGGGGATC-AGCTGGGTCCCCC
777 GCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGGTCCCCC
* * * *
15628710 TCTGTGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCTGAT
841 TCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * * * *
15628757 CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAATCGATGAAACAAGCGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
** * *
15628822 CACTACGTTGGCCAGAGAGGCGGGATGCGTAAGCCGTGGTTCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
15628887 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
15628952 CTTAAGCCTT-ATTGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CTTAAGCCTTCA-TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15629016 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15629081 TGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * *
15629146 TTTTGTTACCATTTGAAAAAAATGTTCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15629211 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
*
15629276 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGG-CCCCCCGAT
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * * * *
15629340 CGTCGGAACCCTTATGTCG-C-ATCAGGTTCTCCGATGATGGTGTCCCAGTGAAGAAAAATGCGA
584 CGCCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCC-GCGAAGAAAAATGCGA
* *
15629403 CACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTG
648 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG-TCTGATCTTAGACTG
* *
15629468 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
712 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
15629533 GTGTGACGGG-GCTCAGCTGGCCAGAGAGACGGGATGCACAAGCCGAGGATCGACCGGGTCCCCC
777 GCGTG-CGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCC
* * * * * *
15629597 GC-GACGTGCTACCAATCCTGCTGCCACAAGCCTCGGTCCGGTCCAAT
841 TCTG-CGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* *
15629644 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACG-GACGGGCGGGTGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGGCGGGCGGGCGG
* * *
15629708 GCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGATTTA
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
15629773 GGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
15629838 CATTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
15629903 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGAAGTTTAGACCCTAAACTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
15629968 CATGATCCTTGTATTTTTGTTGGAATTCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** * * *
15630033 TTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTTTCTGTAAACA
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACC
* *
15630097 TGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATGGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * *
15630162 AATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGTGCACACCCCCCGGCCCCCCTCGA
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-CGA
* * * ** * * * **
15630227 TCACCGAAACCCTAATGCCGTCGATCAGGTTCTCCGACGATGGTCTCCCAACAAAGAAAAATATG
583 TCGCCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCC-GCGAAGAAAAATGCG
* * * * *
15630292 GCACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAATCCC-CGGTCCGGTCCGATCTTAGAT
647 ACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CCCTCGGT-CTGTCTGATCTTAGAC
* *
15630356 TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATG-CTAAGTCAACCCACGAAAC
710 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
15630420 GGAGCGTCGCGAGGGCGCTCAGCCGGCCATA-GGG-TGGATGCGTAAGTCGGGGAATCGAGTC-G
775 -GAGCGT-GC--GGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGA-TCGG
* * * * * * ** **
15630482 G-CCCCTGTCT-AGTGCTGCCGATCTTGTTGTCGCAA-CCTTGGTCCAAT-CGAT
834 GTCCCC-CTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * *
15630533 CTTAGACT--GAATGAACTCCGTATTCCT-ATCCAACCGATTTG-AACGA-C--GCGGGC-GGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA--CGAAACGAGCGGGCGGGCGGGCG
*
15630590 GGCACTAC-CTCGACCAAGAGAGTATGCGGGATGCGGCAAGCCGGGTGGATCGATAGTGGTGGTA
64 GGCACTACGC-CGGCC-AGAGAG---GCGGGATGC-GCAAGCC--GTGGATCGATAG-GGTGGTA
* **
15630654 GGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTTTCTTGTAAATTCA
120 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCA
* * * * *
15630719 TACAATAGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCGAGACAACTCGTTTTTTATTTTTCAC
185 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** ** * *
15630784 GATTTTCAAAAAGTTTTACGGTTCGGGATTTTTTGAAATTGTTTT-ACAAGGAGTTTTGGCCCCA
250 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCA
*
15630848 GACTT
314 AACTT
15630853 CGTGTGTACA
Statistics
Matches: 4201, Mismatches: 459, Indels: 159
0.87 0.10 0.03
Matches are distributed among these distances:
860 301 0.07
861 163 0.04
862 63 0.01
863 90 0.02
864 1 0.00
865 1 0.00
868 1 0.00
869 2 0.00
872 1 0.00
873 2 0.00
879 5 0.00
880 783 0.19
881 3 0.00
882 1 0.00
883 17 0.00
884 12 0.00
886 25 0.01
887 786 0.19
888 41 0.01
889 719 0.17
890 929 0.22
891 225 0.05
892 16 0.00
893 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
CCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGGTGTCCCGCGAAGAAAAATGCGACAC
CAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGC
GTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
Found at i:15630378 original size:26 final size:26
Alignment explanation
Indices: 15630349--15630402 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15630339 CCGGTCCGAT
* *
15630349 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
15630375 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
15630401 CT
1 CT
15630403 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:15631230 original size:26 final size:26
Alignment explanation
Indices: 15631180--15631232 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15631170 CTGGTTCGAT
**
15631180 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15631206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15631232 C
1 C
15631233 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15632377 original size:26 final size:26
Alignment explanation
Indices: 15632341--15632391 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15632331 GATCCGATCA
*
15632341 TAGACTGGGAATCAACTTCGTATGCT
1 TAGACTGGGAATCAACTCCGTATGCT
* *
15632367 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATCAACTCCGTATGC
15632392 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATCAACTCCGTATGCT
Found at i:15632704 original size:171 final size:171
Alignment explanation
Indices: 15632419--15632754 Score: 496
Period size: 171 Copynumber: 2.0 Consensus size: 171
15632409 ACTAGCGTGC
** ** *
15632419 GGGCGCTCAGTCCACCAGAGGGGCGAGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTGCAT
1 GGGCGCTCAGTCCACCAGAGGGGCGAGATGCGTAAGCCAGGGATCGACCGGGTCCCCCACTGCAT
* * * *
15632484 GCTATCGATCCTGCTACTGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
66 GCTATCGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
15632549 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGT
131 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGT
* * * *
15632590 GGGCGCTCAG-CCGGCCAGAGGGGTGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCACTGCG
1 GGGCGCTCAGTCC-ACCAGAGGGGCGAGATGCGTAAGCCAGGGATCGACCGGGTCCCCCACTGCA
* *
15632654 TGCT-GCTGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAGCTCCGT
65 TGCTATC-GATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGT
*
15632718 ATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
15632755 GCTGGCACTA
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
170 3 0.02
171 144 0.98
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.18
Consensus pattern (171 bp):
GGGCGCTCAGTCCACCAGAGGGGCGAGATGCGTAAGCCAGGGATCGACCGGGTCCCCCACTGCAT
GCTATCGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGT
Found at i:15633477 original size:26 final size:26
Alignment explanation
Indices: 15633399--15633470 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
15633389 CTGATCCAAT
15633399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15633425 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15633451 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
15633471 TATATGCCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15634350 original size:26 final size:26
Alignment explanation
Indices: 15634314--15634366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15634304 TCGATCCGAT
*
15634314 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
15634340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15634366 C
1 C
15634367 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15635236 original size:26 final size:26
Alignment explanation
Indices: 15635200--15635252 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15635190 CCGATCCAAT
15635200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15635226 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15635252 C
1 C
15635253 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15635739 original size:889 final size:889
Alignment explanation
Indices: 15632590--15638759 Score: 8083
Period size: 889 Copynumber: 6.9 Consensus size: 889
15632580 GCGGACGGGT
* * * * * * *
15632590 GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCACTGCGT
1 GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* * * *
15632655 GCTGCTGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAGCTCCGTAT
66 GCTGCCGATCCTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15632720 GCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCTGGCACTACGCCGACCAGAGAGGTGGGA
131 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGA
* **
15632785 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCTGTGC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
*
15632850 CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCAT
261 CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* ** * *
15632915 GGCAAGATGACTCG-TTTCTTATTTTTTTTTATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
326 GGCAAGACGACTCGTTTTC-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* * *
15632979 AAATTTTTTCAGAAGGAGTTTCGGCCCTAAACTTGGTAAATGTGATCCTTGTATTTTTGTTGGCA
390 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCA
* * *
15633044 TGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGATCATTTGGAAAAAGTGT
455 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
15633109 CCCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
520 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
15633174 GGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAATATAAGGGACAAGTACCAGTC-C
585 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAG-CAC
** * * *
15633237 CCATCGCACATCATGTGCGCACACCCGTCGGCTCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
648 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * * *
15633302 TAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCATATGCCCGAGCCCAGT
713 CAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
15633367 ATGTGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
778 ATGTGCTGCCGCAA-CC-C--TC-G-----ATC-----C-------G-A-TCCG-AT-CTTAGAC
**
15633432 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAAC
817 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
*
15633497 GAGCGTGT
882 GAGCGTGC
* * * ** * * * *
15633505 AGGCACTCAACCGGTTAGAGGGGCGGGATACGCAAGCCAGGGATCGATCGGGTTCCCCTCTACGT
1 GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
** * * * * * * * *
15633570 GCTATCGATCCAGCTGCCGCAACCCTCAGTACAGTCTGATCTTAGACTCGAAATGGACTACATCT
66 GCTGCCGATCCTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
15633635 GCATAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGA
131 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGA
* *
15633700 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
*
15633765 CAATGCCATTTTTCTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
261 CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* * * *
15633830 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGAATTTTTTAA
326 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * *
15633895 AATTTTTTCAGAAGGAGTTTT-ACCCCAAAATGTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
391 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACT-TGGTAAACGTGATCCTTGTATTTTTGTTGGCA
* * *
15633959 TGCACAAAAAAATTCAGCTAAAAATTCGAATTGTACAAAATTTTGTGACCATTTGAAAAAAGTGT
455 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
15634024 CCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
520 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
15634089 GGGTCG-GAGTTCTCGAGGTTTGATGAGAGAT-AGGTTGCCAATATACGGGCCAAGTAACAGCAC
585 GGGT-GTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAGCAC
*
15634152 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
648 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * *
15634217 CAGGTGCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGT
713 CAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
15634282 ATGTGCTGCCACAACCCTCGCTTCGATCCGATCTTAAACTGGGAATGAACTCTGTATGCTTAGAC
778 ATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
15634347 TGGGAATGAACTCCGTATGCCTAAGTCCACCGACGAAACGAGCGTGC
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
** * * * * *
15634394 AGGGCGCTCGGCGGGTCGGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTG
1 -GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
* ** * * *
15634459 TGCTGCCGATCCTACTGGTGTAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTTCGT
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTTC-AGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
15634523 ATGCCTAAGCCAACCGATGAAACTAGCGGGCGGGC--G--GGCACTACGCCGTCCAGAAAGGCGG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGG
*
15634584 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* *
15634649 GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTTCCTTAAGTCTTCATGTGAAGTTTC
259 GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* * * *
15634714 ATGGCAAGAAGACTCGTTTTTTATTTTTTAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
324 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
15634779 AAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTT-TATGG
389 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGT-TGG
15634843 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
453 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
15634908 GTCCCCATTTCAAACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
518 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
15634972 GGGGGTGTGAGTTCTCGAGGTTTGATTAGTGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAG
583 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
15635037 CCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCCAGAACCCCAATACCGCCGA
648 CCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
* ** * * *
15635102 TCAGGTTCTCCGACGATCGTGTTTCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAG
712 TCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
15635167 CATGTGCTGTCGCAACTCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
777 CATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
15635232 CTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGC
842 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** * *
15635280 GGGCGCTCAACTGGCCAGACGGGCGGGATGTACAAGCTGGGGATCGATCGGGTCCCTCTCTGCGT
1 GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
** * ** *
15635345 GCTGTAGATCCTGCTGCCACAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
66 GCTGCCGATCCTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
15635410 GCCTAAACCAACCGATGAAACGAGCGGACGGACGGGCGGGCACCT-CGCCGGCCAGAGAGGTGCG
131 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCA-CTACGCCGGCCAGAGAGGCGGG
* * **
15635474 ATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGAAATG
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * *
15635539 CCAATCCCATTTTTCTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCA
260 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * ** *
15635604 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTT
325 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
*
15635669 AAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGTG-
390 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTG-GC
*
15635733 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
454 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
15635798 TCCCCGTTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAG
519 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
15635863 GGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
584 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
15635928 CATCGCACATCATGTGCGCACACCCCCCCGACCCCCCTCGATCACCGAAACCCTAATGCCGTCGG
649 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC-CGATCGCCGGAACCCCAATGCCGCCGG
* * * * *
15635993 TCAGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATGGGGCACCAGCACATACCCGAGGCCAG
712 TCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
15636058 CATGTGCTGCCGTAACCATCGATCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGA
777 CATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
15636123 CTGGGAATTAACTCCGTATGTCTAAGTCAACCCGCGAAACGAGCGTGC
842 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * ** * * * *
15636171 GGGCGCTC-AGTCGACCAAAGAGGTAGGATGCGGAAGCCGGGGATCGGTCGGGTCCCCCGCTACG
1 GGGCGCTCAACT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
* * * * * * * * *
15636235 TGCTACCGATCCTGCTACTGCAACCCTC-GATCTGGTCTAATCTTAAATTAGGAATGAACTCCGT
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTTC-AGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * * * *
15636299 ATGCCTAAGCCATCCGGCGAATCGAACAGGCGGGCGAGCAGGCACTATGCCGGCCAGAGAGGCGG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGG
**
15636364 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGT
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* * *
15636429 GCCAATGACATTTTTCTAGCTTGTAAATTCATACAATGG-CCCTTTAAGCCTTCATGAGAAGTTT
259 GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAAGTTT
*
15636493 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTC-GGATTTT
323 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTT
* * * *
15636557 TTAAAATTTTTTCAGAAGGATTTTTGGCCCTAAACTTGGTAAAGGTGATCCTTGTATTTTTTTTT
387 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTA--TTTTTGT
* * *
15636622 TGGCATGCACAAAAAGATTCAACTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAA
450 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* **
15636687 AGTGTCCCTATTTCAGACACTTTAATGGCTACTACCAGCAAACCTGTAAAATCTCAAATGCTCTT
515 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
15636752 TAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAAAATAAGGGCCAAGTACCT
580 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCA
* * * * *
15636816 GCACCCATCGCACATCATGTGCGTACACCCCCCCTGG-CCCCCCAATCGTCGGAACCACATTGCC
644 GCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCC
** * * * *
15636880 GCTAGTCAGGTTCTCCGATGATGGTGTCTCGATGAAGAAAAATGCGACACCAGCACATGCCCAAG
707 GCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
15636945 CCCTGCATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
772 CCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
15637010 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGTGCGTGC
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * ** * * *
15637063 GGGCGTTCAGCTGGCCAGAGGGGCGGGATAAGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGT
1 GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* * *
15637128 GCTACCGATCCTACT---G----CCT--G-TC---C-GATCTTAGACTGGGAATAAACTCCGTAT
66 GCTGCCGATCCTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ** * * *
15637179 GACTAAGCCAACAGATGAAATGAGCGGGCGGACGGGTGGGCACTACGTCGGCCAGAAAGGCAGGA
131 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGA
* * *
15637244 TGCGCAAGACGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCCATGC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
* *
15637309 CAATGCCACTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAC
261 CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* **
15637374 GGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA-TTTTTACCCTTCGGGATTTTTTAA
326 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
15637438 AATTTTTTCAGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAA
391 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCAT
*
15637503 GCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
456 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
15637568 CCCATTTCAGACACTTTAATGGCTACTGGCAACAAAACCTGTAAAATCTCAAATGCT-TTGTAAA
521 CCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTT-TAAG
* *
15637632 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
584 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
15637697 TA-CGGAACATCATGTGCGCACACCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGT
649 CATC-GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * *
15637761 CAGGTTCTCCGACGATGGTGTCGCGGTGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGC
713 CAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
15637826 ATGTACTGCTGGAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
778 ATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
15637891 GGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCATGT
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * ** * * *
15637938 GGGTGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCACCTTCTGCGT
1 GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* * * * * * * ** *
15638003 ACTGCCAATCCTGCTACCGTAATCCTC-GATCCAGTTTGATCTTAGACTAAGAATGAACTCTGTA
66 GCTGCCGATCCTGCTGCCGCAACCCTCAG-TTCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
15638067 TACCTAAGCCAACCGACGAAA-GAAGCGGGCGGTCGGGCAGGCACTATGTCGGCCAGAGAGACGG
130 TGCCTAAGCCAACCGACGAAACG-AGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGG
* *
15638131 GATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCCAT
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* * * * *
15638196 GCCAATGCCATTTTTTTGGCTTTTAAATTCATAGAATGGTCCATTAAGCCTCCATGTGAAGTTTC
259 GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* * * *
15638261 ATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTG
324 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
*
15638326 AAAATTTTTTCAGCAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGC
389 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGC
15638391 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
454 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
15638456 TCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
519 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
15638521 GGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACC
584 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
15638586 CATCGCACATCTTGTGCGCACACCCCCCGGCCCCCCCGATCCCCGGAACCCCAATGCCGTCGGTC
649 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * *
15638651 AGGTTCT-C--CGA--------C---GAAGAAAAATGTGGTACCAGCACATGCCCGAGCCTAGCT
714 AGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
15638702 TGTGCTACCGTAACCCTTGATCCGATCTGATCTTAGACTGGGAATGGACACCGTATGC
779 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
15638760 CTAAGCCATC
Statistics
Matches: 4630, Mismatches: 568, Indels: 154
0.87 0.11 0.03
Matches are distributed among these distances:
874 2 0.00
875 438 0.09
876 103 0.02
877 67 0.01
878 227 0.05
879 4 0.00
882 3 0.00
883 3 0.00
884 2 0.00
885 248 0.05
886 545 0.12
887 9 0.00
888 3 0.00
889 802 0.17
890 455 0.10
891 539 0.12
892 240 0.05
893 220 0.05
894 1 0.00
900 1 0.00
905 1 0.00
910 1 0.00
911 2 0.00
913 1 0.00
914 10 0.00
915 698 0.15
916 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
GCTGCCGATCCTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
CAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
GTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
Found at i:15636128 original size:26 final size:26
Alignment explanation
Indices: 15636092--15636142 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15636082 TGGTCTGATT
15636092 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
15636118 TTAGACTGGGAATTAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15636143 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15637887 original size:26 final size:26
Alignment explanation
Indices: 15637858--15637910 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637848 CCGGTCTGAT
* *
15637858 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
15637884 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
15637910 C
1 C
15637911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:15641187 original size:26 final size:26
Alignment explanation
Indices: 15641149--15641209 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
15641139 CCCTCGGCCC
15641149 ACTCCG-AT-CTTAGACTGGGAATGA
1 ACTCCGTATGCTTAGACTGGGAATGA
*
15641173 ACTCCTTATGCTTAGACTGGGAATGA
1 ACTCCGTATGCTTAGACTGGGAATGA
15641199 ACTCCGTATGC
1 ACTCCGTATGC
15641210 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTCCGTATGCTTAGACTGGGAATGA
Found at i:15642075 original size:26 final size:26
Alignment explanation
Indices: 15642039--15642091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642029 CCGATCCAAT
*
15642039 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15642065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15642091 C
1 C
15642092 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15642826 original size:890 final size:889
Alignment explanation
Indices: 15639406--15642955 Score: 5006
Period size: 890 Copynumber: 4.0 Consensus size: 889
15639396 CCGATCTGAT
* * * * *
15639406 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * *
15639471 CGGCCAGAGGGGCGGGTTGCACAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTACTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
15639536 TACTGCCGCAACACTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15639601 CTGACGAAACGAGCGGGCGGGT----GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15639662 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTCTGCCATGCCAATGCCAT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--TTTCTACCATGCCAATGCCAT
* * *
15639727 TTTTCTGGCTTGTAAATTGATACAATGGTCCCTTAAGGCTTCATGTGAAGTTTCATGGCAAGATG
324 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* *
15639792 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTC
* * *
15639857 AGAAGGAATTTTGGTCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAA
454 AGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAA
* * *
15639922 TATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
* * * *
15639987 GACACTTTAATGGCTACTAGCAGCAATCCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
*
15640052 TCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *
15640117 ATGTGCGCACACCCTCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
714 ATGTGCGCACACCC-CCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * *
15640182 GGTGATGGTGTCCCGATGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCACCATGTGCTGTC
778 GGCGATGGTGT-CCGATAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
15640247 GCAACCGTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATA
842 GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15640295 CTTAGATTGGGAATGAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * *** * * * **
15640360 CGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGACCGGGTCCCCCTTTGTGCGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* *
15640425 TGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** ** * *
15640490 CTGACGAAACGAGCGGGCGAGCAAGCATGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15640555 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACCATGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
*
15640620 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * *
15640685 TTGTTTTCTATTTTTGAGGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTCAAATTTTTTCAG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCAG
* * *
15640750 AAGGAGTTTTGG-CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCATAAAAAA
456 AAGGAGTTTTGGTCCC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAA
* *
15640814 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTA-ATTTCA
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CACATTTCA
*
15640878 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG-
584 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
* * * * *
15640942 TCTCGAGGTTTAATCAGGGATAGGGTGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * ** * *
15641007 ATGTGTGCA-AACCCCCTGGCCCCCCCGATCGTTGGAACCCCAATACCGTCGGTCAGGTTCTCCG
714 ATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * *
15641071 ACGATGGTGTCCCGGTGAAA-AAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATCTGCTGTC
779 GCGATGGTGT-CCGAT-AAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
15641135 GTAACCCTCGG-CCCACTCCGATCTTAGACTGGGAATGAACTCCTTATG
842 GCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15641183 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * ** * *
15641248 CCGTCAGAGGGGCGGGATGCGCAAGTCAGGGATCTG-TTGGGTCCCCCTCTGCATGTTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATC-GACCGGGTCCCCCTCTGCGTGCTACCGATC
** * * *
15641312 CTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15641377 ACCGACGAAATGA----AC----GGGCGAGCACTACGTCGACCAGAGAGGCGAGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
15641434 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
* * *
15641499 TTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGG
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * **
15641564 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCA
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCA
* * *
15641629 GAAGGTGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAA
455 GAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAA
* *
15641694 TTTCAGCTAAAAACGT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 ATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
* * *
15641758 GACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCA-
584 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTG-AG
* * *
15641822 TTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * * *
15641887 CATGCGTGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCG-CTAGTCAGGTTCTC
713 CATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * *
15641951 CAGCGATAGTGTCCAGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
777 CGGCGATGGTGTCC-GATAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
15642016 CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATG
841 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15642065 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * *
15642130 CGGCCAGAGGGCCGGGATGCGCAAGCCAAGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
15642195 TGCTACCACAACCCTCGGTCCAGTCAGATCTTAGACTGGGAATGAACACTGTATGCCTAAGCTAA
131 TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
15642260 CCGACGAAACGAGTGGGCGGGTGGGCGGGCACTACG-CAGGCCAGAGAGGCAGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCC
* * *
15642324 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATACCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
* *
15642389 TTTTTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
15642454 CTCGTTTTCTATTTTTCACGATTTTTGGAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCA
*** * * * *
15642519 GAAGGAGTTTTCAACCCAAACTT-GTAGACATGATCTTTGTATTTTTGTTGGTACGCACAAAAAA
455 GAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAA
15642583 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAG
* * *
15642648 ACATTTTTATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
*
15642713 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * * * *
15642778 TGTGCGCACACCCCACTAGCTCCTCCCGATCGTCGGAATCCTAATGCCGTCGGTCAGGTTCTCCG
715 TGTGCGCACACCCCCCCAGC-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
15642843 GCGATGGTGTCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCG
779 GCGATGGTGTC-CGATAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
** *
15642908 CAACCCTCGGTCTAATCCGATCTTAGACTAGGAATGAACTCCGTATG
843 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
15642955 C
1 C
15642956 CTAAGTTAAC
Statistics
Matches: 2361, Mismatches: 266, Indels: 67
0.88 0.10 0.02
Matches are distributed among these distances:
880 387 0.16
881 79 0.03
882 314 0.13
883 3 0.00
884 1 0.00
886 1 0.00
887 3 0.00
888 313 0.13
889 423 0.18
890 445 0.19
891 316 0.13
893 76 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
GATGGTGTCCGATAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15643563 original size:26 final size:26
Alignment explanation
Indices: 15643527--15643579 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643517 CTGGTCTGAT
15643527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15643553 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15643579 C
1 C
15643580 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15644454 original size:26 final size:26
Alignment explanation
Indices: 15644418--15644473 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15644408 CCGGTCCGAT
* *
15644418 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15644444 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15644470 CTTA
1 CTTA
15644474 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15646206 original size:26 final size:26
Alignment explanation
Indices: 15646177--15646229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15646167 CCAGTCCGAT
**
15646177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15646203 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15646229 C
1 C
15646230 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:15647392 original size:167 final size:167
Alignment explanation
Indices: 15647182--15647497 Score: 436
Period size: 167 Copynumber: 1.9 Consensus size: 167
15647172 TCCCCTTCTA
* *
15647182 CGTGCTGTCGATCCTGCTACCATAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCG
1 CGTGCTGTCGATCCTACTACCATAACCCTCGATCTAGTCTGATCTTAGAATGGGAATGAACTCCG
* * * * * * *
15647247 TATGCCTAAGCCAAACGTCGAATCGAACGGGCAGG-CGGACGGGCACTACGTCGGCCAGAGAGGC
66 TACGCCTAAGCCAAACGACGAATCGAACGGGCAGGTAGG-CGGGCACGAAGCCGACCAGAGAGGC
*
15647311 GTGATGCGCAAGCCGTGGATTGGTTGGATCCCTCTATG
130 GGGATGCGCAAGCCGTGGATTGGTTGGATCCCTCTATG
* * * * *
15647349 CGTGCTGTTGATCCTACTATCGTAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCCG
1 CGTGCTGTCGATCCTACTACCATAACCCTCGATCTAGTCTGATCTTAGAATGGGAATGAACTCCG
* ** * *
15647414 TACGCCTAAGCCAATCGACGAATCGAGTGGGCGGGTAGGCGGGCACGAAGCCGACTAGAGAGGCG
66 TACGCCTAAGCCAAACGACGAATCGAACGGGCAGGTAGGCGGGCACGAAGCCGACCAGAGAGGCG
15647479 GGATGCGCAAGCCGTGGAT
131 GGATGCGCAAGCCGTGGAT
15647498 CGATAGGGTG
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
167 126 0.98
168 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.21
Consensus pattern (167 bp):
CGTGCTGTCGATCCTACTACCATAACCCTCGATCTAGTCTGATCTTAGAATGGGAATGAACTCCG
TACGCCTAAGCCAAACGACGAATCGAACGGGCAGGTAGGCGGGCACGAAGCCGACCAGAGAGGCG
GGATGCGCAAGCCGTGGATTGGTTGGATCCCTCTATG
Found at i:15648133 original size:26 final size:26
Alignment explanation
Indices: 15648093--15648145 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15648083 CCAGTCTGAT
*
15648093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
15648119 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
15648145 C
1 C
15648146 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:15649009 original size:26 final size:26
Alignment explanation
Indices: 15648980--15649032 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15648970 TCGGTCCGAT
* *
15648980 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
15649006 CTTAGATTGGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
15649032 C
1 C
15649033 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:15649135 original size:886 final size:880
Alignment explanation
Indices: 15647298--15649791 Score: 3536
Period size: 886 Copynumber: 2.8 Consensus size: 880
15647288 GGCACTACGT
* * * * * * *
15647298 CGGCCAGAGAGGCGTGATGCGCAAGCCGTGGATTGGTTGGATCCCTCTATGCGTGCTGTTGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATTGGTCGGGTCCC-CTCTGCGTGCTGTCGATCC
* * *
15647363 TACTAT-CGTAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTACGCCTAAGCCA
64 TGC-ATCCGTAACCCTC-GTCT-ATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
15647427 ATCGACGAATCGAGTGGGCGGGTAGGCGGGCACGAAGCCGACTAGAGAGGCGGGATGCGCAAGCC
126 ACCGAC-AAACGAGTGGGCAGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
15647492 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTTATATTTCTGCCGTGCCAATGCCATT
190 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * * * * *
15647557 TTTCTAGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCTTGTCAAGTTTCATGGCACGACGA
255 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
15647622 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTC-AGGATTTTTTTAAATTTTTTC
320 CTCGTTTTCTATTTTTCATGA-TTTTCAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC
* * *
15647686 AGAAGGTG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAA
383 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
15647750 CATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTCA
448 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
15647814 GACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
513 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
15647879 TCTCGAGATTCGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGGACCCATCGCACATC
578 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
15647944 ATGTGCGCACCCCCCCCGGCCCTCCGATCGCCGGAACCCCAATACCACCGTTCAGGTTCTCCGAC
643 ATGTGCGCA-CCCCCCCTGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGC
* * ** *
15648009 GATGGTGTCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTA
707 GATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCACATGC-GCTGCA
* * *
15648074 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
771 ACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAACGAACTC
* ** * *
15648139 CGTATGCCTAAGTCAACCCACGAAACGGGCGTACGGGCGCTCAGT
836 CGTATGCCTAAGTCAACCCACAAAACGAACATACGGGCGCTCAGC
* ** *
15648184 CGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCAGTCGGGTCCGCCTCTGCGTGCTGCCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATTGGTCGGGTCC-CCTCTGCGTGCTGTCGATCC
* * * * * *
15648249 TGCATCCGCAACCCTCAGTCCTATTTGATCTTAGATTGGGTATGAACTTCGTTTGCCTAAGCCAA
64 TGCATCCGTAACCCTC-GT-CTATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15648314 CCGACATAACTAGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCG
127 CCGACA-AACGAGTGGGCAGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15648379 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCCATGCCAATGCCATTT
191 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
15648444 TTTTGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
256 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
15648509 TCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
321 TCGTTTTCTATTTTTCATGATTTTC-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
* * *
15648574 AAGGAGTTTTGGCCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCATAAAACC
385 AAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAC
*
15648639 TTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCA
449 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCA
15648704 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-
513 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
15648768 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
578 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
15648833 ATGTGCGCAAACCCCCCTGCCCCCCCGATCGCCGGAACCCGAATGCCACCGGTCAGGTTCTCCGG
643 ATGTGCGC-ACCCCCCCTG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGG
*
15648898 CGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCACATGC-C-GCA
706 CGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCACATGCGCTGCA
* * * * *
15648961 ACCCAT-GGTTCGGTCCGATCTTAGACTAGGAATGAATTCCGTATGCTTAGATTGGGAACGAACT
771 ACCC-TCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAACGAACT
**
15649025 CCGTATGCCTAAGTCAACCCACAAAACGAACATGTGGGCGCTCAGC
835 CCGTATGCCTAAGTCAACCCACAAAACGAACATACGGGCGCTCAGC
*
15649071 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCTCTGTGTGCTGTCGATCCT
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATTGGTCGGGTCCCCTCTGCGTGCTGTCGATCCT
* * *
15649136 G-TTGCCGTAACCCTCGATGC-AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
65 GCAT-CCGTAACCCTCG-T-CTA-TCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15649199 ACCGATGAAACGAGTGGGCAGATGGGCGAGCACTAC-TCTAGCCAGAGAGGCGGGATGCGCAAAC
126 ACCGA-CAAACGAGTGGGCAGGTGGGCGGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGC
* * * *
15649263 CGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACCTCTTCTTATTTCTGTCATGCCAATGCCAT
189 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
15649328 TTTCTTGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
254 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
15649393 ACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTTC
319 ACTCGTTTTCTATTTTTCATGA-TTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
15649458 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
383 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
15649523 AATTCAGCTAAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
448 CATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15649588 AGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
512 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
15649653 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
577 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
15649718 CATGTGCACTCCCCCCCAT-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
642 CATGTGCGCACCCCCCC-TGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGG
*
15649782 TGATGGTGTC
706 CGATGGTGTC
15649792 TCGGTCTGGT
Statistics
Matches: 1438, Mismatches: 146, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
884 50 0.03
885 147 0.10
886 749 0.52
887 149 0.10
888 91 0.06
889 91 0.06
890 161 0.11
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (880 bp):
CGGCCAGAGGGGCGGGATGCGCAAGCGGGGATTGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTG
CATCCGTAACCCTCGTCTATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CAAACGAGTGGGCAGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACCCCCCCTGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTGTC
CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCACATGCGCTGCAACCCTCGGTC
CAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAACGAACTCCGTATGCCTA
AGTCAACCCACAAAACGAACATACGGGCGCTCAGC
Found at i:15652071 original size:704 final size:701
Alignment explanation
Indices: 15650669--15652154 Score: 2208
Period size: 704 Copynumber: 2.1 Consensus size: 701
15650659 CTGTCGATCC
* * * *
15650669 TGCTGCTGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGAATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15650734 CCGATGAAACGAGGGGGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGTAGGCGGGCGGGCACTAT-CCGGCCAGAGAGACGAGACGCGCAAGCCG
*
15650799 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTACCGTGCCAATGCCATTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTT
* *
15650864 TCTGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
195 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACT
* ** *
15650929 CGTTTTCTATTTATCATGATTTTCGAAATTTTTTAAGGTTCGAGATTTTTTAAAATTTTTACATA
260 CGTTTTCTATTTATCAGGATTTTCGAAACCTTTTAAGGTTCGAGATTTTTTAAAATTTTTACAGA
* * *
15650994 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCAAAAAAAATT
325 AGGAGTTTTGGCCCCAAACTTGGTACACATGATCATTGTATTTTTGTTGGCAGGCAAAAAAAACT
* *
15651059 CAACTAAAAACTCGAAGCGTGCAAGATTTTCTGACCATTTGAAAAAAGTATCCCCATTTCAGACA
390 CAACTAAAAACTCGAAGCGTACAAGATTTTCTGACCATTTGAAAAAAATATCCCCATTTCAGACA
* *
15651124 CTTTAATGGCTACTAGAAGCAAACCTGTAAATCTCAAATGCTCTCTAAGTGAGTGTGAGTTCTCG
455 CTTTAATGGCTACTAGAAGCAAACCTGTAAATCTCAAATGCTCTCTAAGGGAGTATGAGTTCTCG
15651189 AGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** *
15651254 TGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAAAATTGCCAGTCAGGTTCTCCGACGAT
585 CGCACACCCCCTCGGCCCCCCCAATCACCGGAACCCCAAAATCGCCAGTCAGGTTCTCCGACGAT
*** * *
15651319 AGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
650 AGTGTCCCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* * *
15651371 TGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15651436 CCGACAAAACGAGCGGGTAGGCGGGCATGTGCTAC-AT-CGGCCAGAGAGGCGGGACGCGCAAGT
66 CCGACGAAACGAGCGGGTAGGCGGGC--GGGC-ACTATCCGGCCAGAGAGACGAGACGCGCAAGC
*
15651499 CGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACCGTGCCAATGCCAT
128 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCA-
15651564 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATG
192 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATG
* * * * * *
15651629 ACTCGTTTTCTATTTTTCAGGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTGAAATTTTTTC
257 ACTCGTTTTCTATTTATCAGGATTTTCGAAACCTTTTAAGGTTCGAGATTTTTTAAAATTTTTAC
* *
15651694 AGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGCAGGCATAAAAA
322 AGAAGGAGTTTTGGCCCCAAACTTGGTACACATGATCATTGTATTTTTGTTGGCAGGCA-AAAAA
* * * *
15651759 AACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
386 AACTCAACTAAAAACTCGAAGCGTACAAGATTTTCTGACCATTTGAAAAAAATATCCCCATTTCA
* * *
15651824 GACACTTTAATGGCTACTGGCAA-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAG
451 GACACTTTAATGGCTACTAG-AAGCAAACCTGT-AAATCTCAAATGCTCTCTAAGGGAGTATGAG
*
15651888 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
514 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
15651953 CATGTGCGCACACCCCC-CGGCCCCCCCAATCACCGGAACCCTAATGTCGTC-GATCAGGTTCTT
579 CATGTGCGCACACCCCCTCGGCCCCCCCAATCACCGGAACCCCAAAATCGCCAG-TCAGGTTCTC
* * **
15652016 CGATGATGGTGTCCCGACAAAGAAAAATACGGCACCAACACATGCTTGAGCCCAGCATG
643 CGACGATAGTGTCCCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* * * * *
15652075 TGCTGCTCCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCTA
1 TGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15652140 CCCACGAAACGAGCG
66 CCGACGAAACGAGCG
15652155 TGCGGGCGCT
Statistics
Matches: 700, Mismatches: 76, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
702 164 0.23
703 174 0.25
704 251 0.36
705 111 0.16
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (701 bp):
TGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGTAGGCGGGCGGGCACTATCCGGCCAGAGAGACGAGACGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTTT
CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACTC
GTTTTCTATTTATCAGGATTTTCGAAACCTTTTAAGGTTCGAGATTTTTTAAAATTTTTACAGAA
GGAGTTTTGGCCCCAAACTTGGTACACATGATCATTGTATTTTTGTTGGCAGGCAAAAAAAACTC
AACTAAAAACTCGAAGCGTACAAGATTTTCTGACCATTTGAAAAAAATATCCCCATTTCAGACAC
TTTAATGGCTACTAGAAGCAAACCTGTAAATCTCAAATGCTCTCTAAGGGAGTATGAGTTCTCGA
GGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCTCGGCCCCCCCAATCACCGGAACCCCAAAATCGCCAGTCAGGTTCTCCGACGATA
GTGTCCCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
Found at i:15653830 original size:26 final size:26
Alignment explanation
Indices: 15653792--15653844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15653782 TTGGACCGAT
* *
15653792 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15653818 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15653844 C
1 C
15653845 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15655455 original size:15 final size:15
Alignment explanation
Indices: 15655435--15655466 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
15655425 CCGGGCCCCT
15655435 CCGATCGTCGGAACC
1 CCGATCGTCGGAACC
15655450 CCGATCGTCGGAACC
1 CCGATCGTCGGAACC
15655465 CC
1 CC
15655467 AATGCCCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.44, G:0.25, T:0.12
Consensus pattern (15 bp):
CCGATCGTCGGAACC
Found at i:15655605 original size:26 final size:26
Alignment explanation
Indices: 15655576--15655628 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655566 CCGATCTGAT
15655576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15655602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15655628 C
1 C
15655629 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15655764 original size:904 final size:894
Alignment explanation
Indices: 15653006--15655845 Score: 3811
Period size: 904 Copynumber: 3.2 Consensus size: 894
15652996 CGAGCGTGTT
* ** * * * * * **
15653006 GGATGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCTGCGTGCTACCTATCCTGCTGTCACAACCC
1 GGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCC
* * * *
15653071 TC-GATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG
66 TCAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAG
* * * * *
15653135 CGAGCGGGCTGGTGGGCACTACGTCGCCCAGAGAGGTGGGATGAGCAAGCCGTGGATCGATAGGG
131 CGAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
* *
15653200 TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCCTTGCCAATGCCATTTTTCTGGCTTGTAA
195 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAA
*
15653265 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAAAGACGACTCGTTTTATCTAT
260 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-TTT-TCTAT
* * * *
15653330 TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGGGCTTTG
323 TTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
15653395 GCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAA
388 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
15653460 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGAC-CTTTTAATGG
453 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACAC-TTTAATGG
* * *
15653524 CTACTGGCAACAGACCTGTAAATTCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
517 CTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
15653589 TAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCG--CA--
582 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGTACACC
* * * **
15653650 --CAGACCCCT-CGCCCACCCAGATCGTTGGAACCCTAATGTTGTCGGTCAGGTTCTCCGACGAT
647 CCCAGGCCCCTCCG-CCACCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * *
15653712 GGTGTCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAGCC
710 GGTGTCCCAGC-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* ** ** * *
15653776 TTCATTTTGGA-CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCG
774 CTC-GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCG
* * *
15653840 TATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCGACCAGAGGGGCG
838 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
** * * ** *
15653897 GGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCTTGTTGCCACAACCC
1 GGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCC
* * *
15653962 TCA-ATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG--AA-A-
66 TCAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAG
* * * *
15654022 CGAGC--G-GGTGGGCACTACGCCGGCCAGAGTGGCAGGATGCGCAAGTCGTGGATCGATAGGGT
131 CGAGCGGGCGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* **
15654084 GGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCCATGCCAATGTGATTTTTCTGGCTTGTAAA
196 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAA
15654149 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
261 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
15654214 TCACGATTTTCAAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCT
326 TCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* *
15654279 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACT
391 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* ** *
15654344 TGAAGTCCACAAGATTTTGTGACCATTTGAAAAAGTATCCCCATTTCAGACACTTTAATGGCTAC
456 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
15654409 TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTTGAGGTTTGATGAG
521 TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15654474 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATTGCACATCATGTGCGTACACCCCCT
586 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGTACACCCCCA
* * *
15654539 GG-CCC-CC-CCA----ATCGCCGGAACCCCAATGCCGTCGGTAAGATTCTCCGACGATGGTGTC
651 GGCCCCTCCGCCACCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTC
* ** * *
15654597 CCGACGC-AGAAAAATGTGGCACCAGCACATGCCTAAGCCCAGCATGTGCTACAGCAACCCTCGG
716 CC-A-GCAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
15654661 TCC-AGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAAC-CCTGTATG
779 TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC-GTATG
* *
15654724 CCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
842 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * ** * ** *
15654777 GGGTGCGCAAGTTGGGGATCGATCGGGTCCCCCTCTATGTGTTGTTGATCCTACTATCACAACCC
1 GGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCC
* * * * *
15654842 T-TGATCCAATCGGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAAAGAG
66 TCAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAG
* * *
15654906 CGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGCCGGGATGCGCAAGCCATGGATCGATAGGG
131 CGAGCGGGCGG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
15654971 TGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAA
195 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAA
*
15655036 ATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
260 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
15655101 TTCACAATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAA-GTTTTCAGAAAGAGTTTTGGC
325 TTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* *
15655165 CCCAAACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTACAAAC
390 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
15655229 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
455 TCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
15655294 ACTGGCAACAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
519 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
15655359 AGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACGCATAGCACACCATGTGCGTACACCCC
584 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGTACA-CCC
* **
15655424 TCCGGGCCCCTCCGATCGTCGGAACCCCGATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCC
648 -CCAGGCCCCTCCG--C--C---A-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * **
15655489 GGCGATGGTGTCCCAGCAAATAAAAATACGATACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
704 GACGATGGTGTCCCAGC-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
15655554 GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
768 GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
* * * *
15655619 CTCCGTATGCCTAAGTCAACTCGCGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCA
833 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
15655681 GGATGCTCAAGCTGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCAAACCTACTACCGCAACCC
1 GGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCC
* * * *
15655746 TCAG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCAACGAAACGAG
66 TCAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAG
* * *
15655810 TGGGCGGGCGGGCGGGCACTACGCCGGCAAGAGAGG
131 CGAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGG
15655846 NNNNNNNNNN
Statistics
Matches: 1700, Mismatches: 201, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
878 1 0.00
879 45 0.03
880 243 0.14
881 294 0.17
882 7 0.00
883 165 0.10
884 7 0.00
885 1 0.00
886 61 0.04
887 206 0.12
888 211 0.12
889 5 0.00
890 3 0.00
891 110 0.06
894 1 0.00
896 1 0.00
899 1 0.00
902 2 0.00
903 1 0.00
904 329 0.19
905 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCC
TCAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAG
CGAGCGGGCGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGTACACCCCCA
GGCCCCTCCGCCACCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTC
CCAGCAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
Found at i:15659910 original size:16 final size:16
Alignment explanation
Indices: 15659886--15659948 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
15659876 GGATTTTTTT
*
15659886 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
15659902 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
15659919 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
15659934 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
15659949 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:15659956 original size:33 final size:33
Alignment explanation
Indices: 15659891--15659959 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
15659881 TTTTTAGGAC
*
15659891 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
15659924 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
15659957 TTT
1 TTT
15659960 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:15661330 original size:12 final size:12
Alignment explanation
Indices: 15661315--15661394 Score: 63
Period size: 12 Copynumber: 6.7 Consensus size: 12
15661305 ACAGGGTGGC
*
15661315 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
15661327 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
15661339 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
*
15661351 TGGTTGGGTAAT
1 TGGTCGGGTAAT
* *
15661363 TGGTCGGGGAGT
1 TGGTCGGGTAAT
*
15661375 TGGTTGGGTAAT
1 TGGTCGGGTAAT
*
15661387 TAGTCGGG
1 TGGTCGGG
15661395 GCAGTTCGAC
Statistics
Matches: 50, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
11 1 0.02
12 48 0.96
13 1 0.02
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.33
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:15661395 original size:24 final size:24
Alignment explanation
Indices: 15661315--15661400 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
15661305 ACAGGGTGGC
* **
15661315 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
*
15661339 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
15661363 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
*
15661387 TAGTCGGGGCAGTT
1 TGGTCGGGG-AGTT
15661401 CGACGTCGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
24 51 0.93
25 4 0.07
ACGTcount: A:0.16, C:0.06, G:0.45, T:0.33
Consensus pattern (24 bp):
TGGTCGGGGAGTTGGTTGGGTAAT
Found at i:15661463 original size:13 final size:13
Alignment explanation
Indices: 15661448--15661493 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
15661438 CGTTTCATTT
15661448 TTTTGTTTGTTGT-
1 TTTTGTTTGTT-TA
*
15661461 TTTTTTTTGTTTA
1 TTTTGTTTGTTTA
*
15661474 TTTT-TTTGTTTG
1 TTTTGTTTGTTTA
15661486 TTTTGTTT
1 TTTTGTTT
15661494 AATATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 12 0.41
13 17 0.59
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (13 bp):
TTTTGTTTGTTTA
Found at i:15661467 original size:17 final size:16
Alignment explanation
Indices: 15661445--15661488 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
15661435 TTTCGTTTCA
*
15661445 TTTTTTTGTTTGTTGTT
1 TTTTTTTGTTTATT-TT
15661462 TTTTTTTGTTTATTTT
1 TTTTTTTGTTTATTTT
*
15661478 TTTGTTTGTTT
1 TTTTTTTGTTT
15661489 TGTTTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (16 bp):
TTTTTTTGTTTATTTT
Found at i:15663292 original size:887 final size:884
Alignment explanation
Indices: 15661559--15667714 Score: 8104
Period size: 887 Copynumber: 7.0 Consensus size: 884
15661549 GGTATCTACA
* *
15661559 CCGTATGCTTAGA-TAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGT
1 CCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
15661623 TGCTCAGCTGGCTAGAGGGGAGGGATGCGTAAGCCGGGGATAGGTCGGGTCCCCCTCTACGTGCT
65 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * * *
15661688 ACCGATCTTGCTGCCGTAACCCTC-GATCTGATCCAATCTTAGACTGAGAATGAACTCCGTATGC
130 GCCGATCCTGCTGCCGTAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
*** * * *
15661752 CTAAGCCAAAAAATGAAACGAGCGGACGGGCAGGCGGGCACTATGCCGGCCAGAGAGGCGGGATG
194 CTAAGCCAACCGACGAAAC--G-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * *
15661817 AGCAAGCCGTGGATTGATAAGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCA
255 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCA
*
15661881 ATGCCATTTTTTCTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
320 ATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
15661946 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAA
384 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* *
15662011 ATGTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
449 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATG
*
15662076 CACAAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGT
513 CAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGT
* * *
15662141 CCCCATTTCAGACACTTTAATGCCTACTGGTAGCAAACATGTAAAATCTCAAATGCTCTTTAAGG
576 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
15662206 GGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATACGGGCCAAGCACCAGCACCC
641 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * **
15662271 ATCGCACATCATGTGCGCACACCCCCCCTGTCCCCCCCATCGCCGGAACCCCAATGCCA-TTAGT
706 ATCGCACATCATGTGCGCACACCCCCTC-GGCCCCCCCATCGCCGGAACCCCAATGCCACCGA-T
* * * * * *
15662335 CAGGTTCTCTGGCGATGGTGTCCCGGCTAAGAAAAATACGGCACCA-CGACATACCCGAGCCCAG
769 CAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGC-ACATGCCCGAGCCCAG
* * *
15662399 CATGTGCTGCCGGAACCCTCGGTCCGGTCTGATCGTAGACTGGGAATGAACT
833 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
15662451 CCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGA
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
15662516 GCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGG-CTGGGTCCCCCTCTGCGTGCT
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCT
** *
15662580 GTTGATCCTGCTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
130 GCCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
15662645 TAAGCCAACCGATGAAACGGGCGGGCGGGCGAGCACTACGCCGACTAGAGAGGCGGGATGCGTAA
195 TAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* *
15662710 CCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTTTGCCGTGCCAATGCC
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAATGCC
* * * *
15662775 ATTTTTTTTGGCTTGTAAATTCATAGAATGGTCCCTTAAACCTTCATGTGAAGTTTCATAGCAAG
325 A-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
*
15662840 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
15662905 TTTAGAAGGAGTTTGGGCCCGAAACTTGGTAGACATGATCCTTGTATTGTTTTTGGCATGCACAA
454 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCACAA
* * * *
15662970 AACAATTCAGCCAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
15663035 TTAGACACTTTAATGGCTACTGACAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
15663100 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAACTACCAGCACCAATTGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
15663165 ATCTTGTGCGCACACCCCCTGGGTCCCCCCCATCGCTGGAACCCCAATGCCACCGATCAGGTTCT
713 ATCATGTGCGCACACCCCCTCGG-CCCCCCCATCGCCGGAACCCCAATGCCACCGATCAGGTTCT
* ** * *
15663230 CCAACGATGGTGTCCCGACGAAGAAAAATATGGAACCAGCACATGCCCGAGCCCAGCATGTGCTA
777 CCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
15663295 CCGCGA-CC-C--T-C-G---G-TC-----C-----A-G---T
842 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
15663314 CCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** *
15663377 GCACAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCTGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * *
15663442 TCGATCTTGCTACCGCAACCCTC-GATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
131 CCGATCCTGCTGCCGTAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
15663506 TAAGCCAACCGATGAAATGGCCAGGCGGGCAGGTGAGCACTACGTCGGCTAGAGAGGCGGGATTC
195 TAAGCCAACCGACGAAACGGGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGGCGGGATGC
* * * *
15663571 GCAAGCCATTGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTATGCCGTGCCAA
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAA
*
15663636 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
321 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * ** *
15663701 AAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGTTTCTAGATTTTTGAAAAT
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
15663766 TTTTTCAGAGGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCA
451 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCA
* *
15663831 TAAAAAAATTCAG-TGAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
515 CAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
15663895 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
15663960 TGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATCTAAGGGCCAAGTACCAGCACCCATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
15664025 GCACATCATGTGCGCATACCCCCT-AGTCCCCCCATCGTCGGAACCCCAATGCCGCCGGTCAGGT
709 GCACATCATGTGCGCACACCCCCTCGGCCCCCCCATCGCCGGAACCCCAATGCCACCGATCAGGT
* ** * *
15664089 TCTTCGGTGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTG
774 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
15664154 CTGCCGCAACCCTCGGTCC-G---G-TC-----C---------A--
839 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
*
15664179 ----AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * **
15664239 GCTCAGCCGGCCAGAAGGGCGGGATGTGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGTATGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * ** **
15664304 CCGATCCTACTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
15664369 AAGCCAACCGACGAAATGAGTGGGTGGACAGGCGAGCACTACGCCGACCAAAGTGGCGGGATGCG
196 AAGCCAACCGACGAAACG-G-GCG-GG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
* * * *
15664434 CAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCCATGCCAAT
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAAT
*
15664499 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCA
322 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * ** * * *
15664564 AGATGACTCGTTTTCTTTTTTTCATGATTTTCAAAACTTTTTACAGTTCGGAATTTTTTTAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
** *** *
15664629 TTTTCAGAAAAAGTTTTGTATCCAAACTTGGCAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
452 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC
15664694 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
15664759 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15664824 TGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
15664889 ACATCATGTGTGCACACGCACCTCGGCCCCCCCGATCGTCGGCACCCCAATGCCGCCGGTCAGGT
711 ACATCATGTGCGCACAC-CCCCTCGGCCCCCCC-ATCGCCGGAACCCCAATGCCACCGATCAGGT
* * *
15664954 TCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGTGCCCAGCATGTG
774 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * *
15665019 CTGTCGCAACCCTCATTTCGGTCTGATCTTAGACTGGGAATGAACT
839 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
15665065 CCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGGGTGCGAGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
15665130 GCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCTCCTCTACGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
*** ** * *
15665195 CCGATCCTGCTGCTACAACCCTTGGTCTGGTCCAATCTCAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
15665260 AAGCCAACCGACAAAATGAGCAGGCGGGCGGGCACTACGTCGTCCAGAGAGGCGGGATGTGCAAG
196 AAGCCAACCGACGAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
15665325 CCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCGTGCCAATGCCA
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAATGCCA
* *
15665390 TTTTTCAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGAC
326 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
15665455 GACTCATTTTTTATTTTTCACGA-TTTTAAAAATGTTTTACGGTTCGGGATTTTTTAAAATTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAATTTTT
15665519 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAA
* *
15665584 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
15665649 CAGACACTTTAGTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGAGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
15665714 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCTATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ***
15665779 TCATGTGTGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTTTG-TCAGGTTC
714 TCATGTGCGCACACCCC-CTCGGCCCCCCC-ATCGCCGGAACCCCAATGCC-ACCGATCAGGTTC
* * ** ** * * * *
15665843 TCCGGCGATGTTGTGTCGGTGAA-AAAAATGCGGCACCAGCAAATGGCCAAGCCCAACATGTGCT
776 TCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
15665907 GCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACT
841 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
15665951 CCGTTTGCTTAGACTGGGAATAAACTCTGTATGCCTAAGTTAACCTATGAAACGAGCGTGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
15666016 GTTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCT-T---TG-T-
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* ** * *
15666075 --G----TGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCT
131 CCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
*
15666134 AAGCCAACCGACGAAATTAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
196 AAGCCAACCGACG-AA--A-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
*
15666199 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAAT
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAAT
* * **
15666264 GCCATTTTTCTGGCTTATAAATTCGTACAATTTTCCCTTAAGCCTTCATGTGAAGTTT-ATGGCA
322 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* **
15666328 AGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
15666393 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
452 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC
* *
15666458 AAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
15666523 TTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTAAAATACTCTTTAAGGGTGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * **
15666588 TGTGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
15666653 ACATCATCTGCGCACACCCCC-CTGGCCCCCCTGAAT-GCCGGAACCACAATG-CAGCCGATCAG
711 ACATCATGTGCGCACACCCCCTC-GGCCCCCC--CATCGCCGGAACCCCAATGCCA-CCGATCAG
* *
15666715 GTTCTCCGTCGATGGTGTCCC-AGCGAAGAAAAATGCGGCACCACCACATGCCCGAGCCCAGCAT
772 GTTCTCCGACGATGGTGTCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
15666779 GTGCTGCCGCAACCCTCAGG-CCGGTCCAATCTTAGACTGGGAATGAACT
836 GTGCTGCCGCAACCCTC-GGTCCGGTCCGATCTTAGACTGGGAATGAACT
* ** * * *
15666828 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCATCCGGGT
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
15666893 GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGAGTCCCTCTCTGTGTGTTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
** * ** * *
15666958 CCGATCCCACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCT
131 CCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** *
15667023 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACATCGGCTAGAGAGGCGGGATGCG
196 AAGCCAACCGACG-AA--A-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
* **
15667088 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGTGTGCCAAT
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAAT
* *
15667153 GCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCA
322 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
** * * *
15667218 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGAATTTTTAAAAAA
387 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG-ATTTTTTAAAAT
* ** *
15667283 ATTTT-AGAATTAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
451 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA
* *
15667347 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
15667412 ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
15667477 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * *
15667542 CACATCATTTACGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGT
710 CACATCATGTGCGCACACCCCCTCGGCCCCCCC-ATCGCCGGAACCCCAATGCCACCGATCAGGT
* * **** *
15667607 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCATCACATAATAGAGGCCAGCATGTG
774 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
15667672 CTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
839 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
15667715 GGGATAGGGG
Statistics
Matches: 4649, Mismatches: 519, Indels: 194
0.87 0.10 0.04
Matches are distributed among these distances:
860 1 0.00
861 199 0.04
862 730 0.16
863 14 0.00
864 377 0.08
865 197 0.04
866 7 0.00
867 7 0.00
869 1 0.00
870 2 0.00
872 1 0.00
874 58 0.01
875 6 0.00
876 47 0.01
877 498 0.11
878 165 0.04
881 4 0.00
882 4 0.00
883 1 0.00
884 1 0.00
885 3 0.00
886 193 0.04
887 754 0.16
888 108 0.02
889 457 0.10
890 431 0.09
891 200 0.04
892 181 0.04
893 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
CCGATCCTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAATGCCA
TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCTCGGCCCCCCCATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCCGA
CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
Found at i:15665082 original size:26 final size:26
Alignment explanation
Indices: 15665046--15665095 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15665036 TCGGTCTGAT
15665046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15665072 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15665096 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15666749 original size:877 final size:884
Alignment explanation
Indices: 15661559--15673125 Score: 9774
Period size: 889 Copynumber: 12.9 Consensus size: 884
15661549 GGTATCTACA
* *
15661559 CCGTATGCTTAGA-TAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGT
1 CCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
15661623 TGCTCAGCTGGCTAGAGGGG-AGGGATGCGTAAGCCGGGGATAGGTCGGGTCCCC-CTCTACGTG
65 CGCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGCCGGGGATCGGTCGAGTCCCCTCTGTA--TG
* * * ** *
15661686 CTACCGATCTTGCTGCCGTAACCCTC-GATCTGATCCAATCTTAGACTGAGAATGAACTCCGTAT
127 CT--CGA---TACTGCCGTAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
*** * * * * **
15661750 GCCTAAGCCAAAAAATGAAACGAGCGGACGGGCAGGCGGGCACTATGCCGGCCAGAGAGGCGGGA
186 GCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGA
* * * *
15661815 TGAGCAAGCCGTGGATTGATAAGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGC
251 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGC
*
15661879 CAATGCCATTTTTTCTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
316 CAATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * **
15661944 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG-ATTTTTT
380 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTT
* * * *
15662008 CAAATGTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
445 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
*
15662073 ATGCACAAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAG
510 ATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAG
* * *
15662138 TGTCCCCATTTCAGACACTTTAATGCCTACTGGTAGCAAACATGTAAAATCTCAAATGCTCTTTA
573 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
15662203 AGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATACGGGCCAAGCACCAGCA
638 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* ***
15662268 CCCATCGCACATCATGTGCGCACACCCCCCCTGTCCCCCCC-ATCGCCGGAACCCCAATGCCATT
703 CCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCC
* * * * * * *
15662332 AGTCAGGTTCTCTGGCGATGGTGTCCCGGCTAAGAAAAATACGGCACCA-CGACATACCCGAGCC
767 GGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGC-ACAT-GCCAAGCC
* * * *
15662396 CAGCATGTGCTGCCGGAACCCTCGGTCCGGTCTGATCGTAGACTGGGAATGAACT
830 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
15662451 CCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGA
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * **
15662516 GCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGG-CTGGGTCCCCCTCTGCGTGCT
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GAGT-CCCCTCTGTATGC-
* * * **
15662580 GTTGATCCTGCTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
128 -TCGA---TACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
15662645 TAAGCCAACCGATG-AA--A-CGGGCGGGCGGGCGAGCACTACGCCGACTAGAGAGGCGGGATGC
189 TAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGC
* * * *
15662706 GTAACCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTTTGCCGTGCCAA
254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAA
* * * *
15662771 TGCCATTTTTTTTGGCTTGTAAATTCATAGAATGGTCCCTTAAACCTTCATGTGAAGTTTCATAG
319 TGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* ** *
15662836 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGG-ATTTTTTAAA
383 CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAA
* * * * *
15662900 ATTTTTTTAGAAGGAGTTTGGGCCCGAAACTTGGTAGACATGATCCTTGTATTGTTTTTGGCATG
448 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * * *
15662965 CACAAAACAATTCAGCCAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCG
513 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
15663030 CCATTTTAGACACTTTAATGGCTACTGACAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
578 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
15663095 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAACTACCAGCACCAAT
643 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** * * *
15663160 TGCACATCTTGTGCGCACACCCCCTGGGTCCCCCCC-ATCGCTGGAACCCCAATGCCACCGATCA
708 CGCACATCATGTGCGCACACCCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * ** * *
15663224 GGTTCTCCAACGATGGTGTCCCGACGAAGAAAAATATGGAACCAGCACATGCCCGAGCCCAGCAT
772 GGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCAT
* *
15663289 GTGCTACCGCGA-CC-C--T-C-G---G-TC-----C-----A-G---T
836 GTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
15663314 CCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * ** * **
15663377 GCACAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCTGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGT-CCCCTCTGTATGC--
* * **
15663442 TCGAT-CTTGCTACCGCAACCCTC-GATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
128 TCGATAC-TG---CCGTAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * ** *
15663505 CTAAGCCAACCGATGAAATG-GCCAGGCGGGCAGGTGAGCACTACGTCGGCTAGAGAGGCGGGAT
188 CTAAGCCAACCGACGAAATGAG-CGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGAT
* * * * *
15663569 TCGCAAGCCATTGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTATGCCGTGCC
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
*
15663634 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
317 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* ** * ** *
15663699 GCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGTTTCTAG-ATTTTTGAA
382 GCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAA
* * *
15663763 AATTTTTTCAGAGGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGT
447 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* *
15663828 GCATAAAAAAATTCAG-TGAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
512 GCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
15663892 CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
576 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15663957 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATCTAAGGGCCAAGTACCAGCACCC
641 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** * *
15664022 ATCGCACATCATGTGCGCATA-CCCCCTAGTCCCCCC-ATCGTCGGAACCCCAATGCCGCCGGTC
706 ATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* ** * * *
15664085 AGGTTCTTCGGTGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCA
771 AGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CAAGCCCAGCA
15664150 TGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C---G---G---T
835 TGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
15664176 CC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
15664239 GCTCAGCCGGCCAGAAGGGCGGGATGTGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGTATGCTG
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGT-CCCCTCTGTATGCT-
* **
15664304 CCGATCCTACTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
129 -CGA---TACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * *
15664369 AAGCCAACCGACGAAATGAGTGGGTGGACAGGCGAGCACTACGCCGACCAAAGTGGCGGGATGCG
190 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
* * *
15664434 CAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCCATGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAAT
*
15664499 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCA
320 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * * * *
15664564 AGATGACTCGTTTTCTTTTTTTCATGATTTTCAAAACTTTTTACAGTTC-GGAATTTTTTTAAAT
385 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAAAT
** *** * *
15664628 TTTTTCAGAAAAAGTTTTGTATCCAAACTTGGCAGACGTGATCCTTGTATTTTTCTTGGCATGCA
450 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
15664693 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
15664758 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
15664823 GTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
15664888 CACATCATGTGTGCACACGCACCTCGGCCCCCCCGATCGTCGGCACCCCAATGCCGCCGGTCAGG
710 CACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
**
15664953 TTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGTGCCCAGCATGT
774 TTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CAAGCCCAGCATGT
* * * *
15665018 GCTGTCGCAACCCTCATTTCGGTCTGATCTTAGACTGGGAATGAACT
838 GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
15665065 CCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGGGTGCGAGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ***
15665130 GCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCTCCTCTACGTGCTA
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCC-CCTCTGTATGCT-
* * ** * ** *
15665195 CCGATCCTGCTGCTACAACCCTTGGTCTGGTCCAATCTCAGACTGGGAATGAACTCCGTATGCCT
129 -CGATACTGCCG-T--AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * *
15665260 AAGCCAACCGACAAAATGA----GCAGGCGGGCGGGCACTACGTCGTCCAGAGAGGCGGGATGTG
190 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
* *
15665321 CAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCGTGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAAT
*
15665386 GCCATTTTTCAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
320 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * *
15665451 GGACGACTCATTTTTTATTTTTCACGATTTT-AAAAATGTTTTACGGTTCGGG-ATTTTTTAAAA
385 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACT-TTTTACGGTTCGGGAATTTTTTAAAA
15665514 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
449 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
15665579 ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCC
514 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
15665644 CATTTCAGACACTTTAGTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGAG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
15665709 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCTATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ***
15665774 GCACATCATGTGTGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTTTGTCAG
709 GCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * ** * * *
15665839 GTTCTCCGGCGATGTTGTGTCGGTGAA-AAAAATGCGGCACCAGCAAATGGCCAAGCCCAACATG
773 GTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACAT-GCCAAGCCCAGCATG
*
15665903 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACT
837 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
15665951 CCGTTTGCTTAGACTGGGAATAAACTCTGTATGCCTAAGTTAACCTATGAAACGAGCGTGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
15666016 GTTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTTGGGTCCCC-CT-T-TG-T-G
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCTCTGTATGCTCG
* * * *
15666076 -TGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
131 ATACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
15666140 ACCGACGAAATTAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCC
196 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
15666205 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATT
* * **
15666270 TTTCTGGCTTATAAATTCGTACAATTTTCCCTTAAGCCTTCATGTGAAGTTT-ATGGCAAGACGA
326 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** **
15666334 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAG-ATTTTTTAAAATTTTTTC
391 CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAAATTTTTTC
15666398 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
456 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
15666463 CATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
521 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
15666528 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTAAAATACTCTTTAAGGGTGTGTGTGT
586 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* **
15666593 TCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCGCACATC
651 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
15666658 ATCTGCGCACACCCCCCTGGCCCCCCTGAAT-GCCGGAACCACAATGCAGCCGATCAGGTTCTCC
716 ATGTGCGCACACCCCCCCGGCCCCCCCG-ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
15666722 GTCGATGGTGTCCCAGCGAAGAAAAATGCGGCACCACCACATGCCCGAGCCCAGCATGTGCTGCC
780 GACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCATGTGCTGCC
* *
15666787 GCAACCCTCAGGCCGGTCCAATCTTAGACTGGGAATGAACT
844 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* ** * * *
15666828 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCATCCGGGT
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
15666893 GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGAGTCCCTCTCTGTGTGTTG
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCC-CTCTGTATGCT-
* * *
15666958 CCGATCCCACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCT
129 -CGAT---ACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
15667023 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACATCGGCTAGAGAGGCGGGATGCG
190 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
**
15667088 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGTGTGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAAT
* *
15667153 GCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCA
320 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * *
15667218 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGAATTTTTAAAAAA
385 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAAAT
* ** * *
15667283 ATTTT-AGAATTAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
450 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
15667347 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
15667412 ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
15667477 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
15667542 CACATCATTTACGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGT
710 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * * *** *
15667607 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCATCACATAATAGAGGCCAGCATGTG
775 TCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCA-AGCCCAGCATGTG
* *
15667672 CTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAGGGA-T
839 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGA---ACT
* *** * * * * * *
15667720 -AGGGGGCCAATATA-AGGGCCAA-GTACCAGTACC-CATCGCACATTATGTGCCCACACTTCCC
1 CCGTATG-C-TTAGACTGGG--AATG-A--ACT-CCGTAT-GC-C--TAAGT---CA-A---CCC
* ** * * * * * ** * *
15667781 CCGACCCCTCCAATCGT-CGGAAC-CCCAATGTCGCCGGTCAG-GTTCTCCGACGATAGTGTTTC
47 ACGA----AACGAGCGTGCGG-GCGCTC-A----GCCGGCCAGAG------G--GGCAG-GATGC
****** * * * * * * * **
15667843 GGCGAAGAAAAATAT-GGCACTAG-CACATGCTCG-A-GCCCAGCATGTGCTACCACAACCCTC-
93 -GC-AAGCCGGGGATCGG-TCGAGTCCCCT-CT-GTATGCTC-G-A--TACTGCCGTAACCCTCA
* ***
15667903 GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATG
149 G-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----CTA--AGCCAAC-C-G-A--
* * * * ** * * * * *
15667968 CCTAAGTCAACCCACGAAACGAGCGTGCAGG-AGCT-CAGCCGGCCAGAGGGGCGGGATGCGTAA
201 -CGAAAT-GA---GCG-GGCGGGCGGGCGGGCA-CTACA-CCGGCCAGAGAGGCGGGATGCGCAA
* * * *** ** * * * * *
15668031 GCCGAGAATTGGCCGGGTCCCCCTCTGCGTGCTGCCAAGCCTGCT-GCCCCAACCTTCAGT-TTG
258 GCCGTGGATCGATAGGGT---GGT-AG-GTG--G----G--T-TTAGGCAC-ATCTTCA-TATT-
* ** * * * ** ** ***
15668094 GTCTGATCTTAGACTGGGAATG-AACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGA
306 -TCTG--C--CG--TGCCAATGCCA-TT--T-T-TCT--GGC--TTG-T-AAA--TTCATAC--A
* * * * ** * * **** * **
15668158 AGGGGGGGCAC-TACGCCGGCCA-GAGAGGCGGGATGTGCAAG-CTGTGGA-TCGATAGGGTGGT
349 A---TGGTCCCTTAAGCC-TTCATGTGAAGTTTCATG-GCAAGAC----GACTC-AT---TTTCT
* * * * ** * * ** ***
15668219 AGGTTGGTTTAGGCAC-ATCTTC-ATA-TTTCTGCCATGCCAATGCCATTTTTCT-GGCTTGTAA
401 A--TT--TTT---CACGATTTTCAAAACTTTTTACGGT-TC--GGGAATTTTT-TAAAATT-T--
* * * ** * * * *
15668280 ATTCATACAATG-GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC--GA--CTTGTTTTC
452 TTTC--AGAAGGAGT---TTTGGCC-CCA----AA----CTTGG-TAGACGTGATCCTTGTATT-
** *** * ** * *** * * * **
15668340 TATTTTTTACGATTTTC--AAAACTT--TTTTAAGGTTCGATATTTTTTAAAATTTTTTCAGAAT
501 T-TTTTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGA-A--GTGTACAAGATTTT--G--T
*** ** ** *** * * * ** ** * ** *
15668401 GAGTTTTTGCCCAAACCTGGTAGACGTGATCCTTGTA-TTTTTGTTGGC-A-TGCACAAAAAATT
557 GACCATTTG-AAAAAAGT-GTCCCCAT--TTC-AG-ACACTTTAATGGCTACTG-GCAGCAAA-C
* * * ** * ** *
15668463 CAGCTAAAAAT-TCGAAGTG-TACAAGATTT-TGTGGCCATTTGAAAAAAGTT-TCCCTGTTTTA
614 CTG-T-AAAATCTC-AAATGCT-C----TTTAAG-GG-GGTGTG-----AGTTCT-CGAGGTTT-
* * * * ** * * *** * * ****** * *
15668524 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
662 --GA---TGAGGGATA--GGGGGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCAT-CGC
* * * * * * ******* ****** * * *
15668589 TCTTAAGGTTTGATG-AGAGATAGGAGGCCAATATAATGGCCAAGTACCAGCACCC-AT--CGAA
711 ACATCA--TGTG-CGCACACCCCCCCGGCCCCCCCGATCGCC--GGA--A-C-CCCAATGCCG-C
* * * * *** * ** ** * ** ** * ** *
15668650 C-ATCAAGTGCGCAC-ACCCCCCGG-CTCCTC-TTGATCACCAGAA--CACCAATACCACCGGTC
766 CGGTCAGGTTCTC-CGA--CGATGGTGTCC-CGGCGA--AGAAAAATGCGGCACCAGCACATGCC
* * * ***** * * ** ** *
15668709 AGGTTCTCCAGTGATGGTGC-CCCGGCAAAGAAAAATACGACACCAGCAAATGCCCGAGCCCTGC
825 AAG--C-CCAG-CAT-GTGCTGCC-GCAACCCTCAGTCCG-GTCC-G---AT--CTTAG-ACTG-
**
15668773 ATGTGCTACCGCAACCCTCGGT
875 --G-G--AATG-AA----C--T
* * * * *
15668795 CCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACG
1 CCG-TATG--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * **
15668860 GGTGCTCAGCCGGCCAGAGGGGCAGCATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
63 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGT-CCCCTCTGTATG
* * ** * * *
15668925 CTGCCAATCCTGCTGCCACAACCCTCAGTCCGATATGATCTTAGACTGGAAATGAACTCCGTATG
127 CT--CGA---TACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ****
15668990 CCTAAGCCAACCGACGAAACGAGCGGGCAGGCAGGCGGGCACTAC-GTAACCAGAGAGGCGGGAT
187 CCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGAT
* *
15669054 GCGCAAGCCGTGGATCGATA-GGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCCATGCC
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
* *
15669118 AATGCCATTTTTTTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
317 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* **
15669183 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTT-GGG-ATTTTTTA
382 GCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGGGAATTTTTTA
* * * *
15669246 AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTTGGCA
446 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
* *
15669311 TGCACAAAAATATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGT
511 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
15669376 CCCCATTCCAAACACTTTAATGCCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
576 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15669441 GAGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACTAGCACCC
641 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** * *
15669505 ATCGCACATCATGTGCACACACTCCCCCTTAG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGG
706 ATCGCACATCATGTGCGCACAC-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
* * * ** * * * ** *
15669569 TCAGGTTCTTCGACGATGGTGACTCGATGAAGAAAAATACGGCAGCAGCACAAGCCTGTGGCCAG
769 TCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCC-AAGCCCAG
*
15669634 CATGTGCTGTCGCAA----C---CC--T-CGA---T---C------TG-A-T
833 CATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
15669662 CCG-AT-CTTAGACTGAGAATGAACTCCGAATTCCTAAGTCAACCCATGAAACGAGCGTACGGGT
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * * * * **
15669725 GCTCAGCCGGCCAGAGGGG-TGGATGCGCAAGTTGGGGATTGTTCGGGTCCCCCTATGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGT-CCCCTCTGTATGCT-
* * * * ** ** * *
15669789 CCGATCCTGCTGCTGCAACTCTCAATCAAGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCT
129 -CGATACTGC--C-GTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * * * * * *
15669854 AAGCCAACCGATTAAACGAACGGGCGGGCGGGCGGGCACTACCCCAGCCAGAGAGGAGAGATGTG
190 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
* *
15669919 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCCATGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAAT
15669984 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
320 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * *
15670049 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAATA-TTTTTACGGTTCGAG-ATTTTTTAAAA
385 AGACGACTCATTTTCTATTTTTCACGATTTTCAAA-ACTTTTTACGGTTCGGGAATTTTTTAAAA
* * * ** *
15670112 TTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATACTTGTGGTTTTATTGGCATGC
449 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* * *
15670177 ACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCC
514 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
15670242 GATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
15670307 TGTGAGTTCTCGAAGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
** * * * * *
15670372 GCACATCATGTGCGCACACCCCCCATG-ACCCCCGATCGTCGAAACCCCAATGCCACCGGTTAGG
709 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * ** * * *
15670436 TTCTCCAATGATGGCATCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
774 TTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CAAGCCCAGCATGT
* * * * * *
15670501 GCTACTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
838 GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
15670548 CCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGT
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
15670613 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTC-AGGTCCCCTTCTGTGTGCT
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGA-GTCCCC-TCTGTATGCT
* ** * ** *
15670677 ACCGATCCTGCTACCACAACCGTC-GATCAC-GTCCAATCTTAGACTGGGAATCAACTCCGTATG
129 --CGATACTG---CCGTAACCCTCAG-TC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
15670740 CCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGGCGGGAT
187 CCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGAT
* * * *
15670805 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTCATGCC
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
* * ** *
15670870 AATGCCATTTTTGTGGCTTGAAAATTCATGGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTG
317 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * ** * * *
15670935 GCAAGACGACTCGTTTTCTATTTTTTAAGATTTTTGAAACTATTTACGGTTTGGG-ATTTTTTTA
382 GCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAA
* * *
15670999 AATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
447 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* ** * *
15671064 GCGCAAATCAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTT
512 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
15671129 GCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
577 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
15671194 GGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
642 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
15671259 TCGCACATCATGTCCGAACA-CCCCCTGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCA
707 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * * * * *
15671323 AGTTCTCCTG-CGATGGTGTCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCA
772 GGTTCTCC-GACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCA
* * * *
15671387 TTTACTGCCGCAA-CC-C-GT---AT--GA-C-TA-A----G--TCAAC-
835 TGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
15671419 CTGTA----T-GACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTACGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * **
15671479 GCTCAGCCAGCCAGA--GG--GGAT-CG--A-TC---G---GGTC----CCCCTCTGCGTGCTAC
66 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCTCTGTATGCT--
* * ** * ** *
15671526 CAATCCTGCTGCCACAACCCT-TGATCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCT
129 CGA---TACTGCCGTAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
** ** * * *
15671590 AAGCCAATGGACGAAATGAGTAGGCGGACGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCG
190 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCG
*
15671655 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAAT
* * *
15671720 GCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCACGGCA
320 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * ** * *
15671785 AGACGACCCGA-TTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTTGGG-ATTTTTTAAAA
385 AGACGACTC-ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAAA
*
15671848 GTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
449 -TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
*
15671913 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCC
513 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
15671978 CAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
578 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * **
15672043 GTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGGGCCAATATAATTGCCAAGTACCAGCACCCAT
643 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * ** *
15672108 CACACATCATGAGCGCACA-CCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCGGGTCAG
708 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * * * *
15672172 GTTCT-CGACGATGGTGTCTCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATG
773 GTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCATG
* * * * *
15672236 TGCTGCTGTAACCCTCAGTCCGATCTGATTTTAGACTGGGAATGAACT
837 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
15672284 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTACACCTAAA
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGC-----C------T-AA----G----------
* *
15672349 TCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAACCGGGGA
40 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * * *
15672414 TC-GACTGGGTCCCCCTTTGCATGCTGTCGATCCTGCTGCTGCAACACTCGGTCTGGT-TCGATC
105 TCGGTC-GAGT-CCCCTCTGTATGC--TCGATACTGC--C-GTAACCCTCAGTCCGGTCT-GATC
* * *
15672477 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGGT
162 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGC
* *
15672542 ACTACACCGGCCAGAGGGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
227 ACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
15672607 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATGCAATGGTCCC
292 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
15672672 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTGT-GAAA
357 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT-TCAAAA
* *
15672736 CTTTTTAAGGTTCGGG-ATTTTTT-AAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGA
421 CTTTTTACGGTTCGGGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15672799 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGA
486 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15672864 TTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACTT
551 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15672929 GT---A----AAAT-CTC---AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGTGCCA
616 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15672983 ATATAAGGACCAAGTACCAGCACCCATTGCACATCATGTGCGCGCA-CCCCCCGACCCCCCCGAT
681 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
** * * ** * **
15673047 CATCAGAACCCCATTGCCATCGATCAGGTTCTCCGACGATGGTGTCCCGGTAAAGAAAAATGCGG
746 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATGCGG
*
15673112 CAACAGCACATGCC
811 CACCAGCACATGCC
15673126 TGCGTGGGTT
Statistics
Matches: 8735, Mismatches: 1398, Indels: 1074
0.78 0.12 0.10
Matches are distributed among these distances:
846 2 0.00
847 344 0.04
848 309 0.04
849 1 0.00
850 6 0.00
852 4 0.00
853 2 0.00
855 3 0.00
857 3 0.00
858 11 0.00
859 1 0.00
860 3 0.00
861 295 0.03
862 955 0.11
863 383 0.04
864 432 0.05
865 206 0.02
866 68 0.01
867 7 0.00
869 3 0.00
870 23 0.00
871 6 0.00
872 7 0.00
874 60 0.01
875 4 0.00
876 55 0.01
877 506 0.06
878 161 0.02
879 4 0.00
880 3 0.00
881 7 0.00
882 6 0.00
883 3 0.00
884 4 0.00
885 5 0.00
886 195 0.02
887 769 0.09
888 196 0.02
889 1110 0.13
890 440 0.05
891 191 0.02
892 171 0.02
893 11 0.00
894 6 0.00
896 42 0.00
897 5 0.00
898 3 0.00
900 9 0.00
901 3 0.00
902 126 0.01
903 43 0.00
904 2 0.00
905 4 0.00
906 4 0.00
907 6 0.00
909 2 0.00
910 6 0.00
911 5 0.00
912 13 0.00
913 163 0.02
914 16 0.00
915 298 0.03
916 18 0.00
917 11 0.00
918 2 0.00
919 5 0.00
920 7 0.00
921 7 0.00
922 51 0.01
923 6 0.00
924 7 0.00
925 10 0.00
927 8 0.00
928 5 0.00
929 4 0.00
930 5 0.00
931 1 0.00
932 1 0.00
933 6 0.00
935 3 0.00
936 2 0.00
939 14 0.00
940 45 0.01
943 1 0.00
944 4 0.00
945 8 0.00
946 1 0.00
947 1 0.00
949 10 0.00
950 5 0.00
951 9 0.00
952 9 0.00
953 6 0.00
954 13 0.00
955 5 0.00
956 11 0.00
958 4 0.00
959 6 0.00
960 17 0.00
961 7 0.00
962 16 0.00
963 9 0.00
964 1 0.00
965 1 0.00
966 1 0.00
967 2 0.00
968 7 0.00
970 5 0.00
971 3 0.00
972 6 0.00
974 4 0.00
975 8 0.00
976 6 0.00
977 4 0.00
978 15 0.00
979 18 0.00
980 1 0.00
981 4 0.00
982 3 0.00
983 3 0.00
985 3 0.00
986 3 0.00
987 4 0.00
989 19 0.00
990 16 0.00
991 5 0.00
992 12 0.00
993 1 0.00
994 2 0.00
995 2 0.00
996 3 0.00
997 3 0.00
998 4 0.00
1000 6 0.00
1001 2 0.00
1002 1 0.00
1003 1 0.00
1004 1 0.00
1005 8 0.00
1006 16 0.00
1007 8 0.00
1008 16 0.00
1009 7 0.00
1010 6 0.00
1012 10 0.00
1013 5 0.00
1014 13 0.00
1015 6 0.00
1016 7 0.00
1017 11 0.00
1018 5 0.00
1019 10 0.00
1022 1 0.00
1023 8 0.00
1024 78 0.01
1025 145 0.02
1026 64 0.01
1027 38 0.00
1028 32 0.00
1029 75 0.01
1030 27 0.00
1031 234 0.03
1032 49 0.01
1033 66 0.01
1034 29 0.00
1035 56 0.01
1036 38 0.00
1037 42 0.00
1038 29 0.00
1039 48 0.01
1040 56 0.01
1041 45 0.01
1042 47 0.01
1043 26 0.00
1044 36 0.00
1045 39 0.00
1046 40 0.00
1047 60 0.01
1048 119 0.01
1049 33 0.00
1050 39 0.00
1051 33 0.00
1052 46 0.01
1053 98 0.01
1054 108 0.01
1055 103 0.01
1056 51 0.01
1057 42 0.00
1058 58 0.01
1059 24 0.00
1060 32 0.00
1061 14 0.00
1062 17 0.00
1063 46 0.01
1064 34 0.00
1065 46 0.01
1066 52 0.01
1067 49 0.01
1068 32 0.00
1069 7 0.00
1070 9 0.00
1071 9 0.00
1072 26 0.00
1073 28 0.00
1074 19 0.00
1075 32 0.00
1076 33 0.00
1077 20 0.00
1078 19 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCTCTGTATGCTCG
ATACTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATT
TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCAAGCCCAGCATGTGCTGCCGC
AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
Found at i:15666845 original size:26 final size:26
Alignment explanation
Indices: 15666809--15666861 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666799 CCGGTCCAAT
15666809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15666835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15666861 C
1 C
15666862 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15667445 original size:890 final size:889
Alignment explanation
Indices: 15664181--15681058 Score: 7617
Period size: 890 Copynumber: 18.6 Consensus size: 889
15664171 CCGGTCCAAT
* *
15664181 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
15664246 CGGCCAGAAGGGCGGGATGTGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGTATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
15664311 TACTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
15664376 CCGACGAAATGAGTGGGTGGACAGGCGAGCACTACGCCGACCAAAGTGGCGGGATGCGCAAGCGG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15664441 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCCATGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
15664506 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGATGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * * *
15664571 TCGTTTTCTTTTTTTCATGATTTTCAAAACTTTTTACAGTTCGGAATTTTTTTAAATTTTTTCAG
391 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
** *** * *
15664636 AAAAAGTTTTGTATCCAAACTTGGCAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
15664701 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
15664766 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
15664831 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
15664896 GTGTGCACACGCACCTCGGCCCCCCCGATCGTCGGCACCCCAATGCCGCCGGTCAGGTTCTCCGA
716 GTGCGCACAC-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * *
15664961 CGATGGTGTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGTGCCCAGCATGTGCTGTCGC
780 CGATGGTGTCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
15665026 AACCCTCATTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15665072 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGGGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15665137 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCTCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * ** *
15665202 TGCTGCTACAACCCTTGGTCTGGTCCAATCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
15665267 CCGAC-AAA--A-TGAGCAGGCGGGCGGGCACTACGTCGTCCAGAGAGGCGGGATGTGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
15665328 TGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCGTGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
15665393 TTCAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
15665458 TCATTTTTTATTTTTCACGA-TTTTAAAAATGTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
391 TCGTTTTCTATTTTTCACGATTTTTAAAACT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
*
15665522 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
15665587 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
15665652 ACACTTTAGTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGAGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
15665717 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCTATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ***
15665782 TGTGTGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTTTGTCAGGTTCTCCG
715 TGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
15665847 GCGATGTTGTGT-CGGTGAA-AAAAATGCGGCACCAGCAAATGGCCAAGCCCAACATGTGCTGCC
779 ACGATG--GTGTCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
15665910 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTTTG
842 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15665958 CTTAGACTGGGAATAAACTCTGTATGCCTAAGTTAACCTATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* **
15666023 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCT-T---TG-T---G----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15666076 TGCTGCCGTAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *
15666141 CCGACGAAATTAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* **
15666206 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * **
15666271 TTCTGGCTTATAAATTCGTACAATTTTCCCTTAAGCCTTCATGTGAAGTTT-ATGGCAAGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * **
15666335 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAG
391 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* *
15666400 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
15666465 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
15666530 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTAAAATACTCTTTAAGGGTGTGTGTGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* **
15666595 TCGAGGTTTGATGAGGTATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCGCACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
15666660 CTGCGCACACCCCCCTGGCCCCCCTGAAT-GCCGGAACCACAATGCAGCCGATCAGGTTCTCCGT
716 GTGCGCACACCCCCCCGGCCCCCCCG-ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
*
15666724 CGATGGTGTCCCAGCGAAGAAAAATGCGGCACCACCACATGCCCGAGCCCAGCATGTGCTGCCGC
780 CGATGGTGTCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
15666789 AACCCTCAGGCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
844 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
15666835 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCATCCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15666900 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGAGTCCCTCTCTGTGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * *
15666965 CACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
15667030 CTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACATCGGCTAGAGAGGCGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
***
15667095 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGTGTGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
15667160 TTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * **
15667225 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGAATTTTTAAAAAAATTTT-A
391 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGG-ATTTTTTAAAATTTTTTCA
** *
15667289 GAATTAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
15667354 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15667419 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
15667484 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
15667549 TTTACGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGA
715 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * **** * *
15667614 CGATGGTGTCCCGACGAAGAAAAATGTGGCACCATCACATAATAGAGGCCAGCATGTGCTGCTGC
780 CGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * ***
15667679 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAGGGA-T-AGGGGG
844 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGA---ACTCCGTATG
* * * * * * * * * **** *
15667726 CCAATATA-AGGGCCAA-GTACCAGTACC-CATCGCACATTATGTGCCCACACTTCCCCCGACCC
1 -C-TTAGACTGGG--AATG-A--ACT-CCGTAT-GC-C--TAAGT--CAACCCATGAAACGA-GC
* * *** * ** * *
15667788 CTCCAATCG-TCGGAACC--CCA-ATGTCGCCGGTCAGGTTCTCCGACGATAGTGTTTCGGCGAA
51 GTGCGGGCGCTC--AGCCGGCCAGA-G--G--GG-C-GG-GATGCG-C-A-A--G--CCGG-G--
* ** * * * * * *
15667849 GAAAAATATGGCACTAG--CACATGCT-CGAGC--CCAGCAT-GTGCTACCACAACCCTC-GATC
96 G----AT-CGGC-CGGGTCCCCCT-CTGCGTGCTGCC-G-ATCCTGCTGCCGCAACCCTCAG-TC
* * *
15667907 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTA
151 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G--C-C---A-ACCGA
* * * ** * * * * *
15667972 AGTCAACCCA-CGAAACGAGCGTGCAGG-AGCT-CAGCCGGCCAGAGGGGCGGGATGCGTAAGCC
200 CG--AAACGAGCG-GGCGGGCGGGCGGGCA-CTAC-GCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *** ** * * * * *
15668034 GAGAATTGGCCGGGTCCCCCTCTGCGTGCTGCCAAGCCTGCT-GCCCCAACCTTCAGT-TTGGTC
260 GTGGATCGATAGGGT---GGT-AG-GTG--G----G--T-TTAGGCAC-ATCTTCA-TATT--TC
* ** * * * ** ** ***
15668097 TGATCTTAGACTGGGAATG-AACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGAAGG
307 TG--C---CA-TGCCAATGCCA-TT--T-T-TCT--GGC--TTG-T-AAA--TTCATAC--AA--
* * * * ** * * **** * **
15668161 GGGGGCAC-TACGCCGGCCA-GAGAGGCGGGATGTGCAAG-CTGTGGA-TCGATAGGGTGGTAGG
349 -TGGTCCCTTAAGCC-TTCATGTGAAGTTTCATG-GCAAGAC----GACTCG-T---TTTCTA--
* * * * * ** * ** *** *
15668222 TTGGTTTAGGCAC-A-TCTTCATA-TTTCTGCCATGCCAATGCCATTTTTCT-GGCTTGTAAATT
401 TT--TTT---CACGATTTTTAAAACTTTTTACGGT-TC---GGGATTTTT-TAAAATT-T--TTT
* * ** * * * *
15668283 CATACAATG-GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC--GA--CTTGTTTTCTAT
453 C--AGAAGGAGT---TTTGGCC-CCA----AA----CTTGG-TAGACGTGATCCTTGTATT-T-T
* ** *** * ** * *** * * * ** *
15668343 TTTTTACGATTTTC--AAAACTT--TTTTAAGGTTCGATATTTTTTAAAATTTTTTCAGAATGAG
501 TGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGA-A--GTGTACAAGATTTT--G--TGAC
** ** ** *** * * * ** ** * ** * *
15668404 TTTTTGCCCAAACCTGGTAGACGTGATCCTTGTA-TTTTTGTTGGC-A-TGCACAAAAAATTCAG
558 CATTTG-AAAAAAGT-GTCCCCAT--TTC-AG-ACACTTTAATGGCTACTG-GCAGCAAA-CCTG
* * ** * ** * *
15668466 CTAAAAAT-TCGAAGTG-TACAAGATTT-TGTGGCCATTTGAAAAAAGTT-TCCCTGTTTTAAAC
615 -T-AAAATCTC-AAATGCT-C----TTTAAG-GG-GGTGTG-----AGTTCT-CGAGGTTT---G
* * * ** * * *** * * ****** * ** *
15668527 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
661 A---TGAGGGATA--GGGGGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCAT-CGCACA
* * * * ******* ****** * * * *
15668592 TAAGGTTTGATG-AGAGATAGGAGGCCAATATAATGGCCAAGTACCAGCACCC-AT--CGAAC-A
712 TCA--TGTG-CGCACACCCCCCCGGCCCCCCCGATCGCC--GGA--A-C-CCCAATGCCG-CCGG
* * * *** * ** ** * ** ** * ** * *
15668652 TCAAGTGCGCAC-ACCCCCCGG-CTCCTCTTGATCACCAGAA--CACCAATACCACCGGTCAG-G
767 TCAGGTTCTC-CGA--CGATGGTGTCC-CGCGA--AGAAAAATGCGGCACCAGCACATGCCCGAG
* * ***** * * ** ** *
15668712 TTCTCCAGTGATGGTGC-CCCGGCAAAGAAAAATACGACACCAGCAAATGCCCGAGCCCTGCATG
826 --C-CCAG-CAT-GTGCTGCC-GCAACCCTCAGTCCG-GTCC-G---AT--CTTAG-ACTG---G
** *
15668776 TGCTACCGCAACCCTCGGTCCGATCTG
874 -G--AATG-AA----C--TCCG-TATG
* * * *
15668803 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGTGCTCA
1 --CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
15668868 GCCGGCCAGAGGGGCAGCATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
15668933 CCTGCTGCCACAACCCTCAGTCCGATATGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ***
15668998 AACCGACGAAACGAGCGGGCAGGCAGGCGGGCACTACG-TAACCAGAGAGGCGGGATGCGCAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
*
15669062 CGTGGATCGATA-GGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
15669126 TTTTTTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
324 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
*
15669191 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTT-GGGATTTTTTAAAATTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTT
* * *
15669255 CAAAAGGAGTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
15669320 ATATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
15669385 AAACACTTTAATGCCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
15669450 TTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
15669514 CATGTGCACACACTCCCCCTTAG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
713 CATGTGCGCACAC-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * * * * *
15669578 TCGACGATGGTGACTCGATGAAGAAAAATACGGCAGCAGCACAAGCCTGTGGCCAGCATGTGCTG
776 CCGACGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
15669643 TCGCAA----C---CC--T-CGA---T---C------TG-A-TCCG-AT-
840 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15669667 CTTAGACTGAGAATGAACTCCGAATTCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * *
15669732 CGGCCAGAGGGG-TGGATGCGCAAGTTGGGGATTGTTCGGGTCCCCCTATGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** ** * *
15669796 TGCTGCTGCAACTCTCAATCAAGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * *
15669861 CCGATTAAACGAACGGGCGGGCGGGCGGGCACTACCCCAGCCAGAGAGGAGAGATGTGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
15669926 TGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
15669991 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
*
15670056 TCGTTTTCTATTTTTCACGATTTTTAAATA-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
391 TCGTTTTCTATTTTTCACGATTTTTAAA-ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * ** *
15670120 GAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATACTTGTGGTTTTATTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
15670185 ATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCGATTTCAA
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15670250 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
15670315 CTCGAAGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * * * * *
15670380 TGTGCGCACACCCCCCATG-ACCCCCGATCGTCGAAACCCCAATGCCACCGGTTAGGTTCTCCAA
715 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* ** * * * * *
15670444 TGATGGCATCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACTGT
780 CGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
15670509 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15670555 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15670620 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCAGGTCCCCTTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
15670685 TGCTACCACAACCGTC-GATCAC-GTCCAATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCC
131 TGCTGCCGCAACCCTCAG-TC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
15670748 AACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * *
15670813 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTCATGCCAATGCCAT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * ** *
15670878 TTTTGTGGCTTGAAAATTCATGGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGACG
324 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * * * *
15670943 ACTCGTTTTCTATTTTTTAAGATTTTTGAAACTATTTACGGTTTGGGATTTTTTTAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * **
15671008 AGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAATC
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* **
15671073 AATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTTGCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
15671138 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15671203 TCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
15671268 ATGTCCGAACA-CCCCCTGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCCT
714 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-
* * * * *
15671332 G-CGATGGTGTCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATTTACTGCC
778 GACGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
15671396 GCAA-CC-C-GT---AT--GA-C-TA-A----G--TCAAC-CTGTA--
842 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15671424 --T-GACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
15671486 CAGCCAGA---G-GGGAT--------C---GAT----CGGGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
15671532 TGCTGCCACAACCCT-TGATCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * ** * * * *
15671596 ATGGACGAAATGAGTAGGCGGACGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
15671661 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
15671726 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCACGGCAAGACGA
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * * *
15671791 CCCGATTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAAGTTTTTTC
390 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTC
15671856 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
15671921 AATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCAATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
15671986 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** *
15672051 TCTCAAGGTTTGAGGAGGGATAGGGGGCCAATATAATTGCCAAGTACCAGCACCCATCACACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** *
15672116 ATGAGCGCACA-CCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCGGGTCAGGTTCT-CG
714 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
15672179 ACGATGGTGTCTCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTG
779 ACGATGGTGTC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
15672244 TAACCCTCAGTCCGATCTGATTTTAGACTGGGAATGAACTCCGTATG
843 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
15672291 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTACACCTAAATCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGC-----C------T-AA----G----------TCAACCC
* * * * * *
15672356 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAACCGGGGATCGACTG
40 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
* * * * * * *
15672421 GGTCCCCCTTTGCATGCTGTCGATCCTGCTGCTGCAACACTCGGTCTGGT-TCGATCTTAGACTG
105 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTG
* * *
15672485 GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGGTACTACACC
169 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* *
15672550 GGCCAGAGGGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
234 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
15672615 CATATTTCTGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCT
299 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
15672680 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTGTGAAACTTTTTAAG
364 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACG
*
15672745 GTTCGGGATTTTTT-AAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
429 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
15672809 GTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
494 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
15672874 ATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACTTGT---A----
559 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
15672932 AAAT-CTC---AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGTGCCAATATAAGGAC
624 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * ** *
15672993 CAAGTACCAGCACCCATTGCACATCATGTGCGCGCA-CCCCCCGACCCCCCCGATCATCAGAACC
689 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* ** * *
15673057 CCATTGCCATCGATCAGGTTCTCCGACGATGGTGTCCCG-GTAAAGAAAAATGCGGCAACAGCAC
754 CCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGCG--AAGAAAAATGCGGCACCAGCAC
* ** ** * *** ** * ** * *
15673121 ATG-CC-TG-CGTGGGT-TAACTTAGGCATA--CGGAGTACATTCAC-AGTCTAAG-CATACGGA
817 ATGCCCGAGCCCAGCATGT-GCTGCCGCA-ACCCTCAGTCCGGTC-CGA-TCTTAGAC-T-GGGA
* ** * **
15673178 GTTCATTCCCAAT-
876 ATGAACTCCGTATG
* * * ** * * ** ** * * *
15673191 CTAAGA-TCGG-ATCGGACTGAGGGT-TGGCAACAG-CACATGC-TCGAGCCCAGCATGTGCTGC
1 CTTAGACTGGGAAT-GAACT--CCGTATGCCTA-AGTCA-ACCCAT-GAAACGAGC--GTGCGGG
* ** ** * *** * * ** ** * *
15673251 CG-T-AACC--CTCAGTCCGATC-CGAT-CTTTAGACTGGGAAT--G--GAAT-CCGTTATGCTT
58 CGCTCAGCCGGC-CAG-AGGGGCGGGATGCGCAAG-CCGGGGATCGGCCGGGTCCCCCTCTGCGT
** * ** ** ** * **** **
15673305 AGACTGATGAATGTACTCTGTATGCCTTAAAGC-CAACCCACGAAAAAT-GAAG-CATGCGG---
120 -G-CTGCCG-A--T-C-CTG-CTGCCGCAACCCTCAGTCC-GGTCTGATCTTAGAC-TG-GGAAT
* ** ** ** * ** * * *
15673364 GCACTCCAGTCGGCC-AGAGGGTAAGTG-CGTAA-G-GCCGGG-GATCGGTCGGTCCCCTCACGT
174 GAACTCC-GTATGCCTA-A-GCCAACCGACGAAACGAG-CGGGCGGGCGGGCGG-GCACT-ACG-
* ** * ** * * * * ** * ** * *
15673424 TCCTGCC---GATCCTGCCTGCCCGTAA-CCCT-CAGTCGGTTTTGATCTTTAGACTGGTGAATT
232 -CCGGCCAGAGAGGCGGGATG--CGCAAGCCGTGGA-TC-GATAGGGT-GGTAG-GTGG-G-TTT
** * * **** ** * ** * *
15673484 --G-A-A-C-TCATATGCCT--AAAGCCAA--CCGATGAAAC-GAGCGGGCAGGTGGGCACTACG
288 AGGCACATCTTCATATTTCTGCCATGCCAATGCC-ATTTTTCTG-GCTTGTAAAT--TCA-TACA
** *** * * ** * *
15673538 CCGG--CC--AGAGCGGCGGGATGTGCAAG--CCGTGGAATCGATAGGGGTAGGTGGGTTTAGTC
348 ATGGTCCCTTA-AGC--CTTCATGTG-AAGTTTCATGG---C-A-AGACG-A-CT-CGTTT--TC
** * ** ** ** ** * * * * ** * *
15673597 -ACATTT-A-TATTTCTCCATGCAATTGCCAGTTTCTGG--CTTGT-AAATTCATACAG-TGGTC
399 TATTTTTCACGATTT-TTAAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCAGAAGG--
*** ** * * * * * * *
15673655 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC--GACTCGTTTTCTATTT-TT----T--AC
460 AGTTTTGGCC-CCA----AA----CTTGG-TAGACGTGA-TCCTTGTATTTTTGTTGGCATGCAC
* * * ** * * * * * * *** *
15673711 -----GATT---TTTAAAACTTTTTACG-GTTCAGGATTTTTTTA-AATTTTTTCAGAAGCCTTT
514 AAAAAAATTCAGCTAAAAAC--TCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAG-----
* * *** ** **
15673766 TTGGCCCCAAACTTTTTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAA---AAAAAAT-T
571 -TGTCCCC--A--TTTCAGAC---A--CTT-TAATGGCTACTGGCA-GCA-AACCTGTAAAATCT
*** *** ** * ** * ** **
15673826 C--A-GCT-AAAAACTCGAAGT--GTACAAGA-TTTTG-TGA-CCAT---TTG--AA-A-AAGGT
623 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG-
* ** ** * * * ******** * **
15673875 GTCCCCA-TTTCAGACACTTTAATGGC-TA-C-TG-GCAGCA-A-ACCTGTAAAATCTCAAAT-G
687 G--CCAAGTACCAG-CAC--CCATCGCACATCATGTGC-GCACACCCCCCCGGCCCCCCCGATCG
** ***** * * * * * ***** * * *
15673932 CTCTTTAA-GGGGGTG-TG-AGTTTTCGAGGTT-T--GATGAGGGATAAGGGGCCAA-TATAA-G
746 C-C-GGAACCCCAATGCCGCCG--GTC-AGGTTCTCCGACGATGG-TGTCCCGCGAAGAAAAATG
* * ** * * * * * * *
15673989 -GGC-CAAGTACCGGCACCCATCACA-CATCATG-TG-CGCACACCC-CA-CCCGG-CC--CCCT
805 CGGCACCAGCACATGC-CCGAGCCCAGCAT-GTGCTGCCGCA-ACCCTCAGTCCGGTCCGATCTT
* *** **
15674044 -GA-T-CGCCGGAAC-CCCAATG
867 AGACTGGGAATGAACTCCGTATG
* * ** * * * ****
15674063 C--CG-C-CGG--T---C-AGGT-T--CT---TC-AGCGATG----GTGTCGTGGCGAAGAAAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-CGT-GCG--G-GCGC
* * * ** * * * ** * * *
15674107 TACAG-C-ACC--A-GGAC---ATGCCCAAGCCCAGCA-CGTGCTGCTGTAACCCT-TG-ATCCA
61 T-CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCCG-GGTCCCCCTCTGCGTGCT
* * ** *
15674161 GTCCGATCTTAGACTG--GGAA---T--GAAC--TCTGTATGCTTAGACTGAGAATGAACTCCGT
123 G-CCGATCCT-G-CTGCCGCAACCCTCAGTCCGGTCTG-AT-CTTAGACTGGGAATGAACTCCGT
* * * * * * * *
15674217 ATTCCTAAGTCAACCCACGAAATGAGC--GC--GC--ACGCGCTC-A-GCCGGCCAGAGGGGCGG
183 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * * *** * ** * * * *
15674274 GATGCGTAAGTCGGGGATCGGCCGGATCCCCCTCTGCGTGCTGCTGATCGTACTGCCGCA-ACCC
248 GATGCGCAAGCCGTGGATCGATAGGGT---GGT-AG-GTG--G--G-T-TTA--G--GCACATCT
* * ** * * *** * * ** ** *
15674338 TCAGCTTGGTTTGATCTTAGAC-TGGGAATG-AACTCCCCATGCCTAAGCCAA--CCGACGAAAC
298 TCA---T--ATT--TC-T-GCCATGCCAATGCCATTTTTC-TGGCT-TGTAAATTCATAC--AAT
*** *** ** * * * ** ** ** * * *****
15674399 GAG-CCGC-CGGGCGGGCGGGTG-GGCACTACGCCGGCTCGA-GAGGCGGGTTGC-ACAAGCCAT
350 G-GTCC-CTTAAGCCTTCATGTGAAG--TTTC-ATGGCAAGACGACTC-GTTTTCTATTTTTCA-
* ** * *** *** * * * ** * * * ** * *
15674459 GGA--TCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
408 CGATTTTTAAAACTTTTTA---CGG-TTCGGGATTTTTTAAAATTT-TTTCA-G--AA-G-GA-G
*** ** * * * **
15674522 TTTCTGGCTTGTAAA-TTCATACA-ATGGTCCCTTAAGGCTTCATGTGAAGTTTCATGGCAATAT
462 TTT-TGGC-CCCAAACTTGGTAGACGTGAT-CCTT---G--T-AT-T----TTTGTTGGC---AT
* *** *** * * * ** * * * * **
15674585 GACTCGTTTTCGATTTTTCATGATTTTTGAAACATTTTACG-GTTCGAGATTTT-TTAAAATTTT
510 G-CAC----AAAAAAATTCA-G----CT-AAAAACTCGAAGTGTACAAGATTTTGTGACCA---T
* ** * *** **
15674648 TTCAGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGT-ATTTTTGTTGGCATGC--
561 TTGA-AAAAAG---TGTCCCC--A-TT--TCAGAC---A--CTT-TAATGGCTACTGGCA-GCAA
*** * ** * * ***** * * * * *
15674709 A-CAAAAAAATTCAGCTAAAAACTC--GAAGTGTACAAGAATT-TGTGACCGTTTGA--A--AAA
610 ACCTGTAAAA-TC-TC-AAATGCTCTTTAAGGGGGTGTGAGTTCT-CGA-GGTTTGATGAGGGAT
* ** * * * ** *** * * * * * * * **
15674766 AGTGTCCCAATTTCA--GACACTTTAATGGCTA--C-TGGCAGCAAACCTGT---AAAATCTCAA
670 AGGGGGCCAATATAAGGGCCA-AGTACCAGC-ACCCATCGCA-C-ATCATGTGCGCACACCCCCC
** * **** ** ** ** * ** ** *** ** **
15674823 ATG-CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGG-GGGCC-AATATAAT-
731 CGGCCCCCCCGA-TCGCCG-GA-ACCCCAA----TGCCGCCGG-TCAGGTTCTCCGACGATGGTG
* ** * * * * **
15674883 TGCCAAGTACCAGCACCCATCACACAT-CATG-AGC-GCACATCCCCCGA-CCC-CCCCGAT-CA
788 TCCCGCG-A--AG-A---A--A-A-ATGC-GGCACCAGCACAT-GCCCGAGCCCAGCATG-TGC-
* * * * * * * *
15674942 T--CGGAACCC-CAATGCCGCGGGTCAGGT-TCTCGAC-GATGG--TG-TCTCGGTGAAG
838 TGCCGCAACCCTC-A-GTC-C-GGTCCGATCT-TAGACTG--GGAATGAACTCCGT-ATG
* * * * ** * *** *
15674994 --AAAAATGCGGCACCA-GCACATGCCCG-A-GCCTAGCATGTGC--TGC-TGTAACCCTCAGTC
1 CTTAGACTG-GG-A--ATGAAC-T--CCGTATGCCTA--A-GT-CAACCCATGAAACGAGC-GTG
** * * ** *** * * ** * * * * * *
15675051 CGATCTGATCTTAGACTGGGAATGA-ACTCCGTATGC-TTAGACTGGGAAT-GAACTC-CGTACA
54 CGGGC-G--CTCAG-CCGGCCA-GAGGGGCGGGATGCGCAAG-CCGGGGATCG-GC-CGGGTCCC
* ** * * * * * ** * * *
15675112 CCTAAAT-C-AAC-CCACGAAACAAGCGTGCGGGCGCTCAGCCGGC-CAG-AGGGGCAGGATGCG
111 CCT--CTGCGTGCTGC-CG-ATC---C-TGC-TGC-CGCAACC--CTCAGTCCGGTC-TGAT-CT
* * * * ** *** ** *** * * ** * ** *** *
15675172 CAAACCGGGGATCG-ACTGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTGCTGCAACACTCGGTC
162 TAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAACCGACGAAAC-G-AGC-G-GGCGGGCGG-G
* * ** ** * * *** * *
15675236 CGGTTCGATCTTA-GACTGGGAATGA-ACTCCGTATGC-CTAAGCCAACCGA-CAAAACGAGCG-
221 CGG-GC-A-C-TACG-CCGGCCA-GAGAGGCGGGATGCGC-AAGCC-GTGGATCGATA-G-G-GT
** * ** * ** * **** **
15675296 GGCGGGCGGG--CGGGTACTACACCGGCCAGAGGGGTGGGATGCGCAA-GCCGTGGATCGATAGG
275 GGTAGGTGGGTTTAGG--C-ACATC-TTCATATTTCTGCCATGC-CAATGCC----AT---T---
** * *** * **
15675358 GTGGTAGGTGGGTT-TAGGCACATCTTCATATTTTTGCCGTGCC--AATGCCATTTTTTTGGCTT
325 -T--T-TCTGGCTTGTA---A-A--TTCATA-CAATG--GTCCCTTAA-GCC---TTCAT-G--T
* * **
15675420 GTAAATTCATGCAATGGTCCTTTAAGCCTTCAT-GTGAAGTTTCATGGCAAGACGACTCGTTTTC
370 G-AAGTT--T-C-ATGG--C---AAGACGAC-TCGT----TTTC-T---------A-T--TTTT-
* * * *
15675484 TATTTTTCACGATTTGTGAAACTTTTTAAGGTTCGGGATTTTTT-AAATTTTTTCAGAAGCAGTT
406 -------CACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
*
15675548 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTA
464 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
15675613 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAA
529 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
15675678 TGGCTATTGGCAGCAAACTTGT---A----AAAT-CTC---AAGGGGGTGTGAGTTCTCAAGGTT
594 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
15675732 TGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATTGCACATCATGTGCGCGC
659 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* ** * * ** *
15675797 A-CCCCCCGACCCCCCCGATCATCAGAACCCCATTGCCATCGATCAGGTTCTCCGACGATGGTGT
724 ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGT
* * ** *
15675861 CCCG-GTAAAGAAAAATGCGGCAACAGCACATGCCTGCGTGGGTTAACTTAGGCATACGGAGTAC
789 CCCGCG--AAGAAAAATGCGGCACCAGCACATGCC--C----G--AGCCCA-GCAT-----GTGC
* * * * ** * * * * **
15675925 ATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA-TCGG-ATCGGACTGAGGGT-TG
838 -TGC-C-G-C-AACCCT-C--AGTCCGGT-CCGATCTTAGACTGGGAAT-GAACT--CCGTATG
** ** ** * *
15675986 CAACAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTG
1 C-TTAG-AC-TG---G-G---A--ATGAACT-CCGTATGCCTAAGT-C-AACC---C----A-T-
* ** * *** *
15676051 GGAATGAACTCCGTATGCTTAGACTGTGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGA
42 -G-A--AA---CG-A-GCGT-G-C-G-G---GCGCTCAGCCGGCC--AGA--------G----G-
*** ** * * *
15676116 GCATGCGGGCACTCAGTCGGCCAAAG--GGGTAAGATGCGTAAGCCGGGGATCGGTC-GGGTCCC
76 G---GCGGG-A-T--G-C-G-C-AAGCCGGG---GAT-CG---GCCGGGTCCCCCTCTGCGTGCT
* * * * *
15676178 CCTCCA-CGTGCTGCCGATCTTGCTGCCGTAACCCTCAGTTCGGTTTGATCTTAGACTGGGAATG
123 GC-CGATCCTGCTGCCG----------C--AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
* * * * * *
15676242 AACTCCATATGCCTAAGCCAACCGATGAAACGA----ACGGGCAGGTGGGCACTATGCCGGCCAG
175 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
*
15676303 AGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
240 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
15676368 TCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGT
305 TCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* *
15676433 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTAAAACTTTTTACGGTTCAG
370 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGG
* *** **
15676498 GATTTTTTAAAATTTTTTTAGAAGCCTTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTT
435 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
15676563 TTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTG
500 TTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
15676628 AAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
564 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
15676693 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
629 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
15676758 ACCAGCACCCATCACACATCATGTGCGCACACCCCACCCGG-CCCCCCGGTCGCCGGAACCCCAA
694 ACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAA
* ** ** * * * *
15676822 TACCGCCGGTCAGGTTCT-TTAGCGATGGTGTCGTGGTGAAGAAAAATACAGCACCAGGACATGC
758 TGCCGCCGGTCAGGTTCTCCGA-CGATGGTGTC-CCGCGAAGAAAAATGCGGCACCAGCACATGC
* * * * * * *
15676886 CCAAGCCCAGCACGTGCTGCTGTAACCCT-TGATCCAGTCCGATCTTAGACTGGGAATGAACTCT
821 CCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCC
15676950 GTATG
885 GTATG
* * * * ** **
15676955 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCACGCACGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
15677020 CGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGGCCGGATCCCCCTCTGCGTACTGCTGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15677085 TACTGCCGCAACCCTCAG-CCTGGTTTGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
15677149 ACCGACGAAACGAGCGGACGGGCAGGCGGGCGGGCGGGCACTACGCCGGCTC-GAGAGGCGGGTT
195 ACCGACGAAACGA---G-C--G--GGCGGGCGGGCGGGCACTACGCCGGC-CAGAGAGGCGGGAT
* * *
15677213 GCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
251 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
15677278 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCATGTGAAGTTTCATG
316 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * ** * *
15677343 GCAATATGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTACGGTTCGAGATTTTTTAAA
381 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAA
15677408 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
446 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
15677473 CATAAAACAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGAGTCC
511 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
15677538 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG
576 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
15677603 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAC
641 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
15677668 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
706 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * * * * *
15677733 GTTCTCCGACGATGGTGTCCTGACGAAGAAAAATACGGCACCAACACATACCCGAGCCTAGCATT
771 GTTCTCCGACGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
15677798 TACTGCTGCGACCCTCGGTCCAGTTCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGG
835 TGCTGCCGC-AACC-C--T-CA----G-TC-----C---G---G---TCCG-AT-CTTAGACTGG
*
15677863 GAATGAACTCCTTATG
874 GAATGAACTCCGTATG
* *
15677879 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCAG-TCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC-GCTCAG
* * * * * * * * *
15677943 CCGGCCAGAGTGGCGGGATTTCTCAAGCCGGGGAACGGTCGGGTCCCTCTCTGCATGCAGTCGAT
65 CCGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
15678008 CCTGTTACAGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * * * * *
15678073 AACCGACGAAACGAGCGGGCAGGCCGACGGGCACTATGTTGGCTAGAAAGGTGGGATTCACAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* *
15678138 CGTGGATCGATA-GGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
15678202 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
324 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
15678267 ACTCATTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
15678332 AG-AGAGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCGTGCACAAAA
454 AGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
15678396 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAGAAAA-TATCCCCATTT
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTT
* * *
15678460 CAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCT-AGAATGCTCTTGAAGGGGGTGTG
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA-AATGCTCTTTAAGGGGGTGTG
* * **
15678524 AGTTCTCGACGTTTGATGAGGGATA-GGGGCAAATATAAGGGGTAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** *
15678588 ATAATGTGCGCACA-CCCCCCGGCCCCCCCCGATCGTCGAAACCATAATGCCGTCGGTCAGGTTC
711 ATCATGTGCGCACACCCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** *
15678652 TCCGGCGATGGTGTCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCT
775 TCCGACGATGGTGTCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * *
15678717 ATCGCAACCCTCAATCCGGTCCGATCTTCGACTGGGAATGAACTCCGTATG
839 GCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15678768 CTTAGACTGTGAATGAACTCCGTATGCCTAACTCAACCCATGAAACAAGCGTGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
15678833 CGGCCAGGGGGGCGGGATGCGGAAGCCGGGGATCGACCGGGTCCTCCC-CTGCGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC-CCCTCTGCGTGCTGCCGATC
* * * * * * * * *
15678897 CTGCTACTGTAACCCCCAGTCCAGTCTAATCTTAGACTGAGAATGAACTCTGCATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** ** * * * * * * *
15678962 GTCGATTAAACGAGCAGACGAGCGGGCGGGCACTACGTCGGCCATAAAGGCGGGATGCGCAAGCT
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
15679027 GTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCCATGCTAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
15679092 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGA
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
*
15679157 CTCGTTTTCTATTTTTCACGATTTTTTAAAA-TTTTTAAGGTTCGGGATTTTTTAAAATTTTTTC
390 CTCGTTTTCTATTTTTCACGA-TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
15679221 AGAAAGAGTTTTGGCCCCAAACTTGGTATATGTGATCCTTGTATTTTTGTAGGCTTGCACAAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
15679286 AATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAATGTATCCCCATTCCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15679351 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15679416 TCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * * * * *
15679481 ATGTGCGCACACCACCCCC-AACCCCCCAATCACCGAAACCCCAATACCGTCGGTCAGGTTCTCT
714 ATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
15679545 GGCAATGGTGTCCCGACGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCAGTATGTGCTGCC
778 GACGATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * *
15679610 GCAACCTTTGGTCCAGTCCCATCTTAGACTGGGAATGAACTCCGTATG
842 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15679658 CTTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCACGAAATGAGGGTGCAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15679723 TGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGATCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
15679788 TGTTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15679853 TCGACGAAACGAGCGGGCGGGAGGGCGGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCTG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* *
15679918 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCCGTGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * *
15679983 TTCTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTAAAATTTCATGGCAAGACGAC
326 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
*
15680048 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
391 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * * *
15680113 AAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCCTGTACAAAATAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
15680178 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAAGCATTTGAATAAAGTATCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
15680243 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
15680308 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * * * *
15680373 GTGCGTACACCCCCCCGGCCGCCTTGATCGTCGGAACCCCAATGTCGTCGGTCAAGTTTTTCGAC
716 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
15680438 GATGGTATCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGATCCCAGCATGTGCTGCCGCA
781 GATGGTGTCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
15680503 ACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
845 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15680548 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCC-TCAAAATGAGCGTGGGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT-GAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15680612 CCGACCA-AGGGGGCTGGATGTGCAAGCTGAGGATCGACTGGGTCCCCCTCTGTGTGCTGCCGAT
65 CCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
** * * * **
15680676 CCTGCTGTTGTAACCCTC-GATCTGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * *
15680740 CAACCGACGAAACGAGCAGGCGGGTGGGTAGGCACTACACCGGCCAGAGAGGCAGGATGCGCAAG
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
15680805 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
15680870 TTTTTCTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
323 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * * * *
15680935 GACTCATTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTCTATAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
15681000 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
453 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
15681059 CTCAAATGCT
Statistics
Matches: 12030, Mismatches: 2689, Indels: 2537
0.70 0.16 0.15
Matches are distributed among these distances:
833 5 0.00
834 9 0.00
835 4 0.00
836 9 0.00
837 3 0.00
838 2 0.00
839 3 0.00
840 5 0.00
841 3 0.00
842 9 0.00
843 10 0.00
844 9 0.00
845 1 0.00
846 4 0.00
847 361 0.03
848 313 0.03
849 10 0.00
850 11 0.00
851 10 0.00
852 2 0.00
853 10 0.00
854 9 0.00
855 13 0.00
856 11 0.00
857 11 0.00
858 7 0.00
859 7 0.00
860 14 0.00
861 132 0.01
862 213 0.02
863 375 0.03
864 57 0.00
865 8 0.00
866 67 0.01
867 5 0.00
868 4 0.00
869 13 0.00
870 30 0.00
871 25 0.00
872 21 0.00
873 19 0.00
874 121 0.01
875 58 0.00
876 78 0.01
877 531 0.04
878 177 0.01
879 25 0.00
880 25 0.00
881 30 0.00
882 19 0.00
883 9 0.00
884 20 0.00
885 29 0.00
886 205 0.02
887 582 0.05
888 245 0.02
889 1381 0.11
890 1868 0.16
891 204 0.02
892 18 0.00
893 12 0.00
894 15 0.00
895 69 0.01
896 45 0.00
897 20 0.00
898 307 0.03
899 308 0.03
900 36 0.00
901 25 0.00
902 148 0.01
903 47 0.00
904 16 0.00
905 14 0.00
906 14 0.00
907 4 0.00
908 7 0.00
909 5 0.00
910 10 0.00
911 14 0.00
912 13 0.00
913 166 0.01
914 27 0.00
915 452 0.04
916 383 0.03
917 63 0.01
918 2 0.00
919 9 0.00
920 12 0.00
921 18 0.00
922 60 0.00
923 14 0.00
924 101 0.01
925 107 0.01
926 2 0.00
927 9 0.00
928 6 0.00
929 11 0.00
930 9 0.00
931 3 0.00
932 1 0.00
933 7 0.00
934 4 0.00
935 1 0.00
936 3 0.00
937 2 0.00
938 5 0.00
939 13 0.00
940 49 0.00
941 3 0.00
943 1 0.00
944 5 0.00
945 9 0.00
946 3 0.00
947 2 0.00
949 10 0.00
950 5 0.00
951 12 0.00
952 10 0.00
953 9 0.00
954 20 0.00
955 8 0.00
956 21 0.00
957 5 0.00
958 4 0.00
959 9 0.00
960 16 0.00
961 16 0.00
962 28 0.00
963 12 0.00
964 2 0.00
965 2 0.00
966 5 0.00
967 8 0.00
968 17 0.00
969 21 0.00
970 17 0.00
971 6 0.00
972 6 0.00
973 11 0.00
974 23 0.00
975 24 0.00
976 41 0.00
977 23 0.00
978 68 0.01
979 90 0.01
980 105 0.01
981 10 0.00
982 7 0.00
983 15 0.00
984 20 0.00
985 4 0.00
986 9 0.00
987 12 0.00
988 8 0.00
989 29 0.00
990 30 0.00
991 95 0.01
992 87 0.01
993 29 0.00
994 12 0.00
995 10 0.00
996 8 0.00
997 9 0.00
998 12 0.00
999 18 0.00
1000 13 0.00
1001 9 0.00
1002 8 0.00
1003 14 0.00
1004 9 0.00
1005 8 0.00
1006 19 0.00
1007 9 0.00
1008 22 0.00
1009 13 0.00
1010 7 0.00
1012 22 0.00
1013 10 0.00
1014 14 0.00
1015 7 0.00
1016 11 0.00
1017 15 0.00
1018 10 0.00
1019 13 0.00
1020 6 0.00
1021 7 0.00
1022 5 0.00
1023 23 0.00
1024 92 0.01
1025 152 0.01
1026 71 0.01
1027 43 0.00
1028 36 0.00
1029 113 0.01
1030 44 0.00
1031 243 0.02
1032 62 0.01
1033 70 0.01
1034 31 0.00
1035 64 0.01
1036 45 0.00
1037 48 0.00
1038 29 0.00
1039 57 0.00
1040 75 0.01
1041 51 0.00
1042 58 0.00
1043 34 0.00
1044 59 0.00
1045 47 0.00
1046 50 0.00
1047 74 0.01
1048 189 0.02
1049 44 0.00
1050 40 0.00
1051 50 0.00
1052 62 0.01
1053 108 0.01
1054 125 0.01
1055 114 0.01
1056 65 0.01
1057 69 0.01
1058 66 0.01
1059 30 0.00
1060 33 0.00
1061 19 0.00
1062 18 0.00
1063 50 0.00
1064 39 0.00
1065 46 0.00
1066 56 0.00
1067 54 0.00
1068 47 0.00
1069 8 0.00
1070 15 0.00
1071 10 0.00
1072 27 0.00
1073 32 0.00
1074 23 0.00
1075 33 0.00
1076 37 0.00
1077 25 0.00
1078 23 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGGTGTCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15667885 original size:217 final size:216
Alignment explanation
Indices: 15667495--15667931 Score: 604
Period size: 217 Copynumber: 2.0 Consensus size: 216
15667485 TCGAGGTTTG
* *
15667495 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTACGCACAC
1 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACCCACAC
* * *
15667560 CCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGTCC
66 CCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATAGTGTCC
* * * * ** *
15667625 CGACGAAGAAAAATGTGGCACCATCACATAATAGAGGCCAGCATGTGCTGCTGCAACCCTCGGTC
131 CGACGAAGAAAAATATGGCACCAGCACATAATAGAGCCCAGCATGTGCTACCACAACCCTCGATC
15667690 CGGTCCGATCTTAGACTGGGA
196 CGGTCCGATCTTAGACTGGGA
* * * *
15667711 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATTATGTGCCCACAC
1 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACCCACAC
* * * * * * *
15667776 TTCCCCCGACCCCTCCAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATAGTGTT
66 -CCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATAGTGTC
* * * ** *
15667841 TCGGCGAAGAAAAATATGGCACTAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGAT
130 CCGACGAAGAAAAATATGGCACCAGCACATAATAGAGCCCAGCATGTGCTACCACAACCCTCGAT
15667906 CCGGTCCGATCTTAGACTGGGA
195 CCGGTCCGATCTTAGACTGGGA
15667928 ATGA
1 ATGA
15667932 ACTCCGTATG
Statistics
Matches: 191, Mismatches: 29, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
216 59 0.31
217 132 0.69
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (216 bp):
ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACCCACAC
CCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATAGTGTCC
CGACGAAGAAAAATATGGCACCAGCACATAATAGAGCCCAGCATGTGCTACCACAACCCTCGATC
CGGTCCGATCTTAGACTGGGA
Found at i:15667945 original size:26 final size:26
Alignment explanation
Indices: 15667916--15667968 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667906 CCGGTCCGAT
*
15667916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15667942 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15667968 C
1 C
15667969 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15670565 original size:26 final size:26
Alignment explanation
Indices: 15670529--15670581 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15670519 CTGGTCTGAT
*
15670529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15670555 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15670581 C
1 C
15670582 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15672295 original size:26 final size:26
Alignment explanation
Indices: 15672266--15672336 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
15672256 CGATCTGATT
15672266 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15672292 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15672318 TTAGACTGGGAATGAACTC
1 TTAGACTGGGAATGAACTC
15672337 TGTACACCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15673179 original size:26 final size:26
Alignment explanation
Indices: 15673143--15673195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673133 GTTAACTTAG
*
15673143 GCATACGGAGTACATTCACAGTCTAA
1 GCATACGGAGTACATTCACAATCTAA
* *
15673169 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTACATTCACAATCTAA
15673195 G
1 G
15673196 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCACAATCTAA
Found at i:15674207 original size:26 final size:26
Alignment explanation
Indices: 15674168--15674218 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15674158 CCAGTCCGAT
* *
15674168 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15674194 CTTAGACTGAGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
15674219 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15675089 original size:26 final size:26
Alignment explanation
Indices: 15675060--15675109 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15675050 CCGATCTGAT
15675060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15675086 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15675110 CACCTAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15675948 original size:26 final size:26
Alignment explanation
Indices: 15675912--15675964 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15675902 GTTAACTTAG
*
15675912 GCATACGGAGTACATTCACAGTCTAA
1 GCATACGGAGTACATTCACAATCTAA
* *
15675938 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTACATTCACAATCTAA
15675964 G
1 G
15675965 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCACAATCTAA
Found at i:15676071 original size:26 final size:26
Alignment explanation
Indices: 15676042--15676094 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676032 CCGATCCGAT
15676042 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
15676068 CTTAGACTGTGAATGTACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15676094 C
1 C
15676095 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15676968 original size:26 final size:26
Alignment explanation
Indices: 15676929--15676981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676919 CCAGTCCGAT
*
15676929 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
15676955 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
15676981 C
1 C
15676982 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:15677856 original size:26 final size:26
Alignment explanation
Indices: 15677827--15677905 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15677817 CCAGTTCGAT
* *
15677827 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15677853 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15677879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15677905 C
1 C
15677906 CTAAGTCGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15679668 original size:26 final size:26
Alignment explanation
Indices: 15679632--15679684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15679622 CCAGTCCCAT
15679632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15679658 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15679684 C
1 C
15679685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15680558 original size:26 final size:26
Alignment explanation
Indices: 15680522--15680573 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680512 CCGATCCGAT
15680522 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15680548 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15680574 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15682897 original size:26 final size:26
Alignment explanation
Indices: 15682861--15682913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15682851 CTGGTCTGAT
15682861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15682887 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15682913 C
1 C
15682914 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15683739 original size:26 final size:26
Alignment explanation
Indices: 15683688--15683740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683678 CCAGTCCGAT
* *
15683688 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15683714 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15683740 C
1 C
15683741 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15683845 original size:33 final size:33
Alignment explanation
Indices: 15683790--15683855 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
15683780 GACCAGAGGG
* * * *
15683790 GGGGATCGACCAGGTCCTCCTCTGCGTGCTGCC
1 GGGGATCGACCAGGACCCCCTCTACATGCTGCC
**
15683823 GGGGATCGACTGGGACCCCCTCTACATGCTGCC
1 GGGGATCGACCAGGACCCCCTCTACATGCTGCC
15683856 CAAGATTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.12, C:0.36, G:0.32, T:0.20
Consensus pattern (33 bp):
GGGGATCGACCAGGACCCCCTCTACATGCTGCC
Found at i:15684309 original size:26 final size:26
Alignment explanation
Indices: 15684280--15684332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15684270 CCGGTCCTAT
* *
15684280 CTTAGTCTGGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
15684306 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
15684332 C
1 C
15684333 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:15685222 original size:26 final size:26
Alignment explanation
Indices: 15685171--15685223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15685161 CCGGTCTGAT
* *
15685171 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
15685197 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
15685223 C
1 C
15685224 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:15685731 original size:888 final size:885
Alignment explanation
Indices: 15683859--15686375 Score: 3663
Period size: 888 Copynumber: 2.8 Consensus size: 885
15683849 TGCTGCCCAA
* * * *
15683859 GATTTTTTAAAATTCTTTCAGAAGGAGTATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
15683924 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
15683989 AAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* ** * *
15684054 TCTTTCAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGTCAAGT-
195 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
15684118 ----A--C-TTGCATATCATGTGCGTACGCCCTCCCGGCCCCCCCGATCATCGAAACCCCAATGC
260 CAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* * * * *
15684176 CTCAGGTCAAGTTCTCCGGCAATGGTGTCCCGACGAAGAAAAATGTGGTACCAGCACATGCCCGA
324 CACCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * * * *
15684241 GCCAAGCATGTACTGCCGTAACCCTCGGTCCGGTCCT-ATCTTAGTCTGGGAATGAAATCCGTAT
389 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTTCGTAT
* * *
15684305 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
453 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
15684370 CCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCTCTTTGCATGCTGCCAATC
518 -CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATC
* * * *
15684435 TTGCTGCTGCAACCCT-CAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATACGTAAGCC
582 CTGCTGCTGCAACCCTCCA-TCAG-TCAAATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCC
* * * * *
15684499 AATCGATGAATCGAGCGGGTGGGGGGTGGGCGGGCACTACGTCGGTCGGAGAGGTGGGATGCGCA
645 AATCGATGAAACGAGCGGGT---GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCA
** * * *
15684564 AGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTCGCGCTAATGC
707 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCACGCCAATGC
* *
15684629 CATTTTTCTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAG
772 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAG
*
15684694 ACGACTCATTTTCTATTTTTCACCATTTTTGAAACCTTTTACGGTTCGG
837 ACAACTCATTTTCTATTTTTCACCATTTTTGAAACCTTTTACGGTTCGG
** * * *
15684743 GATTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTATTAGATGGGATGCTTGTATTT
1 GATTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
15684808 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
15684873 AAAAGTTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
15684938 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTA
195 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
15685003 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCTCCGATCGCCGGAACCCCAATTC
260 -CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* **
15685067 CACCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCTTGA
324 CACCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* *
15685132 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATG
389 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
*
15685197 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
454 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG-
* * * * * *
15685262 CGACCAAAGGGGCGGGATGCACAAACCGGGGATCGGTAGGGTCCCCCTCTGCATGCTGCCGACCC
518 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCC
* * **
15685327 TGCTGCTGCAATCGTCCATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAA
583 TGCTGCTGCAACCCTCCAT-CAGTCAAATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAA
* *
15685392 TCGATGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGCCG
647 TCGATGAAACGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * *
15685457 TGGATCGATAGGGTGGTAGGTGCGTTTAGGCT-CATCTTCATATTTTTGCCATGCCAATGCTATT
712 TGGATCGATAGGGTGGTAGGTGGGTTTAGG-TACATCTTCATATTTCTGCCACGCCAATGCCATT
*
15685521 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
776 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACAA
* ** *
15685586 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
841 CTCATTTTCTATTTTTCACCATTTTTGAAACCTTTTACGGTTCGG
* * *
15685631 GATTTTTTTAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
15685696 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
* *
15685761 AAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGC
130 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
15685826 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
195 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
15685891 GCAGCACCCATCGCACATCATCTGCGCATACCCCCCGGCCACCCCCGATCGTCGGAAACCCAATG
260 -CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCCGATCGTCGGAACCCCAATG
* *
15685956 CCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATATGGCACCAGCACATGCCCG
323 CCACCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* * * *
15686021 AGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAACTTCGTAT
388 AGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
* * *
15686086 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCTTACGGGTGCTCAG
453 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * **
15686151 CCAGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATC
518 CGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATC
* * * * *
15686216 CTGCTGATACAACCCTCGATTCAGTCAAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
582 CTGCTGCTGCAACCCTCCA-TCAGTCAAATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCA
* * * * * *
15686281 ACCGACGGAACGAGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCC
646 ATCGATGAAACGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
15686346 GTGGATCGATAGGGTGGTAGGTGGGTTTAG
711 GTGGATCGATAGGGTGGTAGGTGGGTTTAG
15686376 CTGAATGTTT
Statistics
Matches: 1460, Mismatches: 154, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
883 1 0.00
884 239 0.16
888 471 0.32
889 10 0.01
890 394 0.27
891 316 0.22
892 10 0.01
893 19 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (885 bp):
GATTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCA
CCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCGA
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGC
TGCTGCAACCCTCCATCAGTCAAATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAATCGA
TGAAACGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCACGCCAATGCCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACAACTCAT
TTTCTATTTTTCACCATTTTTGAAACCTTTTACGGTTCGG
Found at i:15686097 original size:26 final size:26
Alignment explanation
Indices: 15686061--15686113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15686051 CTGGTCCGAT
* *
15686061 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15686087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15686113 C
1 C
15686114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15687726 original size:26 final size:26
Alignment explanation
Indices: 15687690--15687742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15687680 CCGATCTGAT
* *
15687690 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15687716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15687742 C
1 C
15687743 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15688490 original size:890 final size:886
Alignment explanation
Indices: 15686704--15689749 Score: 3928
Period size: 864 Copynumber: 3.5 Consensus size: 886
15686694 TCGTTTCGTC
* ** * * *
15686704 AGGTTCTCCAACGATGGTGTCCTGACGAAGAAAAATAC-AGCACCAGCACATTCTCGAGCCTAGC
1 AGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGC
* ** * *
15686768 ATGTGCTACCGTAACCTTCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTAAGA
65 ATGTGCTGCCACAACCCT-GGTCCGA-TCTGATCTTAGACTGGGAATGAACTC-GTATGCTTAGA
* * ** * * *
15686832 CTGGGAATGAACACCGCATGTTTAAGTCAACCCACGAAACGAGCGTGTGGGTGCCCAGCC-TGCC
127 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGT-CC
* * * * *
15686896 AAATGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTG
191 AGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCTATCCTACTG
* * ** * * *
15686961 CCGCAGCCATCGGTCCGGTCCAATCTTAGACTTGGAATGAACTCTGTATGCCTCAGCCAACCGAC
256 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
** * *
15687026 GAAACGAGCGGGCGGACGGGCGTGCACTACGCCGGCCAGAGAGGCGGGATGTGCAA-CTCGTGGA
321 GAAACGAGCGGGCGGACGGAAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC-CGTGGA
* * * * * *
15687090 TCGATAGGGTGGTAGGTAGGTTTTAGCACATCTGCATATTTCTATCGTGCCAATGCCATTTTTTT
385 TCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
* *
15687155 GGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCGT
450 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
15687220 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTAAAA-TTTTTCAGAAGG
515 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGG
* * * * *
15687284 AATTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
580 AGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
15687349 GCTAAAAACTCGAAGTGTACTAGATTTTGGGACCATTTGAGAAAAGTGTCCCCATTTCACACACT
645 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
15687414 TTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGAGATATGAGTTCTCGA
710 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGA-GTGAGTTCTC-A
15687479 GGTTTGAT-AAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTG
773 GGTTTGATGAA-GGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** *
15687543 CACACACCCCCCCGGCACCCCCCGATCATCGAAACCTAAACGCCGCCGGTA
837 CGCACACCCCTCCGGC-CCCCACGATCGTCGAAACCCCAATGCCGCCGGTA
* *
15687594 AGGTTCTCCGACGATGGTGTCTCAACGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCA
1 AGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
** *
15687659 TGTGCTGCCGTAACCCTGGGTCCGATCTGATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACT
66 TGTGCTGCCACAACCCT-GGTCCGATCTGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACT
* * *
15687724 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCACTCAGCCGTCCAGA
129 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGA
* * * * * *
15687789 GGGGCGGGATGCGCAAGTCGAGGATCGGTTGGGTCCCCTTCTGCGTGCTGTCTATCCTGCTGCCG
194 GGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCTATCCTACTGCCG
* * *
15687854 CAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAA
259 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
**
15687919 ACGAGCGGGCAGG-CGGAAGGGCACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
324 ACGAGCGGGC-GGACGGAAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
15687983 ATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGC
388 ATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGC
15688048 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
453 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* **
15688113 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTTC-AGATTTTTTAAAATTTTTTCAGAAGTTG
518 CTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCAAGATTTTTTAAAATTTTTTCAGAAGGAG
* * *
15688177 TTTTGGCCCCAAATTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGT
582 TTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
15688242 TAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTT
647 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
15688307 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCATGG
712 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGAGTGAGTTCTCA-GG
* ** *
15688372 TTTGATGAAGGATAAGGGGCCAATATATGGGCCAAGTTTCAGCACCCATCGGACATCATGTGCGC
775 TTTGATGAAGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
15688437 ACACCCCTCCGGCCCCCACGATCGTCGGAACCCCAATGCCACCGGTT
840 ACACCCCTCCGGCCCCCACGATCGTCGAAACCCCAATGCCGCCGGTA
* * * *
15688484 AGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGTA
1 AGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
15688549 TGTGCTGCCACAACCC---T-CG----G----T---CT-GG--T---CT-G-AT-CTTAGACTGG
66 TGTGCTGCCACAACCCTGGTCCGATCTGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGG
* * * * * *
15688590 GAATGAACTCCGTATGCCTAAGTTAACCTATGAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGG
131 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGAGG
* * * * *
15688655 GGCGGGATGCGCAAGCC-AGGGATCGATTGGGTCCCCCTCTGCATGCTGT-TGATCCTGCTACCG
196 GGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTACGTGCTGTCT-ATCCTACTGCCG
*** * *
15688718 CAACCCTCGGTCTAATCGGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
259 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
15688783 ACGAGAGGGCGGGCAGGCA-GGCACTACACCGGCCAAAGAGGCGGGATGCGTAAGCCGTGGATCG
324 ACGAGCGGGCGGAC-GGAAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
** * * * **
15688847 ATAGAATGGTAGGTGGGTTTATGCACATCATCATATTTCTGCCATGCCAATGCCATTTTTCTTTC
388 ATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGC
*
15688912 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
453 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
15688977 CTATTTTTCACGATTTCTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCCAGAAGGAGT
518 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGT
* *
15689042 TTT-GCCCCAAAACTTGG-AAGAAATGATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAG
583 TTTGGCCCC-AAACTTGGTAA-ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15689105 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
646 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15689170 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAG
711 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGAGTGAGTTCTC-AG
*
15689235 GTTTGATG-AGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
774 GTTTGATGAAG-GATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
15689299 GCACAACCCCT--GGCCCCCCACGATCGCCAAAACCCCAATGTCGCCGGTC
838 GCAC-ACCCCTCCGG-CCCCCACGATCGTCGAAACCCCAATGCCGCCGGTA
* ** * * *
15689348 AGGTTCTCCGACGAT-TTGTCCCAGTGAAAAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCA
1 AGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
*
15689412 TGTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCTTAGACT
66 TGTGCTGCCACAACCC-TGGTCCGATCTGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACT
** * *
15689477 GGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAAAACGAGCGTACGGGCGCTCAGTCGGT-C
129 GGGAATGAACTCCGTATGCCTAAGTCAACCCA--CGAAACGAGCGTGCGGGCGCTCAG-CCGTCC
* * ** * * * * *
15689541 AGAGGGGCGGGATGCGCAAGCCGGGGATAGGCCGGATCCCACTCTACGTGCTATCGATCCTACCG
191 AGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCTATCCTACTG
* * * * *
15689606 TCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGAC
256 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
15689671 GAAATGAGCGGGCGGAC-GAGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGCA
321 GAAACGAGCGGGCGGACGGA-AGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
15689735 TCGATAGGGTGGTAG
385 TCGATAGGGTGGTAG
15689750 ACGTGATCCT
Statistics
Matches: 1879, Mismatches: 221, Indels: 111
0.85 0.10 0.05
Matches are distributed among these distances:
863 75 0.04
864 677 0.36
865 13 0.01
866 1 0.00
867 2 0.00
868 3 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 2 0.00
876 1 0.00
877 1 0.00
879 2 0.00
880 2 0.00
881 1 0.00
882 1 0.00
885 4 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 39 0.02
890 590 0.31
891 451 0.24
892 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
AGGTTCTCCGACGATGGTGTCCCAACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCACAACCCTGGTCCGATCTGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGAGG
GGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCTATCCTACTGCCGCA
ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGGACGGAAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGAGTGAGTTCTCAGGTTTGAT
GAAGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CTCCGGCCCCCACGATCGTCGAAACCCCAATGCCGCCGGTA
Found at i:15689479 original size:26 final size:26
Alignment explanation
Indices: 15689443--15689495 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15689433 CCGGTCTGAT
15689443 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
15689469 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15689495 C
1 C
15689496 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15691043 original size:26 final size:26
Alignment explanation
Indices: 15691007--15691059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15690997 CCGGTCCAAT
*
15691007 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15691033 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15691059 C
1 C
15691060 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15691924 original size:26 final size:26
Alignment explanation
Indices: 15691895--15691947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691885 CCGGTCCAAT
15691895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15691921 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15691947 C
1 C
15691948 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15692688 original size:890 final size:888
Alignment explanation
Indices: 15689744--15692811 Score: 4280
Period size: 890 Copynumber: 3.5 Consensus size: 888
15689734 ATCGATAGGG
15689744 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCTCGAAGT
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGT
*
15689809 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15689874 GTAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
15689939 GGGGTCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCCGGCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * * *
15690004 CCCACGATCGTCGTAACCAC-AATGTCGTCGGTCAGGTTCTCC-GAGATGGTGTCCCGACGAAGA
260 CCCCCGATCGTCGGAACC-CTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGA
* * *
15690067 AAA-ATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGA
324 AAATATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAA
** ** *
15690131 TCTTAGGTTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACC
389 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
** * *
15690196 CACGAAACGAGCGTGCGGGCACTCAGTCGGCCAAAGGTACAGGATGCGCAAGCCGGGGATCGATC
454 CACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGTGCAGGATGCGCAAGCCGGGGATCGATC
* * * * *
15690261 GGGTCCCCCTCG-GTG-TGC-TGCC-G-T---AGCCCTCGGTCTGGTCTGTTCTAAGACTGAGAA
519 GGGTCCCCCTCGCGTGCTGCAT-CCTGCTGCAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * * * * *
15690318 TGAACTCCGTATGCCTAAGCCAAC--CGATGAA-ATGTGCAGGCGGGCGGGTGGGCACTACGCCG
583 TGAACTCCGTATGCCTAAGCCAACGACGA-AAAGAAGGGCGGGCGGGCGGGCGGGCACTACGTCG
* * * *
15690380 ACTAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTC
647 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
15690445 ATATTTCTA-CCGTGCCAATGCCATTTTTCTGGCTTGTAAATCCATACAATGGTCCCTTAAGCCT
712 ATATTTC-AGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * **
15690509 TCATGTGAAGTTTCACGGCAAGATGACTCGTTTCCTATTTTTCCCGATTTTTGAAACTTTTTACG
776 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
15690574 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAAT
841 ATTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
* * *
15690622 TGGT--A-GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGCGAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
15690684 TACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGTAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15690749 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
15690814 GGTGCCAATATGAGGGCCAAGTACCAGCACACATCGCACATCATGTGTGCACA-CCCCCCGGCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CC
* * * * * * *
15690878 CCCCCGTTCGCCGGAACCTTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCTCGGC-AAAAA
260 CCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAA
* * * * * *
15690942 AAAATGAGGCACCAGCACATACTTGAGCCCAGCATGTGCTACCGCAACACTCGGTCCGGTCCAAT
325 AATATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* *
15691007 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCC
390 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * **
15691072 ACGAAACAAGCGTGCGGCTGTTCATTTGGCCAGAAGG-GCAGGATGCACAAGCTGGGGATCGGCC
455 ACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAG-AGGTGCAGGATGCGCAAGCCGGGGATCGATC
* * * * *
15691136 GTGTCCCCCTAAGCGTGCTGCCGATCCTACTGTCATAACCCTCGGTCCGGTCCGATCATAGACTG
519 GGGTCCCCCT-CGCGTGCTG-C-ATCCTGCTG-CA-AACCCTCGGTCCGGTCTGATCTTAGACTG
*
15691201 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAG-A-GG-GGGCGGGCGGACGGGCACTAC
579 GGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAAAGAAGGGCGGGCGGGCGGGCGGGCACTAC
* *** * *
15691263 GTCGGCCAGAGAGGCAGGATGCGCAATTAGGGGATCGATAGGGTGGTAGGCGGGTTTAGGCACAT
643 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
15691328 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAGATTCATACAATGGTCCCTTAAG
708 CTTCATATTTCAGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15691393 CCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTTGAAACTTTTT
773 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
15691458 AC-AGTTTGGGATTTTTTAAAATTTTTTCAGAATGATTTTTGGCCCCAAACT
838 ACGA-TTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
* ** *
15691509 TGGTAGACATGATCCTTGTATTTTTGTTGGCATTTACAAAAACATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
15691574 TACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15691639 CAAACCTGTAAAACCTCAAATGCTCTTTAAGAGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** * * *
15691704 GGGGTGAATATAAGGGCCAAG-ACCAGCACCCATCGCATATCATTTGCGCACACCCCCCC-GACC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* ** * * * *
15691767 CCCCTATCGTAAGAACCCCAGTGCCGCCGGTCAGCTTCTCCGGCGATGGTGTCCCGACGACGAAA
261 CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
* * *
15691832 ATA-GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCGCAGCCCTCGGTCCGGTCCAATC
326 ATATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATC
* *
15691896 TTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAA
391 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
15691961 CGAAACGAGCGTGCGGGTGCCCAGCCGGCCAGAGGTGCGGGATGCGCAAGCCGGGGATCGATCGG
456 CGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGTGCAGGATGCGCAAGCCGGGGATCGATCGG
* *
15692026 GTCCCCCTCTGCGTGCTGCAAATCCTGCTGGCACAACCCTCGGTCCGGTCTAATCTTATACTGGG
521 GTCCCCCTC-GCGTGCTGC--ATCCTGCT-GCA-AACCCTCGGTCCGGTCTGATCTTAGACTGGG
* *
15692091 AATGAACTTCGAATGCCTAAGCCAACTGACGAAAAGAACGGGCGGGCGGGCGGGCGGGCACTACG
581 AATGAACTCCGTATGCCTAAGCCAAC-GACGAAAAGAA-GGGCGGGCGGGCGGGCGGGCACTACG
*
15692156 TCGGCCAGAGTGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACAT
644 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACAT
*
15692220 CTTCATATTTCAGCTGTGCCAATGCCA-TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
708 CTTCATATTTCAGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
15692284 CCTTCATGTGAAGTTTCATGGTAAGACGACTCCTTTTCTATTTTTCATGATTTTTGAAACATTTT
773 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
*
15692349 ACGATTCGGGA-TTTTTAAAATTTTTTCCGAAGGATTTTTGGCCCCAAACT
838 ACGATTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
* *
15692399 TGGTAGACGTGATCCTTGTATTTTTTTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
15692464 TACAAGATTTTGTGACCATTTGAAAAAGGTATCCCCATTTCAGATACTTTAATGGCTACTTGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
15692529 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
15692594 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* **
15692657 CCCCGATCGTTGGAACCCTAATGCCGCCGGTCAGGTTCTCCAACGATGGTGTCCCGACGAAGAAA
261 CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
** ** *
15692722 A-ATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCC-CAACCCTCGGTCCAATCCGAT
326 ATATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCGGTCCAAT
*
15692785 CTTAGACTGGGAACGAACTCCGTATGC
390 CTTAGACTGGGAATGAACTCCGTATGC
15692812 CTAAGCCAGC
Statistics
Matches: 1915, Mismatches: 232, Indels: 74
0.86 0.10 0.03
Matches are distributed among these distances:
873 8 0.00
874 221 0.12
875 226 0.12
876 5 0.00
877 3 0.00
878 6 0.00
879 1 0.00
880 2 0.00
881 1 0.00
882 1 0.00
887 292 0.15
888 296 0.15
889 40 0.02
890 575 0.30
891 136 0.07
892 101 0.05
893 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
ATATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGTGCAGGATGCGCAAGCCGGGGATCGATCGG
GTCCCCCTCGCGTGCTGCATCCTGCTGCAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACGACGAAAAGAAGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCAGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCG
GGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
Found at i:15693511 original size:26 final size:26
Alignment explanation
Indices: 15693475--15693527 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693465 CCGGTCCGAT
15693475 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15693501 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15693527 C
1 C
15693528 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15694388 original size:26 final size:26
Alignment explanation
Indices: 15694359--15694411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694349 CCTGTCCGAT
15694359 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15694385 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15694411 C
1 C
15694412 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15695290 original size:26 final size:26
Alignment explanation
Indices: 15695254--15695304 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695244 CCGATCCGAT
* *
15695254 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15695280 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15695305 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.