Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 85 of 160
Found at i:16372326 original size:26 final size:26
Alignment explanation
Indices: 16372287--16372339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372277 CTGGTTCGAT
16372287 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
16372313 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
16372339 C
1 C
16372340 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:16373195 original size:26 final size:26
Alignment explanation
Indices: 16373159--16373237 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
16373149 TCGGTCTGAT
16373159 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
16373185 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
16373211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
16373237 C
1 C
16373238 CTAGGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:16374092 original size:26 final size:26
Alignment explanation
Indices: 16374056--16374108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16374046 CCAGTCTGAT
16374056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16374082 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16374108 C
1 C
16374109 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16374964 original size:37 final size:37
Alignment explanation
Indices: 16374909--16374983 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
16374899 ATGCCGGAGC
**
16374909 CCAGCATGTGCTGTCGCAACCCTCGATCCGGTCTGAT
1 CCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
16374946 CCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
1 CCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
16374983 C
1 C
16374984 TTAGACTGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.17, C:0.37, G:0.23, T:0.23
Consensus pattern (37 bp):
CCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
Found at i:16375012 original size:26 final size:26
Alignment explanation
Indices: 16374983--16375035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16374973 CCGGTCTGAT
*
16374983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
16375009 CTTAAACTTGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
16375035 C
1 C
16375036 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:16376782 original size:26 final size:26
Alignment explanation
Indices: 16376753--16376805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16376743 CCGGTTCGAT
*
16376753 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16376779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16376805 C
1 C
16376806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16377678 original size:26 final size:26
Alignment explanation
Indices: 16377638--16377690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16377628 CCGGTCTGAT
* *
16377638 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16377664 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16377690 C
1 C
16377691 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16378555 original size:26 final size:26
Alignment explanation
Indices: 16378526--16378581 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
16378516 CCGGTCTGAT
** *
16378526 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
**
16378552 CTTAGACAAGGAATGAACTTTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16378578 CTTA
1 CTTA
16378582 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16379068 original size:26 final size:26
Alignment explanation
Indices: 16379018--16379068 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16379008 CCGGTCTGAT
**
16379018 CTTAGACTGGGAATGAACTTTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
16379044 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16379069 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16379938 original size:26 final size:26
Alignment explanation
Indices: 16379909--16379987 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16379899 CCGATCCAAT
16379909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16379935 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16379961 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16379987 C
1 C
16379988 CTAAGTCATC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16381667 original size:893 final size:887
Alignment explanation
Indices: 16378921--16386390 Score: 9423
Period size: 893 Copynumber: 8.5 Consensus size: 887
16378911 GCCTTCATGT
* * * * *
16378921 GTCAGGTTCTCTGACGATGGTGTCCCGACGAAAAAAAATGCGGCACTAGAACATGCCCGAGCCAA
1 GTCAGGTTCTCCGACGATGGTGT-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** *
16378986 GCATGCTGCTG-C--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATACTTA
65 GCATG-TGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
16379048 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGC
129 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
16379113 CAGAGGGGCGGGATGCTCAAGTCGGGGATCGACCGGGTCCCCCTCTATGTGTTCCCGAT-C-G-T
194 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
* * * *
16379175 ACTGTCGTAACCCTCCGTCCGGTCTAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAAC
259 ACTG-C--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
16379240 CGATGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
321 CGACGAAACGAGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * *
16379305 GGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTT
385 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
*
16379370 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACT
450 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
16379435 CGTTTTTTATTTTTCACGATTTTCAAAACTTTTTATGGTTC-AGGATTTTTTAAAAATTTTTTCA
515 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTT-AAAATTTTTTCA
* *
16379499 GAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
578 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16379564 ATTCAGCTAAAATCTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
643 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16379629 AAACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTT
708 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
16379694 CTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATTA
773 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * *
16379759 TGTGCGCACACCCCCCCCGGTGCCCCTGATCG-CAGGAAACCCAATGTCG-CG
838 TGTGCGCACA--CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCG
** ** ** *
16379810 GTCAGGTTCTCCGATAATGGTGTCTCGGTGAAGAAAAATATGGCAACAGCACATGCCCGAGCCCA
1 GTCAGGTTCTCCGACGATGGTGTC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
16379875 GCATGTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
65 GCATGTGCTGCCGTAACCCTC-G---G---------T---CT--G---G---TCCG-AT-CTTAG
* * *
16379940 ACTGGGAACGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCATCCCACG-A
104 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * ** ** *
16380004 ACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCAGGATGCGCAAGGCGAAGATCGGCCTGGTCC
169 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * * * * * *
16380069 CCCTCTATGTGCTGCTGATCCCGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATG
234 CCCTCTACGTGCTACCGATCCTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* *
16380134 AACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGACGGGCACTACGCCGGCCAG
299 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCACTACGCCGGCCAG
* * * *
16380199 GGAGGTGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATT
363 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
16380264 TCTGCCACGCGAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
428 TCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * * * * *
16380329 TAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACAATTTTTCAAACCTTTTACGGTTCGG
493 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA
* *
16380394 GATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTT
558 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
** ** *
16380459 TTGTTGGCATGCATTAAACTATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGA
623 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
16380524 AAAACGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
688 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
16380589 TCTTTAAGGGGGTGTGAGTTCTAGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
753 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
16380654 CCAGCACGCATCGCACATCATGTGTGCAGACCCCCCGCCGGCCCCCCCCGATCGTCGAAACCCCA
818 CCAGCACCCATCGCACATCATGTGCGC--ACACCCC-CCGG-CCCCCCCGATCGTCGGAACCCCA
*
16380719 ATGCCGTCG
879 ATGCCGCCG
* * * *
16380728 GTCAGGTTCTCTGGCGATGGTGTCTCAAAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
1 GTCAGGTTCTCCGACGATGGTGTC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
16380793 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
65 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
16380858 ACTAGGAATGAACTCTGTAGGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCC
130 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
16380923 GGAGGGGAGGGATGCACAAGTCGGGGATCGATCAGGTCCCCCTCCACGTGCTGCCGATCCTACTA
195 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTA
* * * *
16380988 CTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACTGAC
260 CTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
16381053 GAAACGAGCGTGCGGAAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA-CTCATGGA
325 GAAACGAGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC-CGTGGA
*
16381117 TCGATAAGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATATTTTT
388 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC--ATTTTT
* *
16381181 TTGGCTTGTAAATTCATAACAATGGT-CCTT-AGCCTTCATGTGAAGTTTCATGCCAAGACGACT
451 CTGGCTTGTAAATTCAT-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
*
16381244 CGTTTTCTATTTTTCACGATTTTTAAAAACTTTTTACGGTTTCGAGATTTTTAAAAAATTTTTTC
515 CGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGG-TTCGAGATTTTT-TAAAATTTTTTC
* * *
16381309 AGAAGGAGTTTTGGCCGCAAAC-TGGTAAACGTGATCCCTGTATTTTTGTTGGCATGCA-AAAAA
577 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
16381372 TAATTCAGCTAAAAACTCGAAAGTGGT-CAAGATTTTGTTGACCATTTGAAAAAAATGTCCCCAT
642 -AATTCAGCTAAAAACTCG-AAGT-GTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCAT
* * *
16381436 TTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
703 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
16381501 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGGACCCATTGCA
768 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** *
16381566 CATCATGTGTGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCA
833 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * **
16381621 GTCAGGTTCTCCGACGATGGTGTCCGGGCGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCA
1 GTCAGGTTCTCCGACGATGGTGTCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
16381686 GCATGTGCTGTCGTAACCCTCGGTCCGCTCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAG
65 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
16381751 -CTCGGGAATGAACACCGTATGTCTAAGTCAACCCACGAAATGAGCGTCCGGGTGCTTAGCCGGC
130 ACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
16381815 CAGAGGGGCGAGATGCGCAAGCCGGGGATCAATCGGGTCTCCCACTACGTGCTGCCTATCCTGCT
194 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
* **
16381880 ACTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
259 ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
16381945 CGAAACGAGCGGTAG-GGCGGGC-GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
324 CGAAACGAGCGG--GCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
16382008 ATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCGAATGCCATTTTTC
387 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC
* *
16382073 TAGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
452 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * *
16382138 TTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
517 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
**
16382203 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACTATTC
582 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
16382268 CGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
647 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
16382333 TTTAATGGCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
712 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
16382398 AGGTATGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
777 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
16382462 CGCAGACCCCCCGCCGGCCCCCCCGATCATCGAAACTCCAATGTCGTCG
842 CGC--ACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
16382511 GTCAGGTTCTCCGACGATGGTGTCTCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
1 GTCAGGTTCTCCGACGATGGTGTC-C-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
16382575 AGCATGTGCTGCCGTAA-CC-C--TC--G---G---TT----T--G---G---TCCG-AT-CTTA
64 AGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
16382614 GACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAGCCGAC
129 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
16382679 CAGAAGGCCGGGATGCGCAAGCCGAGGATCGATCAGGTCCCCCTCCACGTGCTACCGATCCTGCT
194 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
** * * *
16382744 GTTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACTGA
259 ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
16382809 CGAAACGAGCGGGCGGACAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGTCATGGA
324 CGAAACGAGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
16382874 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCT
388 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
*
16382939 GGCTTG-AAATTCATTCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
453 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * ** *
16383003 TTTTTATTTTTCATGATTTTTGAAACTTTCCACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGG
518 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG
* * * *
16383068 ATTTTTGACCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTCA
583 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
16383133 TCTAAAAAATCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACT
648 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
16383198 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGA
713 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
16383263 GGTTTGATGAGGTATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
778 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * **
16383328 GCACACCCCCCTGCCCCCCCGATTGTCGGAACCCCAATTTCGCCG
843 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * * *
16383373 GTCAGGTTCTCCG-GGCATGGTGTCACGACGAA-AAAAATGCAGCACTAGCAAATGCCCGAGCCC
1 GTCAGGTTCTCCGACG-ATGGTGTC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
16383436 AGCATGTGCTACCGCAA-CC-C--T-T-G---G----T---CT-GG--T----T-CG-AT-CTTA
64 AGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** *
16383475 GACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTTAGGGCG-TGCAACCGG
129 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGG
** * * * * *
16383539 CCAGAGGGGTAGGATACGTAAGCCCGGGATC-AGTTGGGTCCCCCTCTACGTGCTATCGATCCTG
193 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTACCGATCCTG
* * *
16383603 CTACGGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
257 CTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
** * *
16383668 GAC-AAA--A--ATG-AGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
322 GACGAAACGAGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
16383727 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTC
387 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC
* * *
16383792 AGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTGTAAAGTTTCATGGCAAGACGACTCG
452 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * *
16383857 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGATA-TTTTTAAAATTTTTTCAGAAT
517 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
*
16383921 GAGTTCTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
582 GAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
16383985 CAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACTATTTGAAAAAAGTTTCCCCATTTCAGACA
646 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
16384050 CTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
711 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
16384115 GAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
776 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
16384180 GCGCACACCCCCCGGCCCCCCCGATCG-CGAGAAACCTAATACCGCCG
841 GCGCACACCCCCCGGCCCCCCCGATCGTCG-GAACCCCAATGCCGCCG
** * *
16384227 GTCAGGTTCTCCGGTGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
1 GTCAGGTTCTCCGACGATGGTGT-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
16384292 GCATGTGCTGCCGCAA-CC-C--TC--G---G-TC-----C-------G-A-TCCG-AT-CTTAG
65 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
16384331 ACTGAGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACC
130 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
16384396 GGAGGCGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCAT-TGCGTGCTACTGATCCTACT
195 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC-TCTACGTGCTACCGATCCTGCT
* * * * * *
16384460 -GTCGTAAGCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
259 ACT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
16384524 ATGAAACAAACGGGCGGTTGGGCGGGCACTACGACGGCCA-AGGAGGCGAGATGCGCAAGCCGTG
323 ACGAAACGAGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGA-GAGGCGGGATGCGCAAGCCGTG
* *
16384588 GATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGGCAATGCCATTTTT
386 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
** * *
16384653 CTCTCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTC
451 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
16384718 GTTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAA
516 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAA
* * *
16384783 GGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATT
581 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* ** * *
16384848 CAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAACCTGTCCACATTTCAGATA
646 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
16384913 TTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTC
711 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
16384978 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATTGGACATCATGT
776 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
16385043 GCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGTCGCCA
841 GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * ** *
16385090 GTGAGGTTCTCCGGCGATGGCATCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
1 GTCAGGTTCTCCGACGATGGTGT-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
16385155 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
65 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * **
16385220 AATGGGAATGAACTTCGTATGCCTAAGTCAA-CAACGAAACGAACGTGCGGGCTTTCAGCCGGCC
130 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * ** * * * * * *
16385284 AGAGGGGCGGGATGTGCAAGTCGGAGATCGGCCGGGTCCCCCTTTGCGTGTTGCCAATCCTGCTG
195 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTA
** * * *
16385349 CCACAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAACCCAACCGAC
260 CTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
16385414 GAAACGAGC--G-GGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATC
325 GAAACGAGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * *
16385476 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCCGTGCCAATGCCATTTTTCTGG
390 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGG
* * *
16385541 CTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACACATTT
455 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
16385606 TTTATTTTTCACGATTTTCAAAACTTTTTACGATTC-AGGATTTTTTTAAAATTTTTTCAGAAGG
520 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GA-TTTTTTAAAATTTTTTCAGAAGG
*
16385670 AGTTTTGGCCCCAAACTTGGTAGATC-TGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTC
583 AGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
** * *
16385734 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC-TTATG-AAAACCTGTCCACATTTTAGACA
647 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCATTTCAGACA
* * *
16385797 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCTC
711 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
16385862 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGCACCAGCACCCATTGGACATCATGT
776 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * *
16385927 GCGTACACCCATCGGCCCCCCCGATTGTCGGAACCCCAATACCGCCG
841 GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
16385974 GTCAGGTTCTCC-AGCGATGGCGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC
1 GTCAGGTTCTCCGA-CGATGGTGT-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
16386038 AGCATGTGCTGCTGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGGTTA
64 AGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * **
16386103 GACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCAGGAACTCAGCCGGC
129 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
16386168 CAGAGGGGCGGGATGTGTAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCT
194 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
* * * * * * ** *
16386233 GCCGCAACCCTCAGTCTGGTTTGTTCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACTGA
259 ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** * * *
16386298 CGAAATGAATGGGCGATCAGGCGGGCACTACGCCGGCCAGAGTGGCGGGATGCGCAAGCCGTGGA
324 CGAAACGAGCGGGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
16386363 TCGGTAGGGTGGTAAGTGGGTTTAGGCA
388 TCGATAGGGTGGTAGGTGGGTTTAGGCA
16386391 TCAAACTTGG
Statistics
Matches: 5776, Mismatches: 658, Indels: 294
0.86 0.10 0.04
Matches are distributed among these distances:
853 2 0.00
854 431 0.07
855 313 0.05
856 7 0.00
858 2 0.00
860 7 0.00
861 228 0.04
862 259 0.04
863 376 0.07
864 502 0.09
865 152 0.03
866 3 0.00
867 2 0.00
869 2 0.00
872 1 0.00
873 2 0.00
874 1 0.00
878 3 0.00
884 524 0.09
885 265 0.05
886 5 0.00
887 46 0.01
888 263 0.05
889 212 0.04
890 171 0.03
891 51 0.01
892 214 0.04
893 607 0.11
894 51 0.01
895 78 0.01
896 43 0.01
897 159 0.03
900 1 0.00
902 2 0.00
904 1 0.00
905 1 0.00
907 1 0.00
909 1 0.00
912 1 0.00
914 1 0.00
915 264 0.05
916 350 0.06
917 87 0.02
918 80 0.01
919 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
GTCAGGTTCTCCGACGATGGTGTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTAC
TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
Found at i:16385218 original size:26 final size:26
Alignment explanation
Indices: 16385189--16385241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16385179 CCGGTCCGAT
*
16385189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
16385215 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16385241 C
1 C
16385242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16386103 original size:26 final size:26
Alignment explanation
Indices: 16386074--16386124 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16386064 TGATCCGATC
*
16386074 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
16386100 TTAGACTGGGAATTAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16386125 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16386825 original size:26 final size:26
Alignment explanation
Indices: 16386786--16386839 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16386776 TCCATTTTGA
16386786 GCTTAGACTAGGAATGAACT-TCGTAT
1 GCTTAGACTAGGAATGAACTCT-GTAT
* *
16386812 GCTTAGACTGGGAATTAACTCTGTAT
1 GCTTAGACTAGGAATGAACTCTGTAT
16386838 GC
1 GC
16386840 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCTGTAT
Found at i:16388117 original size:889 final size:887
Alignment explanation
Indices: 16386392--16391265 Score: 6801
Period size: 885 Copynumber: 5.5 Consensus size: 887
16386382 GTTTAGGCAT
*
16386392 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
16386457 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTTAGACACTTTAATGGCTAT
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
16386522 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
16386587 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACGTCATGTGCGCACTCCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC
* * * * *
16386652 CGGCCCCCTCCACTCGTTGGAACCCCAATGCAGCCGGTCAGGTTCTCCGACGATGGTGTCCCGAC
260 CGTCCCCC-CCA-TCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGAC
* * * **
16386717 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCATT
323 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
** * ** * * * * *
16386782 TTGAGCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTA
388 CCGATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
16386847 AACCCCCGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGGATC
453 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-CGGGATGCACAAGCCGGGGATC
* * * * * *
16386912 GATCGGGTCCCCCTCTCCGTGCTACC-ATCCTGCTACCGCAACCCTC-GATCCGGTCCGATCTTA
517 GGTCAGGTCCCCCTCTGCATGCTGCCAATCCTGCTACTGCAACCCTCAG-TCCGGTCCGATCTTA
* * * ** *
16386975 GACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGTAGGCGGGCGGGCGGGCACT
581 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCGGGCACT
* * * *
16387040 ACGCCGACCAGAGAGGCGGGATGCGCAAGCCATTGATCGATAGGGAGGTAGGTGGGTTTAGGCAC
646 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
16387105 ATCTTCATATTTCTGCTATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
711 ATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
16387170 AGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTT
776 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
16387235 TTACGGTTCGAGATTTTTCAAACTTTTTTCAAAACGAGTTTTGGCCC
841 TTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
16387282 CAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTT
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
16387347 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
16387412 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
16387477 GGATAAGGGGCCAGTATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
16387542 GATCCCCCCCATCATCGGAACCCCAATGCCGTTGATCAAGTTCTCCGACGATGGTGTCCCGACGA
261 G-TCCCCCCCATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * * ** *
16387607 ACAAAAATGCGGCACCAGCACATACTTGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCC
325 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
* *
16387672 GATCTTAGGCGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAA
390 GATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * **
16387737 CCCATGAAACGAGCGTACGGGCGTTCAGACGACCAGAGGAGCGGGATGCACAAGTTGGGGATCGG
455 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG-GCGGGATGCACAAGCCGGGGATCGG
* * * *
16387802 TCAGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCTACAACCCTCAGTCTGGTCCGATCTTAGAT
519 TCAGGTCCCCCTCTGCATGCTGCCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTTAGAC
* * *
16387867 TGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGACGGGCACTATG
584 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCGGGCACTACG
* * *
16387932 CCGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATC
649 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
16387997 TTCATATTTTTGCTGTGCCATTGCCATTTTTCTAGCTTGTAAATTAATACAATGGTCCCTTAAGC
714 TTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
16388062 TTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
779 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
16388127 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
844 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
16388171 C--A--TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
16388232 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
16388297 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTTAGTTCTCAATGTTTGGTGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
16388362 GGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * * *
16388427 CGGTCCCCCCCATCGTCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACG
260 C-GTCCCCCCCATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACG
* * *
16388492 AA-AAAGAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGC-AGCCGCAACCCCCGATCCGG
324 AAGAAA-AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCCGG
** * *
16388555 TCCGATCTTACTCTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
387 TCCGATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
16388620 CAACCCATTAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAAGCCGAGGAT
452 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCACAAGCCGGGGAT
* * ** * *
16388685 CGG-CTAAGTCCCCCTCTACATGCTATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTT
516 CGGTC-AGGTCCCCCTCTGCATGCTGCCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTT
* * * * **
16388749 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGTGCGAGTGGGCGGGCGGGCAC
580 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCGGGCAC
* * * *
16388814 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGCTTTAGGCA
645 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
16388879 CATCTTTATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATGCGACGGTCCCTT
710 CATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* *
16388944 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAGCTT
775 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
*
16389009 TTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CC
840 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* *
16389056 CAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
16389121 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATTGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
16389186 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
16389251 GGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACGTCATGAGCGCACACCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
16389315 TGGT--CCCCCATCATC-GAACCCCAATGCCGTAGGTCAAGTTCTCCGACGATGGTGTCCC-AGC
261 --GTCCCCCCCATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGA-C
* * * * * *
16389376 GAACAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCATCGGTCCAGT
323 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
*
16389441 CCGATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTC
388 CCGATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
16389506 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCACAAGCCGGGGATC
453 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGCGGGATGCACAAGCCGGGGATC
* * * * * * *
16389571 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACTACAACCCTC-GATCCGATCCGATCTTA
517 GGTCAGGTCCCCCTCTGCATGCTGCCAATCCTGCTACTGCAACCCTCAG-TCCGGTCCGATCTTA
* * * * *
16389635 GACTGGGAATTAACTCTGTATGCCTAAGCCAACCTATGAAACGGGCGGGC-GGACGGGTGGGCAC
581 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGG-CGGGCGGGCAC
* * *
16389699 TACGCCAGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
645 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
16389764 CATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
710 CATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* * *
16389829 AAGTCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAAGATTTTTGAAACTT
775 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* *
16389894 TTTACGTTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
840 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
16389942 C--A--TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
16390003 GTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
16390068 TGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
** * *
16390133 GGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCTCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* ** * * * * * * *
16390198 GACCCCCCCGATCCCCAGAACCCTAATGTCGTCGGTCAGGTTATCCGGCGATGGTGTCTCGATGA
261 GTCCCCCCC-ATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGA
* * * * *
16390263 AGAAAACTACGGCACCAGCACGTGCCCGAGCCCAGCATGTGCTGCCTCAACCCTCGGTCCGATCC
325 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
* *
16390328 GATCTTAGACGGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTATGTCAA
390 GATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * * * * *
16390393 CCCACGGAACGAACGTGCGGGCTCTCAATCGACCAGAGGG-GTGAAATGCGCAAGCCAGGGATTG
455 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCG-G-GATGCACAAGCCGGGGATCG
* * * * * **
16390457 GCCTGGTCCCCTTCTGCATGCTG-CAGATCCTGCTACCGCAACCCTCTA-TCCAGTTTGATCTTA
518 GTCAGGTCCCCCTCTGCATGCTGCCA-ATCCTGCTACTGCAACCCTC-AGTCCGGTCCGATCTTA
* *
16390520 GACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA----C--G-A-GCGGGCGGGCACT
581 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCGGGCACT
* *
16390577 ACGCTGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
646 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** *
16390642 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCAAACAATGGTCCCTTA
711 ATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * *
16390707 ATCCTTAATGTGAAGTTTCATGGCAAGACGGCTCCTTTTTCTATTTCTCATGATTTTTGAAGCTT
776 AGCCTTCATGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCATGATTTTTGAAACTT
* * *
16390772 TTTAAGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTCT-GCCC
840 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
16390819 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACAC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
16390884 GAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCTGACACTTTAATAGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
16390949 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
16391014 GGATAGGGGGCAAATATAAGGGCCAAGTGA-TAGCACCCATCGCACATCATGTGCGCACACCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * ** * *
16391078 CCGGCCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGGTGTCCTGGC
259 CCGTCCCCCCC-ATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGAC
* * * * *
16391143 GAAGAAAAATATGACACCAGCACAGGCCAGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGAT
323 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
* * * * * * *
16391208 TCGATCTTAGACTGAGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCCTATGC
388 CCGATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
16391266 TTAGACTGGG
Statistics
Matches: 3554, Mismatches: 388, Indels: 92
0.88 0.10 0.02
Matches are distributed among these distances:
877 167 0.05
878 67 0.02
879 2 0.00
881 230 0.06
882 370 0.10
883 37 0.01
884 15 0.00
885 1054 0.30
886 573 0.16
887 11 0.00
888 260 0.07
889 523 0.15
890 245 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GTCCCCCCCATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCG
ATCTTAGACGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCACAAGCCGGGGATCGGTC
AGGTCCCCCTCTGCATGCTGCCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCGGGCACTACGCC
GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
Found at i:16391242 original size:26 final size:26
Alignment explanation
Indices: 16391213--16391291 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16391203 CCGATTCGAT
* * *
16391213 CTTAGACTGAGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16391239 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391291 C
1 C
16391292 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16391527 original size:26 final size:26
Alignment explanation
Indices: 16391498--16391550 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16391488 CCGATTCGAT
16391498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391550 C
1 C
16391551 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16392406 original size:26 final size:26
Alignment explanation
Indices: 16392377--16392429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16392367 CCGGTCCGAT
16392377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16392403 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16392429 C
1 C
16392430 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16393271 original size:26 final size:26
Alignment explanation
Indices: 16393242--16393292 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393232 CTGGTCCGAT
* *
16393242 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACACCGTATG
*
16393268 CTTAGACTGGGAATAAACACCGTAT
1 CTTAGACTGAGAATAAACACCGTAT
16393293 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACACCGTATG
Found at i:16393412 original size:865 final size:863
Alignment explanation
Indices: 16391427--16394139 Score: 3161
Period size: 865 Copynumber: 3.1 Consensus size: 863
16391417 GGTGTCCTAG
* * * * * *
16391427 CGAAGAAAAATATGGCACCAGCACAGGCCAGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGA
1 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
16391492 TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * * * *
16391557 CAACCCATGAAAAGAGCATGCGGGTACTCAGCCGACCAGAGGGGCGAGATGCATAACCCGGGGAT
131 CAACCCACGAAAAGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCAGAGAT
* * **
16391622 CGGAT-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGTAACCCTC-AATCTGGTCTGATCT
196 CGG-TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGATCT
* *
16391685 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACAAACGGGCGGGCGGGCAGGCA
259 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG----AAACGAGCGGGC-GG-AGGCA
* ** * *
16391750 CTACATCGGCCAGAGAGGTTGGATGCGCAAG-CTGTGGATCGATAGGGTGGTAGGTGGTTTTAGG
318 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCAG-GGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * *
16391814 CATATCTTCATTATTTCTGTCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
382 CACATCTTCA-TATTTTTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCC
* * * *
16391879 CTTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTCAAAA
446 CTTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAA
* * * *
16391944 CTTTTAACGGTTCGGGATTTTTTTAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGAC
511 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGG-CCCAAACTTGGTAGAC
* *
16392009 GTGATCCTTGTGTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
575 GTGATCC-TGT-ATTTTGTTGGCA-GCTC---A-AATT-AGCTAAAAACTCGAAGTGTACAAGAT
16392074 TTTGTGACCATTTG-AAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
632 TTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-
* * *
16392138 TAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTATTCAAGATTTGATGAGGGATATGGGGCCAA
695 T-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TTCGAGGTTTGATGAGGGATA-GGGGCCAA
*
16392203 TATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCACGGCCCCCCCGA
757 TATAAGGG-CAAG-ACCAGCACCCAT-TCACATCATGTGTGCACA--CCCCCA-GGCCCCCCCGA
*
16392268 TCGTCGGAACCCCAATGCCGTCGGTCAGG-T-T-C------T--CCGA
816 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGATGGTGCCCGA
* * *
16392305 CGAAGAAAAATGCGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAATCCTCGGTCCG
1 CGAAGAAAAATAC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
16392370 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
65 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
16392435 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGGCGGCCAGAGGGGTGGGATGCACAAGTCAGAGA
130 TCAACCCACGAAAAGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCAGAGA
* *
16392500 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTTCGGTCTGATCTT
195 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTT
* * *
16392565 AGACTGGGAATGAATTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGC-G-GGCACTACACC
260 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAGGCACTACACC
16392628 GGCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
325 GGCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
16392693 CATATTTTTGCCATCCCAATGCCATTTTTCTAACTTGTAAATTCAAACAATGGTCCCTTAAGCCT
390 CATATTTTTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
16392758 TCATCTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATAATTTTCAAAACTTTTTACG
455 TCATATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACG
*
16392823 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCTAAACTTGGTAGAC-TGATCC-G
520 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCC-AAACTTGGTAGACGTGATCCTG
*
16392886 TATTTTGATT-GCAGCTCAAA-T-GCTAAAAGACTCGAAGTGCA-AAGAATTTT-TGACCATTTG
584 TATTTTG-TTGGCAGCTCAAATTAGCTAAAA-ACTCGAAGTGTACAAG-ATTTTGTGACCATTTG
* ** *
16392946 AAAAAAGTGTCCCTATTTC-GACAC-TTAAGTCCGGCTTCTAACAGCAAACGCTTAAA-C-CGAA
646 AAAAAAGTGTCCC-ATTTCAGACACTTTAA-T--GGCTACTGGCAGCAAAC-CTTAAATCTCAAA
* * * * * *
16393007 TGCTCTTTAA-GGGGT-TG-GTTTCGTCGGTTTGATTGCA-GTACAGGAGTTCCATTGTCTAAGG
706 TGCTCTTTAAGGGGGTGTGAGTTTCG-AGGTTTGA-TG-AGGGATAGG-G-GCCA--ATATAAGG
* *
16393068 G-AA-ACCAGCA-CCATTGCACGTCATGTGTGCACACCCCCTAGGCCCCCCCCGATTGCCGGAAC
764 GCAAGACCAGCACCCATT-CACATCATGTGTGCACACCCCC-AGG-CCCCCCCGATCGCCGGAAC
*
16393130 CCCAATGTCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGA
826 CCCAATGCCGTCGGTCAGGTTCTCC-G-GATGGTG-CCCGA
* * * *
16393171 CGAAGAAAAATACGGGACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTCTGG
1 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
16393236 TCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACACCGTATACCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
16393301 CAACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCAAAGGGGCGAGATGCGCAAGCCAGTGAT
131 CAACCCACGAAAAGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCAGAGAT
* * * * * *
16393366 TGGTCGGGTCCCCCTCTATGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCCAGTCTGATCTTA
196 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTA
* *
16393431 GAC-GAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGCTACG
261 GACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA-GG-CACTACA
* * *
16393495 CCAGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGATA-----G--GGT-GG--T---CACATC
323 CCGGCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
16393547 TTCATATTTTTGCCATGCCAATGCCATTTCTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGC
388 TTCATATTTTTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
16393612 CTTCATATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAGGATTTTTGAAACTTTTTA
453 CTTCATATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTA
* * * *
16393677 CGGTTTGGGATTTTTTAAAATTTTTTTAGAAGGTGTTTTTGTCCCAAACTTGGTAGACGTGATCC
518 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG-ATTTTTGGCCCAAACTTGGTAGACGTGATCC
* * *
16393742 TTGTATTTTTGTTGGCGTGCACTAATAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGA
582 -TGTA-TTTTGTTGGC-AG--CT--CAAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
16393807 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTACAATC
639 CCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC-TTA-AATC
16393872 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
701 TCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
* ** *
16393937 GCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGCCCCCCCGATCACCGGAAC
764 G-CAAG-ACCAGCACCCAT-TCACATCATGTGTGCACACCCCCAGGCCCCCCCGATCGCCGGAAC
* * *
16394002 CCCAATGCCGTCGATCAGGTTCTCCGACGATGG-GTCTCGG
826 CCCAATGCCGTCGGTCAGGTTCTCCG--GATGGTG-CCCGA
* * * *
16394042 TGAAGAAAAATACAGCAGCAGCACATGCCCGAGCTCAGCATGTGCTGCCGCAACCCTCGGTCTC-
1 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CG
* * * * *
16394106 GTCTGGTCTTAGACTGGTAATAAACTCTGTATGC
65 GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
16394140 CTAAGTGAAC
Statistics
Matches: 1581, Mismatches: 174, Indels: 167
0.82 0.09 0.09
Matches are distributed among these distances:
851 7 0.00
852 37 0.02
853 23 0.01
854 18 0.01
855 9 0.01
856 179 0.11
857 31 0.02
858 35 0.02
859 41 0.03
860 23 0.01
861 7 0.00
862 4 0.00
863 3 0.00
864 2 0.00
865 271 0.17
866 27 0.02
867 35 0.02
868 39 0.02
869 67 0.04
870 179 0.11
871 168 0.11
872 55 0.03
873 21 0.01
874 28 0.02
875 10 0.01
878 12 0.01
879 248 0.16
880 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAAAGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCAGAGAT
CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAGGCACTACACCG
GCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTTTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCAAACTTGGTAGACGTGATCCTGTA
TTTTGTTGGCAGCTCAAATTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCAAGACCAGCACCCAT
TCACATCATGTGTGCACACCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
TCTCCGGATGGTGCCCGA
Found at i:16395190 original size:26 final size:26
Alignment explanation
Indices: 16395161--16395213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16395151 CCGGTCCGAT
16395161 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
16395187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16395213 C
1 C
16395214 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16396940 original size:26 final size:26
Alignment explanation
Indices: 16396900--16396952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396890 CTGATCTGAT
*
16396900 CTTAGACTGGTAATGAAC-TCAGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
16396926 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16396952 C
1 C
16396953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16397755 original size:890 final size:888
Alignment explanation
Indices: 16394252--16397816 Score: 4494
Period size: 890 Copynumber: 4.1 Consensus size: 888
16394242 TTACTTCCAT
* * * * *
16394252 AACCCTCAGTCCGGTCCGCTCTTAGATTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
16394317 CCATATACCTAAGTAAACACACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * * * * * *
16394382 CTCAAGTCGGGGATCGGT-TAGGTCCCCCTCTACATGCTGTCGATCCTGTTGTCGCAACCCTTGA
131 CGCAAGTCGAGGATCGATCGAGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACCC-TCA
* * * *
16394446 TTCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGC
195 GTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
*
16394511 TGGTAGGCGGGCACTACGCC-GCCAGAGAGGCGGCATGCGCAAGCCGTGGATCGATAGGGTGGTA
260 -GGT--GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
16394575 GGTGGGTTTAGGCACATCTTCATATTTTTGCCTTGCCAATGCCATTTTTTTGGCTTGTAAATTCA
322 GGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCA
* *
16394640 TACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCAC
387 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAC
* * * * *
16394705 GATTTTTAAAACTTTTTGCGGTTAGAGATTTTTTAAATTTTTTTCAGAAGGATTTTTGGCCCCAA
452 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* *
16394770 ACTTGGTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACA-CGA
517 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-ATCGA
* * * *
16394833 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATGTCAGAAACTTTAATGGCCACTG
581 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
** *
16394898 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCATGTGAGTTCTCGAGATTTGATGAGGG
646 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
** * *
16394963 ATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATCACACATCATGTACGCACACCCCCCAT
711 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAT
* *
16395028 -GGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGCG
775 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGGCG
* *
16395092 AAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGC
840 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
16395141 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
16395206 CCGTATGCCTAAGTCAACCCATGAAACAAGAGTACGGGCGCTCAACCGACCAGAGGGGCGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * ** * *
16395271 CGCAAGTCGAAGATCGGTCGAGGT-CCCCTCTGTGTGCTACCAATCCTG-TGACCGCAACCCTCA
131 CGCAAGTCGAGGATCGATCGAGGTCCCCCTCTACGTGCTATCGATCCTGCTG-CCGCAACCCTCA
* * * * *
16395334 GTTGGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGATGAAACGA----A
195 G-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
16395395 CGG-GCGGGCAGTACGTCGGCTACAGAGGCGGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGG
259 CGGTGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
16395459 TGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTAGCTGGTAAATTCATA
324 TGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATA
* * *
16395524 CAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGA
389 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGA
** * * * *
16395589 TTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTATTTCAGAAGAAGTTGTGGCCCCAAAC
454 TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
16395654 TTGGTAGACGTGATCCCTGTATTTTTGTTGGCAAGCACAAAAAAATTCA--T------TCGAAGT
519 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGT
* * *
16395711 GTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTTAGACACTTTAATGGCTACTGACA
584 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * **
16395776 GCAAATCTGTAAAATCCCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTCGGTTTGATGAGGGATA
649 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
16395840 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-TCGGC
714 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCATCGGC
* * * * * * **
16395903 CCCCCCGATCG-CCGAGCCCTAATGCCGCCGGTCAGGTTCTCCAATGATGGTGTCTCAACGAAGA
779 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGA
* *
16395967 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTTCTGCCAC
844 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
16396012 AA-CC-C--T-C-A----ATC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * **
16396051 CTGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGTGCTCAGCCAGCCAGAGGGGTGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * * * * * * *
16396116 CACAAGTCGGGGATCTACCG-GGTCCCCCTCTACGTGCTGTAGATCCTACTGCCACAACCTTTGA
131 CGCAAGTCGAGGATCGATCGAGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACC-CTCA
* ** * * *
16396180 TTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAATGAGCGGGT
195 GTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----
* ** * *
16396245 GGGCGGACGGGCGGGCACTATACCGGCCAGAAAGGCGGGATGCGTAAGCCGTGGATCGATAGGGT
256 GGGC-G--GTGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
16396310 GGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
318 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAA
*
16396375 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTT
383 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
* * *
16396440 TCATGATTTTCAAAACGTTTTACGGTTCGAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCC
448 TCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * * * *
16396505 TCAAATTTGGTAGAC-TGGATCTTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAC
513 CCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAA
** * * **
16396569 TCGAAGTGTACAAGATTTTGTGACCATTTGATGAAAGTGTCCCCATTTCAAACAATTTTTTGGCT
577 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16396634 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATG
642 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * * *
16396699 AGGGATAGCGGACCAGTATAAGAGCCTAGTACCAGCACCCATCGCACGTCATGTGTGCACACCCC
707 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * ** * *
16396764 CTTCGG-CCCCCCGATCGTCGAAATCCTAATGCCATCGGTTAGGTTCTCCGACGATGGTGTCCCT
772 CATCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCG
* * * *
16396828 GCGAAGAAAAATGCGGCACCAGCACGTGCCCGAGCCCAGCATATGCTGTCGC
837 GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
16396880 AACCCTCGATCTGATCTGATCTTAGACTGGTAATGAACTCAGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * ** *
16396945 TCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCATTCAGCCGGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * **
16397010 CGTAAGCCGAGGATCGATCGA-GTCCCCTTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAG
131 CGCAAGTCGAGGATCGATCGAGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAG
* ** *
16397074 TCTGGTCTGATCTTAGTTTAGGAATGAACTCCGTAT-CTCTAAGCCAACCGACGAAACGAGCGGG
196 TC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGACGAAACGAGCGGG
* * * *
16397138 CGAGCGTGCGGGCTCTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTTGT
259 C--G-GTGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
16397203 AGGTGGGTTTAGGTAGATCTTCATATTTCTGCTGTGCCAATGCAATTTTTCTGGCTTGTAAATTC
321 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTC
*
16397268 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
386 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCA
* * *
16397333 CGATTTTCGAAACATTTTT-CGGTTCGATATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCC
451 CGATTTTCAAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* *
16397397 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAAATC
515 AAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATC
16397462 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
579 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
16397527 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
644 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* ** *
16397592 GGATAGGGGGCCAATATAAGGGCCAAGTATCAGCTTCCACCGCACATCATGTGCGCACACCCCC-
709 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCA
* ** * *
16397656 T-GGCCCCCCTGATCG-CTGGAACCCCAATGCCGCCGGGAAGGTTCTCTGGCGATGGTGTCCCGG
774 TCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGG
* *
16397719 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGT
838 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
16397770 AACCGTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGC
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
16397817 CTAAGCCGAC
Statistics
Matches: 2283, Mismatches: 323, Indels: 139
0.83 0.12 0.05
Matches are distributed among these distances:
844 3 0.00
845 160 0.07
846 6 0.00
847 4 0.00
850 1 0.00
853 2 0.00
854 1 0.00
856 3 0.00
857 271 0.12
859 1 0.00
861 3 0.00
865 92 0.04
866 78 0.03
867 16 0.01
868 86 0.04
869 3 0.00
870 3 0.00
871 87 0.04
872 19 0.01
874 79 0.03
875 93 0.04
878 3 0.00
881 13 0.01
882 237 0.10
883 26 0.01
884 2 0.00
885 1 0.00
888 4 0.00
889 211 0.09
890 385 0.17
891 216 0.09
892 3 0.00
893 7 0.00
894 164 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
CGCAAGTCGAGGATCGATCGAGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAG
TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
GTGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCATCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
Found at i:16398554 original size:26 final size:26
Alignment explanation
Indices: 16398503--16398555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16398493 CCGGTCTGAT
*
16398503 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16398529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16398555 C
1 C
16398556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16401826 original size:26 final size:26
Alignment explanation
Indices: 16401775--16401826 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16401765 CCGATCAGAT
* *
16401775 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16401801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16401827 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16402693 original size:26 final size:26
Alignment explanation
Indices: 16402657--16402709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16402647 CCGATCCGAT
*
16402657 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16402683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16402709 C
1 C
16402710 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16403549 original size:888 final size:890
Alignment explanation
Indices: 16400909--16404328 Score: 4730
Period size: 888 Copynumber: 3.9 Consensus size: 890
16400899 CTGGTCCGAT
* * * * * * * *
16400909 CTTAGACTGGGAATGAACTCTGTAAGCCTAAGTCAACCTACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGC
** * * * *
16400974 CGGTGAGAGGGGCAGGATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
16401039 TACTGCCGCAACCCTCGGTCTGATCAGATCTTAGACTGGGAATGAACTCTGTATGTCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
16401104 TCGACGAAACGAGTGGGCGGGCGGGCA-GGCACTACACCGACCAAAGAGGCGAGATGTGCAAGCC
196 CCGACGAAAAGAGCGGGCGGGCGGG-AGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
16401168 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
16401233 TTTCTGGCTTATAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAA
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
16401298 CTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
16401363 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
16401428 ATTCAGCTAAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
520 ATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
16401493 AACACTTTAATGGCTATTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
16401558 TCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
16401623 ATGTGTGCACACCCCCCTCGGCCCCCACGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCC
714 ATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGATTCTCC
* *
16401688 GACGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
778 GGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAGC
* *
16401753 GCAACCCTCA-GTCCGAT-CAGATCTTAGTCTGGGAATGAACTCTATATG
843 GCAACCCT-AGGTCCGATCCA-ATCTTAGACTGGGAATGAACTCCATATG
* * * *
16401801 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGC
* * *
16401866 CGGCTAG-AGGTGC-GAGATGCGCAAGCCGAGGATCGATCGGATCCCCCTCTGCGTGC-G-----
66 CGGCCAGAAGG-GCAG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * * *
16401923 ------GTCGCAACCCTCGGTCCAGTCCGATCTAAGACTGAGAATAAACTCCGTATGCCTAAGCC
129 CCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** *
16401982 AACCGATGAAACGTGCGGACGGACGGGCGGGCGGGCTGGCACTACGTCGGCCAGAGAGACGGGAT
194 AACCGACGAAA-----AGA--G-CGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
16402047 GCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTACCGTGCC
251 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* * * *
16402112 AATGCCATTTTTCTGGCTTGTAAATCCATATAATGGTCCCTTAAGCCTCCATGTGAAGTTTCACG
316 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
*
16402177 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
381 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* *
16402242 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACCTGGT--A-GTGATCCTTGTATTTTTGTTGGCATG
446 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
16402304 CACAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCC
511 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
16402369 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
576 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * *
16402434 GTGTGAGTTCTCGAGGTTTCATGAGAGATATGGGGCCAATATGAGGGCCAAATACCAGCACCCAT
641 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** *
16402499 CGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGCTCGTCGGAACAACAATGTCGTCGGTCAG
706 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAG
* * * *
16402564 ATTCTCCGGTGATGGTGTCTCGATGAA-AAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATG
771 ATTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
16402628 TGCT-GCCGCAACACTCGGTCCGATCCGATCTTAGACTGGGGATGAACTCCATATG
836 TGCTAG-CGCAACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
* *
16402683 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCATTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGC
* * * ** * *
16402748 CGGCCAGAAGGGCAGGATTCGCAAGCCGGGGATCGGTCGTGTCCCCCTAAGCGTGGTGCCGATCC
66 CGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * *
16402813 TACTGCCGCGACCCTCGGTCCGGTTTGATCATAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16402878 CCGACGAAAAGAGCGGGCGGGCGGGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTCA
196 CCGACGAAAAGAGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CC
* *
16402943 G-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCCATGCCGATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
16403007 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
325 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
*
16403072 CTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * ** **
16403137 GAACGATTTTTGG-CCCAAACTTAGTAGGTGTGATCCTTGTATTTTTGTTGGCATTTACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16403201 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAACGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16403266 ACACTTTAATGACTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
16403331 CTCAAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACACGTCGCATATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * *
16403396 T-TACGCACACCCCCCCGACCCCTCCGATCGTCGGAACCCCAGTGCCACCGATCAGCTTCTCCGG
715 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGATTCTCCGG
* *
16403460 CGATGGTGTCCCGGTGAAGAAAAAAGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTAGCGC
780 CGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAGCGC
* * *
16403525 AGCCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATG
845 AACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
* * * *
16403571 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCATG-AGAGCGCCCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAG-GCACTCAG
* * * * * *
16403635 CCGGCCAGAGGGGCGGGATGCGCACA-CCGGGTATCGATCGGGTCCCCTTCTGCATGCTGCTAAT
65 CCGGCCAGAAGGGCAGGATGCGCA-AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * *
16403699 CCTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGAATGCCTAAGCC
129 CCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
16403764 AACCGACGAAAAGAGCGGGCAAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGC
194 AACCGACGAAAAGAGC-GG---GCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
16403829 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATG
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
*
16403894 CCATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAA
320 CCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * *
16403958 GACGACTCGTTTTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGA---TTCAAAATTT
385 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TT
* * *
16404020 TTTTC-GAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAA
449 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
16404084 AAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
16404149 TTTCAGATACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
16404214 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCAGCCATCAC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
16404279 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG-CTGGAACCCTAATG
709 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATG
16404329 CCATTAGTCA
Statistics
Matches: 2230, Mismatches: 253, Indels: 93
0.87 0.10 0.04
Matches are distributed among these distances:
880 58 0.03
882 180 0.08
883 63 0.03
884 185 0.08
885 59 0.03
886 236 0.11
887 71 0.03
888 733 0.33
889 263 0.12
890 7 0.00
891 110 0.05
892 206 0.09
894 59 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGC
CGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCC
TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAAAGAGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGATTCTCCGGC
GATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAGCGCA
ACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
Found at i:16403581 original size:26 final size:26
Alignment explanation
Indices: 16403545--16403597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16403535 CCGATCCAAT
16403545 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
16403571 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16403597 C
1 C
16403598 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16405005 original size:774 final size:773
Alignment explanation
Indices: 16403707--16405122 Score: 2319
Period size: 774 Copynumber: 1.8 Consensus size: 773
16403697 ATCCTGCTAC
* *
16403707 CGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGAATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGACG
* * * *
16403772 AAAAGAGCGGGCAAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCCGTG
66 AAAAGAGCGGG--AGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCGTG
16403837 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATGCCATTTTT
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATGCCATTTTT
* *
16403902 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCG
194 TGGCATGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCG
*
16403967 TTTTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGATTCAAAATTTTTTTCGAAAGAT
259 TTTTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGATTCAAAATTTTTTTCGAAAGAG
*
16404032 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
324 TTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
* *
16404097 TAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGATACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
* **
16404162 AATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAAAGGGTGTGAGTTCTCGAGG
*
16404227 TTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCA-GCCATCACACATCATGTGCG
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACG-CATCACACATCATGTGCG
* * **
16404291 CACACCCC-C-CGGCCCCCCCGATCGCTGGAACCCTAATGCCATTAGTCAGGTTCTCTGACTGGG
583 CACACCCCGCGCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCAGTCAGGTTCTCTGACTGGG
16404354 AATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGTGCGCTCAGCCTGCCAGAGGG
648 AATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGTGCGCTCAGCCTGCCAGAGGG
16404419 CGGGGATACGTAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCGGCTCGATCCATCTGT
713 CGGGGATACGTAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCGGCTCGATCCATCTGT
*
16404480 CGCAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGAC
* *
16404544 GAAACGAGC-GG-GCGGGCGGGCGGGCACTGCACCGGCCAGAGAGACGGGATGCACAAGCCGTGG
65 GAAAAGAGCGGGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCGTGG
**
16404607 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATGCCATTTTT-
* *
16404672 TGGCATGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCG
194 TGGCATGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCG
*
16404737 TTTTCTATTTTTCACAATTTTTGAAAC-TTTATACGGTTCGGGATTTTTTAAAA-TTTTTTCAGA
259 TTTTCTATTTTTCACAATTTTTGAAACATTT-TACGGTTCGGGA---TTCAAAATTTTTTTC-GA
* * * *
16404800 AGGAGTTTTGGCCCTAAACTTGGTAGATGTGATAGTTGTATTTTTGTTGGCATGCATAAAAAAAA
319 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCA-AAAAAAAA
* *
16404865 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGA
383 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGA
*
16404930 CACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTT-TTTAAAAGGGTGTGAGTT
448 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-TTGTTTAAAAGGGTGTGAGTT
*
16404994 CTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCA
512 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCA
*
16405059 TGTGCGCACACCCCGCGTCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTC
577 TGTGCGCACACCCCGCG-CGGCCCCCCCGATCGCCGGAACCCCAATGCCACCAGTCAGGTTCTC
16405123 CGACGATGGT
Statistics
Matches: 593, Mismatches: 37, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
769 112 0.19
770 100 0.17
772 11 0.02
773 124 0.21
774 201 0.34
775 4 0.01
777 41 0.07
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (773 bp):
CGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGACG
AAAAGAGCGGGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATGCCATTTTTTG
GCATGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTT
TTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGATTCAAAATTTTTTTCGAAAGAGTT
TTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAAAGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGCGCAC
ACCCCGCGCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCAGTCAGGTTCTCTGACTGGGAAT
GAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGTGCGCTCAGCCTGCCAGAGGGCGG
GGATACGTAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCGGCTCGATCCATCTGT
Found at i:16406936 original size:889 final size:888
Alignment explanation
Indices: 16405211--16409901 Score: 5855
Period size: 889 Copynumber: 5.3 Consensus size: 888
16405201 CCGGTTCGAT
* * * * **
16405211 CTTAGATTGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAATGAGCGTGCGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAA-CCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16405276 CGGCCAGAGCGGCGGGATGCGTATGTCGGGGATC-AGCTGGGTCCCCTTCTGCGTACTGTCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
16405340 CTGCTTCCACAACCCTCGACCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAG-CG
129 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** * *
16405404 AACTGACGAAATGGGTGGGCGAGCGAGCGGGCACTTTGCCGGCCAGAGAGGCGGGATGCGTAAGC
194 AAC-GACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGC
*
16405469 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCCATGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
16405534 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACG
323 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* *
16405599 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTTAAATTTTTT
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAG-GATTTTTTAAAATTTTTT
* * ** * *
16405663 TAGAAGG-GTTTTGGCCCCAAATTTCATAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAA
452 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * * *
16405727 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAATTTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTC
16405792 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16405857 CTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * *
16405922 CATGTGCGCACACCCCCTGG-CTAACCCTGATCG-TCGGAACCCCAATGCCG-TCGGTCAAGTTG
712 CATGTGCGCACACCCCCCGGTC-CCCCCCG-TCGCT-GGAACCCCAATGCCGCT-GGTCAGGTTC
* ** * *
16405984 TCAGGCGATGGTG-CCCAGGAC-AAGAAAAATGC-AGTGCCAGCACATGCCCGGGCCCAGCATGT
773 TCAGACGATGGTGTCCC-GG-CGAAGAAAAATGCGA-CACCAGCACATGCTCGAGCCCAGCATGT
* * * *
16406046 GCTTCCGTAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTGTG
835 GCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16406100 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAAGGCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAA-CCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
16406165 CGGCCAGAGGGGCGAGATGCGTAAGTCGAGGATCGATCGGGTCCCCCTTTGCGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
16406230 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGTACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16406295 ACGACAAAACGAGCGGGCGGGCGGGCGGGGACTACGTCGGCCAAAGAGGCGGGATGCCCAAGTCG
195 ACGACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
* ****
16406360 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGGCGCCAATGCCATTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
16406425 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
325 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
16406490 TCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTGAAAATTTTTTCAG
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAG
* * * *
16406555 AAGGAGTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAACAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * * *
16406620 TTAAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGA
* * *
16406685 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTGTTTAAAGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
16406750 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
16406815 GTGCGCACACCCCCCGGTCCCCCCCGTCGCTGGAACGCCAATGTCGCTAGTCAGGTTCTCCGACG
715 GTGCGCACACCCCCCGGTCCCCCCCGTCGCTGGAACCCCAATGCCGCTGGTCAGGTTCTCAGACG
* * * *
16406880 ATGGTGTCCCGGTGATGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGT-CGCA
780 ATGGTGTCCCGGCGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCT-TCCGCA
* * *
16406944 ACCCTCGGTTCGGTTCGATCTCAGACTGGGAATGAACTCCGTATG
844 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16406989 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAGGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACC-ACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
16407054 CAGCCAGAGGGGTGGGATGCGCGAGCCGGGGATTG-GCTGGGTCCCCCTCTGCATGCTGTCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
16407118 TTACTACCGCAACTCTC-AGTTCGGT-TCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGC
129 CTGCTGCCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * ** *
16407181 TAATCGACAAAATGGACGGGC-GGC---CGGGCACTACGCTGGCCCGAGAGGTC-AGATGCGCAA
192 CAAACGACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGG-CGGGATGCGCAA
* * * **
16407241 GCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTTTGCTGTGCCAATGCC
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
16407306 ATTTTTCTAGCTTCTAAATTCATACAATGGTACCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
321 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
16407371 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAAATTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTT
* * *
16407436 TCAGAAGGATTTTTGGCTCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
451 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AA
* **
16407501 AAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATT
*
16407566 TCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16407630 AGTTCTTGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16407695 ATCATGTGCGCACACCCCCCGGTCCCTCCCATCG-TCGGAACCCTAATGCCGCTGGTCAGGTTCT
710 ATCATGTGCGCACACCCCCCGGTCCCCCCCGTCGCT-GGAACCCCAATGCCGCTGGTCAGGTTCT
* *
16407759 CAGATGATGGTGTCCCGGCGAAAAAAAATGC-AGCACCAGCACATGCTCGAGCCCAGCATGTGCT
774 CAGACGATGGTGTCCCGGCGAAGAAAAATGCGA-CACCAGCACATGCTCGAGCCCAGCATGTGCT
* * *
16407823 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATG
838 TCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
16407874 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAGCCCAAGAAGCGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCA-ACCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
16407939 CGACGGGAGGGGCGGGATGCGCAAG-CTGGGGATCGGTCGGGACCCCCTCTGCGTACTGTCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGTC-GAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
16408003 CTGTTACCGCAACCTTC-AGTCTGGTCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
16408067 AATCGACGAAACGGGCGGGCGGGCGGACGGGCACTACGCCGGTCAAAGAGACGGGATGCCCAAGC
193 AAACGACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGC
*
16408132 CGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
16408197 TTTTCTGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
323 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * **
16408262 ACTCATTTTTTATTTTTGACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTC
** * * *
16408327 AGAAGGAGTTTTGGAACCAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
453 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * * *
16408392 AATTCAGCCAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCATATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
* *
16408457 GACACTTTAATGGCTACTGACAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
16408522 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
16408587 ATGTCCGCACAGCCCCCC-GT-CCCCCCATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCG
713 ATGTGCGCACA-CCCCCCGGTCCCCCCCGTCGCTGGAACCCCAATGCCGCTGGTCAGGTTCTCAG
** * * *
16408650 GTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGT-C
777 ACGATGGTGTCCCGGCGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCT-TCC
*
16408714 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
16408762 C-----C------T-AA----G--T--C-AA--C--CCATGAAATGAGCGTGCGGGCGCTCAGTT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * * *
16408802 GACCAGAGGGGCAAGATGCGAAAGTCGAGGATCGATCAGGTCCCTCTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * * *
16408867 GCAGCCGCAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCAC
131 GCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCA-
* * * * * *
16408932 CAACGA-ATCAAGCGGGCGGACGGGTGTGTGGGCAGGCACTACGCCGACCAAAGAGGTGGGATGC
194 -AACGACA--AAACGGGCGG--GCG-G-GCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGC
* * *
16408996 GCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCAATGCCAA
252 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
16409061 TGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGC
317 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* *
16409126 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTGTTAAAA
382 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAG-GATTT-TTTAAA
*
16409190 ATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTATTTTGGCAT
445 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTTGGCAT
* * *
16409254 GCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTC
509 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
16409319 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGG
574 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
16409384 GGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
639 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * **
16409449 TCGCACATCATGTGTGCAAACCACCCCCC-G-CCCCCCCGATCGCCGGAACCCCTATGCCTCCAG
704 TCGCACATCATGTGCGC--A-CACCCCCCGGTCCCCCCCG-TCGCTGGAACCCCAATGCCGCTGG
* * * * * *
16409512 TCAGGTTCTCTGACGATGGTATCCCGACGAAGAAAAATGCGGCCCCAACACATGCTCGAGCCCAG
765 TCAGGTTCTCAGACGATGGTGTCCCGGCGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAG
* * * * **
16409577 CATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTATATG
830 CATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16409636 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG-GACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAA-CCACGAAACGAGCGTG-CGGGCGCTCAG
* * * * * *
16409700 CCGGCCAAAGGGGCGGGATGCACAAGCCGAGGGTCGGTCGGGTACCCCTCTGCGTGCTGTCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * ** * ** *
16409765 CTACTGCCGCAACTCTCGGTTTGGTCTGATGTTAGAGAGGGAATGAACTCCATATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * * *
16409830 ACCGATGAATCGAGCGGGCAGGCGGGTGGGCACTA-GCCGGCCAGAGAGGCGTGATGCGCAAGCC
194 AACGACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCC
16409894 GTGGATCG
259 GTGGATCG
16409902 GTTGGGTCCC
Statistics
Matches: 3299, Mismatches: 421, Indels: 162
0.85 0.11 0.04
Matches are distributed among these distances:
862 122 0.04
863 4 0.00
865 4 0.00
866 9 0.00
867 2 0.00
868 3 0.00
869 3 0.00
870 241 0.07
871 216 0.07
872 1 0.00
873 14 0.00
874 132 0.04
876 2 0.00
877 1 0.00
879 1 0.00
883 1 0.00
884 3 0.00
885 691 0.21
886 89 0.03
888 226 0.07
889 1063 0.32
890 278 0.08
891 33 0.01
892 12 0.00
893 1 0.00
894 2 0.00
895 2 0.00
896 8 0.00
897 5 0.00
899 4 0.00
900 126 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAA
CGACAAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGTCCCCCCCGTCGCTGGAACCCCAATGCCGCTGGTCAGGTTCTCAGACGA
TGGTGTCCCGGCGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTTCCGCAAC
CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16407002 original size:26 final size:26
Alignment explanation
Indices: 16406966--16407015 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16406956 GTTCGATCTC
16406966 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
16406992 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
16407016 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:16407877 original size:26 final size:26
Alignment explanation
Indices: 16407848--16407900 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16407838 CCAGTCCGAT
16407848 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16407874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16407900 C
1 C
16407901 CTAAGTTAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16409661 original size:26 final size:26
Alignment explanation
Indices: 16409610--16409662 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16409600 CCGGTCCAAT
* * *
16409610 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16409636 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16409662 C
1 C
16409663 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16409975 original size:166 final size:165
Alignment explanation
Indices: 16409636--16410068 Score: 436
Period size: 166 Copynumber: 2.6 Consensus size: 165
16409626 ACTCTATATG
* * * * *
16409636 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GG-A--C-GGGCGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAATCGAGCGGGCAGGCGGGGGGC
* * * * * * *
16409696 TC-AGCCGGCCAAAGGGGCGGGATGCACAAGCCGAGGGTCGGTCGGGTACCCCTCTGCGTGCTGT
66 ACTAGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGGTCGGGTACCCCTCTACGTGCTCT
* * **
16409760 CGATCCTACTGCCGCAACTCTCGGTTTGGTCTGAT
131 CGATCCTACTGCCGCAACCCTCGATTTGGTCCAAT
* ** * *
16409795 GTTAGAGAGGGAATGAACTCCATATGCCTAAGCCAACCGATGAATCGAGCGGGCAGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAATCGAGCGGGCAGGCGGG-GGG
* * * *
16409860 CACTAGCCGGCCAGAGAGGCGTGATGCGCAAGCCGTGGATCGGTTGGGT-CCCTCTCTATGTGCT
65 CACTAGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGGTCGGGTACCC-CTCTACGTGCT
*
16409924 ACT-GATCCTACTGCCGTAACCCTC-ATTCTGGTCCAAT
129 -CTCGATCCTACTGCCGCAACCCTCGATT-TGGTCCAAT
* * * * *
16409961 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCC-ACCAACGAATCGAACGGGCGGGCGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCAATGAATCGAGCGGGCAGGCGGG-GG
* *
16410025 GCACTATGCCAGCCAGAGAGGTGGGATGCACAAGCCGTGGATCG
64 GCACTA-GCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCG
16410069 ATAGCGTGGT
Statistics
Matches: 223, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
159 42 0.19
160 2 0.01
161 1 0.00
163 1 0.00
164 2 0.01
165 9 0.04
166 130 0.58
167 36 0.16
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.19
Consensus pattern (165 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAATCGAGCGGGCAGGCGGGGGGC
ACTAGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGGTCGGGTACCCCTCTACGTGCTCT
CGATCCTACTGCCGCAACCCTCGATTTGGTCCAAT
Found at i:16410700 original size:26 final size:26
Alignment explanation
Indices: 16410664--16410716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16410654 CCAGTTCGAT
*
16410664 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
16410690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
16410716 C
1 C
16410717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:16411797 original size:158 final size:157
Alignment explanation
Indices: 16411531--16411894 Score: 638
Period size: 158 Copynumber: 2.3 Consensus size: 157
16411521 CAGTCCGATT
16411531 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGCACTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTCCAGGCACTTAGCC
*
16411596 GGCCAGAGGGGCGAGATGGCAAGCCGAGGATAGGCTGGGTACCCCTCTGCGTGCTGTCGATCCTG
65 GGCCAGAGGGGCGAGATGACAAGCCGAGGATAGGCTGGGTACCCCTCTGCGTGCTGTCGATCCTG
16411661 CTACCACAACCCTTGGTCTGGTCTGATC
130 CTACCACAACCCTTGGTCTGGTCTGATC
* * ** *
16411689 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAGCCACGAAATGAGCGTCTGGGCTCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTCCAGGCACTTAGCC
16411754 GGCCAGAGGGGCGAGATGACAAGCCGAGGATAGGCTGGGTACCCCTCTGCGTGCTGTCGATCCTG
65 GGCCAGAGGGGCGAGATGACAAGCCGAGGATAGGCTGGGTACCCCTCTGCGTGCTGTCGATCCTG
16411819 CTACCACAACCCTTGGTCTGGTCTGATC
130 CTACCACAACCCTTGGTCTGGTCTGATC
*
16411847 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-ACGAAACGAG
16411895 TGGGTGCGCG
Statistics
Matches: 195, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
157 2 0.01
158 193 0.99
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTCCAGGCACTTAGCCG
GCCAGAGGGGCGAGATGACAAGCCGAGGATAGGCTGGGTACCCCTCTGCGTGCTGTCGATCCTGC
TACCACAACCCTTGGTCTGGTCTGATC
Found at i:16412589 original size:26 final size:26
Alignment explanation
Indices: 16412549--16412601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16412539 CTGGTCTGAT
*
16412549 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACACCATATG
* *
16412575 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCATATG
16412601 C
1 C
16412602 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCATATG
Found at i:16413141 original size:26 final size:26
Alignment explanation
Indices: 16413090--16413142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16413080 CCAATCCGAT
*
16413090 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16413116 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16413142 C
1 C
16413143 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16414013 original size:26 final size:26
Alignment explanation
Indices: 16413984--16414036 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16413974 CTGGTCCGAT
16413984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16414010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16414036 C
1 C
16414037 CGAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16417489 original size:26 final size:26
Alignment explanation
Indices: 16417460--16417564 Score: 201
Period size: 26 Copynumber: 4.0 Consensus size: 26
16417450 CTGGTCTGAT
16417460 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16417486 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16417512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16417538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16417564 C
1 C
16417565 CTAAGTCAAC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16418432 original size:26 final size:26
Alignment explanation
Indices: 16418403--16418455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418393 CCGGTCTGAT
*
16418403 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16418429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16418455 C
1 C
16418456 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16419327 original size:26 final size:26
Alignment explanation
Indices: 16419291--16419343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419281 CCGGTCCGAT
* *
16419291 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16419317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16419343 C
1 C
16419344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16419760 original size:890 final size:889
Alignment explanation
Indices: 16417512--16424612 Score: 9868
Period size: 890 Copynumber: 8.0 Consensus size: 889
16417502 ACTCCGTATG
16417512 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * *
16417577 ATGAAACGAGTGTGCGTACGCTCAGTCGGCCAGAGGGGTGGGATGCTCAAG-CTGGGGATCGG-C
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGTC
* * * * ** ** * * *
16417640 TGAGTCCCCCTCTGTATGCTACCGATCCTACTATCGCAACCCTCATTCTGGTCCAATCTCAGACT
130 -GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* ** * *
16417705 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTAGGCCGGCACTACGT
194 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGC
* * *
16417770 CGGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCT
259 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
16417835 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTCCCTTAAGCC
324 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
16417900 TTCATGTGAAGTTTCATGGCACGAGGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT
389 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * *
16417965 TGTT-TAGGATTTTTGTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
454 AGTTCGA-GATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCC
* * * * *
16418029 TTGTATTCTTGTTGGCATGCATAAAATAATTCAACTAAAAACTCGAAGTGTATAAGATTTTGTGA
518 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
16418094 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATC
583 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
16418159 TCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
648 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
16418224 GCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCCGGCACCCCCGTTCGTCGGA
713 GCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCCGATCGTCGGA
* * * * * * **
16418289 ACCCCAATGCCACCGGTTAGGTTCTCCGACAATGGTGTCTCGGCGAAAAAAAATACGGCACCAGC
776 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGC
* **
16418354 ACATGCCCGAGCCCAGCATGTACTGTCACAACCCTCAGA-CCGGTCTGAT
841 ACATGCCCGAGCCCAGCATGTGCTCCCACAACCCTC-GATCCGGTCTGAT
* *
16418403 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
16418468 ATGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGTGGGATCCGCAAGTC-GGGATCGGTCG
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
** * * * * * * *
16418532 GGTCCTTCTCTGCGTGCTGCCGATCCTACTGCTGCAAACCTCGATCTGGTTCGATCTTAGACTGG
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * ** * * *
16418597 CAATGAACTCCGTATGCCTAAGCCAATCGATTAAACGAGCGGGCGGACAGGCGGGCACTACGCCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
* *
16418662 GCCAGAGAGGTGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
261 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16418727 ATATTTCTGCCTTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
326 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
16418792 CATGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTTACAATTTTTGAAACTTTTTACAG
391 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
* *
16418857 TTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
456 TTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
*
16418922 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAA
521 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16418987 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
586 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
16419052 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
651 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
16419117 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCAATCATCGGAACGCC
716 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * *
16419182 AATGCCGTCGGTCACGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGACACCAGCACATG
781 AATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATG
* *
16419247 CCCGAGCCCGGCATGTGCTCCCACAACCCTCGATCCGGTCCGAT
846 CCCGAGCCCAGCATGTGCTCCCACAACCCTCGATCCGGTCTGAT
* *
16419291 CTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * ** * *
16419356 ATGAAACGAGCGTGCGGGCACTCAGTCAACCAGTGGGGCAAGATGCGGAAGTCGGGTATCGGTCG
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
* * * **
16419421 GGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTAC
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
16419486 GAATGAACTCCGTATGTCTAAGCCAACCGATGAAATGAGCGGATGGGCGGGCGGGCACTATGCCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
*
16419551 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
261 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16419616 ATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
326 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
16419681 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACAG
391 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
* *
16419746 TTCAAGATTTTTTTAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
456 TTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
* *
16419811 TATTTTTGCTGGCATGCACAAAACAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
521 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16419876 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
586 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
16419941 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATAGAAGAGCC
651 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
16420006 AAGTACCAGCACCCATCGTACATCATGTGCGCACACTCCCCCGGCCCCCCCTCGATCGCCGGAAC
716 AAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCC-CGATCGTCGGAAC
* * * * *
16420071 CCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGTCTCGATGAAGAAAAATATGCCACCAGCAC
778 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCAC
* * *
16420136 ATCCCCGAGCCTAGCATGTGCTGCCC-CAA--CT---T----TC-GGT
843 ATGCCCGAGCCCAGCATGTGCT-CCCACAACCCTCGATCCGGTCTGAT
* *
16420173 C-----C-------G-A-TCCG-AT-CTTAGACTGGGAATTAACT-CGTGTGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * **
16420221 ATGAAACGAGCGTGCGGGTGCTAAGTCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGACCG
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
* * * * * *
16420286 GGTCCCTCTCTGCATGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGATCCGATCTTACACTGG
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
16420351 GAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCTGG-CGGGCGGGCCGGCAATATGTC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCGGGCACTACGCC
* * * *
16420415 GGTCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATATT
260 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
16420480 CATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCT
325 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
16420545 TCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACT
390 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
* * *
16420610 GTTTGGGATTTTTGTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA-TGTGATCCT
455 GTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACT-TGATCCT
** *
16420674 TGTGCTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
519 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
16420739 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
584 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
16420804 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
649 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
16420869 CCAAGTACCAGCACCCATCGCACATCATGTGCGTACAGCCCCCCCGGCACCCCC-ATTCGCCGGA
714 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGA-TCGTCGGA
* * * *
16420933 ACCCCAATACCGCCTGTCAGGTTCTCCGACGATGGTGTCTC-AGTGAAGAAAAATGTGGCACCAG
776 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGA-CGAAGAAAAATGTGGCACCAG
** *
16420997 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGA-CCGGTCTGAT
840 CACATGCCCGAGCCCAGCATGTGCTCCCACAACCCTC-GATCCGGTCTGAT
* * *
16421047 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACTC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * * * *
16421112 ACGAAACGAGCGTGCGAACGCTCAGCCGGCCAGAGGGGTGGGATCCGTAAGTCGGGGATCGGTCG
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
* ** * * * *
16421177 GGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCATAACCCTCGATCTGGTTCGATCTTAGATTGG
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * *
16421242 GAATGAACTCCGTATGCCTAAGCCAATCGACTAAACGAGCGGGCGGACGGGCGGGCACTACGCCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
* * * *
16421307 GCCTGAGAGGTGGGATGCGCAAACTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
261 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16421372 ATATTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
326 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
16421437 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTAAAG
391 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
* *
16421502 TTCGAGA-TTTTTTAAATTTTTTTCAAAAAGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTT
456 TTCGAGATTTTTTTAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTT
16421566 GTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
520 GTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
16421631 ATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
585 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
16421696 AAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGC
650 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
16421761 CAAGTACTAGCACCCATCGCACATCATGTGCGCAGACCCCCCCGGCCCCCCCAATCGTCGGAACC
715 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACC
* * * * *
16421826 CCAATGCCACCGGTCACGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGACACCAACACA
779 CCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACA
* * *
16421891 TGCCCGAGCCCGGCATGTGCTCCCACAACCCTCGATCCAGTCCGAT
844 TGCCCGAGCCCAGCATGTGCTCCCACAACCCTCGATCCGGTCTGAT
* *
16421937 CTTAGACTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCT
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
16422002 ATGAAACGAGCGTGCGGGTGCTTAGCCGGTCAGAGGGGCGAGATGCGCAAG-CAGGGGATCGATC
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGTC
* * * * * * *
16422066 GGGTCCCCCTCTACATGTTGCCGATCCTGCTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTA
130 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* ** * * * * *
16422131 GCAATGAACTTTGTATGCCTAAGTCAACCGACGAAACGAGCGGACGTGTGGACGGGCACTACGTC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCC
* * * * *
16422196 GGCCAAAGAGGCGAGATGCGAAAGCCGTGGATCGATAGGGAGGTACGTGGGTTTAGGCACATCTT
260 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
16422261 CATATTTCTGCCATGCCAATGCCATTTTTCTTGCTTGTAAATTCATACAATGGTCACTTAAGCCT
325 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* ** *
16422326 TCATGCGAAGTTTCATGGTGAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
390 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
* * * *
16422391 GTTCAAGATTTTTTTAAATTGTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTT
455 GTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTT
** *
16422456 GTATTTTTGTTCACATGCACAAATA-AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
520 GTATTTTTGTTGGCATGCACAAA-ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
16422520 CATTTGAAAAAAGTG-CCCCGTTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
584 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
16422584 GAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
649 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
16422649 CCAAGTAGCAGCACCCATCGCACATCATGTGCGTACA-CCCCCGGCCCTCCCCGATCGTCGGAAC
714 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCCGATCGTCGGAAC
* * * * *
16422713 CCCAATACCGCCGGTCAGGTTCTCCTG-CAATGGTGTCCTGATGAAGAAAAATGCGGCACCAGCA
778 CCCAATGCCGCCGGTCAGGTTCTCC-GACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCA
* ** * *
16422777 CATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTTTGAT
842 CATGCCCGAGCCCAGCATGTGCTCCCACAACCCTCGATCCGGTCTGAT
* * *
16422825 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * **
16422890 ATGGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATTAGTCG
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
** * * * * * * * * *
16422955 GGTCCCTTTTTGTATGTTGTCGATCCTGTTGTCGTAACCTTCGGTCCGATCCGATCTTAGACTGG
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
16423020 GAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGCGGA----CGGGCGGGCACTACGCCA
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
* *
16423081 GCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTC
261 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16423146 ATATTTCTGCCTTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
326 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * ** *
16423211 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGGTTTTCAAAACTTTTTACGG
391 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
* * * * * **
16423276 TTCGGGAATTTTTAAAATTTATTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGGGATCCTTG
456 TTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
* * *
16423341 TATTTTTATTGGCATGCACAAAA-AACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGATC
521 TATTTTTGTTGGCATGCACAAAACAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
16423405 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTC
585 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
16423470 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
650 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
16423535 TAACTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTGGCCCCCCCGGATCGTTGGAACC
715 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC-GATCGTCGGAACC
* *
16423600 CCAATGCCGTCGGTCAGG-T-T----C-------T-CCGACGAAGAAAAATGCGGCACCAGCACA
779 CCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACA
* * * * * * *
16423651 TGCTCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGAT
844 TGCCCGAGCCCAGCATGTGCTCCCACAACCCTCGATCCGGTCTGAT
* * *
16423697 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATTAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * * * *
16423762 ACGAAACGAGCGTGCGAGTGCTTAGCCGGTCAGATGGGTGAGATGCGCAAG-CTGGAGATCGATC
66 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGTC
* * * * * * * ** *
16423826 GGGTCCCCCTCTACGTGCTGTCGATCTTGCTGCTGCAACCCTTGGTCCGATCTAATCTTAGACTA
130 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
** * ** * * *
16423891 GGAATGAACTTTGTATGCCTAGGCCAACCGACGAAACGAGCGGGTGGGCGAGCGGGCACTACACT
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCC
* * *
16423956 AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTT
260 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
16424021 CAAATTTTTGCCATGCCACTGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
325 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
16424086 TCATGTGATGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGAGTTTTGAAACTTTTTACG
390 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
* *
16424151 GTTCGAGATTTTTTTAAATTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
455 GTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTT
* * * *
16424216 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAATTGCACAAGATTTTGTGACC
520 GTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
16424281 ATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTC
585 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
16424346 AAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGAC
650 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
16424411 CAAGTACCAGCACCCATCACAGATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAACCC
715 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
* * * *
16424476 AAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCTGGCGAAGAAAAATATGGCACCAGCACAT
780 CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACAT
* ** * *
16424541 GCCTGAGCCCAGCATGTGCT-GTAGCAACCCTCGGTCCGATCTGAT
845 GCCCGAGCCCAGCATGTGCTCCCA-CAACCCTCGATCCGGTCTGAT
16424586 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16424613 CTAAGCCAAC
Statistics
Matches: 5513, Mismatches: 616, Indels: 164
0.88 0.10 0.03
Matches are distributed among these distances:
863 3 0.00
864 93 0.02
865 641 0.12
866 29 0.01
867 3 0.00
868 3 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 260 0.05
873 3 0.00
874 3 0.00
875 27 0.00
876 478 0.09
877 4 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 3 0.00
883 5 0.00
884 319 0.06
885 148 0.03
886 38 0.01
887 14 0.00
888 534 0.10
889 820 0.15
890 1237 0.22
891 749 0.14
892 90 0.02
893 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
TTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTG
TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
AATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTCCCACAACCCTCGATCCGGTCTGAT
Found at i:16421085 original size:26 final size:26
Alignment explanation
Indices: 16421047--16421099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421037 CCGGTCTGAT
* *
16421047 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16421073 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16421099 C
1 C
16421100 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16421966 original size:26 final size:26
Alignment explanation
Indices: 16421937--16421989 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421927 CCAGTCCGAT
*
16421937 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16421963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16421989 C
1 C
16421990 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16422876 original size:26 final size:26
Alignment explanation
Indices: 16422825--16422877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16422815 CCGGTTTGAT
*
16422825 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16422851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16422877 C
1 C
16422878 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16423735 original size:26 final size:26
Alignment explanation
Indices: 16423697--16423749 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16423687 CCAGTCCGAT
* *
16423697 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16423723 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16423749 C
1 C
16423750 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16426191 original size:26 final size:25
Alignment explanation
Indices: 16426141--16426192 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16426131 CCGGTCTGAT
**
16426141 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCATATG
16426166 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCATATG
16426192 C
1 C
16426193 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:16427271 original size:4 final size:4
Alignment explanation
Indices: 16427262--16427287 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
16427252 GACGAAATGA
16427262 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
16427288 ACTACGCCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:16427605 original size:897 final size:891
Alignment explanation
Indices: 16425284--16452652 Score: 16904
Period size: 888 Copynumber: 30.7 Consensus size: 891
16425274 CCGGTCCAAT
* * * ** * * * *
16425284 CTTAGACTAGGAATGAACGCCGTACGCCTAAGTCAACCCACAAAACAAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16425349 CAGTCAGAGGGGCGGGATGCGCAAGCTGGGGATCG-GTCGGGTCCCCCTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* * * * * *
16425413 CTGCTACCGCAACCCTCTGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTATGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * *
16425478 ACCGAC-AAA---------GTGAGTAGGCAGGCACTACGTCGACCAGAGACGCGGGATGCGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
16425533 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGGCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * * *
16425598 TTTTTCTGGCTTGCAAATTCATACAATGGTTCCTTAAGCTTTCATGTGAAGTTTCATGGCAAGAT
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * *
16425663 GGCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTGTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
*
16425728 CAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16425793 AAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16425858 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATTTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
16425923 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
16425988 CATGTGCGCACACCTCCCCCGGCCCCCCCAATCGTCGGAATCCCAATGTCGTCGATCAGGTTCTC
715 CATGTGCGCACA-C-CCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * * * *
16426053 CGGCCATGGTGTCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGTCCAACATGTGCTGC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * *
16426118 CGCAACCCTCGGTCCGGTCTGATCTTAGACTG-GAATGAACTCTGTATG
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16426166 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
16426231 CGACCAGAGGGGCGGGATGCATAACCCGAGGATCG-GTCGGGTCCCCCTTTGCATGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* * * ** *
16426295 TTGCTGCCGCAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATAAACTTTGTATGCCTAAACC
130 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
16426359 AACCGATGAAA-G-GAGCGGACGGGCGGGCGGGTACTACGCCGGCCAGAGAGGCGGGATGCGCAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* *
16426422 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
16426487 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCATGAGAAGTTTTATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
16426552 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTATTTGCGGTTTGGGATTTTTT-AAATATTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAAT-TTT
* * * *
16426616 TTCAGAACGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
453 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16426681 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16426746 T-AGGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGT
583 TCA-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
16426810 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * ** *
16426875 CATCATTTGCGCACACCCCCCGGCCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTC
712 CATCATGTGCGCACACCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTC
** ** * * *
16426940 TCCGGTGATGGTGTATCGATAAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCT
776 TCCGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * * *
16427005 GCTGCAACCCTCGATTCGGTTTGATCTTAGAGTGAGAATGAACTCCGTATG
841 ACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * * *
16427056 CCTAGACTGGGAATGAACTTCATATGCCTAAGTCAATCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16427121 CGGCC-TAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * *** *
16427185 TACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTATTAATAAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
16427250 CCGACGAAATGAGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGC
196 CCGACG-AA--A-C--GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * *
16427315 GCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGTCGTGCCAA
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
*
16427380 TGCCATTTTT-TCGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
320 TGCCATTTTTCT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * *
16427444 CAAGACGACTCGTTTTTTATTTTTTACGATTTTCAAAACTTTTTACGGTTTGGGGTTTTTTAAAA
384 CAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAA
* * * * ** * *
16427509 TCTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGCAGACGTGATCCTTACATTTTTTTTGGAATGC
449 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
16427574 ATAAAAACAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTAC
514 ACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
16427638 CTATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
578 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
16427703 GTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCAT
643 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
16427768 CGCACATCATGTGCGCACACCCCTCAGCCCTCCCCGATCGCCGTAACCCTAATGTCGTCGGTCAG
708 CGCACATCATGTGCGCACACCCCCCAGCCC-CCCCGATCGTCGCAACCCCAATGTCGTCGGTCAG
* * * *
16427833 ATTCTCCGATGATGGTGTCCCGACGAAGAAAAGTGCTGCACCAGCACATGCCCGAGCCCAGTATG
772 ATTCTCCGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATG
* * *
16427898 TGCTACCG-AACCACACGGTCCGGTCCGATCTTATACTGAGAATGAAATCCGTATG
837 TGCTACCGCAACC-CTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16427953 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACGAGCGTTCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * ** *
16428018 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTTGGGTCCCTCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
** ** *
16428083 TGCTATCGCAAAACTCTA-TCCGGTCTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** ** ** * *
16428147 ACCGACGAAA--CAAGCGACCGGGCGGGCGGGCACTACGTTGGTCAGAGAGGCGGGATACGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
*
16428210 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
16428275 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAGGTTTCATGGCTAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
16428340 GACTCGTTTTTTATTCTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
*
16428405 CAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16428470 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
16428535 AGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16428600 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** **
16428665 CATGTGCGCACACCCTTCAGCCCCCCCGATCG-CTGCAACCCCAATACCGTCGGTCAGATTCTCC
715 CATGTGCGCACACCCCCCAGCCCCCCCGATCGTC-GCAACCCCAATGTCGTCGGTCAGATTCTCC
* ** *
16428729 GACGATGGTGTCCCGGTGAAGAAAAGTGGGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACC
779 GACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
16428794 GCAACCCTCGGTTCGGTCCGATCTTATACTGAGAATGAAATTCGTGTG
844 GCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16428842 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
16428907 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGACT-GGTCCCCCTCTACATGCTACCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * **
16428971 TACTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTGA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16429036 CCGACGAAACGAC---CGGGCGGGCGGGAGGGCACTTA-GCTGGCCAGAGAGGCGGGATGCGCAA
196 CCGACGAAACG-CGGGCGGGCGGGCGGGCGGGCAC-TACGCCGGCCAGAGAGGCGGGATGCGCAA
* *
16429097 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCCATTCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
16429162 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
*
16429227 CGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * *
16429292 TCAGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATTCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
16429357 AAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCTATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16429422 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
16429487 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** *
16429552 TCATGTGCGCACACTCCTCAGCCCCCCCGAGCGTCGCAACCCCAATGTCGTCTTTCAGATTCTCT
714 TCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTCC
* * * *
16429617 GACGATGGTGTCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCTACC
779 GACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * * *
16429682 GTAACCCTCGG-TCTGATCTGATCTTATATTGAGAATGAAATTCGTATG
844 GCAACCCTCGGTTC-GGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16429730 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCTGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
16429795 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGA-TTGGTCCCCCTCTACTTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * *
16429859 TGCAGCCGCAACCCTCAGTCCGGTGTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16429924 CCAACGAAACGAC---CGGGCGGCCGGGAGGGCACTAAGCTGGCCAGAGAGGCGGGATGCGCAAG
196 CCGACGAAACG-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
*
16429986 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
16430051 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
** ** *
16430116 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCAGGAATTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * *
16430181 CAGAAGGATTTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTA-TTTTGATTGGCATGCACAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAA
* *
16430245 AAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
16430310 CAGATACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
16430375 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** ** * ** *
16430440 TCATGTGCGCACA-CCTCC--CCCCCTCGA-CGAAG-AA--AAAAT-T-GGC-ACCA-A--C-AC
714 TCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTCC
*** *** * * * * * * * * ***
16430491 -AC-A---TG-CCCGA-GCCCATCCTGTGCTGCAGCAAC-CCTCGGTCTG-GTCC-G-ATCTTAG
779 GACGATGGTGTCCCGATGAAGA-AAAGTGCAGCACCAGCACAT--GCCCGAGCCCAGCATGTGCT
* * ** * * * *
16430545 ACTGGGAA---T-GAACTCCGTATG--CTTAGACTGGGAATG-AA--C----G
841 AC-CGCAACCCTCG-GTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * ** *
16430585 C-----C---GTATG-----------CCTAAGTCAACCCATGAAACGAGCGTGCAAGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *** **
16430631 TGGCCAGAGGGGCAGGATACGTAAGTCGGGGATCG-GTCGGGTCCCCCTCTGGGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* * *
16430695 CTGCTGCCGCAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * * * *
16430759 AACTGAC-AAA-ACGAGCGTGCGGGCAAGCTGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
*
16430822 GCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
16430887 ATATTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
324 AT-TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * * *
16430951 ATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTCTACGGTTTGGGATTTTTTAAAATTTT
388 ACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* *
16431016 TTCAGAAGGAGTTTTGGTCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
453 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16431081 AATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16431146 TCAGACACTTTAATGGCTACTTGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16431211 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
16431276 ACCATGTGCG--CA-----GAGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTC
713 ATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * * * * *
16431334 CGGCGATGGTGTCCCGGTGAAGAAAAATACGGCATCAGCACATACCCGAG-CCAGCATGTGCTGC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * * * * * * *
16431398 CGCAACCCTCAGTTGGGTCCGATCCTAGACTGGGAATCAACTCCGCATG
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * *
16431447 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ***
16431512 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCCGGTCCCCCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* * * *
16431576 CTGCTGTCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCT
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** ** * ** * * *
16431641 ACTGACGAAA--CGAACGGGCGGGCAAGCGGGCACTAAGCCGATCAGAGAGCCGAGATGCCCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
16431704 CCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
16431769 TTTTTTTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** * **
16431834 GACTCGTTTTCTATTTTTCATC-ATTTTCGAAACTTTTTAGGGTTCCGGATTTTTTAAAATTTTT
390 GACTCGTTTTTTATTTTTCA-CGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* *
16431898 TCAGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTATATTTTTGTTGGCATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16431963 GAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
16432027 TAGACACTTTAATGGCTAATGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
16432091 GTTCTCAAGGTTTGATAAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
16432156 TAATGTGCGTACACCCCCCGGCCCCCCTTGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTC
714 TCATGTGCGCACACCCCCCAGCCCCCC-CGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * *
16432221 CGATGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTAC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
16432286 CGCAA-CC-C--TT--G---G-TC-----C---G---G---TCCG-AT-
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* **
16432309 CTTAGACTGGGAATGAACTCTATAT-CCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *** * **
16432373 CTGCCAGAAGGGCGGGATCCGTAATCC-AGGGATCGGCCAAGTCCCCCTCTGCGGGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACTGGGTCCCCCTCTACATGCTACCGATC
** * * * * * * *
16432437 CTATTGTCGTAACCATCGGTCCGGTCCGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * * * *
16432502 ACCGGTGAAA--TGAGCGGGCGGGCGGGCGGGCATTGCGTCGGTCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
16432565 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
***
16432630 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTGCGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * *
16432695 GACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTAGGGTTT-CGAATTTTTAAACATTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAA-ATTTTT
** **
16432759 TCAGAAGGAGTTTTGGCTACAAACTTCTTAG-CTGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAA
16432823 AAATAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16432887 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
16432952 GAGTTCTCCAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
16433017 CATCATGTGCGCACA-CCCCCAGCCCCCCCCGATTGTCGCAACCCCAAT-ACTGCCGGTCAGGTT
712 CATCATGTGCGCACACCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTC-GTCGGTCAGATT
* * * * *
16433080 CTCCGACGATGGTGTCCCGACGAAGAAAAATG-TGTTACCAGCACATGCCCGAGCCCAGCTTGTG
775 CTCCGACGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTG
* *
16433144 CTGCTGCAA----C-G--C--T-TG-----AT-CT--G---G---TCCG-AT-
839 CTACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * * * * * * *
16433171 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCACT-ATG
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-G
* * * ***** * ** *
16433235 CCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGA-TAGGGTGATTGGTGGGTTTAGGC-ACA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGT-CCCCCT--CTACATGCTAC-
* ** * * *** ** ** * **
16433298 TCTTCATATTTCTGCCGTGCCAATGCCATTTTTTTGG-CTTGTAAATTCATAC----AATGGTC-
125 -C--GATCCTGCTGCC--G-CAA--CCCTCAGTCCGGTC-TG-ATCTT-AGACTGGGAATGAACT
* * * *** * *** ** *** ** * ** **** * ** * *****
16433357 CCTTAAGCCT---TCATTTGAAGTTTC-ATGGAAAGATGACTCGTTTTCTATTTTGCATGATTTT
179 CCGTATGCCTAAGCCAACCGACGAAACGCGGGCGGGCGGGCGGGCGGGC-ACTACGC-CGGCCAG
* ** **** * *** ** *** ** * *** ** ** * * * ** *
16433418 TGAAACTTTTTAGGGTTTGCAATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAATTTAC
242 AGAGGCGGGAT-GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGG-CACATCTTCA-
** * **** * ***
16433483 TA-GACGTG--AT-CC-TTTTATTTTTGT-TGGCATGTATAAAAAAATTCAGCTA-AAAACTCAA
303 TATTTC-TGCCATGCCAATGCCATTTT-TCTGGC-T-TGT----AAATTCA--TACAATGGTC--
** ** * * *** **
16433541 TGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTTAGAC-ACT--TTAATGGCT
356 CCT-T--AAG--CCT-T---CATGTG----AAGT-T--TCATGGCAAGACGACTCGTT--T-TTT
* * * * * * * ** * * * * ** **
16433602 A-CTTGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
402 ATTTTTCA-C---GAT-T----T-TTAAA-ACT-TTTTACGGTTTGGGATTTTTTAAAATTTTTT
* ** ** * ** * * * **
16433666 --G-AGG-GATAGGGGGCCAATA-TTAGGGCCAAGTACCAGCACCCATTGCACATCATG-T-GC-
455 CAGAAGGAGTTTTGGCCCCAA-ACTT--GG--TAG-ACGTG-ATCC-TTGTA-TTTTTGTTGGCA
***** * * * ** * * * * *** * **
16433723 -GCAC--ACCCCCTC-CCGACCACCCCCGATCGTCGGAAGCCCA-ATGCCGCCGGTCAGGTTCTC
511 TGCACAAAAAAATTCAGCTA-AAAACTCGA-AGT--GTA--CAAGATTTTG-TGACCA--TT-T-
** ** * ** *** ** * * * *
16433783 CGACGATGGTGTCCCGA-TGAAGA-AAGATACA--GC-ACCAGCA-CAAGCCCG----AGCCCAA
565 -GAAAAAAGTGTCCCCATTTCAGACACTTTA-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*** *** ** * * ** * **
16433838 CATGTGCTGCCGGAACCCTTGGTCCGGTCCGATCTTAGACTGGAAATGAACTTTGTATGCTTAGA
628 -A--TGCT-CTTTAA--GGGGGT---GTGAGTTC-TCGA--GG-TTTG-A---TG-AGGGATAG-
* * * * * * * *
16433903 CTGGG--AATAAATTACGTATGCCTAAGT--CA--ACCCA-CGAAACAAGCGTGCGGGCGCTCAA
674 -GGGGCCAAT--A-TAAG--GGCC-AAGTACCAGCACCCATCG-CAC-ATCAT--GTGCGCAC-A
* ** **** ** * ** ** * ** *
16433961 TCGGCCAGAGGGGCGGGAT-G-CGCAA-GCC---GGGGATCGGTC-GGGTCCCCCTCTGCATGCT
727 CCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCG-TCGGTCAGATTCTCCGAC-G-ATGGT
*** * * ** *** * ** * **
16434019 G--CCGATCCTG----CTGCCGCAACCCTCAATTCATTTTC-ATCTTAG-ACTG-G-GAATG-AA
788 GTCCCGATGAAGAAAAGTGCAGC-ACCAGC-A--CATGCCCGAGCCCAGCA-TGTGCTACCGCAA
* * * * * * *
16434073 --CTCCGTAT--GCCTAAGC-CA-AC--CG-ACGAAA--CG-A-G
848 CCCTCGGT-TCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
** * * * * * * ** * * * * *
16434105 CGTGCGGGC-GGGCACT-ACGCCGGCCAGAGAGGTGGGATACG-CAAGCCATGGATCGATAGGGT
1 C-T-TAGACTGGG-AATGA--AC-TCCATATACCT---A-A-GTCAACCCACGAAACG--AGCGT
* * * * ** * *** ** * * ***
16434167 GGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATAC-CAATGCC-A--TTTTTCT--GT-
53 -G-CGG-GCGCTCA-GC-CGGC--CAGAGGGGC-GGGATGCGCAA-GCCGAGGATCGACTGGGTC
* * * * * * ** * ** ** *
16434224 --CTTCTAAATTC-A-C-A-CAATGGTCCCTTAAGCCTTCA-T---G--TGAAGTTTCA-TGGCA
109 CCCCTCTACATGCTACCGATC-CTGCTGCCGCAA-CCCTCAGTCCGGTCTGATCTTAGACTGGGA
** *** **** * ***** * *********
16434276 A-GATGACT-CGT-TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
172 ATGA--ACTCCGTATGCCTA--AGCCA--ACCGACGAAAC-GCGGGCGG-GCGGGCGGGCGGGCA
* ***** * ***** * * * * * ** * ***
16434338 ATATTTTTAG-AAG-GATTTTTTGAT-C-CAA-ACTTGG-TAGA-CGTGATCCT-TGTATTTTTA
229 CTA-CGCCGGCCAGAGA-GGCGGGATGCGCAAGCCGTGGATCGATAG-GGTGGTAGGTGGGTTTA
*** * * * * ** * * * * *
16434395 TTGGCATGCA-CAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAA
291 --GGCA--CATCTTCATATTTCTGC--CATGC-C-AA-TG--CCA-TTTTTCTG-GC-TTGTAAA
* * * * * * *
16434458 ---A-A-AA-GTGTCCCCATTTCAGACACTTTA-AT-AA-CTAC-TGGC-AG-CAAAC-C---TG
342 TTCATACAATG-GT-CCC--TTAAG-C-CTTCATGTGAAGTTTCATGGCAAGAC-GACTCGTTTT
* ** * * ** * * ** * * * * ** *
16434507 TAAAATCTCA--AATGCT----C-TTTAAGGGGGTGTGA-GTTCT-AGA-GGTTTGATG-AGG-G
400 TTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCA-GAAGGAG
* ** ** * * *** * ** *
16434560 ATAGGGGGCCAATA-TAAGGGCCAAGTAC-TAGCA-CCATCACACATCATG-T-GCATACACCCC
464 TTTTGGCCCCAA-ACT--TGG--TAG-ACGT-G-ATCC-TTGTA-TTTTTGTTGGCATGCA----
********* ** * * * * * ** *
16434620 CCCGGCCCCCCCGATCGCCGAAAGC-CCAATGTCGT-CGGTCAGGTTCTCCGACAATGGTGTCCC
515 -CAAAAAAATTC-A--GCTAAAAACTCGAA-GT-GTAC---AAGATTTTGTGACCAT--T-T---
* * ** * * **
16434683 GACGAAGAGAAGTACGGCACCAGCACATGCTC-GA-AC-CCAGCAT-G-TGCT-GCCGCATCCCT
565 GA--AA-A-AAGT---G-TCC--C-CAT-TTCAGACACTTTA--ATGGCTACTGGCAGCAAACCT
* * ** ** * * * * *
16434742 CG----ATC-C-AGTCCGATC-TTAGACTGGGAATGA--ACATCGTATGCTT-A-GACTGGA-AA
616 -GTAAAATCTCAAAT--GCTCTTTA-AGGGGGTGTGAGTTC-TCG-AGGTTTGATGA-GGGATAG
* ** ** * * * * **
16434795 TGAACTCCGTAT----GCCTAAGT--CA--ACCCA-CGAAACGAGCGTGTGTGCGCTCAGCCGGC
674 GGGGC-CAATATAAGGGCC-AAGTACCAGCACCCATCG-CAC-ATC--ATGTGCGCACA-CCCCC
**** ** * * * ** * **
16434851 CAGAGAGGCGGGAT-G-CGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTT
732 CAG-CCCCCCCGATCGTCGCAA-CC-----CCAAT---GTCGTCGGTCAGATT-CTC-CGA-C--
* * * * *** * * * * * *
16434913 CAT-ATTTCTACC-ATGCCAATACCATTTTTCTGGCTTGTAAATTCA-TACAATGGTCCCTTAAC
782 GATGGTGTC--CCGATG--AAGA--A---AAGT-GC-AG--CA-CCAGCAC-AT-G-CCC-GAGC
* * ** ** ** ** * * * ***
16434975 CCATCATGTGAAGTTTCATGGCAA-GAT-GACTCATTTTTTAT-TT-TTCATGATTTTCGAAATT
829 CCAGCATGT---G-CT-ACCGCAACCCTCGGTTC-GGTCTGATCTTATAC-TGAGAAT-GAAA-T
*** *
16435036 TTTTACG
885 CCGTATG
* * *** * *** * *** ** ***
16435043 ATTCGAGATTTTTTAA--AATTTTTTTAGAAGGATTTTTTGCCC-C-AAACTTGGTAGACGTGAT
1 CTT--AGA-CTGGGAATGAA-CTCCATATACCTA-AGTCAACCCACGAAAC---G-AG-CGTG--
* * * *** *** * ****
16435104 CCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCA-A-AAACTCAATGTGTACAAGATTTT
54 -C----------G--GGC--GCTC--AGC----CGGCCAGAGGGGCGGGATGCG--CAAG-CCGA
* * * * * * * ** *
16435167 GTGA-CTATTTGTAAAAAGTGTCCCCAT-TTCA-GAC-ACTTTGATAGCTACTGGTAGCAAACCT
95 G-GATCGA-CTG------G-GTCCCCCTCTACATG-CTAC--CGAT-CCTGCT-GCCGCAACCCT
**** * ****** ** * * * * * ** ** *
16435228 -A-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTG-ATGAGGGATAGGGGG
146 CAGTCCGGTCT--GAT-CTTAGACTG--GGAATGA--ACTC-CG-TATGCCTAAGCCA-A-CCGA
* *** ** * *** ** * * ****** ** *
16435290 CCAACATAAGGGTCAAGTACCGGCACCCATCGCACATCATG-TGTGCACACCCCCCCGGGACCCC
200 CGAA-ACGCGGG-C--GGGCGGGCGGGC-GGGCAC-T-ACGCCG-GC-CAGAGAGGCGGGATGCG
* ** ** *
16435354 CAA-TCGTCGGATCGCAATGCCGACGGCCAGGTTCTCTGACG-ATGGTGTCCCGGTGAAGAAAAA
256 CAAGCCGT-GGATCG--AT----A--G---GG-----TG--GTA-GGTG----GGTTTAGGCACA
** * *** * * * * * ** *
16435417 TACGGCACCAACACATGCCCTAGCCCA-G-CA-TGTGCT-GC-TGCAACCCTCGAT-C--CGGTC
297 T-CTTCA-TATTTC-TGCCAT-GCCAATGCCATTTTTCTGGCTTGTAA-ATTC-ATACAATGGTC
* * ** * * * * ***
16435474 TGATCTT-AGACTGGGA-ATGAACTCTAT-ATGGTTAGACTGGGATTGAACTCCGTATACCTA--
356 ---CCTTAAGCCT-TCATGTGAAGT-T-TCATGG-CA-A----GA-CG-ACT-CGT-TTTTTATT
*** ** ***** ** * ***** ****** * *
16435534 AGCCAACCGA--TGAAACGAACAGGCGAGCGG-GAGGGCATTACGTCGGCCAGAGAGGCGGGATG
405 TTTC-A-CGATTTTTAA--AACTTTTTA-CGGTTTGGG-ATT--TTTTAAAATTTTTTC-AGAAG
* * *** *** * * * * **
16435596 CGCAAGCTGTGGCTCGTTAGGGTGGTAG--GTGGGT-TTTGGCACATCTTCATATTTCTACCATG
461 -G--AGTTTTGGC-CCCAAACTTGGTAGACGT-GATCCTT-G--TAT-TT--T-TGT-TGGCATG
* *** * ** * * * * * *
16435658 C-CAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGA--AGTT
513 CACAA---AAAAATTC-AGC-TAAAAACTC-GA-AGT-GT-AC--AAG-ATT-TTGTGACCA-TT
* *** * * * * *** **
16435720 TCACGGCAAGACGACCCGTTTTCAATTTTTCACA-ATTTTTGAAACTTTTTAC-GGTTC-GGGAA
564 TGA-AAAAAG-TGTCCC-----C-A--TTTCAGACA-CTTT--AA-TGGCTACTGG--CAGCAAA
* * * * * * ** * *
16435782 CTTTTAAAAATTTTTCAGAAAGAGT-TTTGGCCCCAAAATTGGTAGACGTGA-TCCTTGTATTTT
613 CCTGT-AAAA--TCTCA-AATG-CTCTTT--------AA--GG-GGGTGTGAGTTCTCG-A----
* * *** * **** * * ** *** * *
16435845 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG-ATTTTGTGA-CCATTTG
657 GGTTTG-ATG---AGGGATAGGGGGC-CAATA-T--AAG-GGCCAAGTA-CCAG-CACCCA-TCG
** * * *** * * **** * **
16435908 -A-AAAAAGTGTCTC-CA--TTTCAGACACTTTTAT-G--GCTACTGGCCACAAACCTGTAAAAT
710 CACATCATGTG-CGCACACCCCCCAGCCCCCCCGATCGTCGCAAC---CC-C-AA--TGT--CGT
* ** ** * * * ** *
16435965 C--TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAAG-GCCAATAT
765 CGGTCAGAT--TC--TCCGACGATG-GTG-TCCCGA----TGA--A-G-A-A-AAGTG-CAGCAC
* * * * ***
16436027 AAGGGC-CAAGTGCCAGTA-CCCATCGCACATAATG-T-GCGCACACCCCCTCCAGG--CCCCCT
813 CA--GCAC-A-TGCCCG-AGCCCA--G--CAT-GTGCTACCGCA-A--CCCT-C-GGTTCGGTCT
* * *** *** *
16436086 GATCGTCAAAAC-CCCAATGCCGTCCGTCAGGTT
863 GATC-T-TATACTGAGAATGAAATCCGT-A--TG
* * ** * ** ** * ** *
16436119 CTCCGACGACGGTGTCCCGGCAAAGAA--AAATTTGGC-AGCAG-CACATGCTCGAGCCCAGCAT
1 CT--TA-GAC--TG----GG-AATGAACTCCATATACCTA--AGTCA-ACCCACGAAACGAGC--
* * * ** * * ** *
16436180 GTGCTGCCGCAACCCTCAGTCTGGTCC-GATCTTAGACTGGGAAT--G-AACTCCGTATGCTTAG
51 GTGC-G--G--GCGCTCAG-CCGG-CCAGA---GGGGC-GGG-ATGCGCAA-GCCG-A-GGATCG
* * * * * * * ** ** ** ** * *
16436241 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTACTCAGCCGGCC
101 ACTGGG--T---CCCCCTCT-AC-ATG-CTA--C-CG-ATCCTGC-TGCCGCAAC-CCTCAGTCC
* * * * * ** * * * *
16436306 AGAGGGGCGAGATGCGTA-AGCTCGGG-ATCG-A-TCGGGT-TACCCTCTG-CATGCTGTCG-AT
152 ----GGTC-TGAT-CTTAGA-CT-GGGAAT-GAACTC-CGTAT-GCCTAAGCCA-ACCGACGAAA
*** ** *** ** * * ** ** * *
16436364 CTTGCTACCGTAACCCTCAGTTCGGTCCGATCTTA-GACTGGGAATGA-ACTCCGTATGC-CTAA
205 C--GCGGGCG-GGCGGGC-GGGCGG-GC-A-C-TACG-CCGGCCA-GAGAGGCGGGATGCGC-AA
* * ** * *
16436426 GCCAACCGATGAAACTAGCGGGCGGGCACTATGCCGGCCAGAG-AGGTGGG-AGATGTA-AGTCG
259 G----CCG-TG-GA-T------C--G-A-TA-G--GG--TG-GTAGGTGGGTTTAGGCACA-TC-
** ** * ** *
16436488 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAATTTCATATTTCGGCTGTGCCGATGCCATTT
299 T---TC-ATA---T--T---TCTG-CCATGC-CAATGCCAT-TTT--TCT-----G--G-C----
*
16436553 TTCTGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAC
335 -T-T-G--T--AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
16436618 TCGTCTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTAAAAAATTTTTCAG
393 TCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAG
* * * * * *
16436683 ATA-GAGTTCTGGGCCCAAA-TTGGCAGACATGATCCTTGTATTTTTGTAGGCATCCACAAAAAA
458 A-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
16436746 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAG
522 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16436811 ACACATTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
587 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
16436876 -TCGGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATAGCACATC
652 CTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** * * * * *
16436940 ATGTGCGCACACCCCCCGGCTCCCCCAATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGG
716 ATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTCCGA
* * ** * * *
16437005 CAATGGTGTCTCGGCGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCCAGTATGTGCTACCG
781 CGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * ** * * * * *
16437069 TAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATG
845 CAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* *
16437116 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
16437181 CAGCCAGAGGGGCGGGATGCGCAAGCCGACGATCGA-TCGGGTGTCCCTTTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* ** * * *
16437245 CTACAACCGCAACCCTC-GATCCGATCTGATGTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
16437309 AACAGATGAAA--CGAGCGGGCGGGCGGGCGGGAACTACGTCGGCCAGAGAGGCGGGATGCGCAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
*
16437372 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16437437 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * *
16437502 CGACTTGTTTTCTATTTTTCCCAATTTTTAAAACTTTTTACGGTTCGAGATTTTTT-AAATTTTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * * ** * *
16437566 TCAGAAAGAATTTTGGCCCCGAACTTCTTAGACGTGATCCTTGTATTTTTCTAGGCATGCA-AAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
16437630 ACAAATTCAGCTAAAAACTCAAACTGTACAAGATTTGGTTACCATTTGAAAAAAGTGTCCCCATT
519 A-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16437695 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGAGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16437759 AGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * * ** *
16437824 ATCATGTGCACACACTCCCCCGGTCCCCCTCGATCACCGAAACCCCAATGCCACCGGTCAGGTTC
713 ATCATGTGCGCACAC-CCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTC
* * * * * * * *
16437889 TCCGACGATGGTGTCTCGAGGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGAGCT
776 TCCGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
16437954 GCCGCAA-CC-C---TC-G---G-TC-----C-------G--ATCCG-AT-
841 ACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16437979 CTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
16438044 CGGCCAGAGGTGTGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * ** * * * * *
16438109 AGCTGCCACAATCCTTGGTTCAGTCTGATCCTAGACTGGGAATGACCTCCGTATACCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
16438174 CCGACGAAA--CGAGCGGGCGGGTGGGCGGGCAATATGCTGGCCAGAGAGGCGGGATTCGCAAGT
196 CCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * **
16438237 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGCCAT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
16438302 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGG
326 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * ** *
16438367 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
391 ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
*
16438432 AGAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCCTGCACAAAA
456 AGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
16438497 ATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTT
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * **
16438562 AGGCACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGCATGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16438627 TTCTTGAGATTTGATGAGGGATAGGGGG-CAATTATAAGGGCCGAGTACCAGCACCCATCGCACA
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
16438691 TCATGTGGGCACACCCCCCGGTCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTC
714 TCATGTGCGCACACCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * * * * * **
16438756 CGACGATGGTATCCCGAAGAAGAAAAATACGGTACCAACACATGCCCGAGCACAGCATGTGCTGT
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* *
16438821 TGCAA-CC-C--TT--G---G-TC-----C-----A-G---TCTG-AT-
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * ** * *
16438844 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16438909 CGGTCAGAGGGGCAGGATGTGCAACCCGGGGATCG-GTCGGGTCCCCCTCAGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGT--CCC-C--C-T-CT----A-C
* * * ** ** *
16438973 CTGCTGCCGATCCTGCTGCCACAACCCTC-GATCTAGTCCAATCTTAGACTGGGAATGAACTCTG
118 ATGCTACCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * ** * *
16439037 TATGCCTAAGCCAACCGATGAAAC-C-AGCGGACGGGTAGGCGGGCACTACACCGACCAGAGAGG
182 TATGCCTAAGCCAACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * *
16439100 TGGGAT-CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
247 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
16439164 CATGCCAATGCCATTTTTCTAGCATGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGT
312 CATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * *
16439229 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTTGAGATTT
377 TTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTT
* *
16439294 TTTAAAATTTTTTCAGATGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
442 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
16439359 GGCATGCACATAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
507 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
16439424 GTATCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
572 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
16439489 AAGAGGGTGTTAGTTGTTGAGGTTTGATGAGGGATA-GGGGCCAAT-TGAAGGGCCAAGTGCCAG
637 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAG
* * * * *
16439552 GACCCTTCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTC
701 CACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTC
* * ** *
16439617 GGTCAGGTTCTTCGACGATGGTGTCCCGACAAAGAAAAACGTG--GCACCTGCACATGCCCGAGC
766 GGTCAGATTCTCCGACGATGGTGTCCCGATGAAG-AAAA-GTGCAGCACCAGCACATGCCCGAGC
* * * * * *
16439680 CCAGCATGTGCTGCTGCAACCCTTGG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
829 CCAGCATGTGCTACCGCAACCCTCGGTTC-GGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * *
16439743 CTTAGACTGGGAATGAACTCC-TATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** ***
16439807 CGGCTAGAGGGGTGGGATGCGCAAGTCGAGGATC-AGCAGGATCCCTTTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CTGGGTCCCCCTCTACATGCTACCGATC
* * *
16439871 CTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16439936 ACAGACGAAA--CGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
16439999 CCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATTCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
16440064 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
16440129 GACTCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGG-TTTTTTAAAATTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTT
* ** *
16440192 TCAAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
16440257 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * ** *
16440322 CAGACACTTTAACGGCTACTGGCATCAAACCTGTAAAATCTCAAATTATATTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
16440387 GTTCTCGAGGTTTGATGAGGGCTAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * * *
16440452 TCATGTGCACACACCCCCCCGACCGCCCTGATTGTCGGAA-CCCAATGCCGTCGGTCAGGTTCAC
714 TCATGTGCGCACACCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * *** * *
16440516 CCACGATGGTGTCCCGACGAAGAAAAATATGGCATCAGCACATGCCCGAGGCCAGCATGTGCTAC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
*
16440581 CGCAA-CC-C---T-AG---G-TC-----C-------G--ATCCG-AT-
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * ** * **
16440604 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATTGAGCATATGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * * * * * ** *
16440669 CGAATAGAGGGGCCGGATGCGTAAGTCGAGAATCTACCGGGTCCCCCTCCGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * *
16440734 TGCTGCCGCAGCCCTCAGTCCGAATC-AATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCCG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
16440798 ACCGACGAAA--CGAACGGGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
16440861 CAGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
16440926 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * * * *
16440991 GAGTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTATAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
*
16441056 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16441121 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16441186 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16441251 TTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
16441316 CATGTGCGCACACCCTCCCGGCCCCCTCGATCGTCGGAACCCTAATGTC-TCCGATCAGGTTCTC
715 CATGTGCGCACACCC-CCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGT-CGGTCAGATTCTC
** * * *
16441380 CGGTGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * *
16441445 CGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
*
16441494 C-----CT---AA-G---T-C--A-ACC-AA-T--------GAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
16441533 TGGCCAGAGGGGTGGGATGCGCAAG-TTAGGGATCGACCGAGTCCCCCTCTATGA-GCTACCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACTGGGTCCCCCTCTA-CATGCTACCGAT
** ** * * ** * * *
16441596 CCTGCTATCATAACTCTCGGTCTAGTCCGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * *
16441661 AACCGACGAAA--CGAGCGGGTGGGCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGTGGAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
*
16441724 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16441789 ATTTTTCTGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * *
16441854 CGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACTGTTCGAGATTTTTTTAAATTTTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * *
16441919 TCAGAAAGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16441984 ACAATTCAGCTAAAAACTCGAAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
16442049 TAAGACACTTTAATGGCTACTGGCAGCAAACCTATAGAATCTCAAATGCCCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16442114 AGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCATCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * * *
16442179 ATCATGTGCGCACACCCCCGA-CCCCCCCGATCGTTGGAACCCCGATGTCGTCGTTAAGGTTCTT
713 ATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * ** * **
16442243 TGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGT
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
*
16442308 CGTAACCCTCGGTTC-G---G-TC-----C-------G--AT-C-T-TG
843 CGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * * *
16442335 ----GACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * * * * * **
16442396 TGGCCAGAGGATTGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTATGA-GCTATAGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTA-CATGCTACCGATC
* * * * * *
16442460 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
16442525 ACCGACGAAA--CGAGCGGGTGGGCGGGCGAGCACTACATCGGCCATAGAGGCGGGATGTGGAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
16442588 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
16442653 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATATGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
16442718 GACTCCTTTTTTATTTTTCA-G--------GA----TT-C-----GGGATTTTTTAAAATTCTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
16442764 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
16442829 AAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
16442894 AGACACTTTAATGGCTACTGGTAGGAAACCTGTAAAATGTCAAATGCTCTTTAAAGGGGTGTGCG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
16442959 TTCTCAAGGTTTGATGAGGGATAGGGTGCTAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * * * * * *
16443024 CACGTGCGCAAACTCCCCTGGCCCCCCCGGTCGTCGAAACCCTAATGTCGCCGGTTAGGTTCTCC
715 CATGTGCGCACAC-CCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTCC
* * ** * *
16443089 GACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
779 GACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
16443154 GCAA-CC-C---TC-G---G-TC-----C---G---G---TCCG-AT-
844 GCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * * * *
16443176 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *** ** *
16443241 CGGCCAGAGGGGCGGGATTGCTAAAGCCGGGGATCGACCGGGTCCCCCTCTGGGTATTGCCGATC
66 CGGCCAGAGGGGCGGGA-TGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATC
* * *
16443306 CTGCCGCCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
16443371 ACCAACGAAA--CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCTCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
16443434 CCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
16443499 TTTTTTTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * **** * *
16443564 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAAATGTTTTAAAATATTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * *
16443629 GAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAGAATA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16443694 ACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
16443759 AGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCATTAAGGGGGTTTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16443824 TTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
16443889 CATGTGCGCACACCCCCCCGGCCCCCCCCGATTGTCGGAACCCTAATGCCG-CAGGTCAGGTTCT
715 CATGTGCGCACA-CCCCCCAG-CCCCCCCGATCGTCGCAACCCCAATGTCGTC-GGTCAGATTCT
* * * * *
16443953 CCGGCGATGGTGTCCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCGAACCTAGCATGTGCT
777 CCGACGATGGTGTCCCGA-TGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
16444017 ACCGTAACCCTTGGTTC-G---G------T-C------TG--AT-C--A--
841 ACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
** * * ** *
16444044 --TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAATTGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * * *
16444107 CAGCCAGAGGGGCAGAATGCGCAAGTCGGGGATCGA-TCGGGTCCCTTTCTGCTTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* ** ** * * * * **
16444171 CTACTATCGCAACCCTTGGTTCGATCCGATCTTAGACTGGGAATAAACTCTATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
16444236 ACCGAGGAAA--CGAGCGGGCGGGCAGGCGGGCACTACGCCAGCTAGA-AGGCAGGATGCGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
**
16444298 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
16444363 TTTTTCTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * * *
16444428 GACTCGTTTTCTATTTCTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* *
16444493 CAGAAAGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16444558 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
16444623 AGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*** * *
16444688 TTCTCGAGGTTTGATGAGGGATAGGACACTAATATAAGGGCCAAGTGCCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
16444753 CATGT--G--CA-----CA-CCCCCCCGATCGTCGGAACCCCAATG-CTGTCGATCAGGTTCTTT
715 CATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTC-GTCGGTCAGATTCTCC
* * * * * * * * *
16444807 GGCGATGGTCTCTCGGTGAAGAAAAATTCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
779 GACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
16444872 GCAA-CCT---TT--G---G------T-C------TG--ATCCG-AT-
844 GCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* ** *
16444894 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * **
16444959 CGGCCAGAAAGACGGGATGCACAAGCCGGGGATCG-GTCGGGTCCCCCTCTGCGTGCCGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTACATGCTACCGATC
* * * * * *
16445023 CTGCTACCACAACCCTC-GATCCGGTCTGATCTTATACTAGGAACGAACTCCGTATGCCGAAGCC
130 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
16445087 AACCGACGGAA--CGAGCGTGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGGCGGGATGCGCAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* *
16445150 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTACATATTTCTGCCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* *
16445215 ATTTTTTTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * *
16445280 CGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCGTGATTGTTTAAAATTTTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * * *
16445345 TCAGATGGTGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16445410 AAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATT
*
16445475 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
16445540 AGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
16445605 ATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCG-CTGGAACCCTAATGCCGCCGGTCAGGTT
713 ATCATGTGCGCACA-CCCCC-CAGCCCCCCCGATCGTC-GCAACCCCAATGTCGTCGGTCAGATT
* * * * *** *
16445669 CTCTGGCAATGGTGTCCCGATGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGC
775 CTCCGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
16445734 TACTGCAACCCTC-GTTCCAGTCCGATCTTAGATTG-GAAATGAACTCCGTATG
840 TACCGCAACCCTCGGTT-CGGTCTGATCTTATACTGAG-AATGAAATCCGTATG
* * ** * *
16445786 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *** *
16445851 CGGACAGAGGGACGAGATTCGCAAGCCG-GAGATCGA-TCGGGTCCCCCTCTGTGTGCCACCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGACT-GGGTCCCCCTCTACATGCTACCGAT
* * * * *
16445914 CCTGCTGCCACAACCCTC-GATCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * *
16445978 CAACCGACGAAA------CGAGCGGACGGGCGGATACTACGTCGGCCAGAGAGACGGGATGCGCA
193 CAACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* * *
16446037 AGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
*
16446102 CATTTTTCTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
323 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * * * *
16446167 ACGAGTCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTA-TGTTTCGGGATTTTTAAAAATTT
388 ACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTT-GGGATTTTTTAAAATTT
* * * *
16446230 TTTCAGATGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAA
452 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AC
*
16446295 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
16446360 TTTTAGACATTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
16446425 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT-G
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCG
* * * * * *
16446489 CACATCATGTGCGCACACCCCCCGGCACCCCCCGGTCGTCGGAACCCCAATG-CGGCCAGTCAGG
710 CACATCATGTGCGCACACCCCCCAGC-CCCCCCGATCGTCGCAACCCCAATGTC-GTCGGTCAGA
* * * * * *
16446553 TTCTCCGGCAATGGTGTCCCGGTGAAGAAAAATGC-GACACCAGTACATGCCCAAGCCCAGCATG
773 TTCTCCGACGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATG
* * * * *
16446617 TGCTACCGTAACCCTCGG-TCTAGTTTGATCTTAGACTG-GTAATGAACTCCGTATG
837 TGCTACCGCAACCCTCGGTTC-GGTCTGATCTTATACTGAG-AATGAAATCCGTATG
** * *
16446672 CTTAGACTACGAATGAACTCCATAT-CCTTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCATATACC-TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16446736 CCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGAC-GGGTCCCCCTCTGCATGGC-ACCGA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GACTGGGTCCCCCTCTACAT-GCTACCGA
* * * *
16446799 TCCTGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGC
128 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** *
16446864 CAACCGACGAAA--CGAACGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCA
193 CAACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* **
16446927 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGGTGCCAATGC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
16446992 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
323 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* ** * *
16447057 AC-AGCTCGTTTTCTATTTTTCACGATTTTCGACACTTTTTACGGTTCGGGATTTTTTAAAATTT
388 ACGA-CTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTT
* * *
16447121 TTTCAGAAAGAGTTTTGGCCCCAAACATGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACA
452 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
16447186 AAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
16447251 TTCAGACACTTTAAGGGCTCCTGGCAGCAAACCTGAAAAATCTCAAATGCCCTTTAAGGGGGTTT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
16447316 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
16447381 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCATTGCCGTCGGTCAGGTTC
712 CATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTC
* * * * * * *
16447446 TCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACAGGCCAGAGCCCAGCATGTGCT
776 TCCGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
16447511 GCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATG-AA--C--A--
841 ACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16447555 CTT---C-----ATG-----------CCTAAGTCAACCCATGGAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * * * * *
16447601 CGACTAAAGGGGCGAGATGCGCAAGGTGGGGATCGGCCGGATCCCCCTCTACGTGCTACCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * *
16447666 TGCTGCCACAACCCT-AGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCA-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
16447730 ACCGAC-AAA-ACGAGCGGGCGGGCGGACGGGCACAACACCGGCCAGAGAGGCGGGATGTGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
** *
16447793 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAAAGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
16447858 TTTTTCTGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCATGTGAATTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
16447923 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
** * *
16447988 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGATCCGTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* **
16448053 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTCCCCAATT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATT
*
16448118 T-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTA
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
16448182 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
16448247 ATCATGTTCGCACACACCCCCGATCCCTCCC-ATCATGGGAACCCCAATGTCGTCGGTCAGGTTC
713 ATCATGTGCGCACAC-CCCCC-AGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTC
* ** * * * *
16448311 TTCGGTGATGGTGTCCCGGTGAAGAAAAATAC-GATACCAGCACATGCCCGAGCCCAGCATGTGC
776 TCCGACGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * * *
16448375 TGCTGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 TACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * * ** * *
16448427 CTTAGATTGGGAATGAACTTCGTATGTCTAAGTCAACCCACGGAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ***
16448492 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * *
16448557 TGCTGCCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16448622 CCGATGAAA----------CGGGCGGGCGGGCACTACGTCGGCCAGAAAGGCGGGATGCGCAAGC
196 CCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * **
16448677 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCAT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * *
16448742 TTTTCTAGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCATGTGAATTTTCATGGCAAGACG
326 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * * *
16448807 ACTCG-TTTCTATTTTTCA-AATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATCTGCTT
391 ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAAT-T-TTT
* * ** * *** * * * * ** **** * *
16448870 TAAGTAGGACGTGAT-G---TATTTTTTG-AGGCATGTTCAGATG-A-AAGGGATAGG--GGC-C
454 TCAGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTG-TTGGCATGCAC
** * ** * ** ****** * * ****
16448925 AATATAAGGGTACCAGC-ACCATCGCACATC-ATGTGCGCACCCCCCCTGATCACCCAATTCCTC
516 AA-A-AA-AAT-TCAGCTA--A--AAAC-TCGAAGTGTACA-AGATTTTG-TGA-CCATTTGAAA
** * * *** * **
16448988 GGAG-GTTCTCCGGCGATGGTTCCCGGGACGGCACAACATGCCAGC-AGCATGTGCTGCCTCACC
569 AAAGTG-TC-CC--C-AT--TT--C-AGAC-ACTTTA-ATG---GCTA-C-TG-GCAG-CAAACC
*** * * *** * * * *
16449051 TTGGTCCGATCGATC--TTGACTAATGTTAAGGCCAT-TGA-TCCCATTTCAAGCACTTTAATG-
615 -T-GTAAAATC--TCAAATG-CT-CT-TTAAGGGGGTGTGAGT----TCTCGAG--GTTTGATGA
** *** * **** * * *** *
16449111 GCTACT-GGCATCAAACCTATAAAATTTCAAATGCTCTTTAAGGCAGTGTGAGTTCTCGAGGTTT
667 GGGA-TAGGGGGCCAA--TAT-AAGGGCCAAGTAC-C----A-GCA--CCCA--TCGC-A-----
* * * ** *
16449175 GATGAGGGATAGGTG-GCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC-ATCATGTGCGCA
712 CAT----CAT--GTGCG-C---A-CA---CC---CCCCAGC-CCC--C-C-CGATC--GT-CGCA
* * * *
16449238 CACCCCCTGGCCCCTCCGATCACCGGAACCCAAATGCCGTCTGTCAGGTTCTCCGGCGATGGTGT
752 -A-CCC------------------------C-AATGTCGTCGGTCAGATTCTCCGACGATGGTGT
* * * * * **
16449303 CCC-AGCGAAGAAAAATAC-GACACTAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTC
790 CCCGA-TGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* * * * *
16449366 AG-TCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
853 GGTTC-GGTCTGATCTTATACTGAGAATGAAATCCGTATG
* *
16449405 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
16449470 CGGCCAAAAGGGAGGGATGCGCAAG-CTAGCGATCG-GTCGGGTCCCCTTCTACGTGCTACCGTT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGACT-GGGTCCCCCTCTACATGCTACCGAT
* * **
16449533 CC-GCTGCCACAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** ** * *
16449597 AATCGACGAAA----------CGAACGGGTAGGCACTACGCCGACTAGAGAGGCGGGATGCGCAA
194 AACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * * * **
16449652 GCCATAGATTGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTATCATGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16449717 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * ** * *
16449782 TGACTCGTTTTCTATTTTTCATAATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * *
16449847 TCAGAAGGATTTTTGGCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** * *
16449912 ACGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCTATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
16449977 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
16450042 GTTTTCGAGGTTTGATGAGTGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCACACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** * * * *
16450107 TCATGTGTGCATACCCCCCGGCCCCCCCGATCACCAG-AACCCCAATGCCGACGATCAGGTTCTC
714 TCATGTGCGCACACCCCCCAGCCCCCCCGATCGTC-GCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * * * * * *
16450171 CGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGTCCAGGATGTGATGC
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* *
16450236 CGCAACCCTCAGTCCAGTTCGATCTTAGAATGGGAATGAACTCCATATGCTTAGATTGGGAATGA
843 CGCAACCCTC-G----GTTCGGTC------T--G-AT---CT---TATAC-T-GA----GAATGA
*
16450301 ACTCCGTATG
882 AATCCGTATG
* * * *
16450311 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ***
16450376 TGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* ** * * *
16450441 TGCTACCGCAA-CCTTTGATCCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * * * *
16450505 TCCGAAGAAA--CGAGCGGGTGGACGGACGGGCACTACGTCGTCCAAAGTGACGGGATGAGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
16450568 CCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTCGTGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
16450633 -TTTTCTGGCTTGTAAATTCATACAATGGTCTCTTATGCCTTCATGTGAAGTTTCATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * ** * **
16450697 GACTCGTTTTCTATTTTTTAGGATTTTCGAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
*
16450762 TAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
16450827 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCTTTTG-AAAAAGCTATCCCCATTT
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTT
* *
16450891 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTCTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
16450956 GTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
16451021 TCATGTGCACACACCCCCCCCGCCCCCCTCCGATCGTCGGAACCCCAGTGCCGTCGGTCAGGTTC
714 TCATGTGCGCACA-CCCCCCAG-CCCCC-CCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTC
* * * * *
16451086 TCCGACGATGGTGTCCCGACGAAGAAAAATAC-GACTCCAGCACATGGCCGAGCCCAGCATGTGC
776 TCCGACGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
16451150 TACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 TACCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* *
16451202 C-----CT---AA-G---T---TA-ACC-----C-A--TA--AAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
16451241 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCCCCCTCTGCATACTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
* * * * * *
16451306 TACTACCGTAACCCTCAGTCCGGTCCGATCTTAAACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16451371 CCGACGAAA--TGAGTGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGC
196 CCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * **
16451434 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGCCAT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
16451499 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCCAGACG
326 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
16451564 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
391 ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
* ** *
16451629 AAAAGGAGTTTTGGCCCCAAAAATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
456 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
16451694 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTG-AAAAAGCTATCCCCATTTT
521 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTC
* * * *
16451758 AGACACTTTAATGGCTACTGGCAGTAAAACTGTAAAATCTCAAATACTCTTTAAGGGGGTGCGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16451823 TTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
16451888 CATGTGCACACACCCCCCCGCCCCCCTCCGATCGTCGGAACCTCAATGCCGTTGGTCAGGTTCTC
715 CATGTGCGCACACCCCCCAG-CCCCC-CCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTC
* * * * * * **
16451953 CGACAATGGTGTCCCGACGAAGAAAAATAC-GACTCCAACACATGGTCGAGCCCAGCATGTGCTA
778 CGACGATGGTGTCCCGATGAAGAAAAGTGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTA
* ** * * *
16452017 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
842 CCGCAACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
* * *
16452067 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16452132 CGGCCAGA-GGGTGGGATGCGTAAGCCGAGGATCGATTGTGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
** * * * * * * *
16452196 TATTACCGCAACCCTCGGTCTGAT-TCGGTCTTAAACTGGGAATGAACTCCGTATACCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16452260 ACCGACGAAA------CGAGCGGGCGGGCGGGCATTACGCCGGCCAGAGAGGCGGGATGTGCAAG
195 ACCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
*
16452319 CCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
16452384 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTGTGATGGCAAGAC
325 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * ** * *
16452449 TACTCGTTTTCTATTTTTCACAATTTTTGAAAA--TTTTAAAGTTCGAGATTTTTTAAAATTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTT-AAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* ** * * *
16452512 TCAGAAAGAGTTTTGGTGCCAAACTTGGTAAACGTGGTCCTTCTATTTTTGTTGGCATGCACAAA
454 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16452577 AAATTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
16452642 CAGACACTTTA
584 CAGACACTTTA
16452653 TGCCTAAGTC
Statistics
Matches: 21268, Mismatches: 3665, Indels: 3105
0.76 0.13 0.11
Matches are distributed among these distances:
833 8 0.00
834 4 0.00
835 4 0.00
836 67 0.00
837 548 0.03
838 10 0.00
839 2 0.00
840 10 0.00
841 4 0.00
842 4 0.00
843 172 0.01
844 105 0.00
845 170 0.01
846 293 0.01
847 13 0.00
848 3 0.00
849 9 0.00
850 21 0.00
851 13 0.00
852 288 0.01
853 310 0.01
854 151 0.01
855 17 0.00
856 2 0.00
858 5 0.00
859 4 0.00
860 16 0.00
861 490 0.02
862 563 0.03
863 1319 0.06
864 1418 0.07
865 1664 0.08
866 747 0.04
867 21 0.00
868 22 0.00
869 21 0.00
870 18 0.00
871 31 0.00
872 33 0.00
873 113 0.01
874 75 0.00
875 207 0.01
876 210 0.01
877 124 0.01
878 14 0.00
879 101 0.00
880 159 0.01
881 537 0.03
882 197 0.01
883 194 0.01
884 13 0.00
885 234 0.01
886 881 0.04
887 736 0.03
888 1941 0.09
889 614 0.03
890 1650 0.08
891 312 0.01
892 192 0.01
893 9 0.00
894 20 0.00
895 13 0.00
896 17 0.00
897 674 0.03
898 202 0.01
899 39 0.00
900 15 0.00
901 8 0.00
902 22 0.00
903 15 0.00
904 21 0.00
905 15 0.00
906 155 0.01
907 89 0.00
908 20 0.00
909 31 0.00
910 32 0.00
911 29 0.00
912 25 0.00
913 27 0.00
914 387 0.02
915 103 0.00
916 12 0.00
917 101 0.00
918 8 0.00
919 5 0.00
920 8 0.00
921 12 0.00
922 8 0.00
923 23 0.00
924 36 0.00
925 31 0.00
926 29 0.00
927 8 0.00
928 31 0.00
929 16 0.00
930 19 0.00
931 10 0.00
932 6 0.00
933 20 0.00
934 19 0.00
935 14 0.00
936 12 0.00
937 4 0.00
938 12 0.00
939 9 0.00
940 11 0.00
941 5 0.00
942 15 0.00
943 3 0.00
944 6 0.00
945 5 0.00
946 28 0.00
947 10 0.00
948 20 0.00
949 12 0.00
950 19 0.00
951 16 0.00
952 15 0.00
953 9 0.00
954 8 0.00
955 24 0.00
956 10 0.00
957 6 0.00
958 2 0.00
959 2 0.00
960 4 0.00
961 5 0.00
962 3 0.00
963 6 0.00
964 6 0.00
965 4 0.00
966 5 0.00
967 3 0.00
968 3 0.00
969 1 0.00
970 10 0.00
971 4 0.00
972 2 0.00
973 3 0.00
974 9 0.00
975 12 0.00
976 10 0.00
977 256 0.01
978 242 0.01
979 41 0.00
980 14 0.00
981 20 0.00
982 7 0.00
983 8 0.00
984 6 0.00
985 6 0.00
986 9 0.00
987 8 0.00
988 14 0.00
989 9 0.00
990 2 0.00
991 5 0.00
992 4 0.00
993 2 0.00
994 3 0.00
995 2 0.00
997 3 0.00
999 5 0.00
1000 10 0.00
1001 9 0.00
1002 4 0.00
1003 5 0.00
1004 7 0.00
1005 4 0.00
1006 9 0.00
1007 13 0.00
1008 7 0.00
1009 6 0.00
1010 5 0.00
1011 2 0.00
1012 5 0.00
1013 2 0.00
1014 6 0.00
1015 3 0.00
1016 7 0.00
1018 2 0.00
1020 6 0.00
1021 2 0.00
1022 6 0.00
1023 1 0.00
1024 698 0.03
1025 182 0.01
1026 101 0.00
1027 76 0.00
1028 173 0.01
1029 159 0.01
1030 58 0.00
1031 259 0.01
1032 83 0.00
1033 85 0.00
1034 37 0.00
1035 80 0.00
1036 59 0.00
1037 65 0.00
1038 46 0.00
1039 66 0.00
1040 99 0.00
1041 69 0.00
1042 95 0.00
1043 49 0.00
1044 76 0.00
1045 56 0.00
1046 82 0.00
1047 322 0.02
1048 418 0.02
1049 70 0.00
1050 351 0.02
1051 61 0.00
1052 67 0.00
1053 108 0.01
1054 130 0.01
1055 124 0.01
1056 68 0.00
1057 69 0.00
1058 74 0.00
1059 32 0.00
1060 35 0.00
1061 29 0.00
1062 20 0.00
1063 50 0.00
1064 40 0.00
1065 56 0.00
1066 63 0.00
1067 70 0.00
1068 66 0.00
1069 41 0.00
1070 24 0.00
1071 49 0.00
1072 49 0.00
1073 55 0.00
1074 40 0.00
1075 55 0.00
1076 47 0.00
1077 39 0.00
1078 42 0.00
1079 48 0.00
1080 29 0.00
1081 22 0.00
1082 11 0.00
1083 20 0.00
1084 29 0.00
1085 18 0.00
1086 6 0.00
1087 14 0.00
1088 28 0.00
1089 11 0.00
1090 26 0.00
1091 18 0.00
1092 9 0.00
1093 14 0.00
1094 39 0.00
1095 18 0.00
1096 29 0.00
1097 10 0.00
1098 2 0.00
1101 1 0.00
1102 2 0.00
1103 2 0.00
1104 11 0.00
1105 12 0.00
1106 2 0.00
1107 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTACATGCTACCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGCAACCCCAATGTCGTCGGTCAGATTCTCCGA
CGATGGTGTCCCGATGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCGGTTCGGTCTGATCTTATACTGAGAATGAAATCCGTATG
Found at i:16427956 original size:26 final size:26
Alignment explanation
Indices: 16427927--16427977 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427917 CCGGTCCGAT
*
16427927 CTTATACTGAGAATGAAATCCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
* *
16427953 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAAATCCGTAT
16427978 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAAATCCGTATG
Found at i:16430153 original size:26 final size:27
Alignment explanation
Indices: 16430123--16430180 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
16430113 GACGACTCGT
**
16430123 TTTTTATTTTTCACG-ATTTTTAAAAC
1 TTTTTATGGTTCACGAATTTTTAAAAC
* * *
16430149 TTTTTGTGGTTCAGGAATTTTTAAAAT
1 TTTTTATGGTTCACGAATTTTTAAAAC
16430176 TTTTT
1 TTTTT
16430181 CAGAAGGATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (27 bp):
TTTTTATGGTTCACGAATTTTTAAAAC
Found at i:16430569 original size:26 final size:26
Alignment explanation
Indices: 16430540--16430592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16430530 CTGGTCCGAT
*
16430540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
16430566 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
16430592 C
1 C
16430593 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:16431452 original size:26 final size:26
Alignment explanation
Indices: 16431423--16431473 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16431413 GGTCCGATCC
16431423 TAGACTGGGAATCAACTCCGCATGCT
1 TAGACTGGGAATCAACTCCGCATGCT
* *
16431449 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATCAACTCCGCATGC
16431474 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATCAACTCCGCATGCT
Found at i:16434796 original size:26 final size:26
Alignment explanation
Indices: 16434756--16434808 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16434746 CCAGTCCGAT
*
16434756 CTTAGACTGGGAATGAACAT-CGTATG
1 CTTAGACTGGAAATGAAC-TCCGTATG
16434782 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16434808 C
1 C
16434809 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16435511 original size:722 final size:720
Alignment explanation
Indices: 16434056--16436342 Score: 3175
Period size: 722 Copynumber: 3.1 Consensus size: 720
16434046 TCATTTTCAT
* * *
16434056 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGC--GCTC-
* * *
16434121 ACGCCGGCCAGAGAGGTGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
63 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
16434186 ATCTTCATATTTCTGCCATACCAATGCCATTTTTCTGTCTTCTAAATTCACACAATGGTCCCTTA
128 ATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCCTTA
*
16434251 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
193 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTT
* **
16434316 TTACGGTTCGGGATTTTTTAAAATATTTTTAGAAGGATTTTTTGATCCAAACTTGGTAGACGTGA
258 TTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGA
*
16434381 TCCTTGTATTTTTATTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
323 TCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
16434446 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAACTACTGGCAGCAAACCTGTAAA
387 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAA
*
16434511 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATA
452 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * ** * *
16434576 AGGGCCAAGTACTAGCA-CCATCACACATCATGTGCATACACCCCCCCGGCCCCCCCGATCGCCG
517 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-GCCCCCGATCGTCG
* * * * * *
16434640 AAAGCCCAATGTCGTCGGTCAGGTTCTCCGACAATGGTGTCCCGACGAAGAGAAGTACGGCACCA
581 -AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCA
* * *
16434705 GCACATGCTCGAACCCAGCATGTGCTGCCGCATCCCTCGATCCAGTCCGATCTTAGACTGGGAAT
645 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAT
16434770 GAACATCGTATG
710 GAAC-TCGTATG
* * *
16434782 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGTGCGCTCA-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCACG
*
16434846 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC
66 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
16434911 TTCATATTTCTACCATGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAACC
131 TTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCCTTAAGC
* * * *
16434976 CATCATGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCATGATTTTCGAAATTTTTTA
196 CTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* *
16435041 CGATTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCC
*
16435106 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTC-AATGTGTACAAGATTTTGTG
326 TTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTG
* * * * *
16435170 ACTATTTGTAAAAAGTGTCCCCATTTCAGACACTTTGATAGCTACTGGTAGCAAACCTATAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAAT
* *
16435235 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAACATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
16435300 GGTCAAGTACCGGCACCCATCGCACATCATGTGTGCACACCCCCCCGGGACCCCCAATCGTCGGA
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGG-CCCCCGATCGTCGAA
* * * * * * *
16435365 TCGCAATGCCGACGGCCAGGTTCTCTGACGATGGTGTCCCGGTGAAGAAAAATACGGCACCAACA
583 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCA
* * * *
16435430 CATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
648 CATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAA
*
16435495 CTCTATATG
713 CTC-GTATG
* * * * * * * *
16435504 GTTAGACTGGGATTGAACTCCGTATACCTAAGCCAACCGATGAAACGAACAGGCGAGCGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG---A-GCGTG-TGG-GCG
* * * * * *
16435569 CATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGCTCGTTAGGGTGGTAGGTGGGTTTTG
60 C-TCACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
16435634 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCC
124 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCC
* * * * ** *
16435699 CTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACCCGTTTTCAATTTTTCACAATTTTTGAAA
189 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAA
** * * * * * *
16435764 CTTTTTACGGTTCGGGAACTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAAATTGGTAGAC
254 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGCCCCAAACTTGGTAGAC
16435829 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
319 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16435894 TTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTTATGGCTACTGGCCA-CAAACCT
383 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGG-CAGCAAACCT
* **
16435958 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAAGGCCA
447 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
16436023 ATATAAGGGCCAAGTGCCAGTACCCATCGCACATAATGTGCGCACACCCCCTCCAGGCCCCCTGA
512 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGGCCCCC-GA
* * * * **
16436088 TCGTCAAAACCCCAATGCCGTCCGTCAGGTTCTCCGACGACGGTGTCCCGGCAAAGAAAAATTTG
575 TCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACG
* *
16436153 GCAGCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCTGGTCCGATCTTAGAC
639 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGAC
16436217 TGGGAATGAACTCCGTATG
703 TGGGAATGAACT-CGTATG
* **
16436236 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTACTCA-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCACG
* * * *
16436300 CCGGCCAGAGGGGCGAGATGCGTAAGCTCG-GGATCGATCGGGT
66 CCGGCCAGAGAGGCGGGATGCGCAAGC-CGTGGATCGATAGGGT
16436343 TACCCTCTGC
Statistics
Matches: 1367, Mismatches: 172, Indels: 46
0.86 0.11 0.03
Matches are distributed among these distances:
721 4 0.00
722 586 0.43
723 42 0.03
724 37 0.03
725 4 0.00
726 59 0.04
727 3 0.00
728 7 0.01
729 3 0.00
730 445 0.33
731 18 0.01
732 158 0.12
733 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (720 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCACG
CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGGCCCCCGATCGTCGAACCC
CAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACCAGCACAT
GCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
GTATG
Found at i:16436239 original size:26 final size:26
Alignment explanation
Indices: 16436210--16436262 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16436200 CTGGTCCGAT
16436210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16436236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16436262 C
1 C
16436263 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16437126 original size:26 final size:26
Alignment explanation
Indices: 16437090--16437142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16437080 CCGGTCCAAT
* *
16437090 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16437116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16437142 C
1 C
16437143 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16438979 original size:12 final size:12
Alignment explanation
Indices: 16438962--16438992 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
16438952 CCCCTCAGCG
16438962 TGCTGCCGATCC
1 TGCTGCCGATCC
16438974 TGCTGCCGATCC
1 TGCTGCCGATCC
16438986 TGCTGCC
1 TGCTGCC
16438993 ACAACCCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.42, G:0.26, T:0.26
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:16439753 original size:26 final size:25
Alignment explanation
Indices: 16439717--16439768 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
16439707 CTGGTCTGAT
16439717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
16439743 CTTAGACTGGGAATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
16439768 C
1 C
16439769 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:16441812 original size:864 final size:863
Alignment explanation
Indices: 16435505--16448863 Score: 16750
Period size: 864 Copynumber: 15.3 Consensus size: 863
16435495 CTCTATATGG
* * * * * * *
16435505 TTAGACTGGGATTGAACTCCGTATACCTAAGCCAACCGATGAAACGAACAGGCGAGCGGGAGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
16435570 ATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGCTCGTTAGGGTGGTAGGTGGGTTTTGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
16435635 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * *
16435700 TTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACCCGTTTTCAATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** * * *
16435765 TTTTTACGGTTCGGGAACTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAAATTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
16435830 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
16435895 TTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTTATGGCTACTGGCCA-CAAACCTG
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTG
* *
16435959 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAAT-AGAAGGCCA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCA
* * * *
16436023 ATATAAGGGCCAAGTGCCAGTACCCATCGCACATAATGTGCGCACACCCCCTCCAGG-CCCCCTG
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GGCCCCCCCG
** * * * * * **
16436087 ATCGTCAAAACCCCAATGCCGTCCGTCAGGTTCTCCGACGACGGTGTCCCGGCAAAGAAAAATTT
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
* *
16436152 GGCAGCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAC
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G---TT---C
*
16436217 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
696 --GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* ** * * * **
16436282 GAGCGTGTGGGTACTCAGCCGGCCAGAGGGGCGAGATGCGTAAGCTC-GGGATCGATCGGGTTAC
750 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGACCGGGTCCC
** * * * * *
16436346 CCTCTGCATGCTGTCGATCTTGCTACCGTAACCCTCAGT-TCGGTCCGATC
814 CCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATC
* *
16436396 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACTA--------GCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * *
16436453 ACTATGCCGGCCAGAGAGGTGGGA-GATGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 ACTACGTCGGCCAGAGAGGCGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * *
16436517 GCACAAT-TTCATATTTCGGCTGTGCCGATGCCATTTTTCTGGCTTGCAAATTCATACAATGGTC
130 GCAC-ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
16436581 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTCTTCTATTTTTCACGATTTTTAAA
194 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
16436646 ACTTTTTACGGTTCGGGATTTTTAAAAAATTTTTCAGATA-GAGTTCTGGGCCCAAA-TTGGCAG
259 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGA-AGGAGTTTTGGCCCCAAACTTGGTAG
* * *
16436709 ACATGATCCTTGTATTTTTGTAGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
16436774 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTCGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
16436839 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGGAGGTTTGATGAGGGATAGGGGGC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAAGGGGC
* * * *
16436903 CAATAAAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCCCCCGGCTCCCCCAA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
** * * * *
16436968 TCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGCAATGGTGTCTCGGCGAAGAAAAATACG
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* * * *
16437033 ACACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGATT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGGT----TC-------
*
16437098 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
696 --G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* ** * **
16437163 AGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGACGATCGATCGGGTGTCCC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* ** * ** * * * * *
16437228 TTTACGTGCTGCCGATCCTACAACCGCAACCCTCGATCCGATCTGATG
816 TCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * *
16437276 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACAGATGAAACGAGCGGGCGGGCGGGCGGGA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
*
16437341 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
16437406 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * * *
16437471 TTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCCCAATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * **
16437536 TTTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAAGAATTTTGGCCCCGAACTTCTTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16437600 TGATCCTTGTATTTTTCTAGGCATGCA-AAAACAAATTCAGCTAAAAACTCAAACTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16437664 TTGGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
16437729 TAAAATCTCAAATGCTCTTTAA-GGAGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
* *
16437793 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACTCCCCCGGTCCCCCTCGAT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCCCGAT
** * ** * * * *
16437858 CACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGTCTCGAGGAAAAAAAATACGG
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * * *
16437923 CACCAGCACATGCTCGAGCCCAGCATGAGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTG
* * *
16437988 GGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGGCCAGAG
713 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * * *
16438053 GTGTGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCAGCTGCCAC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * * *
16438118 AATCCTTGGT-TCAGTCTGATC
843 AACCCTCGGTCT-GGTCCGATC
* * * *
16438139 CTAGACTGGGAATGACCTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
16438204 AATATG-CTGGCCAGAGAGGCGGGATTCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
66 ACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
16438268 GCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
130 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * *
16438333 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCGAAA
195 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
16438398 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAGA
* *
16438463 CGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
16438528 TTTTGTGACCATTTGAAAAATGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACAT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** * * *
16438593 GTAAAATCTCAAATGCTCTTTAAGGGCATGTGAGTTCTTGAGATTTGATGAGGGAT-AGGGGGCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
* *
16438657 ATTATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCCGGTCCCCCCCGA
519 A-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGA
* * * * *
16438722 TCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGGTATCCCGAAGAAGAAAAATACG
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* * * ** * * *
16438787 GTACCAACACATGCCCGAGCACAGCATGTGCTGTTGCAACCCTTGGTCCAGTCTGATCTTAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACT
* * * *
16438852 GGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCGTGCGGGCGCTCAACCGGTCAGA
712 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * **
16438917 GGGGCAGGATGTGCAACCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCG
777 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT---C-TG-T---G----TGCTGCCG
* * * *
16438982 ATCCTGCTGCCACAACCCTCGATCTAGTCCAATC
830 ATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * * **
16439016 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACCAGCGGACGGGTAGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** * * *
16439081 ACTACACCGACCAGAGAGGTGGGAT-CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
16439145 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTAGCATGTAAATTCATACAATGGTCCT
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16439210 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
16439275 TTTTTATGGTTTGAGATTTTTTAAAATTTTTTCAGATGAAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16439340 TGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
16439405 TTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
16439470 AAAATCTCAAATGCTCTTTAAGAGGGTGTTAGTTGTTGAGGTTTGATGAGGGAT-AGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
* * * *
16439534 -TGAAGGGCCAAGTGCCAGGACCCTTCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCG
521 AT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * ***
16439598 TCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGGTGTCCCGACAAAGAAAAACGTGGCA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCA
* *
16439663 CCTGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGG
650 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----TC--G---G---TT---C--GG
*
16439728 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-TATGCCTAGGTCAACCCATGAAACGAGC
698 --T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * * * **
16439792 GTGCGGGCGCTCAGTCGGCTAGAGGGGTGGGATGCGCAAGTCGAGGATC-AGCAGGATCCCTTTC
754 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTC
* * **
16439856 TGTGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTAATC
818 TGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16439902 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** *
16439967 ACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16440032 CACATCTTCATATTTCTGCCATGCCAATTCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
*
16440097 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * **
16440161 TTTTTACGGTTC-AGGGTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTCATAGAC
261 TTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
16440225 GTGATCCTTGTATTTTTGTTGTCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
16440290 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCATCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
** * *
16440355 TAAAATCTCAAATTATATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCT-AGGGTGCCA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG-GCCA
* * * *
16440419 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGACCGCCCTGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * ** *
16440484 TGTCGGAA-CCCAATGCCGTCGGTCAGGTTCACCCACGATGGTGTCCCGACGAAGAAAAATATGG
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * * * * * *
16440548 CATCAGCACATGCCCGAGGCCAGCATGTGCTACCGCAACCCTAGGTCCGATCCGATCTTAGACTA
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTG
* ** * ** ***
16440613 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAATTGAGCATATGGGCGCTCAGCCGAATAGAG
713 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * **
16440678 GGGCCGGATGCGTAAGTCGAGAATCTACCGGGTCCCCCTCCGCATGCTGCCGATCCTGCTGCCGC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * * * *
16440743 AGCCCTCAGTCCGAAT-CAATC
843 AACCCTCGGTCTG-GTCCGATC
* * * *
16440764 TTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAACGGGCAGGTGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16440829 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCAGTGGATCGATAGAGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16440894 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * **
16440959 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
16441024 TTTTTACGGTTCGAGATTTTATAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16441089 TGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16441154 TTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
16441219 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
*
16441284 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCCCTCGATCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCG
* * * * *
16441349 TCGGAACCCTAATGTC-TCCGATCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATGCGGC
585 TCGGAACCCCAATGCCGT-CGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* *
16441413 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGG
* * *
16441478 GAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGG
714 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *** * * * * ** **
16441543 GGTGGGATGCGCAAGTTAGGGATCGACCGAGTCCCCCTCTATGAGCTACCGATCCTGCTATCATA
779 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCA
* *
16441608 ACTCTCGGTCTAGTCCGATC
844 ACCCTCGGTCTGGTCCGATC
* * *
16441628 TTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16441693 ACTACATCGGCCAGAGAGGCGGGATGTGGAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16441758 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTTCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16441823 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
16441888 TTTTTACTGTTCGAGATTTTTTTAAATTTTTTCAGAAAGAGTTTTGGCCCCAAATTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16441953 TGATCCTTGTATTTTTGTTGGAATGCACAAAACAATTCAGCTAAAAACTCGAAAGTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGAT
* * *
16442018 TCTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTA
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
16442083 TAGAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
* * *
16442148 TATACGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACA-CCCCCGACCCCCCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * * ** **
16442212 TTGGAACCCCGATGTCGTCGTTAAGGTTCTTTGGCGATGGTGTCCCGACGAAGAAAAATGTGGCA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * * *
16442277 CCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTTCGGTCCGATCTTGGACTGGG
650 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGG
* * * *
16442342 AATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGA
715 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** * * * * *** *
16442407 TTGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTATGAGCTATAGATCCTGCTACCGCAA
780 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAA
16442472 CCCTCGGTCTGGTCCGATC
845 CCCTCGGTCTGGTCCGATC
* * * *
16442491 TTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16442556 ACTACATCGGCCATAGAGGCGGGATGTGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
16442621 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * *
16442686 TTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCA-G------G--A-
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
16442741 ---TT-C-G---G-GATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
16442797 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
16442862 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGGAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * *
16442927 AAAATGTCAAATGCTCTTTAAAGGGGTGTGCGTTCTCAAGGTTTGATGAGGGAT-AGGGTGCTAA
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG-GCCAA
* * * * *
16442991 TATAAGGGCCAAGTACCAGCACCCATCGTACATCACGTGCGCAAACTCCCCTGGCCCCCCCGGTC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATC
* * * * * * **
16443056 GTCGAAACCCTAATGTCGCCGGTTAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGC
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* * * *
16443121 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGG
* ** *
16443186 GAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
714 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * ** * *
16443251 GGCGGGATTGCTAAAGCCGGGGATCGACCGGGTCCCCCTCTGGGTATTGCCGATCCTGCCGCCAC
779 GGCGGGA-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * *
16443316 AACCCTCAGTCCGGTCTGATC
843 AACCCTCGGTCTGGTCCGATC
* *
16443337 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
16443402 ACTACGTCGGCCAGAGAGGCGGGATGCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16443467 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
16443532 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
16443597 TTTTTACGGTTCAAAATGTTTTAAAATATTTTGAGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16443662 TGATCCTTGTATTTTTGTTGGCATGCAGAATAACATTCAGCTAAAAACTTGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16443727 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
16443792 AAAATCTCAAATGCTCATTAAGGGGGTTTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
* * *
16443857 ATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCCGATC
* * *
16443922 GTCGGAACCCTAATGCCG-CAGGTCAGGTTCTCCGGCGATGGTGTCCC-AGCGAAGAAAAATGCA
584 GTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGTCCCGA-CGAAGAAAAATACG
* * * * * *
16443985 GCACCAGCACATGCCCGAACCTAGCATGTGCTACCGTAACCCTTGGTTCGGTCTGATCATAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACT
* * * ** * *
16444050 GGGAATGAACTCTGTATGCCTAAGTCAACCTACGAATTGAGCGTGCGGGCGCTCAGTCAGCCAGA
712 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * **
16444115 GGGGCAGAATGCGCAAGTCGGGGATCGATCGGGTCCCTTTCTGCT-TGCTGCCGATCCTACTATC
777 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG-TGTGCTGCCGATCCTGCTGCC
* *
16444179 GCAACCCTTGGT-TCGATCCGATC
841 GCAACCCTCGGTCT-GGTCCGATC
* ** * *
16444202 TTAGACTGGGAATAAACTCTATATGCCTAAGCCAACCGAGGAAACGAGCGGGCGGGCAGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16444267 ACTACGCCAGCTAGA-AGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
16444331 CACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * **
16444396 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
16444461 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAATTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
16444526 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16444591 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
16444656 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-A-GGACACTA
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC-C-A
*
16444719 ATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGT--GCACA--------CCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * ** * * ** *
16444774 GTCGGAACCCCAATGCTGTCGATCAGGTTCTTTGGCGATGGTCTCTCGGTGAAGAAAAATTCGGC
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* * * * *
16444839 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCTTTGG-TCTGATCCGATCTTAGACTG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTG
* * * *
16444903 GGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAA
713 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * ** * * * *
16444968 AGACGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCCGCCGATCCTGCTACCAC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * *
16445033 AACCCTCGATCCGGTCTGATC
843 AACCCTCGGTCTGGTCCGATC
* * * * * *
16445054 TTATACTAGGAACGAACTCCGTATGCCGAAGCCAACCGACGGAACGAGCGTGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
*
16445119 ACTACGTCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
16445184 CATATCTACATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16445249 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
16445314 TTTTTATGGTTCGTGATTGTTTAAAATTTTTTCAGATGGTGTTTTGGCCACAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
16445379 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16445444 TTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
391 TTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
16445509 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGAAGGCCA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCA
16445573 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGA
* * * * * *
16445638 TCG-CTGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGCAATGGTGTCCCGATGAAGAAAAATAT
582 TCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
* * *
16445702 GGCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGTTCCAGTCCGATCTTAGAT
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-----GT----TC------
* *
16445767 TGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAT
696 -GG---T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * * * *
16445832 GAGCGTGCAGGCGCTCAGCCGGACAGAGGGACGAGATTCGCAAGCCGGAGATCGATCGGGTCCCC
750 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
** * *
16445897 CTCTGTGTGCCACCGATCCTGCTGCCACAACCCTCGATCTGGTCCGATC
815 CTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * **
16445946 TTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA----GCGGACGGGCGGAT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16446007 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
16446072 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16446137 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTA-TTTTCATGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
16446201 TTTTTATGTTTCGGGATTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCACAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16446266 TGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
16446331 TTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTAATGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
16446396 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
*
16446461 TATAAGGGCCAAGTACCAGCACCCAAT-GCACATCATGTGCGCACACCCCCCGGCACCCCCCGGT
520 TATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCCGAT
* * * * ** * *
16446525 CGTCGGAACCCCAATGCGGCCAGTCAGGTTCTCCGGCAATGGTGTCCCGGTGAAGAAAAATGCGA
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * * * *
16446590 CACCAGTACATGCCCAAGCCCAGCATGTGCTACCGTAACCCTCGG-TCTAGTTTGATCTTAGACT
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACT
* * *
16446654 GGTAATGAACTCCGTATGCTTAGACTACGAATGAACTCCATATCCTTAAGTCAACCCACAAAATG
712 GGGAATGAACTCCGTATGC-----CT---AA-G---T-CA-A-CC--CA-TGAA---AC-----G
*
16446719 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGA-CGGGTCCCC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCC
* * * * *
16446783 CTCTGCATG-GC-ACCGATCCTGCTGCTGTAACCCTCGGTCCGGTCTGATC
815 CTCTG--TGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16446832 TTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16446897 ACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
16446962 CACATCTTCATATTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16447027 TTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCACGATTTTCGACA
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
16447091 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACATGGTAGAC
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
16447156 GTGATCCATGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16447221 TTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAAGGGCTCCTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
16447286 AAAAATCTCAAATGCCCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
16447351 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* *
16447416 GCCGGAACCCCATTGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* * * * *
16447481 ACCAGCACAGGCCAGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGG
* * * * * * *
16447546 GAATGAAC-ACTTCATGCCTAAGTCAACCCATGGAACGAGCGTGTGGGCGCTCAGCCGACTAAAG
714 GAATGAACTCCGT-ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * * ** * * * *
16447610 GGGCGAGATGCGCAAGGTGGGGATCGGCCGGATCCCCCTCTACGTGCTACCAATCTTGCTGCCAC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
*
16447675 AACCCTAGGTCTGGTCCGATC
843 AACCCTCGGTCTGGTCCGATC
* * *
16447696 TTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGACGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* ** *
16447761 ACAACACCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * *
16447826 CACATCTTCATATTTCTATCATGCCAAAGCCATTTTTCTGGCTTGTTAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
*
16447891 TTAAGCCTTCATGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
** *
16447956 TTTTTACGGTTCG-GAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAG
261 TTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
16448020 GTGATCCGTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
325 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
**
16448085 TTTTGTGATAATTTGAAAAAAGTGTCCCCAATTT-AGACACTTTAATGGCTACTGGCAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
16448149 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
* * *
16448214 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACACACCCCCGATCCCTCCC-
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCG-GCCCCCCCG
* * * * * **
16448278 ATCATGGGAACCCCAATGTCGTCGGTCAGGTTCTTCGGTGATGGTGTCCCGGTGAAGAAAAATAC
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
** * * * *
16448343 GATACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGGTCCGATCTTAGAC
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGAC
* *
16448408 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGTCTAAGTCAACCCACGGAAC
711 TGGGAATGAACT-C-----C---G--T----ATG-----C------CTAAGTCAACCCATGAAAC
* * * *
16448473 GAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCC
750 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* ** * *
16448538 CTCTGCGTGCTGTGGATCCTGCTGCCGCAACCCTCGGTCAGGTCTGATC
815 CTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16448587 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATG-AA--A-----CGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
16448644 ACTACGTCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** * *
16448709 CACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTCTAGCTTGTAATTTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16448774 TTAAGCCTTCATGTGAATTTTCATGGCAAGACGACTCG-TTTCTATTTTTCA-AATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
16448837 TTTTTACGGTTCGAGATTTTTTAAAAT
261 TTTTTACGGTTCGAGATTTTTTAAAAT
16448864 CTGCTTTAAG
Statistics
Matches: 10967, Mismatches: 1234, Indels: 544
0.86 0.10 0.04
Matches are distributed among these distances:
842 3 0.00
843 164 0.01
844 96 0.01
845 192 0.02
846 291 0.03
847 1 0.00
848 1 0.00
849 1 0.00
850 2 0.00
851 2 0.00
852 300 0.03
853 303 0.03
854 145 0.01
855 2 0.00
856 8 0.00
859 2 0.00
860 27 0.00
861 23 0.00
862 351 0.03
863 1219 0.11
864 1446 0.13
865 1272 0.12
866 370 0.03
867 1 0.00
868 4 0.00
869 5 0.00
870 3 0.00
871 2 0.00
872 5 0.00
873 109 0.01
874 47 0.00
875 200 0.02
876 206 0.02
877 114 0.01
878 7 0.00
879 5 0.00
880 285 0.03
881 51 0.00
882 246 0.02
883 388 0.04
884 8 0.00
885 13 0.00
886 604 0.06
887 637 0.06
888 609 0.06
889 101 0.01
890 509 0.05
891 302 0.03
892 184 0.02
893 1 0.00
894 2 0.00
895 3 0.00
897 1 0.00
898 73 0.01
899 21 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (863 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
CCTCGGTCTGGTCCGATC
Found at i:16442538 original size:863 final size:863
Alignment explanation
Indices: 16435505--16452652 Score: 18955
Period size: 865 Copynumber: 19.5 Consensus size: 863
16435495 CTCTATATGG
* * * * * * *
16435505 TTAGACTGGGATTGAACTCCGTATACCTAAGCCAACCGATGAAACGAACAGGCGAGCGGGAGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
16435570 ATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGCTCGTTAGGGTGGTAGGTGGGTTTTGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
16435635 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCACACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * *
16435700 TTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACCCGTTTTCAATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** * *
16435765 TTTTTACGGTTCGGGAACTTTTAAAAATTTTTCAGAAAGAGTTTTGGCCCCAAAATTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
16435830 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
16435895 TTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTTATGGCTACTGGCCA-CAAACCTG
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTG
* **
16435959 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAAGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
16436024 TATAAGGGCCAAGTGCCAGTACCCATCGCACATAATGTGCGCACACCCCCTCCAGG-CCCCCTGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GGCCCCCCCGA
** * * * * * **
16436088 TCGTCAAAACCCCAATGCCGTCCGTCAGGTTCTCCGACGACGGTGTCCCGGCAAAGAAAAATTTG
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* *
16436153 GCAGCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G---TT---C-
*
16436218 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
696 --G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* ** * * * **
16436283 AGCGTGTGGGTACTCAGCCGGCCAGAGGGGCGAGATGCGTAAGCTC-GGGATCGATCGGGTTACC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGACCGGGTCCCC
*** * * * * *
16436347 CTCTGCATGCTGTCGATCTTGCTACCGTAACCCTCAGT-TCGGTCCGATC
815 CTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATC
* *
16436396 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACTA--------GCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * *
16436453 ACTATGCCGGCCAGAGAGGTGGGA-GATGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 ACTACGTCGGCCAGAGAGGCGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * *
16436517 GCACAAT-TTCATATTTCGGCTGTGCCGATGCCATTTTTCTGGCTTGCAAATTCATACAATGGTC
130 GCAC-ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * *
16436581 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTCTTCTATTTTTCACGATTTTTAAA
194 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * * *
16436646 ACTTTTTACGGTTCGGGATTTTTAAAAAATTTTTCAGATAGAGTTCTGGGCCCAAA-TTGGCAGA
259 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* * *
16436710 CATGATCCTTGTATTTTTGTAGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
16436775 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTCGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
16436840 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGGAGGTTTGATGAGGGATAGGGGGCC
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCC
* * * *
16436904 AATAAAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCCCCCGGCTCCCCCAAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
** * * * * *
16436969 CACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGCAATGGTGTCTCGGCGAAGAAAAATACGA
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * *
16437034 CACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGATTG
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGGT----TC--------
*
16437099 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
696 GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* ** * **
16437164 GCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGACGATCGATCGGGTGTCCCT
752 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
* * * ** * * * * *
16437229 TTACGTGCTGCCGATCCTACAACCGCAACCCTCGATCCGATCTGATG
817 CTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * *
16437276 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACAGATGAAACGAGCGGGCGGGCGGGCGGGA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
*
16437341 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
16437406 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * * *
16437471 TTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCCCAATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * **
16437536 TTTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAAGAATTTTGGCCCCGAACTTCTTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16437600 TGATCCTTGTATTTTTCTAGGCATGCA-AAAACAAATTCAGCTAAAAACTCAAACTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16437664 TTGGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
16437729 TAAAATCTCAAATGCTCTTTAA-GGAGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
16437793 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACTCCCCCGGTCCCCCTCGAT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCCCGAT
** * ** * * * *
16437858 CACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGTCTCGAGGAAAAAAAATACGG
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * *
16437923 CACCAGCACATGCTCGAGCCCAGCATGAGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
* * *
16437988 GGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGGCCAGAG
713 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * ** * * *
16438053 GTGTGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCAGCTGCCAC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGC
* * * *
16438118 AATCCTTGGT-TCAGTCTGATC
843 AACCCTCGGTCT-GGTCCGATC
* * * *
16438139 CTAGACTGGGAATGACCTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
16438204 AATATG-CTGGCCAGAGAGGCGGGATTCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
66 ACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
16438268 GCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
130 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * *
16438333 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCGAAA
195 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
16438398 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGG-CCCCAAACTTGGTAGA
* *
16438463 CGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
16438528 TTTTGTGACCATTTGAAAAATGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACAT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** * *
16438593 GTAAAATCTCAAATGCTCTTTAAGGGCATGTGAGTTCTTGAGATTTGATGAGGGATAGGGGG-CA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
16438657 ATTATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCCGGTCCCCCCCGA
519 A-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGA
* * * * *
16438722 TCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGGTATCCCGAAGAAGAAAAATACG
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* * * ** * * * *
16438787 GTACCAACACATGCCCGAGCACAGCATGTGCTGTTGCAACCCTTGGTCCAGTCTGATCTTAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACT
* * * *
16438852 GGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCGTGCGGGCGCTCAACCGGTCAGA
712 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * ** *
16438917 GGGGCAGGATGTGCAACCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCG
777 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT--CCC-C--C-T-CT----AT-GTGCTGCCG
* * * *
16438982 ATCCTGCTGCCACAACCCTCGATCTAGTCCAATC
830 ATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * * **
16439016 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACCAGCGGACGGGTAGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** * * *
16439081 ACTACACCGACCAGAGAGGTGGGAT-CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
16439145 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTAGCATGTAAATTCATACAATGGTCCT
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16439210 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
16439275 TTTTTATGGTTTGAGATTTTTTAAAATTTTTTCAG-ATGAAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAG-AGTTTTGGCCCCAAACTTGGTAGAC
* *
16439339 GTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16439404 TTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
16439469 TAAAATCTCAAATGCTCTTTAAGAGGGTGTTAGTTGTTGAGGTTTGATGAGGGATA-GGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
16439533 T-TGAAGGGCCAAGTGCCAGGACCCTTCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATC
520 TAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * ***
16439597 GTCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGGTGTCCCGACAAAGAAAAACGTGGC
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* *
16439662 ACCTGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----TC--G---G---TT---C---
*
16439727 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-TATGCCTAGGTCAACCCATGAAACGAG
696 G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * * * **
16439791 CGTGCGGGCGCTCAGTCGGCTAGAGGGGTGGGATGCGCAAGTCGAGGATC-AGCAGGATCCCTTT
753 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCT
* * * **
16439855 CTGTGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTAATC
817 CTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16439902 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** *
16439967 ACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16440032 CACATCTTCATATTTCTGCCATGCCAATTCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
*
16440097 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* **
16440161 TTTTTACGGTTC-AGGGTTTTTTAAAATTTTTTCA-AAAGGAGTTTTGGCCCCAAACTTCATAGA
261 TTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGGTAGA
* *
16440224 CGTGATCCTTGTATTTTTGTTGTCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
16440289 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCATCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** * * *
16440354 GTAAAATCTCAAATTATATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCTAGGGTGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
16440419 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGACCGCCCTGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * ** *
16440484 TGTCGGAA-CCCAATGCCGTCGGTCAGGTTCACCCACGATGGTGTCCCGACGAAGAAAAATATGG
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * * * * *
16440548 CATCAGCACATGCCCGAGGCCAGCATGTGCTACCGCAACCCTAGGTCCGATCCGATCTTAGACTA
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
* ** * ** ***
16440613 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAATTGAGCATATGGGCGCTCAGCCGAATAGAG
713 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * ****
16440678 GGGCCGGATGCGTAAGTCGAGAATCTACCGGGTCCCCCTCCGCATGCTGCCGATCCTGCTGCCGC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGC
* * * * *
16440743 AGCCCTCAGTCCGAAT-CAATC
843 AACCCTCGGTCTG-GTCCGATC
* * * *
16440764 TTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAACGGGCAGGTGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16440829 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCAGTGGATCGATAGAGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16440894 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * **
16440959 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
16441024 TTTTTACGGTTCGAGATTTTATAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16441089 TGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16441154 TTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
16441219 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
16441284 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCCCTCGATCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCG
* * * * *
16441349 TCGGAACCCTAATGTC-TCCGATCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATGCGGC
585 TCGGAACCCCAATGCCGT-CGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* * *
16441413 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
* * *
16441478 GAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGG
714 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *** * * * ** **
16441543 GGTGGGATGCGCAAGTTAGGGATCGACCGAGTCCCCCTCTATGAGCTACCGATCCTGCTATCATA
779 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCA
* *
16441608 ACTCTCGGTCTAGTCCGATC
844 ACCCTCGGTCTGGTCCGATC
* * *
16441628 TTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16441693 ACTACATCGGCCAGAGAGGCGGGATGTGGAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16441758 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTTCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16441823 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
16441888 TTTTTACTGTTCGAGATTTTTTTAAATTTTTTCAGAAAGAGTTTTGGCCCCAAATTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16441953 TGATCCTTGTATTTTTGTTGGAATGCACAAAACAATTCAGCTAAAAACTCGAAAGTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGAT
* * *
16442018 TCTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTA
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
16442083 TAGAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
16442148 TATACGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACA-CCCCCGACCCCCCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * * ** **
16442212 TTGGAACCCCGATGTCGTCGTTAAGGTTCTTTGGCGATGGTGTCCCGACGAAGAAAAATGTGGCA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCA
* * * *
16442277 CCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTTCGGTCCGATCTTGGACTGGG
650 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
* * * *
16442342 AATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGA
715 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** * * * *** *
16442407 TTGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTATGAGCTATAGATCCTGCTACCGCAA
780 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAA
16442472 CCCTCGGTCTGGTCCGATC
845 CCCTCGGTCTGGTCCGATC
* * * *
16442491 TTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16442556 ACTACATCGGCCATAGAGGCGGGATGTGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
16442621 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * *
16442686 TTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCA-G------G--A-
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
16442741 ---TT-C-G---G-GATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
*
16442797 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
16442862 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGGAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * * *
16442927 AAAATGTCAAATGCTCTTTAAAGGGGTGTGCGTTCTCAAGGTTTGATGAGGGATAGGGTGCTAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
16442992 ATAAGGGCCAAGTACCAGCACCCATCGTACATCACGTGCGCAAACTCCCCTGGCCCCCCCGGTCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCG
* * * * * * **
16443057 TCGAAACCCTAATGTCGCCGGTTAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCA
* * *
16443122 CCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGG
650 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
* ** *
16443187 AATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
715 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** ** ** * *
16443252 GCGGGATTGCTAAAGCCGGGGATCGACCGGGTCCCCCTCTGGGTATTGCCGATCCTGCCGCCACA
780 GCGGGA-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCA
* * *
16443317 ACCCTCAGTCCGGTCTGATC
844 ACCCTCGGTCTGGTCCGATC
* *
16443337 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
16443402 ACTACGTCGGCCAGAGAGGCGGGATGCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16443467 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
16443532 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
16443597 TTTTTACGGTTCAAAATGTTTTAAAATATTTTGAGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16443662 TGATCCTTGTATTTTTGTTGGCATGCAGAATAACATTCAGCTAAAAACTTGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16443727 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
16443792 AAAATCTCAAATGCTCATTAAGGGGGTTTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
16443857 ATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCCGATC
* * *
16443922 GTCGGAACCCTAATGCCG-CAGGTCAGGTTCTCCGGCGATGGTGTCCC-AGCGAAGAAAAATGCA
584 GTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGTCCCGA-CGAAGAAAAATACG
* * * * * * *
16443985 GCACCAGCACATGCCCGAACCTAGCATGTGCTACCGTAACCCTTGGTTCGGTCTGATCATAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACT
* * * ** * *
16444050 GGGAATGAACTCTGTATGCCTAAGTCAACCTACGAATTGAGCGTGCGGGCGCTCAGTCAGCCAGA
712 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * * **
16444115 GGGGCAGAATGCGCAAGTCGGGGATCGATCGGGTCCCTTTCTGCT-TGCTGCCGATCCTACTATC
777 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-ATGTGCTGCCGATCCTGCTGCC
* *
16444179 GCAACCCTTGGT-TCGATCCGATC
841 GCAACCCTCGGTCT-GGTCCGATC
* ** * *
16444202 TTAGACTGGGAATAAACTCTATATGCCTAAGCCAACCGAGGAAACGAGCGGGCGGGCAGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16444267 ACTACGCCAGCTAGA-AGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
16444331 CACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * **
16444396 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
16444461 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAATTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
16444526 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16444591 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*** *
16444656 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGACACTAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
16444721 ATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGT--GCACA--------CCCCCCCGATCGT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * ** * * ** *
16444776 CGGAACCCCAATGCTGTCGATCAGGTTCTTTGGCGATGGTCTCTCGGTGAAGAAAAATTCGGCAC
586 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
* * * *
16444841 CAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCTTTGG-TCTGATCCGATCTTAGACTGGG
651 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGG
* * * **
16444905 AATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAAAG
715 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** ** * * *
16444970 ACGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCCGCCGATCCTGCTACCACAA
780 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAA
* * *
16445035 CCCTCGATCCGGTCTGATC
845 CCCTCGGTCTGGTCCGATC
* * * * * *
16445054 TTATACTAGGAACGAACTCCGTATGCCGAAGCCAACCGACGGAACGAGCGTGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
*
16445119 ACTACGTCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
16445184 CATATCTACATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16445249 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * ** * *
16445314 TTTTTATGGTTCGTGATTGTTTAAAATTTTTTCAGATGGTGTTTTGGCCACAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
16445379 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
16445444 TTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
391 TTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
16445509 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
16445574 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGAT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGAT
* * * * * *
16445639 CG-CTGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGCAATGGTGTCCCGATGAAGAAAAATATG
583 CGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* * *
16445703 GCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGTTCCAGTCCGATCTTAGATT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-----GT----TC-------
* *
16445768 GGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATG
696 -G----G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * * * *
16445833 AGCGTGCAGGCGCTCAGCCGGACAGAGGGACGAGATTCGCAAGCCGGAGATCGATCGGGTCCCCC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* ** * *
16445898 TCTGTGTGCCACCGATCCTGCTGCCACAACCCTCGATCTGGTCCGATC
816 TCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * * **
16445946 TTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA----GCGGACGGGCGGAT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16446007 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
16446072 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16446137 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTA-TTTTCATGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * ** *
16446201 TTTTTATGTTTCGGGATTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCACAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16446266 TGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
16446331 TTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTAATGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
16446396 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
16446461 TATAAGGGCCAAGTACCAGCACCCAAT-GCACATCATGTGCGCACACCCCCCGGCACCCCCCGGT
520 TATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCCGAT
* * * * ** * *
16446525 CGTCGGAACCCCAATGCGGCCAGTCAGGTTCTCCGGCAATGGTGTCCCGGTGAAGAAAAATGCGA
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGG
* * * *
16446590 CACCAGTACATGCCCAAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTTTGATCTTAGACTG
648 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G---TT---C--
** * ** *
16446655 GTAATGAACTCCGTATGCTTAGACTACGAATGAACTCCATAT-CCTTAAGTCAACCCACAAAATG
696 G----G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAACCCATGAAACG
*
16446719 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGA-CGGGTCCCC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCC
* * * * *
16446783 CTCTGCATG-GC-ACCGATCCTGCTGCTGTAACCCTCGGTCCGGTCTGATC
815 CTCT--ATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16446832 TTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16446897 ACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
16446962 CACATCTTCATATTTCTGCGGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16447027 TTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCACGATTTTCGACA
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
16447091 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACATGGTAGAC
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
* *
16447156 GTGATCCATGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16447221 TTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAAGGGCTCCTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
16447286 AAAAATCTCAAATGCCCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
16447351 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* *
16447416 GCCGGAACCCCATTGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGC
* * * * * *
16447481 ACCAGCACAGGCCAGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGG
649 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
* * * * * * *
16447546 GAATGAAC-ACTTCATGCCTAAGTCAACCCATGGAACGAGCGTGTGGGCGCTCAGCCGACTAAAG
714 GAATGAACTCCGT-ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * * * * * * *
16447610 GGGCGAGATGCGCAAGGTGGGGATCGGCCGGATCCCCCTCTACGTGCTACCAATCTTGCTGCCAC
778 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGC
*
16447675 AACCCTAGGTCTGGTCCGATC
843 AACCCTCGGTCTGGTCCGATC
* * *
16447696 TTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGACGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* ** *
16447761 ACAACACCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * *
16447826 CACATCTTCATATTTCTATCATGCCAAAGCCATTTTTCTGGCTTGTTAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
*
16447891 TTAAGCCTTCATGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
** * *
16447956 TTTTTACGGTTCG-GAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAG
261 TTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
* *
16448020 GTGATCCGTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
325 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
**
16448085 TTTTGTGATAATTTGAAAAAAGTGTCCCCAATTT-AGACACTTTAATGGCTACTGGCAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
16448149 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
16448214 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACACACCCCCGATCCCTCCC-
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCG-GCCCCCCCG
* * * * * **
16448278 ATCATGGGAACCCCAATGTCGTCGGTCAGGTTCTTCGGTGATGGTGTCCCGGTGAAGAAAAATAC
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
** * * *
16448343 GATACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGGTCCGATCTTAGAC
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAC
* *
16448408 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGTCTAAGTCAACCCACGGAAC
711 TGGGAATGAACT-C-----C---G--T----ATG-----C------CTAAGTCAACCCATGAAAC
* * * *
16448473 GAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCC
750 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
** ** * *
16448538 CTCTGCGTGCTGTGGATCCTGCTGCCGCAACCCTCGGTCAGGTCTGATC
815 CTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16448587 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATG-AA--A-----CGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
16448644 ACTACGTCGGCCAGAAAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** * *
16448709 CACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTCTAGCTTGTAATTTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16448774 TTAAGCCTTCATGTGAATTTTCATGGCAAGACGACTCG-TTTCTATTTTTCA-AATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * ** * *** *
16448837 TTTTTACGGTTCGAGATTTTTTAAAATCTGCTTTAAGTAGGACGTGAT-G---TATTTTTTG-AG
261 TTTTTACGGTTCGAGATTTTTTAAAAT-T-TTTTCAGAAAGA-GTTTTGGCCCCAAACTTGGTAG
* * * ** **** * * ** * **
16448897 GCATGTTCAGATG-A-AAGGGATAGG--GGC-CAATATAAGGGTACCAGC-ACCATCGCACATC-
323 ACGTGATC-CTTGTATTTTTG-TTGGCATGCACAA-A-AA-AAT-TCAGCTA--A--AAAC-TCG
* ** ****** * * ****** * *
16448955 ATGTGCGCACCCCCCCTGATCACCCAATTCCTCGGAG-GTTCTCCGGCGATGGTTCCCGGGACGG
377 AAGTGTACA-AGATTTTG-TGA-CCATTTGAAAAAAGTG-TC-CC--C-AT--TT--C-AGAC-A
*** * ** *** * *
16449019 CACAACATGCCAGC-AGCATGTGCTGCCTCACCTTGGTCCGATCGATC--TTGACTAATGTTAAG
428 CTTTA-ATG---GCTA-C-TG-GCAG-CAAACC-T-GTAAAATC--TCAAATG-CT-CT-TTAAG
*** * * * * ** *** * **** *
16449081 GCCAT-TGA-TCCCATTTCAAGCACTTTAATG-GCTACT-GGCATCAAACCTATAAAATTTCAAA
478 GGGGTGTGAGT----TCTCGAG--GTTTGATGAGGGA-TAGGGGGCCAA--TAT-AAGGGCCAAG
* *** * * * *
16449142 TGCTCTTTAAGGCAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTG-GCCAATATAAGGGCCA
533 TAC-C----A-GCA--CCCA--TCGC-A-----CAT----CAT--GTGCG-C---A-CA---CC-
** ** * * * * * *
16449206 AGTACTAGCACCCATCGCAC-ATCATGTGCGCACACCCC-CTGGCC--C-CTCCGATCACCGGAA
567 --CCCCGGC-CCC--C-C-CGATC--GT-CGGA-ACCCCAAT-GCCGTCGGTCAGGT--TC----
* *
16449266 CCCAAATGCCGTCTGTCAGGTTCTCCGGCGATGGTGTCCC-AGCGAAGAAAAATACGACACTAGC
614 -----------------------TCCGGCGATGGTGTCCCGA-CGAAGAAAAATACGGCACCAGC
* *
16449330 ACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
655 ACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G---TT---C--GG--T--
*
16449395 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
699 -C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * ** * ** * *
16449460 GGCGCTCAGCCGGCCAAAAGGGAGGGATGCGCAAGCTAGCGATCGGTCGGGTCCCCTTCTACGTG
759 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTG
* * * * * * *
16449525 CTACCGTTCC-GCTGCCACAACCTTTGGTCCGGTCTGATC
824 CTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* * **
16449564 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA--------ACGGGTAGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * *
16449621 ACTACGCCGACTAGAGAGGCGGGATGCGCAAGCCATAGATTGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** *
16449686 CATATCTTCATATTTCTATCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* ** *
16449751 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTCAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
16449816 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTCGTAGATG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
**
16449881 TGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
16449946 TTGTGACCCTTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
16450011 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGTGATAGGGGGTCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * **
16450076 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCATACCCCCCGGCCCCCCCGATCAC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * *
16450141 CAGAACCCCAATGCCGACGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
586 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
* * * * * * * *
16450206 CAGCACATGCCCGAGTCCAGGATGTGATGCCGCAACCCTCAGTCCAGTTCGATCTTAGAATGGGA
651 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGA
* * * ** * * *
16450271 ATGAACTCCATATGCTTAGATTGGGA---ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTA
716 ATGAACTCCGTATGCCTA-AGT-CAACCCATGAA--ACG-A-GCGT-G-C-GGG--CG--CTC--
* * * **
16450333 TATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCTGGCTAGAGGGGCGGGATGCGC
766 -A-GCC---G----GCCA-G--A-G-G--GGCG-G-GAT--GC--GC-A-AGCCG-GGGAT-CG-
* * * * * * *
16450398 AAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCTTTGATCCG
804 -A-CC-G----------GGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* **
16450463 ATCTAATC
856 GTCCGATC
* * * * * *
16450471 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCATCCGAAGAAACGAGCGGGTGGACGGACGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * *
16450536 ACTACGTCGTCCAAAGTGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16450601 CACATCTTCATATTTCTGTCGTGCCAATGCCA-TTTTCTGGCTTGTAAATTCATACAATGGTCTC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * *
16450665 TTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTTCGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
16450730 TTTTTAGGGTTC-AGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
*
16450794 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16450859 TTTGTTACCTTTTG-AAAAAGCTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
16450923 GTAAAATCTCAAATACTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
16450988 ATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCACACACCCCCCCCGCCCCCCTCCG
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCC-CCG
* *
16451053 ATCGTCGGAACCCCAGTGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATAC
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
* * * * * * *
16451118 GACTCCAGCACATGGCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGAC
646 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAC
* * *
16451183 TGGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACGAGCGTGCGGGCACTCAGCCGGCCAG
711 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *** * * *
16451248 AGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCCCCCTCTGCATACTGCCGATCCTACTACC
776 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCC
* * *
16451313 GTAACCCTCAGTCCGGTCCGATC
841 GCAACCCTCGGTCTGGTCCGATC
* * * * *
16451336 TTAAACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * *
16451401 ACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* **
16451466 CACATCTTCATATTTCTACTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * **
16451531 TTAAGCCTTCATGTGAAATTTCATGGCCAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * **
16451596 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCA-AAAGGAGTTTTGGCCCCAAAAATGGTAGAC
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGGTAGAC
*
16451660 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
16451725 TTTGTGACCTTTTG-AAAAAGCTATCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAAACT
390 TTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
16451789 GTAAAATCTCAAATACTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
16451854 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGCCCCCCTCCGA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CCGA
* * * *
16451919 TCGTCGGAACCTCAATGCCGTTGGTCAGGTTCTCCGACAATGGTGTCCCGACGAAGAAAAATACG
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACG
* * * ** *
16451984 ACTCCAACACATGGTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACT
647 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGG-------TT---C-
*
16452049 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
696 --G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * ** *
16452114 AGCGTGCGGGTGCTCAGCCGGCCAGA-GGGTGGGATGCGTAAGCCGAGGATCGATTGTGTCCCCC
751 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* * ** * * * *
16452178 TCTACGTGCTACCGATCCTATTACCGCAACCCTCGGTCTGATTCGGTC
816 TCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATC
* *
16452226 TTAAACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
16452287 ATTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGG
66 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
16452352 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* * * *
16452417 TTAAGCCTTCATGTGAAGTGTGATGGCAAGACTACTCGTTTTCTATTTTTCACAATTTTTGAAA-
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** ** *
16452481 ATTTTAAAGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGTGCCAAACTTGGTAAACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16452546 TGGTCCTTCTATTTTTGTTGGCATGCACAAAAAATTTTAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
16452611 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
16452653 TGCCTAAGTC
Statistics
Matches: 13955, Mismatches: 1768, Indels: 1074
0.83 0.11 0.06
Matches are distributed among these distances:
843 168 0.01
844 96 0.01
845 192 0.01
846 291 0.02
847 1 0.00
848 1 0.00
849 1 0.00
850 2 0.00
851 2 0.00
852 299 0.02
853 307 0.02
854 175 0.01
855 7 0.00
856 10 0.00
857 3 0.00
858 1 0.00
859 3 0.00
860 4 0.00
861 22 0.00
862 349 0.03
863 1224 0.09
864 1482 0.11
865 1567 0.11
866 753 0.05
867 6 0.00
868 5 0.00
869 3 0.00
870 5 0.00
871 4 0.00
872 5 0.00
873 105 0.01
874 50 0.00
875 202 0.01
876 208 0.01
877 117 0.01
878 10 0.00
879 27 0.00
880 361 0.03
881 51 0.00
882 254 0.02
883 405 0.03
884 15 0.00
885 163 0.01
886 854 0.06
887 648 0.05
888 615 0.04
889 109 0.01
890 597 0.04
891 376 0.03
892 189 0.01
893 2 0.00
894 4 0.00
895 4 0.00
896 10 0.00
897 3 0.00
898 70 0.01
899 24 0.00
900 3 0.00
901 3 0.00
902 4 0.00
903 4 0.00
904 8 0.00
905 3 0.00
906 35 0.00
907 81 0.01
908 1 0.00
909 10 0.00
910 11 0.00
911 11 0.00
912 4 0.00
913 17 0.00
914 368 0.03
915 92 0.01
916 16 0.00
917 136 0.01
918 5 0.00
919 3 0.00
920 1 0.00
921 2 0.00
923 3 0.00
924 5 0.00
925 1 0.00
926 2 0.00
929 2 0.00
930 2 0.00
933 2 0.00
934 1 0.00
935 4 0.00
936 3 0.00
938 2 0.00
939 1 0.00
940 3 0.00
941 2 0.00
942 1 0.00
943 1 0.00
944 3 0.00
945 1 0.00
946 8 0.00
947 4 0.00
948 11 0.00
949 10 0.00
950 8 0.00
951 4 0.00
952 14 0.00
953 6 0.00
954 3 0.00
955 7 0.00
956 1 0.00
957 4 0.00
958 2 0.00
959 2 0.00
960 3 0.00
961 1 0.00
963 3 0.00
964 2 0.00
965 3 0.00
966 1 0.00
968 2 0.00
970 2 0.00
973 2 0.00
974 8 0.00
975 3 0.00
976 6 0.00
977 239 0.02
978 164 0.01
979 40 0.00
980 12 0.00
981 13 0.00
982 4 0.00
983 3 0.00
984 5 0.00
987 1 0.00
989 3 0.00
990 1 0.00
993 2 0.00
995 3 0.00
997 1 0.00
998 1 0.00
1000 1 0.00
1002 2 0.00
1003 3 0.00
1004 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (863 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAAC
CCTCGGTCTGGTCCGATC
Found at i:16445789 original size:26 final size:26
Alignment explanation
Indices: 16445760--16445812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16445750 CCAGTCCGAT
*
16445760 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
16445786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16445812 C
1 C
16445813 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16446212 original size:26 final size:25
Alignment explanation
Indices: 16446175--16446231 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
16446165 AGACGAGTCG
* * *
16446175 TTTTCTATTTTCATGATTTTTGAAAC
1 TTTT-TATTTTCAGGATTTTTAAAAA
*
16446201 TTTTTATGTTTCGGGATTTTTAAAAA
1 TTTTTAT-TTTCAGGATTTTTAAAAA
16446227 TTTTT
1 TTTTT
16446232 TCAGATGGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.60
Consensus pattern (25 bp):
TTTTTATTTTCAGGATTTTTAAAAA
Found at i:16448430 original size:26 final size:26
Alignment explanation
Indices: 16448401--16448452 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16448391 CCGGTCCGAT
16448401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16448427 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16448453 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16449415 original size:26 final size:26
Alignment explanation
Indices: 16449379--16449431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16449369 CTGGTCTGAT
*
16449379 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16449405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16449431 C
1 C
16449432 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16450288 original size:26 final size:26
Alignment explanation
Indices: 16450259--16450337 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16450249 CCAGTTCGAT
16450259 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
16450285 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
16450311 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
16450337 C
1 C
16450338 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:16452070 original size:26 final size:26
Alignment explanation
Indices: 16452041--16452093 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16452031 CCGGTCCAAT
16452041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16452067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16452093 C
1 C
16452094 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16454418 original size:26 final size:26
Alignment explanation
Indices: 16454378--16454430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16454368 CTGGTCTGAT
*
16454378 CTTAGACTGGAAATGAAGTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
16454404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16454430 C
1 C
16454431 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16454529 original size:887 final size:884
Alignment explanation
Indices: 16452651--16455287 Score: 3620
Period size: 887 Copynumber: 3.0 Consensus size: 884
16452641 TCAGACACTT
* * *
16452651 TATGCCTAAGTCAACCCACGAAAAGAGTGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCA-
1 TATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATG-AG
* ** * *
16452715 CAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGTTGATCCTGCTATCGCAACCCTCT-ATC
65 CAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCT-TGGTC
* * *
16452779 CGCTCTGATCTTAGACTAGGAATGAACTCCGTCTGCCTAAGCCAACCGACGAAACGAGCGGGC--
129 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
16452842 G-GGCGGGCACTACCCCGGCCAGG-GAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGG
194 GCGGCGGGCACTTCGCCGGCC-GGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
16452905 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCATGTAAATTCAGA
258 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATA
*
16452970 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAGTTTT-TATTTTTCATG
323 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACG
* *
16453034 ATTTTTGAAACTTTTTATGGTTTCGGGTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCTAAA
387 ATTTTTGAAACTTTTTAAGG-TTCGGGTTTTTTAAAATTTTTTCAGAAGGATTTTT-GCCCCAAA
* *
16453099 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAG
450 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* * *** *
16453164 TGTACAAGATTTTGTGACCTTTTTAAAAACCCGTCCCCATTTCAGACACTTTAATTGCTACTGGC
515 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
16453229 AGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
580 AGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * *
16453294 AGGGGGCCAATACAAGGGCCAAGTGCCAGCACTCATCGTACATCATGTGCGTACAGCCCCCCCGG
644 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA--CCCCCCGG
* ** * * ** *
16453359 GCCCCCCCGATCGCCGGAACCCCAATGTTGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGTA
707 ACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAA
*
16453424 GAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCG
772 G-AAAATAC-GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCG
* * *
16453489 ATCTTAGACTAGGAAA-GAACTTCGTTTGCTTAGACAGGGAATGATCTCCG
835 ATCTTAGACT-GGAAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCG
* * * *
16453539 TATGCCTAAGTCAACCCACGAAATGATCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGAGC
* * * **
16453604 AAGTCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCG
66 AAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCTTGGTCCG
* *
16453669 GTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGC
131 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
16453734 GTGCGGGCACTTCGCCGACCGGAGAGGCGAGATGGGCATGCCATGGATCGATAGGGTGGTAGGTT
196 G-GCGGGCACTTCGCCGGCCGGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
16453799 GGTTTAGGCACATCTTCATATTTTTACCGTGCCAATCCCATTTTTTTGGCTTGTAAATTCATACA
260 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACA
* *
16453864 ATGGTCCCTTAAGGCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AGT
325 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-T
* *
16453928 TTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCAAACTT
389 TTTTGAAACTTTTTAAGGTTCG-GGTTTTTTAAAATTTTTTCAGAAGGATTTTTGCCCCAAACTT
*
16453993 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
453 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
* *
16454058 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCA-T
518 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
16454122 AAACCTATAAAATCTCAAATGCTCTTTAAGCGGGTGTCAGTTCTCAAGGTTTGATAAGGGATAGG
583 AAACCTATAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * * * *
16454187 GGGCCAATATAAGTGCCAAGTACAAGCACCCATCGCACATCATGTGCGCATACCCCCC-GACTCC
647 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGACCCC
* * * *
16454251 TCCGATCGCTGGAACCCTAATGCCACCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAGAA
712 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGA-AA
* * * * *
16454316 ATACGACACCAGCACATGCTCGAGCCCAACATGTGCTGCCAAAACCCTTGGTCTGGTCTGATCTT
776 ATACG-CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTT
* *
16454381 AGACTGGAAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCG
840 AGACTGGAAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCG
* *
16454426 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGCCAGAGGGGTGGGATGAGC
1 TATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGAGC
* * * * * * ** * *
16454491 AGGCCAAGCATCGGCCGGTTCCCCCTCTGTGTGCTGCCGATCCTTTTATCACAACCCTTGGTCTG
66 AAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCTTGGTCCG
* * *
16454556 GTCTAATTTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAGCGGGCGGGC
131 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
** * * * *
16454621 AGGCAAGCAC-TAGACCGGCCAGAGAGGC-AGGATGCACAAGCCGTGGATCGATAGGGTGGCAGG
196 -GGCGGGCACTTCG-CCGGCCGGAGAGGCGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** * *
16454684 TGGGTTTAGGCACATCTTTATATTCCTGCCCTGCCAATGCCATTTTTTTTGCTTGTAAATTCATA
258 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATA
* * *
16454749 AAACGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
323 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
16454814 TTTTGGAAACTTTTTACGGTTCGGGGTTTTTTTAAATTTTTTCAGATGGATTTTTTGCCCCAAAC
388 TTTTTGAAACTTTTTAAGGTTC-GGGTTTTTTAAAATTTTTTCAGAAGGA-TTTTTGCCCCAAAC
* * * * *
16454879 TTGGT--ACTTAATCCTTTTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTTAAAGT
451 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
16454942 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
516 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
16455007 GCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGATTGATGAGGGATA
581 GCAAACCTATAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * *
16455072 GGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGTACATCATGTGCGTACACCCCCCCGGCC
645 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCGGAC
* * * *
16455137 CCCCCCGATCGCCGAAACCCCAATGCCGCCAGTCAGGTTCTTCGGTGATGGTGTCCCGGTGAAGA
709 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGA
* * * * *
16455202 AAAT---TA-CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCT
774 AAATACGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCT
*
16455263 TAGACTGGGAATGAACTCCGTATGC
839 TAGACTGGAAATGAACTCCGTATGC
16455288 CTAAGCCGAC
Statistics
Matches: 1540, Mismatches: 185, Indels: 53
0.87 0.10 0.03
Matches are distributed among these distances:
883 69 0.04
884 1 0.00
886 126 0.08
887 624 0.41
888 206 0.13
889 59 0.04
890 105 0.07
891 141 0.09
892 209 0.14
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
TATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGAGC
AAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCTTGGTCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGCGGGCACTTCGCCGGCCGGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTAAGGTTCGGGTTTTTTAAAATTTTTTCAGAAGGATTTTTGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTATAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGACCCCCCCG
ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAATACG
CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTG
GAAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCG
Found at i:16455996 original size:26 final size:26
Alignment explanation
Indices: 16455967--16456017 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16455957 TGGTTTGATC
*
16455967 TTAGACTGGGAATGAACTTTGTATGT
1 TTAGACTGGGAATGAACTCTGTATGT
16455993 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
16456018 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGT
Found at i:16458184 original size:882 final size:886
Alignment explanation
Indices: 16455240--16458682 Score: 4687
Period size: 890 Copynumber: 3.9 Consensus size: 886
16455230 TGTGCTGCTG
* *
16455240 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGATGAA
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
16455305 AAGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTAGATCGA
66 ATGA---GGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * * *
16455370 TAGAGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTAGCT
128 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
*
16455435 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
16455500 TATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTCTCAGAAGGAGTT
258 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTT
* *** *
16455565 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGATGTGCACAAAACAATTCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * *
16455630 AAAAGTCAAAGTGTACAAGATTTGGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
16455695 TGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
16455760 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
16455825 ACCCCCCAGCACCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCGGGTTCTCCTGCGATGGTG
583 ACCCCCCAGC-CCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTG
* * * * * *
16455889 TC-CAAGGGAAGAAAAATACGGCACTAGCACATGCCCGAGCGCAGCATGTGCTGTCGCAACCGTC
646 TCTCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* ** * * *
16455953 AGTCTGGTTTGATCTTAGACTGGGAATGAACTTTGTATGTTTAGACTGGGAATGAACTCTGTATG
710 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
16456018 CCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATGCGCAAGC
775 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGC
* * * ** * *
16456083 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCAACTACCG
840 CGGGGATCGATCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCA
* * *
16456130 TAACCCTCGGTCTGATCCAATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * *
16456195 ATGAGCGGGCGGGCAGGCGGGCACTACGCCGGCAAGAGAGGCGGGATACGCAAGCCGTGGATCGA
66 ATGA---GGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
*
16456260 TAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
128 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
16456325 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
16456390 TATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
258 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTT
* *
16456455 TTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * ***
16456520 AAAACTTGAAGCGTACAAGATTTTGTGACCTTTTGAAAAGCCTGTCCCCATTTCAGACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16456585 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
16456650 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGGATATCATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * ** ** * * ** **
16456715 ACCCCCCCGACCCCTCGATCACCGAAACCCCAACACCACCGATCAGGTTCTCCGATGATGGCATC
583 ACCCCCCAGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTC
* * * *
16456780 CCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAA-CC-C--T
648 TCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
16456841 C--G---G----T---CT-GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCT
713 CTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * *
16456884 AAGTCAACCCACGAAATGAGCATGCGAGCGCTCAACTGGCCAGAGGGGCGGGATGCGTAAGTCGG
778 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGG
* * *
16456949 GGATCGATTGGGTCCCCCTCTG-TGTGCTGTCAATCCTGCTGCCA
843 GGATCGATCGGGTCCCCCTCTGCT-TGCTGCCGATCCTGCTGCCA
** * * * *
16456993 CAA-CCTCTATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * * *
16457057 ATGAGCGGGAGGGCGGGCGGACACTACGTCGGCCAAAGAGGCGGGATGCACAAGCCATGGATTGA
66 ATGA---GGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
16457122 TAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCT
128 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCT
* *
16457187 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTT
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * *
16457252 TATTTTTCATAATTTTTGAAACTTTTTACGGTGCGGGATTTTTTAAAATTTTTTCAGAAATAGTT
258 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTT
* ** *
16457317 CTATCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-A-GTAACAAAAAAATTCAGCT
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CACAAAAAAATTCAGCT
*
16457380 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTA
387 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
16457445 ATGGGTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGT
452 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
16457510 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
16457575 CA-CCCCCGGCCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGT
582 CACCCCCCAGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGT
** * * *
16457639 CTCGGTGAGGAAAAATACAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
647 CTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** * * * * *
16457704 TCTGAACCAATCTTAGTCTGGTAATGAACTCCGTATGCTT-GACTGGCAATGAACTCCGTATGCC
712 TCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
16457768 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCAGAGGGACGGGATGCACAAGCCG
777 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCG
* **
16457833 GGGATCGACCATGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCA
842 GGGATCGATCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCA
* * * *
16457878 CAACACTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
16457943 ATGA-GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATTGATAG
66 ATGAGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
16458007 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
* *
16458072 AAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTGTTCTAT
196 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * *
16458137 TTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT-AGAAAGGGTTTTG
261 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
* *
16458201 GCCCCAAACTTAGTAGACGAT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAA
326 GCCCCAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
16458265 AACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATG
390 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
16458330 GCTACTAGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
16458395 ATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACAC
520 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * * * *
16458460 CCCTCCCAGCCCCCCTCGATCGGT-GGAACCCTAATGTCGCCAGTCAGGTTCTCCAGCGATGGTG
584 CCC-CCCAGCCCCCC-CGATC-GTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTG
* * ** **
16458524 TCTCGACGAAGAAAAATACGGCACCAGTACATGCCAGAGCCCAGCATGTGCAACCTTAACCCTCG
646 TCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
16458589 GTCCGGTCCGATCTTCGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACAT-CGTATG
711 GTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC-TCCGTATG
* * * * *
16458653 CGTAAGCCAACCGATGAAATGAGCGGGCGG
775 CCTAAGCCAACCCACGAAACGAGCGTGCGG
16458683 ACGGGCAGGC
Statistics
Matches: 2244, Mismatches: 267, Indels: 87
0.86 0.10 0.03
Matches are distributed among these distances:
860 98 0.04
861 202 0.09
862 334 0.15
863 115 0.05
864 4 0.00
865 1 0.00
867 1 0.00
870 1 0.00
872 2 0.00
873 3 0.00
876 3 0.00
877 1 0.00
879 1 0.00
880 1 0.00
881 45 0.02
882 426 0.19
883 3 0.00
884 3 0.00
885 130 0.06
886 187 0.08
887 45 0.02
888 2 0.00
889 85 0.04
890 551 0.25
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ATGAGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCAGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCTCG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGA
TCGATCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCA
Found at i:16459363 original size:733 final size:728
Alignment explanation
Indices: 16457899--16459397 Score: 2237
Period size: 733 Copynumber: 2.1 Consensus size: 728
16457889 CTGGTCCAAT
* * *
16457899 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATGAGTGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGGGGGCGGGCAGGCACT
* * * * *
16457964 ACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAGGCAC
*
16458029 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
* *
16458094 AGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTGTTCTATTTTTCACGATTTTCAAAACTTT
196 AGCCTTCATGTCAAGTTTCATGGCAAGACAACTCGTGTTCTATTTTTCACGATTTTCAAAACGTT
*
16458159 TTACGGTTCAGGATTTTTTAAAATTTTTTAGAAAGGGTTTTGGCCCCAAACTTAGTAGACGATAT
261 TTACGGTTCAGGATTTTTTAAAATTTTTTAGAAAGGGTTTTCGCCCCAAACTTAGTAGACGATAT
16458224 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
16458289 GACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGTAGCAAACCTATAAAA
391 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAA
16458354 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAA
456 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAA
* * *
16458419 GGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCTCCCAGCCCCCCTCGATCGGT
521 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCCAGCCCCCCTCGATCGAT
* * * * *
16458484 GGAACCCTAATGTCGCCAGTCAGGTTCTCCAGCGATGGTGTCTCGACGAAGAAAAATACGGCACC
586 GGAACCCAAATGCCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATACGACACC
* ** *
16458549 AGTACATGCCAGAGCCCAGCATGTGCAACCTTAACCCTCGGTCCGGTCCGATCTTCGACTGGGAA
651 AGCACATGCCAGAGCCCAGCATGTGCAACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
16458614 TGAACTCTGTATG
716 TGAACTCTGTATG
*
16458627 CTTAGACTGGGAATGAACAT-CGTATGCGTAAGCCAACCGATGAAATGAGCGGGCGGACGGGCAG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGATGAAATGA--GGG-GG-CGGGCAG
*
16458691 GCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTA
61 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTA
* *
16458756 TGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAGTGGT-
126 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * * * **
16458820 CCTCTAAGCCTTCATGTGAGGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGA
191 CCT-TAAGCCTTCATGTCAAGTTTCATGGCAAGACAACTCGTGTTCTATTTTTCACGATTTTCAA
* * * *
16458885 AACGTTTTACGGTTC-GAGATTTTTTAAAATTTTTTTCG-AAGGAGTTTTCTCCCCAACCTTGGT
255 AACGTTTTACGGTTCAG-GATTTTTTAAAA-TTTTTTAGAAAGG-GTTTTCGCCCCAAACTTAGT
* *
16458948 AGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTAC
317 AGACGAT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
* *
16459012 AAGATTTTGTGACCATTTGAAAAAAATGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGC
381 AAGATTTTGTGACCATTTG-AAAAAA-GTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGC
*
16459077 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G
444 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATG
* * *
16459141 GGGACCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACATCCCC-CCC-GG
509 GGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCTCCCAGC
* * *
16459204 CCCCC-CGATC-ATCGGAACCCAAATGCCACCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAA
572 CCCCCTCGATCGAT-GGAACCCAAATGCCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAA
* * * * *** *
16459267 GAAAAATGCGACGCCAGCACATTCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCG
636 GAAAAATACGACACCAGCACATGCCAGAGCCCAGCATGTGCAACCGCAACCCTCGGTCCGGTCCG
16459332 ATCTTAGACTGGGAATGAACT-TCGTATG
701 ATCTTAGACTGGGAATGAACTCT-GTATG
*
16459360 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
16459398 CACGAAACGA
Statistics
Matches: 693, Mismatches: 61, Indels: 29
0.89 0.08 0.04
Matches are distributed among these distances:
728 44 0.06
729 1 0.00
730 2 0.00
731 6 0.01
732 214 0.31
733 262 0.38
734 15 0.02
735 145 0.21
736 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (728 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGGGGGCGGGCAGGCACT
ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTCAAGTTTCATGGCAAGACAACTCGTGTTCTATTTTTCACGATTTTCAAAACGTT
TTACGGTTCAGGATTTTTTAAAATTTTTTAGAAAGGGTTTTCGCCCCAAACTTAGTAGACGATAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCCAGCCCCCCTCGATCGAT
GGAACCCAAATGCCACCAGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATACGACACC
AGCACATGCCAGAGCCCAGCATGTGCAACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
TGAACTCTGTATG
Found at i:16459370 original size:26 final size:26
Alignment explanation
Indices: 16459334--16459386 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16459324 CTGGTCCGAT
*
16459334 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16459360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16459386 C
1 C
16459387 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16460250 original size:26 final size:26
Alignment explanation
Indices: 16460221--16460273 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16460211 CCAATCCGAT
16460221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16460247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16460273 C
1 C
16460274 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16460437 original size:887 final size:886
Alignment explanation
Indices: 16458627--16461133 Score: 3793
Period size: 887 Copynumber: 2.8 Consensus size: 886
16458617 ACTCTGTATG
* * * *
16458627 CTTAGACTGGGAATGAACAT-CGTATGCGTAAGCCAACCGATGAAATGAGCGGGCGGACGGGCAG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGG
*
16458691 GCACTACGCCGG-TCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGG-AGGTAGGTGGGTT
65 GCACTACGCCGGCT-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTA-GTAGGTGGGTT
* * * *
16458754 TATGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAGTGG
128 TAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* * *
16458819 TCCTCTAAGCCTTCATGTGAGGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTG
193 TCCT-TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
* ** *
16458884 AAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTCTCCCCAACCTTGGT
257 AAACCTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
16458948 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
16459013 AGATTTTGTGACCATTTGAAAAAAATGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCA
386 AGATTTTGTGACCATTTG-AAAAAA-GTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCA
16459078 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
16459143 GACCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACATCCCCCCCGGCCCC
514 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCC
* * * *
16459208 CCGATC-ATCGGAACCCAAATGCCACCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAA
577 CCGATCGAT-GGAACCCAAATGCCGCTGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAAAAAA
* * * *
16459272 ATGCGACGCCAGCACATTCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTT
641 ATGCGGCACCAGCACATTCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* *
16459337 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
705 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACG
* * *
16459402 AAACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGCCGGGATGCAAAAGTCGGGGATCGATCGAGT
770 AAACAAGCGTACGGGCGCTCAGCTGGCCAGAGGGCCGGGATGCAAAAGCCGAGGATCGATCGAGT
* * * **
16459467 CCCCCTCTGCGTGCTGCTGATCTTGCTACCACAACCTTCGATCCGGTTTGAT
835 CCCCCTCTACGTGCTGCCGATCTTGCTACCACAACCCTCGATCCGGTCCGAT
*
16459519 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
16459584 CACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAG
66 CACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAG
* * *
16459649 GCACTTCCTCATATTTCTGCCGTGCCATTGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT-C
*
16459714 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
195 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
* * *
16459779 CCCTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGAC
260 CCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
16459844 GTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
16459908 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
16459973 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
16460038 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCGATCGG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGA
* * *
16460103 TGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAAAAAAATGTGGCAC
585 TGGAACCCAAATGCCGCTGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAAAAAAATGCGGCAC
* * ** * **
16460168 CAGTAAAGGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGGGA
650 CAGCACATTCCCGAGCC-AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
16460233 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCG
714 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCG
* * * * *
16460298 TGCGGGTGCTCAGCCT-GCCAGAAGGG-CGGGATG-AGCAAGCCGAGGATCG-GCTGGGTCCCCC
779 TACGGGCGCTCAG-CTGGCCAG-AGGGCCGGGATGCA-AAAGCCGAGGATCGATC-GAGTCCCCC
* * * * *
16460359 TCTACGTGTTGCCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGAT
840 TCTACGTGCTGCCGATCTTGCTACCACAACCCTCGATCCGGTCCGAT
* *
16460406 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
16460471 TACTACGCCAGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAG
* *
16460536 GCACATATTCATATTCCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTGC
131 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT-C
*
16460601 TTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
195 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
* * * * *
16460666 CTTTTTTA-GGTTCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTCGTAGA
260 C-CTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
16460730 CGTGATCCTTGTATTTTTGTAGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
16460795 TTTTGTGACTATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCT-CTGGCAGCAAACTT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
16460859 GTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
16460924 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATC
* *
16460989 GTTGGAACCCGAATGCCG-TCGGTCAGGTTCTCCGGCGATGGTGTCCCGAC-AAAGAAAAATGCG
583 GATGGAACCCAAATGCCGCT-GGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAA-AAAAATGCG
* * **
16461052 GCACCAACACATTCTCGAGGCCAGCATGTTTTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
646 GCACCAGCACATTCCCGA-GCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
16461117 -GGAATGAACTCCGTATG
710 GGGAATGAACTCCGTATG
16461134 TCGTAACGAT
Statistics
Matches: 1477, Mismatches: 121, Indels: 39
0.90 0.07 0.02
Matches are distributed among these distances:
886 4 0.00
887 730 0.49
888 214 0.14
889 151 0.10
890 6 0.00
891 67 0.05
892 300 0.20
893 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
CTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGAT
GGAACCCAAATGCCGCTGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAAAAAAATGCGGCACC
AGCACATTCCCGAGCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCGTA
CGGGCGCTCAGCTGGCCAGAGGGCCGGGATGCAAAAGCCGAGGATCGATCGAGTCCCCCTCTACG
TGCTGCCGATCTTGCTACCACAACCCTCGATCCGGTCCGAT
Found at i:16462137 original size:16 final size:16
Alignment explanation
Indices: 16462113--16462175 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
16462103 GGATTTTTTT
*
16462113 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16462129 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
16462146 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
16462161 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16462176 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16462183 original size:33 final size:33
Alignment explanation
Indices: 16462118--16462186 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
16462108 TTTTTAGGAC
*
16462118 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
16462151 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
16462184 TTT
1 TTT
16462187 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:16462718 original size:38 final size:38
Alignment explanation
Indices: 16462663--16462762 Score: 119
Period size: 38 Copynumber: 2.6 Consensus size: 38
16462653 GGTCAACGTT
* * * *
16462663 GGTCCGGGCGGTCTGACCGGTTCAGTAGTTGGATCGGC
1 GGTCCGGGCGATCTGACCGGTTCAGCAGTCGGATCGAC
* * * *
16462701 GGTTCGGGCGATTTGACCGGTTCGGCGGTCGGATCGAC
1 GGTCCGGGCGATCTGACCGGTTCAGCAGTCGGATCGAC
*
16462739 GGTCCGGGCAATCTGACCGGTTCA
1 GGTCCGGGCGATCTGACCGGTTCA
16462763 ATCCGGTACA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.12, C:0.25, G:0.40, T:0.23
Consensus pattern (38 bp):
GGTCCGGGCGATCTGACCGGTTCAGCAGTCGGATCGAC
Found at i:16462903 original size:27 final size:26
Alignment explanation
Indices: 16462873--16462923 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16462863 CGGATCCTTC
*
16462873 TTTAGTTAAAACGGCGTCGTTTTGGGT
1 TTTA-TTAAAACGACGTCGTTTTGGGT
*
16462900 TTTATTGAAACGACGTCGTTTTGG
1 TTTATTAAAACGACGTCGTTTTGG
16462924 CTATTGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.20, C:0.12, G:0.27, T:0.41
Consensus pattern (26 bp):
TTTATTAAAACGACGTCGTTTTGGGT
Found at i:16463371 original size:16 final size:17
Alignment explanation
Indices: 16463339--16463383 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
16463329 ATTTTTTTAT
* *
16463339 TTTTGTTTCTGTTTTGG
1 TTTTGTTTTTTTTTTGG
16463356 TTTT-TTTTTTTTTTGG
1 TTTTGTTTTTTTTTTGG
16463372 TTTTGTTTTTTT
1 TTTTGTTTTTTT
16463384 ACGTCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (17 bp):
TTTTGTTTTTTTTTTGG
Found at i:16463575 original size:24 final size:24
Alignment explanation
Indices: 16463548--16463625 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
16463538 TATAGGGTGG
* **
16463548 TTGGTCGGATAGTTGGTAAGGTAA
1 TTGGTCGGAGAGTTGGTTGGGTAA
16463572 TTGGTCGGAGAGTTGGTTGGGTAA
1 TTGGTCGGAGAGTTGGTTGGGTAA
*
16463596 TTGGTCGGGGAGTTGGTTGGGTAA
1 TTGGTCGGAGAGTTGGTTGGGTAA
16463620 TTGGTC
1 TTGGTC
16463626 AGGGCAGTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.17, C:0.05, G:0.44, T:0.35
Consensus pattern (24 bp):
TTGGTCGGAGAGTTGGTTGGGTAA
Found at i:16463623 original size:12 final size:12
Alignment explanation
Indices: 16463584--16463624 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
16463574 GGTCGGAGAG
16463584 TTGGTTGGGTAA
1 TTGGTTGGGTAA
* * *
16463596 TTGGTCGGGGAG
1 TTGGTTGGGTAA
16463608 TTGGTTGGGTAA
1 TTGGTTGGGTAA
16463620 TTGGT
1 TTGGT
16463625 CAGGGCAGTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.12, C:0.02, G:0.46, T:0.39
Consensus pattern (12 bp):
TTGGTTGGGTAA
Found at i:16464010 original size:48 final size:48
Alignment explanation
Indices: 16463896--16464332 Score: 504
Period size: 49 Copynumber: 8.9 Consensus size: 48
16463886 ACAGAAAAGG
* * *
16463896 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAAATCTCATTTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCT-GAAAAA
* *
16463945 GCTCCTTTCAACAGAGGCTCCACAAGTTTAAAAATCTCATCTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAA
* * *
16463993 GCTCCTCTTAGCAGAGGCTCAACAACTTT-AAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCT-GAAAAA
16464041 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG----AAAAA
* * *
16464093 GCTCCTCTCAGCAGAGTCTCCACAACTTTAAAAATTCTC-TCTTAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-T-GAAAAA
* * * * * *
16464143 ACTCCTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATTTGGAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAA
*
16464191 GCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGAAAAA
* * * *
16464240 GCTCCTCTCAACAAAAGCTCAACAACTTTAAAAATTCTAATCTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGAAAAA
* *
16464289 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAATTTCTCATCTG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATCTCATCTG
16464333 TTTTCAAATT
Statistics
Matches: 333, Mismatches: 41, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
47 12 0.04
48 108 0.32
49 131 0.39
50 38 0.11
52 32 0.10
53 8 0.02
54 4 0.01
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.27
Consensus pattern (48 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAA
Found at i:16467914 original size:26 final size:26
Alignment explanation
Indices: 16467872--16467924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16467862 CTGATCTGAT
*
16467872 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16467898 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16467924 C
1 C
16467925 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16468622 original size:26 final size:26
Alignment explanation
Indices: 16468593--16468645 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16468583 CTGGTCCGAT
16468593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16468619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16468645 C
1 C
16468646 CTAATCAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16469500 original size:26 final size:26
Alignment explanation
Indices: 16469464--16469516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16469454 CTGGTCCAAT
*
16469464 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
16469490 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
16469516 C
1 C
16469517 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:16470336 original size:890 final size:884
Alignment explanation
Indices: 16467898--16473028 Score: 6438
Period size: 886 Copynumber: 5.8 Consensus size: 884
16467888 ACTCCGTATG
* * * * * *
16467898 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-A---AGC-GTGCGGGCAC
1 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAGCGGGCGGGGCGGGCAC
* * * *
16467958 TTA-ACCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 -TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
16468022 ACATCTTCATAATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
130 ACATCTTCA-AATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCT
16468087 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
194 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
16468152 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCTCGAAACTT-GTAGATGT
259 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
16468216 GATCCTTGTATTTTTGTTGGCATGCACAGAACAATTCAGCTAAAAACTCGAAGTGTACAA-ATTT
324 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
16468280 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
16468345 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
16468410 TAAGGGCCAAGCACCAGCACCCATCGGACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGC
* * * *
16468474 TCGAAACCCCAATGCCGCCAGCCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCA
583 T-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCA
** * * * * * * *
16468539 CCAAAACATTCTCGAGACCAGCATCTCCTCCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
647 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGG
*
16468604 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-TCAACCCATGAAACAAGC
712 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * * * * *
16468668 GTGCGGGCACTCAACCGGCCAGAGGGGCAGAACGCGCAA-ATCGAGGATCAG-CTGCGTCCCCCT
777 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGGTC-GGGTCCCCCT
* * * ** * * *
16468731 CTGCGTGCTACTGATCCTGTTATTGGAACGCTTGATCTAGTCTGAT
840 CTGCGTGCTACCGATCCTGCT-GTACAACCCTTGGTCTGGTCTGAT
* * * *
16468777 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC-GGGCGGGCAC
1 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAGCGGGCGGGGCGGGCAC
*
16468837 TACGCCGGCCAGAGAGGCGGGATGCCGCAAGCCAT-GATCGCATAAGGGTTGGTAGGTGGGTTT-
66 TACGCCGGCCAGAGAGGCGGGATG-CGCAAGCCGTGGATCG-AT-AGGG-TGGTAGGTGGGTTTA
* * * *
16468900 GGCACATCTTCATATTCT-CCATGCCAATGCCTATTTTTTTGGCTTGAAAATTCATAC-ATGG-A
127 GGCACATCTTCAAATTCTGCCATGCCAATGCC-ATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * * * * *
16468962 CCTTAAGCCTTCATGTGAAAGTTTCTTGGCAAGATGTCTTGTTTTCTATTTTCCACCATTTTTGA
191 CCTTAAGCCTTCATGTG-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*** * * * **
16469027 AAC-TTTTACGGTTCTAAATTTTTTAAAATTTTTTTAGAAAGATTTTTTCCCGCCAAACTTGGGT
255 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC-CCAAACTT-GGT
* * *
16469091 AGACGTGCATCCTTGTA-TTTTATGGTGCAATGCACAAAAAAAATTCAGCTAAAAAATC-AAGTG
318 AGACGTG-ATCCTTGTATTTTTTTTG-GC-ATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTG
**
16469154 TACAAGA-TTTGTTTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGGCTACTGGGG
379 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACT--GG
* * *
16469218 CAGC-AACCTGTAACATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGA
441 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
16469282 TAGGGGGCCAATATAAGGGCCAGGTTCCAG----CA---C-C--CA--T-CGCACACCCCCCGGC
506 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
16469334 CCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCACGTTCTTCGACGATAGTGTCCC-AGCGAA
571 CCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGA-TGAA
* * * * * * *
16469397 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAACTTGTGCTACCGTAACCCTCAGCCTGGTCCA
634 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCG
* *
16469462 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCGAC
699 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
16469527 CCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGT
764 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGT
* ** * * * *
16469592 CGGGTCCCCCTCTGTGTGCTGTCGATTCTGCTGCCACAACCCTCGATCTGGTCTGAT
829 CGGGTCCCCCTCTGCGTGCTACCGATCCTGCTG-TACAACCCTTGGTCTGGTCTGAT
* *
16469649 CTTAGACTGGGAATGAACTTCGTCTACCTAAGCCAACCGATGAAACGAGCGGGTGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAGCGGG-CGG--GGCGGG
*
16469714 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTG
63 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * * *
16469779 GCTCATCTTCAAATTTTTACCGTGCCACTACCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
128 GCACATCTTCAAA-TTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
16469844 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
192 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
** ** *
16469909 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAACCCCAAACTTGGTAGAT
257 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
16469974 GTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAGAAACTCAAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
16470039 TTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTA
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * * *
16470104 TAAAATCTCAAATGCTCTTTAAAGGGGCGTGGGTTCTTGAGGTTTGATGAGGGTTAAGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
16470169 TATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGTCCCCCCCGATC
517 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * **
16470234 GCTTGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATATGGC
581 GCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGC
* * **
16470299 ACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCTAATCTTAGACTGG
646 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * *
16470364 GAATTAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCAATGAAACGAG
711 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * ** *
16470429 CGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGTCGGGTTTCCCTA
776 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTC
* * **
16470494 TGCATGCTACCGATCCTGCTGTAGCAACCTTTGGT-TCGGTCCAAT
841 TGCGTGCTACCGATCCTGCTGTA-CAACCCTTGGTCT-GGTCTGAT
* * * * * * *
16470539 CTTGGACTAGGAATGAAC-TC-TGTACGCTTAAGCCAACAGATGAAACGGGCGGG-TGGGCGAGC
1 CTTAGACTGGGAATGAACTTCGTATAC-C-TAAGCCAACCGATGAAACGAGCGGGCGGGGCGGGC
* * * **
16470601 ACTACACCGGCCAGAGAGGTGGGATGCGCAAGCCGCGGATTAATAGGGTGGTAGGTGGGTTTAGG
64 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16470666 CACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCC
129 CACATCTTCA-AATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16470731 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAAC
193 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
16470796 TTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACG
258 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16470861 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGTTAAAAACTCGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
16470926 TTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATTGCTACTGGCAGCAAACTTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
16470991 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* **
16471056 ATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCTTCCGATCCCCCC-ATC
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--CCGGCCCCCCCGATC
* * * * * * *
16471120 ACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCTCGATGAAGAAAAATGTGGC
581 GCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGC
* * *
16471185 ACCAGCACATGCCCGAGCCCAGTATGTGCTTCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
646 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * *
16471250 GAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
711 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
** * * *
16471315 CGTGCGGGCGCTCAGCCGGCCAGA-CAGCGAGG-TGCTCAAGCCGAGGATCGGTCGGGTCCCCCT
776 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCT
* * * *
16471378 CTACGTGCTACCGATCCTACTGT-CGTAACCCTAGGTCTGGTCTAAT
840 CTGCGTGCTACCGATCCTGCTGTAC--AACCCTTGGTCTGGTCTGAT
* * * * *
16471424 CTTAGACTGAGAATGAACTTCTTATATCTAAGCCAACCGATGAAACGAGCCGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAG-CGG-GCG-GGGCGGG
* * * * ***
16471489 CACTACGCCGGTCAGAG-GGACGGGATGCGCAAGCCATGGATCAATAGGGTCGTAGGTGCACTTA
63 CACTACGCCGGCCAGAGAGG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
16471553 GGCACATCTTCATAATTCTGCCGTGCCAATTCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
127 GGCACATCTTCA-AATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
16471618 CCTTAAGCCTTCGA-GTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTTGA
191 CCTTAAGCCTTC-ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
** **
16471682 AAAATTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAACAAGTTTTGGCCCCAAA-TTGGTAG
255 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * **
16471746 ACATGATCCTTGTATTTTTATTGGCATACACAAAAAAATTTTGCTAAAAACTCGAAGTGTACAAG
320 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
16471811 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACTGGCAGCAAACC
385 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
16471876 TGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
16471941 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGATCCCCCCCGA
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCCGA
* * * * * ** *
16472006 TCGCCGGAACCCAAATGTCGTCGATCAAGTTCTCCGGTGATGGTGTCCCGATGAAGGAAAATGCG
579 TCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCG
* * * * * ** *
16472071 GCACCAGCAAATGCCCGAGACCAACATGTGCTGCCGTAACCTTCGATCCAGTCTGATCTTAGACT
644 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACT
* * * *
16472136 GGGAATGAACTCCGTATGCTTAGACAGGGAATGATCTCCGTATGTCTAAGTCAACCCATGAAATG
709 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * * * *
16472201 AGCGTGCAGGCGCTCAGTCGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGATCGGGTCCCCA
774 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCC
* * * *
16472266 TCTACGTGCTACCGATCCTACTGTAGCAACCCTTGGTTTGGTCCGAT
839 TCTGCGTGCTACCGATCCTGCTGTA-CAACCCTTGGTCTGGTCTGAT
* * * * * **
16472313 CTTAGACTGGGAATGAACTCCGTATACCTAAGCGAACTGACGAACCGAGCGGGCGAGTGGGCGAA
1 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAGCGGGC--G-GGGCGGG
* *
16472378 CACTACGCCGACCAGAGAGGCGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
63 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
16472443 GCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCC
128 GCACATCTTCA-AATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * * *
16472508 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAC-AATTTTCAAA
192 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
16472572 GCTTGTTACAGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTAGGCCCCAAACTTGGTAGA
257 -CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
16472637 CGTGATCCTTGTATTTTTTTTGGAATGCACAAAACAATTCAACTAAAAACTCAAAGTGTACAACA
321 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
16472702 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
16472767 GTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
16472832 ATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGGACACCCCCCGGCCACCACCGAT
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCCGAT
* * * * * *
16472897 CACCGAAACCCCTATGCCGTCGGTTAGGTTCT----C-------T---GACGAAGAAAAATGCGG
580 CGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGG
* * * * * * * * *
16472948 TACCAACACATGCTCGACCCCAGCATGTGCTACCGTAACGCTCGATCTGATCCAATCTTAGACTG
645 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTG
16473013 GGAATGAACTCCGTAT
710 GGAATGAACTCCGTAT
16473029 ACCTAAGTGA
Statistics
Matches: 3699, Mismatches: 462, Indels: 185
0.85 0.11 0.04
Matches are distributed among these distances:
870 1 0.00
871 170 0.05
872 144 0.04
873 3 0.00
875 8 0.00
876 179 0.05
877 42 0.01
878 124 0.03
879 197 0.05
880 145 0.04
881 90 0.02
882 25 0.01
883 57 0.02
884 31 0.01
885 183 0.05
886 677 0.18
887 21 0.01
888 453 0.12
889 560 0.15
890 586 0.16
891 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGATGAAACGAGCGGGCGGGGCGGGCAC
TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCAAATTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGG
AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGT
GCTACCGATCCTGCTGTACAACCCTTGGTCTGGTCTGAT
Found at i:16470390 original size:26 final size:26
Alignment explanation
Indices: 16470354--16470403 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16470344 CTGATCTAAT
*
16470354 CTTAGACTGGGAATTAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
16470380 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16470404 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:16471269 original size:26 final size:26
Alignment explanation
Indices: 16471240--16471292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471230 CTGGTCCGAT
16471240 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
16471266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16471292 C
1 C
16471293 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16472165 original size:26 final size:26
Alignment explanation
Indices: 16472128--16472179 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16472118 CCAGTCTGAT
*
16472128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
16472154 CTTAGACAGGGAATGATCTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16472180 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16473730 original size:26 final size:26
Alignment explanation
Indices: 16473694--16473746 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473684 CTGATCCGAT
*
16473694 CTTAGACTGGGATTGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
16473720 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16473746 C
1 C
16473747 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16474452 original size:26 final size:26
Alignment explanation
Indices: 16474423--16474475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16474413 CCGGTCCGAT
*
16474423 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16474449 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16474475 C
1 C
16474476 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16475340 original size:26 final size:26
Alignment explanation
Indices: 16475311--16475363 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16475301 CCGGTCCGAT
16475311 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16475337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16475363 C
1 C
16475364 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16475441 original size:888 final size:889
Alignment explanation
Indices: 16473720--16480194 Score: 8148
Period size: 888 Copynumber: 7.4 Consensus size: 889
16473710 ACTTCGTATG
* * * * * *
16473720 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
16473785 CACTGCGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
16473850 GCAAATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
16473915 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * * ** * *
16473980 CTTTTTACAGTTCGGGATTTTTGAAAATTTTTTTAGAAGGACTTTTGGTACCAAACATCGTAGAC
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
16474045 GTGATCCTTGTATTTTT-TTGGTATGCACAAAAAGATTCAGCTAAAAGCTCGAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
16474109 TTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
16474174 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * **
16474239 TATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGGGCACACCCCCCCGGTCCCCCC-ATC
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATC
* * *
16474303 G-CTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATGCGA
585 GTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGG
* * * **
16474367 CACCACCACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTG
649 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTG
*
16474432 GGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
714 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
16474497 GCGTGCGGGTGCTCAGTCGGCTAGAGGGGCTGGATGCGTAAGTCGGGGATCGGTTGGGTCCCCTT
779 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCTT
* * * **
16474562 CTGCGTGCTGTCGATCTTGCTACCGCAACCCTCAGTTTGGCCTGAT
844 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCAGGCCTGAT
* ** * * *
16474608 CTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAATTGACAAAACGAGCAGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
16474673 CACTACGCCGACCATAAAGGCGGGATGCGCAAGTCGTAGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
16474738 GCACATCTTCATATTTCTGCCATGCCAATGCCAATTTTCTTCCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* **
16474803 CTTAA-CCGTTCATGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CTTAAGCC-TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
* * *
16474867 CCTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCTCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
16474932 TGTGATCCTTGTATTTTT-TTAGGCAAGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAG
325 CGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
16474996 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * *
16475061 TGTAAAATCTAAAATGCTCTTTAA-GAGG-GTGAGTTCCCAAGGTTTGATGAGGGATAGGAGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
16475124 AATATAAGGGCCAAGGACCAGCACCCATCACACATCATCTGCGCACACCCCCTCGACCCCCCCAA
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGACCCCCCCGA
* * * * * * *
16475189 TCGTCGAAACCCAAATGCCGCTGGTCAGGTTCTCCGGCAACGGTGTTCTGGCGAAGAAAAATGCG
583 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCG
* * * * *
16475254 GCACCAGTACATGCTCGAGCCCAACATGTTCTTCCGCAACCCTCAGTCCGGTCCGATCTTAGACT
648 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACT
* * *
16475319 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACAATGAAACG
713 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
16475384 AGCGTCCGGGCGCTCAGCCGACTAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCC
778 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCT
* * *** * * *
16475449 TCTGCGCGCTACCGATCCTGCTATGGCAACCCT-TGATCGGGTCC-AAT
843 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCAGG-CCTGAT
* * * *
16475496 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAACGACGAAACGAGCGGGCAGGAGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
16475561 CACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
16475626 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
16475691 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * * *
16475756 CTTTATACGGTTTGGGATTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTT-GTAGAT
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
16475820 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAATCAAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
16475885 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
16475950 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
16476015 CATAAGGGCCAAGTAGCAGCACCAATCGCACATCATG-G-G------CGCCGACCCCCCCGATCA
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
* * * * * * * *
16476072 TCGAAACCCTAATGCCACCGGTCAGGTTCTCCGACGATGATGTCCTGGCGAGGAAAAATACGGCA
586 TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCA
** * * * *
16476137 CCAGCACATGCCCGAGGACAGCATGTGCTGCCGTAATCCTC-GATCCGATCCGATCTTAGACTGA
651 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGG
* * * * *
16476201 GAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATAAGCCTTAGTCAACCCATGAAACGAG
715 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
16476266 CGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGGT-CCCTCT
780 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCT-T
* * * * * ** *
16476330 CTGTGTGCTACCGATCCTGTTGTCACAACCCTCAGTTGGGTCTGAT
844 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCAGGCCTGAT
** * * * *
16476376 CTTAGACTATGAATGAGCTTCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
16476441 CACTACGCC-AGCCAGAGACGCGGGATGCG--AGCCGTGGATCGATCGGGTGGTAGGTGGGTTTA
66 CACTACGCCGA-CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
16476503 GGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* * * **
16476568 CCTTAAGCCTTGCGTGAGAAGTTTCAT-GCAAGTCGACTCG-TTTCTATTTTTCATGATTTTTGA
195 CCTTAAGCCTT-CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
** * *
16476631 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACCTAGGCA
259 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA-CTTGGTA
* * * *
16476696 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCAAAATGTACAA
323 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
16476761 GATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
16476826 TTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
16476891 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCG---------C-A------C-A
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGA
* ** * *
16476939 -C-TC----CCCC--GGCCGCCGGTCAGGTTCTCCGATGATGGTGTCCCGACGAAAAAAAATACG
583 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCG
* * * * * *
16476996 GCACCAACACATGCTCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGGTCCCATCTTAGATT
648 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACT
* *
16477061 GGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
713 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * * * * *
16477126 AGTGTGCGGGCAATCAGCCGGCCAGAGGGGCGGGATACGTAAGCTTG-GGATCGGTCAGGTCCCT
778 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGAGGATCGGTCGGGTCCCC
* * * *
16477190 TTCTACGTGCTGCCGATCCTGGTGCCGCAACCCTCTA-TCCGGTCTGAT
842 TTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-AGTCAGGCCTGAT
* * * * *
16477238 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATGAATCGA----GCGGGCGGTCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
16477299 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
16477364 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
16477429 CTTAAGCCTTCATGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * * **
16477494 CTTTTTACGGTTTGGGATTTTTAAAAATTTTTTCAGTAGGAGTTTTGTCCCCAAACTTCTTAGAC
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
16477559 GTGATGCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
16477624 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTAGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
16477689 TAAAATCTCAAATGCACTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
16477754 TATAAGGGCCAAGTACTATCACCCATCGCACATCATGTGCGTACACCCCCCACCGGCCCCCCCGA
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCC-CCGACCCCCCCGA
* * * * * * *
16477819 TCGCCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGCAATGGTGTCTCGACGAAGAAAAATGCA
583 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCG
* ** ** *
16477884 GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCATAACCCT-AGGTTTGGTCCGATCTTACAC
648 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA-GTCCGGTCCGATCTTAGAC
* * *
16477948 TGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAAC
712 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
**
16478013 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGT-CCC
777 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC
* * * * * *
16478077 TCTCTGTGTGCTACCAATCCTGCTGCCGCAACCCTCGGTCTGG-TTCGAT
842 T-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCAGGCCT-GAT
** * * * *
16478126 CTTAGACTGGGAATGAACTTTGTATGCCTAAACCAACCGACGAAACGAGGGGGCAGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
16478191 CACTACGTCGACCAGAGAGGCGGGATGCACCAGCCATGGATCGATAGGATGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
16478256 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAGTGGTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * **
16478321 CTTAAGCCTTCATGTGAAGTTTAATGGCAAGACCACTCGTTTTCTATTTTTCACT-ATTTTTGAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTCAAA
* * * * *
16478385 ACTTTTAACGGTTTGGGATTTTTGAAAATTTTTTTAGAAGGAGTTTTGGCCCCAATCTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
16478450 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAATTGGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
16478515 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAAACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
16478580 GTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
16478645 ATATAAGGCCCAAGTACCAGCACCCATTGCTCATCATGTGCGCACACCCCCC-AGCCCCCCCGAT
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCCGAT
** * * * * *
16478709 CACCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGGTGTCCCGGCTAAGAAAAATGCGG
584 CGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGG
** * *
16478774 CACCAGCACATGCCCGAGCGTAGCATGTGCTACTGCAA--C-CA-T-C--T--G----T-G-C--
649 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTG
* * *
16478822 -G---G---TCCG-AT-CTTACACTGGGAATGAACTCCGTATGCC-AAGTGAACCAACGAAACGA
714 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
16478877 ACGTGCGAGCACTTAGCCGTCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGG-CAGGGTTCCCC
779 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGG-TCCCC
* * ** ** *
16478941 -ACTGCGTGCTGCCGATCCTGTTGCCGCAA-CCTTGGTCCAATCC-AAT
842 TTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGT-CAGGCCTGAT
* * * *
16478987 CTTAGACTGGGAATGAACTCTGTATGCCTAATCCAACCGACGAAACGAGCAGGCGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
16479052 CACTACGTCGACCAGAGAGGCAAGATGCGCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
16479117 CCACATCTTCATATTTATACCATGCCAATGCCATTTTTTTGGATTGTAAATTCATACAATGGCCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
16479182 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * *
16479247 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGCGTTTTGGTCCCAAACTTGGTAGAC
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
16479312 ATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAA---A--T------T--AAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
16479363 TTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC-TTAA-GTGCGTACTGGCAGCAAACC
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG-GC-TACTGGCAGCAAACC
* *
16479426 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
16479491 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCACCTCGA
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC-CCCCGA
* * * * *
16479556 TCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGACGAAGAAAAATGCA
583 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCG
* * ***
16479621 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCAGTCTACTCCGATCTTAGACT
648 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACT
* * *
16479686 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACG
713 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
16479751 AGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGCCGAGGATCAGTCGGGTCCCCC
778 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCT
* * * * * * *
16479816 TCTGCATGTTGCTGATCCTGCTGCTGCAACCCAT-GGTCCAGTCC-AAT
843 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCC-TCAGT-CAGGCCTGAT
*
16479863 CTTAGACTGGGAATAAACTCCGTATGCCTAAG-----C--CG--ACGA----------------G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
** * * *
16479903 CACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
16479968 GCACATCTTCATATTTCTACCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGTTCC
131 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* *
16480033 TTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTATT-GAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT-TTCAAA
16480097 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
16480162 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16480195 TGCGGCACCA
Statistics
Matches: 4872, Mismatches: 602, Indels: 263
0.85 0.10 0.05
Matches are distributed among these distances:
845 1 0.00
846 6 0.00
847 179 0.04
848 93 0.02
849 1 0.00
850 11 0.00
851 259 0.05
852 3 0.00
855 2 0.00
857 2 0.00
858 38 0.01
859 14 0.00
860 345 0.07
861 399 0.08
862 368 0.08
863 35 0.01
864 8 0.00
865 3 0.00
866 1 0.00
867 4 0.00
868 3 0.00
869 4 0.00
870 1 0.00
871 3 0.00
872 4 0.00
873 2 0.00
874 32 0.01
875 83 0.02
876 45 0.01
877 75 0.02
878 120 0.02
879 239 0.05
880 341 0.07
881 5 0.00
882 2 0.00
885 1 0.00
886 9 0.00
887 238 0.05
888 1132 0.23
889 290 0.06
890 7 0.00
892 463 0.10
893 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCTTCT
GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCAGGCCTGAT
Found at i:16477979 original size:26 final size:26
Alignment explanation
Indices: 16477941--16477993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16477931 TTGGTCCGAT
*
16477941 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
16477967 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
16477993 C
1 C
16477994 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:16479707 original size:26 final size:26
Alignment explanation
Indices: 16479678--16479730 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16479668 CTACTCCGAT
16479678 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16479704 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16479730 C
1 C
16479731 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16480287 original size:26 final size:26
Alignment explanation
Indices: 16480258--16480308 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16480248 GGTCTGATCC
16480258 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
16480284 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
16480309 CTAAGGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:16481157 original size:26 final size:26
Alignment explanation
Indices: 16481128--16481180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16481118 CCAGTCCGAT
16481128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16481154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16481180 C
1 C
16481181 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16483809 original size:26 final size:26
Alignment explanation
Indices: 16483773--16483825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16483763 TCGGTCTGAT
*
16483773 CTTAGTCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16483799 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16483825 C
1 C
16483826 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16484264 original size:881 final size:879
Alignment explanation
Indices: 16480191--16484738 Score: 6042
Period size: 872 Copynumber: 5.2 Consensus size: 879
16480181 TGGCATGCAC
* * * *
16480191 AAAATGCGGCACCAGCACATGCCCT-AGCCTAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGA
1 AAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * *
16480255 TCCTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGGCAACC
65 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
16480320 CACGAAACGA----------GCTCAGCCGGCCATAAGGGCGGGATGCGCAAGCTGGGGATCAACC
130 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCAATC
* * * * * ** * * *
16480375 GGGTCTCCCTCTACGTGTTGCCGATCTTGCTGCAGCAACCCTCGGTTTGGCCCAATCTTAAACTG
195 GGGTCCCCCTCTACGTGCTG-TGATCCTGCTGCA-CAACCCTTGGTCCGGTCCGATCTTAGACTG
* ** *
16480440 GGAGTG-ACTCCGTATGCCTAAAACAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCC
258 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GG-CGGGCGGGCACTACGTCGGCC
* * *
16480504 AGAGAGGCGGGATGCGAAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATA
320 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
16480569 TTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
385 TTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
16480634 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTC
450 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTC
* * * ** * *
16480699 AGGATTTTTTAAAATTTTTTCACAAGGAGTTTTTGTGCCAAGCTTGGTAGACGTGATCCTTTTAT
515 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
16480764 TTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTT
580 TTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
16480829 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
644 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
16480894 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAATATAAGGGCCAA
709 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAA
16480958 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G-CCCCCCGATCGTCGGAACCCCAA
773 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAA
* * * *
16481021 TGTCGCCGGTCAGGTTCTCTGGCGATGATGTCCCGAGGAAGA
838 TGTCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
* * * ** *
16481063 AAAATGCGACACCTGCACATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGAT
1 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
*
16481128 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
66 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * ** * * * * * *
16481193 ACAAAACGAGCGTGCGGGCGTTTAGTTGGCCA-AGGGGGTGGGATGCACAAGCCGGTGACCAGTC
131 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-AGGGCGGGATGCGCAAGCCGGGGATCAATC
* * * **
16481257 GGGTCCCCTTCTATGTGCTACG-GATCTTGCTGTTGCAACCCTTGGTCCGGTCCGATCTTAGACT
195 GGGTCCCCCTCTACGTGCT--GTGATCCTGCTG-CACAACCCTTGGTCCGGTCCGATCTTAGACT
* * * *
16481321 GAGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC-AAGCGGGCGGGCACTACGTCGCCCAG
257 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACGTCGGCCAG
* * * *
16481385 AGAGGCGAGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTTATATT
322 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
16481450 TCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCATGT
387 TCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * *
16481515 GAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGG
452 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGG
** * ** *
16481580 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTTTCCCCAAGCTTCTTAGACGTGATGCTTGTATTT
517 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
16481645 TTTTTGGCATGCCCAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
582 TTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* *
16481709 AAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
646 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
16481774 TCTTTAAGGGGGTATGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
711 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTA
* *
16481839 CTAGCACCCATCGCACATCATGTGCGCACACCCCCTACCAGCACCCCCCGATCG-CTAGAACCCC
776 CCAGCACCCATCGCACATCATGTGCGCACA-CCCC--CCAGC-CCCCCCGATCGTC-GGAACCCC
* * *
16481903 AACGTCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGA
836 AATGTCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
* ** *
16481947 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCATAACCCTCGGTTTGGTTCGAT
1 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
16482012 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTGTGCCTAAGTCAACCC
66 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * **
16482077 ACGAAACGAGCGTACGGGCGGTCAACCGACCAGACGGGCAGGATGAGCAAGTCGGGGATCGGTCG
131 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCAATCG
* * * *
16482142 GGTCCCTCTCTATGTGCTAGTGATCCTGCTGCCGCAACCCTTGGTCCGGTTCGATCTTAGACTGG
196 GGTCCCCCTCTACGTGCT-GTGATCCTGCTG-CACAACCCTTGGTCCGGTCCGATCTTAGACTGG
**
16482207 GAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAGGGGACGGGCGGGCGGGCACTACGTCG
259 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-----GA--GGCGGGCGGGCACTACGTCG
* *
16482272 GCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTC
317 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* ** * *
16482337 ATATTTATGCCGCGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAGTGGTCTCTTAAGCCTT
382 ATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * * * *
16482402 AATGTGAAGTTTCTTGGCAAGACCACTCATTTTTTATTTTTCACGATTTTTG-AAACTTTTTACA
447 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAAACTTTTTACG
* * * *
16482466 GTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCT
511 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
16482531 GTATTTTTGTTGGCATGCACAAAATAATTTAGCTAAAAACTCAAAGTGTACAAGTTTTTGCGACC
576 GTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
* * * *
16482596 ATTTGAAAAATGTATCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAATCTC
640 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
16482661 AAATGGTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGC
705 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
* *
16482726 CAAGTACCAGCACCCATCGCACATCATGTACGCCCACCCCACCAG-CCCCCCGATCGTCGGAACC
770 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCAGCCCCCCCGATCGTCGGAACC
* * * * *
16482790 CCAATGTCGTCGGTCAGGTTCT-CTACGATGGTGTTCGGATGAAGA
834 CCAATGTCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
* * * * * * *
16482835 AAAAAGTGGCACCAGCACATGCCCT-AGCCCAGTATGTGCTACCACAACCCTTGGCCCTGTCCGA
1 AAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* * *
16482899 TCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTGCCAAAGTCAACC
65 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
16482964 CACGAAACGAGCGTGCGGGCGATCAGCCGGCCATAGGGGCGGGATGCGCAAGCCGAGAATCGATC
130 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCAATC
* *
16483029 GGGTCCCTCTCTACGTGC--TG--CC-G-T----AACCCTTGGTCCGGTCTGATCTTAGACTGGG
195 GGGTCCCCCTCTACGTGCTGTGATCCTGCTGCACAACCCTTGGTCCGGTCCGATCTTAGACTGGG
* * * *
16483084 AATAAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGACGGGCACTACGCCGGCCAG
260 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGCACTACGTCGGCCAG
* * *
16483149 AGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATT
322 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
16483214 TCTACCATGCCAATACCATTTTTTTTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
387 TCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * *
16483279 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTAAAAACTTTTTACGGTTCGA
452 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGG
* * *
16483344 GATATTTTAAAATTTTTTCACG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATC
517 GATTTTTTAAAATTTTTTCA-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
** * *
16483408 TTTGTTGGTGTGCAAAAAAGAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTG
581 TTTGTTGGCATGCAAAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* *
16483473 AAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATG
645 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
16483538 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
710 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
* * *
16483603 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCTCCCGATTGCCGGAACCGCAAT
775 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCC-CCCGATCGTCGGAACCCCAAT
*
16483667 GTTGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
839 GTCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
* * * *
16483708 AAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTACTGCCACAACCCTCGGTTCGGTCTGAT
1 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
16483773 CTTAGTCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
66 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
16483838 ACGAAACGAACGGGCGGGCGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGTCGGGGATCAATCG
131 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCAATCG
* * * * **
16483903 GGTCCCCCTCTACGTGCTGTGGAACCGGCTGCCACAACCCTCGATCCGGTTTGATCTTAGACTGG
196 GGTCCCCCTCTACGTGCTGT-GATCCTGCTG-CACAACCCTTGGTCCGGTCCGATCTTAGACTGG
* * * *
16483968 GAATGAGCTCCATATGCCTAAGCCAACCGACGAAACGA-GTGGGCGGGCACTACGTCGGCCAAAG
259 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAG
* *
16484032 AGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
324 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * * *
16484097 TGCAATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCAAGTGA
389 TGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA
* *
16484162 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTGCGGTTCGGGA
454 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGA
* *
16484227 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTT
519 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * * * *
16484292 GTTGTCAAGCAGAAAACAATTGAGCTAAAAATTCTAAGTGTACAAGATTTTGTGACCATTTGAAA
584 GTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
16484357 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
648 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* **
16484422 TTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGCGGGGCCAATATAAGGGCCAAGTACC
713 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
* * * * * * * *
16484487 AGCACCCAGCGCACATCATGTGCTCACACCCCCCGGCCCAACCTGAACGTCGAAACCCCAATGCC
778 AGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCC-CCCCGATCGTCGGAACCCCAATGTC
* * *
16484552 GCCGGTTAGGTTCTCC-AGTGATGGTGTCCTGACGAAGA
842 GCCGGTCAGGTTCTCCGA-CGATGGTGTCCCGACGAAGA
* * * *
16484590 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTGCGATCCGAT
1 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * * *
16484655 CTTAGACTGGGAATGAACTCTGTATGCTTACATTGGGAATGAAGTCCGTATGCCTAAGCCAACCG
66 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
*
16484720 ACGAAATGAGCCG-GCGGGC
131 ACGAAACGAG-CGTGCGGGC
16484739 AGGCGAGCAC
Statistics
Matches: 3224, Mismatches: 386, Indels: 122
0.86 0.10 0.03
Matches are distributed among these distances:
870 1 0.00
871 17 0.01
872 617 0.19
873 200 0.06
875 1 0.00
876 61 0.02
878 186 0.06
879 288 0.09
880 4 0.00
881 471 0.15
882 272 0.08
883 33 0.01
884 309 0.10
885 64 0.02
888 199 0.06
889 40 0.01
890 2 0.00
891 6 0.00
892 271 0.08
893 182 0.06
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCAATCG
GGTCCCCCTCTACGTGCTGTGATCCTGCTGCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAGAG
GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGTCGCCG
GTCAGGTTCTCCGACGATGGTGTCCCGACGAAGA
Found at i:16485421 original size:26 final size:26
Alignment explanation
Indices: 16485385--16485437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485375 TTGGTCTGAT
* *
16485385 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
16485411 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
16485437 C
1 C
16485438 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16486300 original size:26 final size:26
Alignment explanation
Indices: 16486264--16486316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16486254 CCGATCCGAT
16486264 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16486290 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16486316 C
1 C
16486317 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16488627 original size:159 final size:159
Alignment explanation
Indices: 16488354--16488701 Score: 439
Period size: 159 Copynumber: 2.2 Consensus size: 159
16488344 TGGTCTGATT
* * *
16488354 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCA
1 TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCA
* ** * * *
16488419 GCCCAGAGGAGCGGGATGCGCAAGCCGAGGATCGGTCGGGTTCCTCTCTGCGTGCTGCAGATCCT
66 GCCCAGAGGAGCGAGATGCGCAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTGCTACAGATCCT
* * * *
16488484 GCTACTGCAACCCTCAGTTCGGTTCGATC
131 ACTACCGCAACCCTCAGCTCAGTTCGATC
16488513 TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTGCG-GTCGCTCAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTGCGAG-CGCTCAGC
* * * * *
16488577 TGGCCAGAGG-GTCGAGATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTGCGTGCTACCGATC
65 AGCCCAGAGGAG-CGAGATGCGCAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTGCTACAGATC
* * * * *
16488641 CTATTGCCGTAACCCTCGGCTCAGTTGGATC
129 CTACTACCGCAACCCTCAGCTCAGTTCGATC
* *
16488672 TTAGACTAGGAATGAACTTCGTATGCCTAA
1 TTAGACTGGGAATGAACTCCGTATGCCTAA
16488702 GCCAACCGAC
Statistics
Matches: 162, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
158 2 0.01
159 160 0.99
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCA
GCCCAGAGGAGCGAGATGCGCAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTGCTACAGATCCT
ACTACCGCAACCCTCAGCTCAGTTCGATC
Found at i:16490257 original size:26 final size:26
Alignment explanation
Indices: 16490221--16490271 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490211 CTGATCCAAT
*
16490221 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16490247 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16490272 ACCTAAGCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16492356 original size:864 final size:860
Alignment explanation
Indices: 16490247--16492700 Score: 3679
Period size: 861 Copynumber: 2.8 Consensus size: 860
16490237 ACTTCGTATG
* * * * *
16490247 CTTAGACTGGGAATGAACTCCGTATACCTAAGCGAACTGATGAAACGAGCAGGCGGGCGG-ACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA--AGGCGAGCGGCA-TG
* *
16490311 ACACTACGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
63 -CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
16490376 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTC
127 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
*
16490441 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAC
192 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * ** *
16490506 AC-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGAACCAAACGTGGTAGA
257 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGA
* *
16490570 CATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGA
322 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
16490635 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTCGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
16490700 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
16490765 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAAACCCCATCCGGTCCCCCCC-
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCT-CGG-CCCCCCCG
* * * * *
16490829 ATCTTCGGAACCCCAATGCCGCCGGTCAGGCTC-TCCAGCGATGGTGTCCCGGGGAAGAGAAATA
580 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGA-CGATGGTGTCCCGGCGAAGAAAAATA
* * *
16490893 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTCGTCTGGTCTGATCTTAGA
644 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCC-TCGTCTGATCCGATCTTAGA
* *
16490958 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTTAGCCGGCCA
708 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACACTCAGCCGGCCA
* * * *
16491023 GAGGGGCGGGTTGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCTGATCCTGCTAC
773 GAGGGGCGGGATGCACAAGCCGGGGATCGACCCGACCCCCCTCTGCATGCTACCGATCCTGCTAC
*
16491088 CGTAACACTCAGTCCGGTCAGAT
838 CGCAACACTCAGTCCGGTCAGAT
*
16491111 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGAGCGGC-TGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAAGGCGAGCGGCAT--GC
* * *
16491173 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTATG
64 ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16491238 CACATCTTCATATTTCGGCCATGCCAATGCCAATTTTCTAGCTTGTAAATTCATACAATGGTCCC
129 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
* *
16491303 TGAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
194 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
*
16491368 TTTTTACGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAA-TTTTGGCCCCAAACTTGGTAGAC
259 TTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAA-GAAGTTTTGGCCCCAAACTTGGTAGAC
* * *
16491432 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTACAAACTCGAAGTGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
16491497 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAATCCTG
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
16491562 TAAAATCTCAAATGCTCTTTTAAGTGGGTGTGTGTTTTCGAGGTTTGATGAGGGATAGGGGGTCA
453 TAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** * *
16491627 ATATAAAAGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCTCGGCCCCCCCGAT
* * * **
16491692 CGTCGGAACCCAAATGCCGTCGGTCAGGTTCTTCGACGATGGTGTCCTGGCGAAGAAAAATACAA
582 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGTCCCGGCGAAGAAAAATACGG
*
16491757 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTG
647 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCG-TCTGATCCGATCTTAGACTG
* * * *
16491822 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGACGCTCAGCCGGCCAGAG
711 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACACTCAGCCGGCCAGAG
* ** * * ** *
16491887 GGGTGGGATGCGTAAGCCGGGGATCGACCGGGCCCCCCTCTGTGTGCTACCGATCCTGCTGCCGC
776 GGGCGGGATGCACAAGCCGGGGATCGACCCGACCCCCCTCTGCATGCTACCGATCCTGCTACCGC
* *
16491952 AACCCTCAG-CCGGTCTGAT
841 AACACTCAGTCCGGTCAGAT
16491971 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAATGGGCGAGCGAGCATG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAA--GGCGAGCG-GCATG
* *
16492036 CAATACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAG
63 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
16492101 GCACATCTTTATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
128 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * * * * * *
16492166 CTTAAGCCTTCATGTGGAGTTTCATGGCAGGACGACTTGTTTTCTATTTTTGAGGAATTTCGAAA
193 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
16492231 CTTTTTACGATTCAAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAACTTGGAAGAC
258 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGAC
* * *
16492296 GTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
16492361 TTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
16492426 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAG-TCTCAAGGTTTGATGAGGGATAGGGTGCCAA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
16492490 TATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCAAACCCCCT-GGCCCCCCCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCTCGGCCCCCCCGATC
* * * * * *
16492554 GTCGGAACCCCAATGCCGCCGGTCACGTTCTCCGGCGATGGTGTCCCGGTGAAGCAAAATGCGGC
583 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGTCCCGGCGAAGAAAAATACGGC
* * *
16492619 ACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGTAACCCTCGGCCTGCTCCGATCTTAGACTGG
648 ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTC-GTCTGATCCGATCTTAGACTGG
*
16492684 GAATGAACTCCTTATGC
712 GAATGAACTCCGTATGC
16492701 TTAGATTGGG
Statistics
Matches: 1433, Mismatches: 140, Indels: 37
0.89 0.09 0.02
Matches are distributed among these distances:
860 256 0.18
861 568 0.40
862 167 0.12
863 16 0.01
864 423 0.30
865 2 0.00
866 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAAGGCGAGCGGCATGCAC
TACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCTCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGTCCCGGCGAAGAAAAATACGGCACC
AGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGTCTGATCCGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACACTCAGCCGGCCAGAGGGGCG
GGATGCACAAGCCGGGGATCGACCCGACCCCCCTCTGCATGCTACCGATCCTGCTACCGCAACAC
TCAGTCCGGTCAGAT
Found at i:16492703 original size:26 final size:26
Alignment explanation
Indices: 16492674--16492726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16492664 CTGCTCCGAT
16492674 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCTTATG
*
16492700 CTTAGATTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCTTATG
16492726 C
1 C
16492727 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCTTATG
Found at i:16494255 original size:26 final size:26
Alignment explanation
Indices: 16494226--16494278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494216 CCAGTCTGAT
16494226 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16494252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16494278 C
1 C
16494279 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16495149 original size:26 final size:26
Alignment explanation
Indices: 16495113--16495194 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
16495103 CCGGTCCGAT
16495113 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16495139 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
16495165 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16495191 CTTA
1 CTTA
16495195 AGTCAACCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16496065 original size:26 final size:26
Alignment explanation
Indices: 16496036--16496085 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16496026 ATCCGATCTC
*
16496036 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
16496062 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
16496086 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:16496869 original size:882 final size:879
Alignment explanation
Indices: 16492739--16496872 Score: 5377
Period size: 888 Copynumber: 4.7 Consensus size: 879
16492729 AAGTCAATCT
*
16492739 AGAGAGGCGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
16492804 TTTCTGCCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * *
16492869 GTTAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
*** * *
16492934 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCAACCCAAACTTGGTAGATGTGATCTTTGTAT
196 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
16492999 TTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAAC-CGGAAGTGTACAAGATTTTGTGACCATT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATT
* * *
16493063 TGAAAAAAGTGT-CCCATTTCAGACATTTTCATGGCTACTGG-AGCAAACCTATAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
16493126 TGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAA
390 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAA
* * * * *
16493191 GAACCAGCACCCATCACACATCATGTGTGCACACCCCACTGGCTCCCCCCGATCGTCGGAACCGC
454 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCC-ATCGTCGGAACC-C
* * * * * *
16493256 AATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAGGAAAAATACGGCGCCAGCACATG
516 AATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAGCACCAGCACATG
* * * * *
16493321 CCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGA-T-----T--A----
581 CCCGAGCCCAGCATGTGCTGCCTCAACCCTTGGTACAATCCGATCTTAGACTGGGAATGAACTCC
* * * **
16493374 G---G---A-A--A--TAT--A-TCTGTATGCCTAAGTCAACCCATAAAACGAAG-G-GCAGGAT
646 GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG-AGCGTGCAGGCG
*
16493423 CTCA-CTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTA
710 CTCAGC-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG
** * * *
16493487 CCGATCCTGCTGTCGTAACCCTCGATCCTATTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
774 CCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
16493552 AAGCTAACCGACGAAACGGGCGGGCGGGCGGGCACTATGCCGGCC
839 AAGCCAACCGACGAAA----CGGACGGGCGGGCACTATGCCAGCC
*
16493597 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
**
16493662 TTTCTGCCATGCCAATGCCATTTTTCTCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * ** ** *
16493727 GTGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTATGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* ** * *
16493792 GGGTTTTTTTAAAATTTTTTCAGAAGGAGTTTTATCCCCAAACTTTGTAGTCGTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
16493857 TTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATCTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
16493922 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
16493987 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
391 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* *
16494052 TACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACGGCCACCCCCGATCGTCGAAACCCC
455 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCC-CCCCC-ATCGTCGGAA-CCC
* * ** * *
16494117 AATGCCG-CTAGTCAGGTTCTCCGGCGATGGTGTCCAGGTGAAGAAAAATACGGCACCAGCACAT
516 AATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAGCACCAGCACAT
* * * * *
16494181 GCCGGAGCCCAGCATGTGCT-ACTGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACT
580 GCCCGAGCCCAGCATGTGCTGCCT-CAACCCTTGGTACAATCCGATCTTAGACTGGGAATGAACT
* * * *
16494245 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGC
644 CCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGC
* * * * * * **
16494310 GCTCAGTCGGCCAGAAGGGCAGGACGCTCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
709 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG
* * * * * *
16494375 CCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCT
774 CCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
16494440 AAGCCAACCGATGAAACAGGCAGGCGGGCGGGCACTACGCTAGCC
839 AAGCCAACCGACGAAAC-GG-A--CGGGCGGGCACTATGCCAGCC
** *
16494485 AGAGAGGCGCAATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
16494550 TTTCTGCCATGGCAATGCCATTCTTCTGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
16494615 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTCTCGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
16494680 GGGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
196 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
16494745 TTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
16494810 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
16494875 GCTCTTTAAAAGGGGTGTGAGTTCGCGAGGTTTGATGAAGGATAGGGGGCAATATAAGGGCCAAG
391 GCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAG
* * * *
16494940 TACCAGCACCCATCGCACATCATGTGCGCATAACCCCCCCGACAACCCCCGATTGTCGGAACCCA
455 TACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCCGGC--CCCCCCATCGTCGGAACCCA
* * * * *
16495005 ATGCCGTCGGTCAGGTTCTCCGGCGAAGGTGTCTCGATGAAGAAAAATGC-GACGCCAGCACTTG
517 ATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAG-CACCAGCACATG
* *
16495069 CCCGAGCCCAACATGTGCTGACGT-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
581 CCCGAGCCCAGCATGTGCTG-CCTCAACCCT---T---G---G----T--AC----AAT---C-C
* *
16495133 TGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGT
622 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * * *
16495198 CAACCCATGAAACGGGCGTACAGGCGCTCAGCCGGTCAAAGGGGCGGGATGCGCAAGCTGGGGAT
684 CAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
16495263 CGACCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGATCCGATCCGATCTTA
749 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTA
* * * *
16495328 GATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCAGGCAAGCAGG
814 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGACGGGCGGGCA--C---TATG
16495393 CACTACGTCGACC
874 C-C-A----G-CC
* * * * *
16495406 AAAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCCCATCTTTATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
16495471 TTTTTGCCATGCCAATGCCATTTTTCTGGCCTGTAAATTCATACAATGGTACCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
16495536 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
*
16495601 GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-
*
16495666 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
16495731 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCCGTAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
16495796 TGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
390 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAA
*
16495861 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCACGGCCACCCCCGATCG-CTGGAACCC
454 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCC-ATCGTC-GGAA-CC
* * * * *
16495924 CAATG-C-TACGGGTCAGGTTCTCCGACAATGGTG-CCCGACGATGAAAAATG-TGACACGAGCA
515 CAATGCCGT-C-GGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAG-CACCAGCA
* * *
16495985 CATGCCCAAGCGCAGCATGTGCTGCCTCAACCCTTGGCT-CAATCCGATCTCAGACTGGGAATGA
577 CATGCCCGAGCCCAGCATGTGCTGCCTCAACCCTTGG-TACAATCCGATCTTAGACTGGGAATGA
* **
16496049 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGTG
641 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCA
* * * * * *
16496114 GGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCAGGGATCGACTGGGTCACCTTCTGCGTG
706 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTG
* * ** * * * *
16496179 CTGCCGATCCTACTGCCGCAACCCTCGGCCCGATCCAATCTTAGACTCGGAATTAACTCCTTATG
771 CTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16496244 CCTAAGCCAACCAAGGAAACGGACGGGCGGGCATTATGCCAGCC
836 CCTAAGCCAACCGACGAAACGGACGGGCGGGCACTATGCCAGCC
* *
16496288 TGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
16496353 CTTCTGCCATGCCAATGCAATTTTTCTGGCTTGTAAATTCATTCAATGGTACCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
16496418 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
*
16496483 AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA-GTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
16496547 TTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*** *
16496612 GAAAAAAGTGTCTTAATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
16496677 GCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATAAGGGATAGTGGGCCAATATAAGGGCCAAG
391 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAG
* * *
16496742 TACCAGTACCCATCGCACACCATGTGCGTACACCCCCTCCGGTCCCCCCCATCGTCGGAACACCA
455 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGG-CCCCCCCATCGTCGGAAC-CCA
* ** * * *
16496807 ATGCCGTCGGTCAAGTTCTTAGACGGTGGTGTCCCGACGAAGAAAAATGCAGCACTAGCACATGC
517 ATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAGCACCAGCACATGC
16496872 C
582 C
16496873 TAAGTCAGCC
Statistics
Matches: 2881, Mismatches: 287, Indels: 192
0.86 0.09 0.06
Matches are distributed among these distances:
858 310 0.11
859 28 0.01
860 120 0.04
861 117 0.04
862 3 0.00
867 1 0.00
869 1 0.00
876 1 0.00
879 2 0.00
880 214 0.07
881 48 0.02
882 275 0.10
883 5 0.00
884 3 0.00
885 2 0.00
886 4 0.00
887 107 0.04
888 575 0.20
889 48 0.02
890 2 0.00
893 1 0.00
894 212 0.07
895 2 0.00
896 2 0.00
897 1 0.00
898 1 0.00
900 1 0.00
901 3 0.00
902 1 0.00
905 1 0.00
906 2 0.00
908 1 0.00
909 11 0.00
911 3 0.00
912 4 0.00
913 205 0.07
914 4 0.00
916 1 0.00
917 1 0.00
918 1 0.00
919 8 0.00
920 65 0.02
921 303 0.11
922 181 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCATCGTCGGAACCCAATGC
CGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCTCAACCCTTGGTACAATCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGGACGGGCGGGCACTATGCCAGCC
Found at i:16497737 original size:26 final size:26
Alignment explanation
Indices: 16497708--16497757 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16497698 CGATCTGATT
*
16497708 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16497734 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
16497758 TCCCAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16498797 original size:26 final size:26
Alignment explanation
Indices: 16498768--16498820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16498758 CCGGTCTGAT
16498768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16498794 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16498820 C
1 C
16498821 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16499693 original size:26 final size:26
Alignment explanation
Indices: 16499664--16499714 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16499654 CCGATCTGAT
*
16499664 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16499690 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
16499715 ATCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16499726 original size:896 final size:893
Alignment explanation
Indices: 16497994--16499910 Score: 2732
Period size: 896 Copynumber: 2.1 Consensus size: 893
16497984 CACAAACCGT
* * *
16497994 GGATTGGTCGAGTCCCTCTCTGCGTGTTGCCGATCCTACT-ATCGTAACCCTCAGTCTGGTCCGA
1 GGATTGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTA-TGATCGTAACCCTCAGTCTGGTCTGA
* * * * * *
16498058 TCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAATCGATGAATCGAGTGGG-AGGGTAGGCG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGTGGGCAGCG--GGCG
* * *
16498122 GGCGGGCGGGCACGAAGCCGGCCAGAGAGGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAG
128 GGCGGGCAGGCACGAAGCCGACCAGAGAGGCGGGATGCACAAGCCACGGATCGATAGGGTGGTAG
* * **
16498187 GTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCAT
193 GTGGGTTTAGGCACATCTTCACATTTCTACAATGCCAATGCCATTTTTCTGGCTTGTAAATTCAT
* * * *
16498252 ACAATGGTCGCTTAAGCCTTCTTGTGAAGTTTCATGGCACGACGACTCGTTTTCTATTTTTCATG
258 ACAATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCGATTTTTCATG
*
16498317 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGTGTTTGGCCCCAAAC
323 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGTGTTTGGCCCCAAAC
* * *
16498382 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACCAAAACATTCAGCTAAAAACTCAAAGT
388 TTGGTAGACGGGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGT
*
16498447 GTACAAGATTTTGTGACCATTTAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAA
453 GTACAAGATTTTGTGACCATTTAAAAAAGTGTCCACATTTCAGACACGTTAATGGCTACTGGCAA
* *
16498512 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGTTGAGGGATAG
518 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGCGAGATTTGATGAGGGATAG
* * * *
16498577 GGGGCCAATATAAGGGCCATGTACCAGGACCCATCGCACATCATGTACGCACACCCCCCGGTCCC
583 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCAAACCCCCCCGTCCC
* * * * *
16498642 CCCATCGCTGGAACCCCAATACCATCGATCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAA
648 CCCATCACCGGAACCCCAATACCACCGATCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAA
* * *
16498707 TACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTA
713 TACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCGATCTGATCTTA
* * *
16498772 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
778 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGA
* * * * *
16498837 AACGAGCGTGCGAGCGCTCAGCCGGCCAGAGCAACAGGATGCGAAAGTCGA
843 AACGAGCGTGCGAGCGATCAACCGACCAAAGCAACAGGATGCGAAAGCCGA
* * * * * *
16498888 GGATCGGTCGGGTCTCTCTCTGCGTGCTGCCGATCCTATGATCGTAACTCTCGGTCCGATCTGAT
1 GGATTGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTATGATCGTAACCCTCAGTCTGGTCTGAT
*
16498953 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCAACGAATCGAGTGGGCAGACGGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGTGGGCAG-CGGGCGGG
* * * * ** *
16499018 CGGGCAGGCACTACGTCGACCAGAGAGGTGGGATGCGTAAGCCACGGATCGGTAGGGTGGTAGGT
130 CGGGCAGGCACGAAGCCGACCAGAGAGGCGGGATGCACAAGCCACGGATCGATAGGGTGGTAGGT
* *
16499083 GGGTTTAGGCACATCTTCACATTTCTACAATGCCAATGCCATTTTTTTGGTTTGTAAATTCATAC
195 GGGTTTAGGCACATCTTCACATTTCTACAATGCCAATGCCATTTTTCTGGCTTGTAAATTCATAC
16499148 AATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCGATTTTTCATGAT
260 AATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCGATTTTTCATGAT
* * **
16499213 TTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTGCCAAACT
325 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG-TGTTTGGCCCCAAACT
* * * *
16499278 TGGTAGACGGGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAACCTCGAAGTG
389 TGGTAGACGGGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
16499343 TACAAGATTTTGTGACCATTTGAAAAATA-TTTCCACATTTCAGACACTTTAATGGCTACTGGCA
454 TACAAGATTTTGTGACCATTT-AAAAA-AGTGTCCACATTTCAGACACGTTAATGGCTACTGGCA
** * *
16499407 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCGCGAGGTTTGATGAGGGATA
517 AAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGCGAGATTTGATGAGGGATA
*
16499472 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCG-CC
582 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCAAACCCCCCCGTCC
* * * * *
16499536 CCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTTTCCGACGATGGTGCCCCGATGAGGAGA
647 CCCC-ATCACCGGAACCCCAATACCACCGATCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAA
*
16499601 AATGCGGCACCAGCACATG-TCCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCGATCTGATC
711 AATACGGCACCAGCACATGCT-CGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCGATCTGATC
* *
16499665 TTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATATCTAAGTCAACCCA
775 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCA
* *** * * * *
16499730 CGAAACGAGCGTGCGGGCGATCAACCGACCAAAGGGGCGGGATGTGCAAGCCGG
840 CGAAACGAGCGTGCGAGCGATCAACCGACCAAAGCAACAGGATGCGAAAGCCGA
* * * * * * *
16499784 GGATTGGCCGGGTCCCCCTCTGCGTACTGTCGATCC--TGCTGCCTCAACCCTCAGTCTGGTTTG
1 GGATTGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTATGAT-CGT-AACCCTCAGTCTGGTCTG
* * * *
16499847 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTATCGAATCGAGCGGGCAGGCGGGC
64 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGTGGGCA-GCGGGC
16499911 AGGCACTACG
Statistics
Matches: 900, Mismatches: 112, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
893 1 0.00
894 331 0.37
895 103 0.11
896 463 0.51
897 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GGATTGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTATGATCGTAACCCTCAGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGTGGGCAGCGGGCGGGC
GGGCAGGCACGAAGCCGACCAGAGAGGCGGGATGCACAAGCCACGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCACATTTCTACAATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACA
ATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCGATTTTTCATGATT
TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGTGTTTGGCCCCAAACTTG
GTAGACGGGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTGTGACCATTTAAAAAAGTGTCCACATTTCAGACACGTTAATGGCTACTGGCAAAAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGCGAGATTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCAAACCCCCCCGTCCCCCC
ATCACCGGAACCCCAATACCACCGATCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATAC
GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCGATCTGATCTTACAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAAC
GAGCGTGCGAGCGATCAACCGACCAAAGCAACAGGATGCGAAAGCCGA
Found at i:16500011 original size:167 final size:163
Alignment explanation
Indices: 16499765--16500119 Score: 489
Period size: 167 Copynumber: 2.2 Consensus size: 163
16499755 CGACCAAAGG
* * * * * *
16499765 GGCGGGATGTGCAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTGCCTCA
1 GGCGGGATGCGCAAGCCGTGGATCGGCCGGGTACCCCTCTGCGTACTGTCGATCCTACTACCTCA
* * *
16499830 ACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA-CTATCGAAT
66 ACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAATCGA-CGAAT
* *
16499894 CGAGCGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGA
130 AGAGCGGGCA----GGCAGGCACGACGTCGGCCAGAGA
* * * * *
16499932 GGCGTGATGCGCAAGCCGTGGATCGGTCGGGTACCTCTCTGTGTGCTGTCGATCCTACTACCAT-
1 GGCGGGATGCGCAAGCCGTGGATCGGCCGGGTACCCCTCTGCGTACTGTCGATCCTACTACC-TC
16499996 AACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAATCGACGAAT
65 AACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAATCGACGAAT
16500061 AGAGCGGGCAGGCAGGCACGACGTCGGCCAGAGA
130 AGAGCGGGCAGGCAGGCACGACGTCGGCCAGAGA
*
16500095 GGCGGGATGCGCAAGCCTTGGATCG
1 GGCGGGATGCGCAAGCCGTGGATCG
16500120 ATAGGGTGGT
Statistics
Matches: 168, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
163 46 0.27
167 119 0.71
168 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (163 bp):
GGCGGGATGCGCAAGCCGTGGATCGGCCGGGTACCCCTCTGCGTACTGTCGATCCTACTACCTCA
ACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAATCGACGAATA
GAGCGGGCAGGCAGGCACGACGTCGGCCAGAGA
Found at i:16500747 original size:26 final size:26
Alignment explanation
Indices: 16500718--16500770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16500708 CCAGTCCGAT
*
16500718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
16500744 CTTAGACTGGCAATGAGCTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
16500770 C
1 C
16500771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:16503243 original size:26 final size:26
Alignment explanation
Indices: 16503192--16503243 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16503182 CGGGTCCGAT
*
16503192 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
16503218 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
16503244 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16504110 original size:26 final size:26
Alignment explanation
Indices: 16504081--16504133 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16504071 CCGGTTCGAT
*
16504081 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16504107 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16504133 C
1 C
16504134 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16504468 original size:889 final size:882
Alignment explanation
Indices: 16502565--16505115 Score: 3683
Period size: 889 Copynumber: 2.9 Consensus size: 882
16502555 GAGCGCTCAA
* *
16502565 CCGGCCAGAG-GGACGGGATGCGCAAGCCG-GG---GATAGGGTGGTAGGTGGGTTTAGGCACAT
1 CCGGCCAGAGAGG-CGCGACGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
16502625 CTTCATATTTCTGCCATGCCAATGCGAATTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
65 CTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
16502690 CCTTCATGTGAAGTTTCGTGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTT
130 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTT
* * *
16502755 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACCTGGTAAATGTGATC
195 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGT-TTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
16502820 CTTGTATTTATT-TTGGTATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
259 CTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
16502884 GACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTATAAAA
323 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
**
16502949 TCTCAAAAACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCTAA-ATA
388 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GATAGGGGGCC-AATATA
* * * *
16503013 AGGCCCAAGTACAAAG-ACCCACCGTACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGG
451 AGG-CCAAGTAC-CAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGTCGG
16503077 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAG
513 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAG
* * * *
16503142 CACATGGCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCGGGTCCGATCTTAGACTGGGAATG
578 CACAT-GCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATG
* * * * * *
16503207 AACTCCATATGCTTAGACTGGGAATGAACACCGTATGTCTAAGTCAACCCATGAAATGAGCATCC
642 AACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCC
* * * ** *
16503272 GGGTGCTCAGCCGACCAAAGGGGCGGGATGTGCAAGTCGGGGATCAACCGGGTCTCCCTCTGCGT
707 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAACCGGGTCGCCCTCTGCGT
* * ****
16503337 GCTGCCTATCCTGCTGCTGCAACCCTTGGTCCTGTCTAATCTTAGACTGGGAATGAACTCCGTAT
772 GCTACCGATCCTGCTGCTGCAACCCACACTCCTGTCTAATCTTAGACTGGGAATGAACTCCGTAT
*
16503402 GCCTAAGCCAACTGATGAAACGAGCGGGCAGGCGGGCGGCACTACG
837 GCCTAAGCCAACTGACGAAACGAGCGGGCAGGCGGGCGGCACTACG
* * * * * *
16503448 TCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGCGACGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATC
16503513 TTCATATTTCTGCCATGCCAATGCCATTTTT-TAGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 TTCATATTTCTGCCATGCCAATGCCATTTTTCT-GGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
16503577 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
130 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTT
* *
16503642 ACGGTTCGGGATTTTTTAAAATCTTTTCAGAAGGCTTTTTGGCCCCAAACTTGGTAGACGTGATC
195 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG-TTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
16503707 CTTGTATTTTTGTTGGCGTGCACAAAAATATTCATCTAAAAACTCGAAGTGTACAACATTTTGTG
259 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
16503772 ACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
324 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
16503837 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGTATAGGGGGACAATATAAT
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG-ATAGGGGGCCAATATAA-
* *
16503902 GGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGCCGGA
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG--CCCCCCGATCGTCGGA
* * * *
16503967 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAAAAAAATGCAGCACTAGC
514 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGC
*
16504032 ACATGCCAGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGA
579 ACATGCC-GAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
**
16504097 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTAG
643 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCG
* * *
16504162 GGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CTGGGGATCGACCGGGT-GCCTTCTGCGT
708 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTC-GGGGATCAACCGGGTCGCCCTCTGCGT
* * * * *
16504225 GCTATCGATCCTGCTGCTGCAATCGACACT-CTGGTTTGATCTTAGACTGGGAATGAACTCCGTA
772 GCTACCGATCCTGCTGCTGCAACCCACACTCCT-GTCTAATCTTAGACTGGGAATGAACTCCGTA
*
16504289 TGCCTAAGCCAA-TCGACGAAACG-GCTGGGCGGGCGGGCGGGCACTACG
836 TGCCTAAGCCAACT-GACGAAACGAGC-GGGCAGGCGGGC-GGCACTACG
* *
16504337 CCGGCCTGAGAGGTGCGACGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGCGACGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
16504402 TTCATATTTCTGCCATGCCAATCCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
16504467 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTATGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTA
* * * **
16504532 CGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTCTCACCCCAAACTTGGTAGACGTGATCC
196 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG-TTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
16504597 TTGTATTTTTGTTGGCATTC-CAAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
260 TTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
16504661 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGGAAACCTGTAAAAT
324 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
16504726 CTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAG
* *
16504791 AGCCAAGTACCAGCACCCATCGCA-ATCATGTGCGCACA-------CCCCCCGATTGTCAGAACC
453 -GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAACC
* **
16504848 CCAATGTCGCCGGTCAGGTTCTCCGCCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACA
517 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACA
*
16504913 TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGATTGGGAATGAACT
582 TG-CCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * *
16504978 TCGTATGCTTAGACTGGGAATTATCTCCGTATACCTAAGTCAACCCACGAAATGATCGTGCGGGC
646 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGGGC
* * * ** * *
16505043 GCTCAGCCGGCTAGAGGGGCGGGATGAAAAAGTCGGGGAT-TGCTCGGGTCCCCCTCTGCGTGTT
711 GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAAC-CGGGTCGCCCTCTGCGTGCT
*
16505107 GCCGATCCT
775 ACCGATCCT
16505116 AGTGCAGCAA
Statistics
Matches: 1503, Mismatches: 136, Indels: 62
0.88 0.08 0.04
Matches are distributed among these distances:
877 1 0.00
878 232 0.15
879 21 0.01
883 24 0.02
884 4 0.00
886 8 0.01
887 414 0.28
888 124 0.08
889 672 0.45
890 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
CCGGCCAGAGAGGCGCGACGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGTTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGGCCAATATAAGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAACCCCAA
TGCCGCCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCC
GAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAACCGGGTCGCCCTCTGCGTGCTACCGAT
CCTGCTGCTGCAACCCACACTCCTGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACTGACGAAACGAGCGGGCAGGCGGGCGGCACTACG
Done.