Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 86 of 160
Found at i:16505008 original size:26 final size:26
Alignment explanation
Indices: 16504959--16505009 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16504949 CCGGTCCGAT
* *
16504959 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16504985 CTTAGACTGGGAATTATCTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16505010 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16505180 original size:26 final size:26
Alignment explanation
Indices: 16505144--16505196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16505134 CTGGTCCGAT
* *
16505144 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16505170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16505196 C
1 C
16505197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16505278 original size:185 final size:185
Alignment explanation
Indices: 16504946--16505355 Score: 560
Period size: 185 Copynumber: 2.2 Consensus size: 185
16504936 CGTAACCCTT
* * *
16504946 GGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATTATCTCCGTATA
1 GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATA
*
16505011 CCTAAGTCAACCCACGAAATGATCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGAAAAAGT
66 CCTAAGTCAACCCACGAAATGATCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAAAAAGT
* *
16505076 CGGGGATTGCTCGGGTCCCCCTCTGCGTGTTGCCGATCCT-A-GTGCAGCAA-CGCTC
131 CGGGGATCGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGATGT-C-GCAAGC-CTC
*
16505131 GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
1 GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATA
***
16505196 CCTAAGTCAACCCACGAAATG-TGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
66 CCTAAGTCAACCCACGAAATGAT-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAAAAAG
* * * * *
16505260 TTGGGGATCGAC-CGGGTCCCCTTCTGTGTGCTGTCGATCCTGATGTCGTAAGCCTC
130 TCGGGGATCG-CTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGATGTCGCAAGCCTC
* ** * *
16505316 GGTCTGATCATATCTTAGACTGGGAATGAACTCCGTATGC
1 GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGC
16505356 CTAAGCCAAC
Statistics
Matches: 200, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
184 1 0.00
185 193 0.96
186 4 0.02
187 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (185 bp):
GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATA
CCTAAGTCAACCCACGAAATGATCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAAAAAGT
CGGGGATCGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGATGTCGCAAGCCTC
Found at i:16507330 original size:26 final size:26
Alignment explanation
Indices: 16507301--16507354 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16507291 TCTGTTTCGA
16507301 GCTTAGACTAGGAATGAACT-TCGTAT
1 GCTTAGACTAGGAATGAACTCT-GTAT
*
16507327 GCTTAGACTAGGAATTAACTCTGTAT
1 GCTTAGACTAGGAATGAACTCTGTAT
16507353 GC
1 GC
16507355 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCTGTAT
Found at i:16508228 original size:26 final size:26
Alignment explanation
Indices: 16508192--16508244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16508182 CCGGTCTGAT
*
16508192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16508218 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16508244 C
1 C
16508245 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16509968 original size:26 final size:26
Alignment explanation
Indices: 16509917--16509969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16509907 CCGATCCGAT
*
16509917 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16509943 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16509969 C
1 C
16509970 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16511467 original size:26 final size:26
Alignment explanation
Indices: 16511438--16511490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16511428 CCGATCCAAT
* *
16511438 CTTAGGCTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16511464 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16511490 C
1 C
16511491 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16512380 original size:26 final size:26
Alignment explanation
Indices: 16512329--16512381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16512319 CCGATCCGAT
*
16512329 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16512355 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16512381 C
1 C
16512382 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16512891 original size:886 final size:884
Alignment explanation
Indices: 16511404--16513609 Score: 2987
Period size: 890 Copynumber: 2.5 Consensus size: 884
16511394 GAAAAATGCG
* * * * *
16511404 GCATGTGCTGTCGTAACCCTCGATCCGATCCAATCTTAGGCTGTGAATGAACTCCGTATGCTTAG
1 GCATGTGCTGTCATAACCCTCG-TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * *
16511469 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTTCGGGTGCTTAGCCGGCC
65 ATTGGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCC
* *
16511534 AGAGGGGCGGGATGCGTAAGTCGGGGTTCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
129 AGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-CGATCCTACTA
* *
16511599 CCGTAACCCTT-AGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCG
193 CCGCAA-CCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACTG
* * ** *
16511662 ACGAAACGGGCGGGCGGGAGGGCGGCCGGGTACTATGCCGGCCAGAGAGGCACGATGCGTAAGCC
256 ACGAAACGGG-GGGCGGGCGGGCGACC--G--CTATGCCGGCCAGAGAGGCGGGATGCGAAAGCC
* * *
16511727 ATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TCGCCGTGCCAATGCCAT
316 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCGTGCTAATGCCA-
* * * *
16511791 TTTTTCTGTCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGCC
379 TTTTTCTG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
16511856 GACTCATTTTCTATTTTTCACCATTTTTGAAAATTTTACGGTTCGAGATTTTTTAAAATTCTTTC
443 AACTCATTTTCTATTTTTCACCATTTTTGAAAATTTTACGGTTCGAGATTTTTAAAAATTCTTTC
* * * *
16511921 AGCAGGATTTTTGGCGCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAA
508 AGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAA
* *
16511986 AATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCA
573 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
16512051 GAAAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAG
638 GAAACTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16512115 TTCT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
703 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACAT
*
16512179 CATGTGCGCACACCCCCTGGT-CCCCCCATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCG
768 CATGTGCGCACACCCCCCGGTCCCCCCCATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
16512243 GCAATGCTGTCCCGGCAAAGAAAAATACGGCACCAGCAAATGCTCGAGCCCA
833 ACAATGCTGTCCCGACAAAGAAAAATACGACACCAGCAAATGCTCGAGCCCA
* * *
16512295 GCATGTGCTATCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAG
1 GCATGTGCTGTCATAACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
16512360 ACTGGGAATGTACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCCAGCC
65 ATTGGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCC
* * * *
16512425 AGAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGGT-CCCCTCTGCGTGCTGTCGATCCTGCTG
129 AGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-CGATCCTACTA
* * ** * * * *
16512489 CTGCAACCTTCGGTATGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAGGCCAACTGAC
193 CCGCAACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGAC
* * *
16512554 GAAACGGGTGGGCGGGCGGGCGACCGCTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
258 GAAACGGG-GGGCGGGCGGGCGACCGCTATGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGAT
* *
16512619 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCTAATGCCATTTTTCTA
322 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCTAATGCCATTTTTCT-
*
16512684 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTT
386 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATT
** * * *
16512749 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAATTGTTTTAGAAGGA
451 TTCTATTTTTCACCATTTTTGAAA-ATTTTACGGTTCGAGATTTTTAAAAATTCTTTCAGAAGGA
*
16512814 GTTTTGGCCCCAAACTTGGCAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAG
515 GTTTTGGCCCCAAACTTGGCAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * **
16512879 CTAAAAACTCGAAGTGTACAATATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTT
580 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAAC-T
* *
16512944 TTTACTGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
644 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
16513009 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCTCCCATCCCACATCATGTG
709 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTG
* * * *
16513074 CGCACACCCCCCGGTCCCCCCCATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
774 CGCACACCCCCCGGTCCCCCCCATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATG
* * * **** ** *
16513139 GTGTCCCGACGAAGAAAAATATGATTTTAGCCCATGCTTGAGCCCA
839 CTGTCCCGACAAAGAAAAATACGACACCAGCAAATGCTCGAGCCCA
* * * * *
16513185 GTATGTGTTGCCATAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAG
1 GCATGTGCTGTCATAACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* *
16513250 ATTGGGAAT-TAACTCCGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
65 ATTGGGAATGT-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-C
* * ** * **
16513314 TAGATGGGTAGGATGCTCAAG-CTGGGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCCTAC
128 CAGAGGGGCGGGATGCGCAAGTC-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGC-GATCCTAC
* * **
16513378 TACCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATATCTAAGCCAACT
191 TA-CCGCAACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACT
* * *
16513443 GATGAAA-------CGGGCGGGC-A---CTATGCCGGCCAGAGAGGCGGGATGTGAAAGTCGTGG
255 GACGAAACGGGGGGCGGGCGGGCGACCGCTATGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGG
16513497 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTG-TCAATGCCATTTTT
320 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCT-AATGCCATTTTT
16513561 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
384 CT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
16513610 ACTAGCAGCA
Statistics
Matches: 1157, Mismatches: 141, Indels: 45
0.86 0.10 0.03
Matches are distributed among these distances:
879 1 0.00
880 140 0.12
883 1 0.00
884 9 0.01
885 87 0.08
886 238 0.21
887 1 0.00
888 61 0.05
889 84 0.07
890 313 0.27
891 165 0.14
892 57 0.05
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (884 bp):
GCATGTGCTGTCATAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
TTGGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAG
AGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCGATCCTACTACCG
CAACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAA
ACGGGGGGCGGGCGGGCGACCGCTATGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCTAATGCCATTTTTCTGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTA
TTTTTCACCATTTTTGAAAATTTTACGGTTCGAGATTTTTAAAAATTCTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGCAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACAC
CCCCCGGTCCCCCCCATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTGTCCC
GACAAAGAAAAATACGACACCAGCAAATGCTCGAGCCCA
Found at i:16513881 original size:26 final size:26
Alignment explanation
Indices: 16513852--16513904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16513842 CCGGTCCAAT
*
16513852 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16513878 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16513904 C
1 C
16513905 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16514764 original size:26 final size:26
Alignment explanation
Indices: 16514735--16514787 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16514725 CCGATCTGAT
16514735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16514761 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16514787 C
1 C
16514788 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16515652 original size:889 final size:886
Alignment explanation
Indices: 16513609--16516534 Score: 4063
Period size: 889 Copynumber: 3.3 Consensus size: 886
16513599 ATGTGAAGTT
* * *
16513609 TACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
* *
16513673 GACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
16513737 CCCCGGTCCTCCCC-ATCGTCGGAACCCC-ATTTACCGTCGGTCAGGTTATCCGATGATGGTGTC
131 CCCCGGTCC-CCCCGATCGTCGGAACCCCAATGT--CGCCGGTCAGGTTCTCCGA-CATGGTGTC
* *
16513800 CCGATGAAG----A------A--A--A-ATG--C--G----GCATGTGCTGCCGTAACCCTCGAT
192 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGAT
* * *
16513842 CCGGTCCAATCTTAGGCTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
257 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * ** * *
16513907 AAGTCAACCCACAAAAC-AAGCATTCAGGCGCTTAGCCGGCCAGAGGGGTGGGATGCGTAAGCCG
322 AAGTCAACCCACGAAACGAA-CGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCG
* * * * *
16513971 GGGTTCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCGATCCGA
386 GGGATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCCTACTGCTGTAACCCTCGGTCCGATCCAA
* *
16514036 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGACGGGCGGTC-GG-GT
450 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGT
* * * * *
16514099 ACTATGCCGGCCAGAGAGGCGCGATGCGTAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGG
515 ACTACGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGG
* ** *
16514164 CACATCTTCATATTTTTGCCGTGCCAATGCCATTTTTTCTATCTTGTAAATTCATATAATGGTCC
580 CACATCTTCATATTTTTGCCATGCCAATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCC
*
16514229 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACCATTTTTGAAA
644 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTT-AAA
* * *
16514294 A--TTTTACGGTTCGAGATTTTTTAAAAATTTTTCAGCAGGATTTTTGGCCCCAAACTTGGTAGA
708 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
16514357 CATGATCCTTCTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTTGAAGTGTATAAGA
773 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
16514421 TTTTGGGACCATTTGAAAAAAGTGTCGCCATTTCAGAAACTTTAATGGC
838 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
*
16514470 TACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTC-TGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
16514534 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
16514599 CCCCGGTCCCCCCTATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCC-AGCATGTTGTCTCG
131 CCCCGGTCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGA-CATGGTGTCCCG
* * * *
16514663 ACGAAGAAAAATGCGGAAGCAGCACACGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCG
195 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCG
* *
16514728 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
260 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
16514793 TCAACCCACGAAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGA
325 TCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGA
* * * * * * *
16514858 TCGACCGAGTCCCCGTCTGCGTGCTGCCAATCCTGCTGGTGCAACCCTCGGTCCGGTCCAATCTT
390 TCGATCGGGTCCCC-TCTGCGTGCTGCCGATCCTACTGCTGTAACCCTCGGTCCGATCCAATCTT
* * *
16514923 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGGGCGGGTGGGCGGGCGACCAC
454 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCG--TAC
** * *
16514988 TACGTTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGCTTTAGGCA
517 TACGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCA
* *
16515053 CATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTT
582 CATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
16515118 AAGGCTTCATGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
647 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTT
*
16515183 TTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
712 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
16515248 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
777 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
16515313 GTGACCATTTGAAAAAAGTGTCCCCAATTCA-AACACTTTAATGGC
842 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGC
*
16515358 TACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
* * * * *
16515423 GAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCACATACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
16515488 CCCCGGTCCCCCC-ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGGTGTCCCG
131 CCCCGGTCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGAC-ATGGTGTCCCG
* * * * *
16515552 ATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCGTTCTG
195 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCG
*
16515617 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
260 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
16515682 TCAACCCACGAAATGAGCGTACGGGCACTCAGCCGGCCAGAAGGGCAGGATGCACAAGTCGAGGA
325 TCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGA
* * * * * * * *
16515747 TCGGTTGGGACCACCTCTGCATACTACCGATCCTACTGCTGTAACCCTTGGTCCGATCTAATCTT
390 TCGATCGGGTCC-CCTCTGCGTGCTGCCGATCCTACTGCTGTAACCCTCGGTCCGATCCAATCTT
* * * *
16515812 AGACTGGGAATGAACTCCGCATGCCTAAGCTAACCGACAAAACGGGCGGGCGGGTGGGCGGGTAC
454 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGC--GTAC
* * * *
16515877 TGCACCGGCCAGAGAGGCGGGATGTGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
517 TACGCCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCA
*
16515942 CATCTTCATATTTGTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
582 CATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* * * * *
16516007 AAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTTTCATAAATTTTGAAACTT
647 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTT
* * *
16516072 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTG
712 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * *
16516137 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAACTAAAAACACGAAGTGTACAAGATTTT
777 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
16516202 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
842 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
* * * **
16516247 CACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCAAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
** *
16516312 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATTGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * *
16516377 CCACGGCCCCCCTCGATCGTCGGAACCGCAATATCACCGGTCAGGTACTTCGACGATGGTGTCCC
131 CCCCGGTCCCCC-CGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGAC-ATGGTGTCCC
* * * * *
16516442 GACGAAGAAAAATACGGCACTAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
194 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
*
16516507 GGTCTGATCTTAGACTGGGAATGAACTC
259 GGTCCGATCTTAGACTGGGAATGAACTC
16516535 TATATGCCTA
Statistics
Matches: 1829, Mismatches: 190, Indels: 62
0.88 0.09 0.03
Matches are distributed among these distances:
860 15 0.01
861 125 0.07
862 38 0.02
863 3 0.00
864 1 0.00
870 1 0.00
872 1 0.00
874 1 0.00
875 2 0.00
877 1 0.00
879 1 0.00
882 4 0.00
883 238 0.13
884 4 0.00
885 5 0.00
886 84 0.05
887 177 0.10
888 161 0.09
889 836 0.46
890 5 0.00
891 126 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGTCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACATGGTGTCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGAT
CGATCGGGTCCCCTCTGCGTGCTGCCGATCCTACTGCTGTAACCCTCGGTCCGATCCAATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGTACTACG
CCGGCCAGAGAGGCGGGATGCGAAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTTTTTA
CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
Found at i:16515653 original size:26 final size:26
Alignment explanation
Indices: 16515624--16515676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16515614 CTGGTCCGAT
*
16515624 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16515650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16515676 C
1 C
16515677 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16518140 original size:26 final size:26
Alignment explanation
Indices: 16518104--16518156 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16518094 CTGGTTTGAT
16518104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16518130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16518156 C
1 C
16518157 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16518292 original size:885 final size:882
Alignment explanation
Indices: 16516486--16521891 Score: 6546
Period size: 885 Copynumber: 6.2 Consensus size: 882
16516476 GCCCAGCATG
* ** * ** *
16516486 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAG
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16516551 CCGACGAAACGAACGGGCGGGCGGGCGGGCACTTCGCCGGCCAGAGAGGAGGGACGCGCAAGCCG
66 CCGACGAAACG-A---GCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
* * *
16516616 TGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGATGCCAATGCCATTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
16516681 TTCTGGCTTGTAAATTAATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
192 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * *
16516746 TCG-TTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAA
257 TCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * *
16516810 AAGGAGTCTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTGCTTGCACTAAAAAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
16516875 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCAATTTTAGA
386 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
16516940 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * * *
16517005 TCGAGGTTTGATGATAGATAGGGAGCGAATATAAGGGCCAAGCACCAGTACCCATCGCACATCAT
516 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
16517070 TTGCGCACACCCACCCGGCCCCCCCGATCGTCAGAACCCCTATGCCGCCGGTCAGGTTCTCCGAC
581 GTGCGCACACCC-CCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC
* * * * * * * *
16517135 AATGGTGTCCCGACGAAGAAAAATGAGGCACTATCAAATGCCCTAGCCCAGCATGTGCTACCGTA
645 GATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * * * *
16517200 ACCCTCGGTTTGATCCAATCATAGAATGGGAATGAATTCCGTATGCTTAGACTAGGAATGAACTC
710 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
16517265 CGTATGCCCAAGTCAACCTACGAAACGAGTGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGT
775 CGTATGCCTAAGTCAACC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGC
* *
16517330 GGAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCA-ATCT
838 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTG-CAGATCC
* * * *
16517375 TGCTGCCGCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAATTCCGTACGCCTAAGCCA
1 TGCTGCCGCAACCCTTAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
16517439 ACCGACAAAACAAGCGGGCGAGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATTG
65 ACCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGG
* * *
16517504 ATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAGTGCCATTTTTC
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC
*
16517569 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * *
16517634 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGATG
260 TTTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
**
16517699 GAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
16517764 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
389 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
16517829 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTCAGGGGGTGTGAGTTCTTG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
16517894 AGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTA
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * *
16517959 CGCACACCCCCTAGCACCCGCCGAT-GCCGGAACCCCAATGCCACCGGTTAAGTTCTCCGACGAT
584 CGCACACCCCCCGGC-CCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGAT
* ** * * * **
16518023 GGTATCCCGGGGAAAAAAAATGCAGCACCAGCACAAGCCCGAGCATAGCATGTGCTGCCGCAACC
648 GGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* **
16518088 CTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
713 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
16518153 ATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGCAGGATGCGCA
778 ATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCA
* ** ** *
16518218 AGCCGAGGATCAACCGGGTCCCCCTCTGGGTGTTGCCAG-TCC
841 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTG-CAGATCC
* * * * * **
16518260 TGCTGCCGTAACCTTTGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTGAA
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16518325 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGTGCAAGTCATGGA
66 CCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGA
*
16518390 TCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
* *
16518455 GGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-AACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
16518519 TTTCCTATTTTTCAACAATTTT-AAACTTTTGACTGTT-GACGAATTTTTTAAAAATTTTTTTC-
261 TTT-CTATTTTTC-ATGATTTTGAAACTTTTTACGGTTCG--GGATTTTTT-AAAA-TTTTTTCA
*** * **
16518581 GAAGTTTTTTTTGGCCCCAAACCTT-GTAGACGTGGTCAATGTATTTTTGTTGGCAAT-CAC-AA
320 GAAG-GAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAA
* * ** *
16518643 AACATTC-GCTAAAAACTC-GAGTGTACAAGATTTTGTGACCATTTGAAAAAAACAGTCCCTATT
382 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATT
* *
16518706 TCAGACACTTTAATAGCTACTGGCAGCGAAA-CTGT-AAATCTCAAAAATGCTCTTTAAGGGGTT
446 TCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTC--AAATGCTCTTTAAGGGGGT
* * *
16518769 GTGA-TTCCCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATTG
508 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ***
16518833 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGACCAGGT
573 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGT
** * * *
16518898 TCTCCGGTGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGTCGGAGCCCAACATGTG
637 TCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * ** * *
16518963 CTGCTGCAACCCT-GATCTAGTTCGATCTTAGACTTAGAATGAGCTCCTTATGCTTAGACTGGGA
702 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * * *
16519027 AAGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACGCAACCAGCCAGAGGGG
767 ATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
16519092 CGAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTATGTGCTGCTGATCC
831 CG-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCAGATCC
* * * * * *
16519145 TACGGCTGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16519210 CCGACGAAACGAGCGGGC-AGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCC
66 CCGACGAAACGAGCGGGCGA-GC--G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
*
16519274 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATT
126 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
16519339 TTTCTGGCTTGTAAATTCATACAATGGT-CCTTAAAGCCTTCCAT-TGAAG-TTCATGGCACAGA
191 TTTCTGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTT-CATGTGAAGTTTCATGGCA-AGA
* *
16519401 CGACTCG-TTTCTA-TTTTCATGATTTTTGGAAACTTTTTATGGTTTGGGATTGTTTTAACAATT
253 CGACTCGTTTTCTATTTTTCATGA-TTTT-GAAACTTTTTACGGTTCGGGATT-TTTTAA-AATT
* **
16519464 TTTTCAGAAAGGCA-TTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGGCATTT
314 TTTTCAG-AAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
16519528 ACAAAACATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCC
377 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
16519593 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTCTTTAAGGG
442 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-C-TCTTTAAGGG
* **
16519658 AGTGGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGGTGAATATAAGGGCCAAGTACCAGCACC
505 GGT-GTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
16519723 CATCGCATATCTTGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGTCGTCGGT
568 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGT
* * * * *
16519787 TAGGTTCTCCGATGATGGTGTCCCGATGAAGAAAAAAGTGGCACCAGCACATGCCTGAGCCCAGC
632 TAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * *
16519852 ATGTGCTGGTGCAGCCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC-----C
697 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
16519912 ------T-AA----G--T--C-AA--CAA--ACGAAACGAGCGTGCTGGCGCTCAGCCGGCCAGA
762 TGGGAATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
16519957 GGGGCGAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTATGTGCTGCTGATCA
827 GGGGCG-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCAGATCC
* * *
16520014 TACTGCCACAACCCTTAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16520079 CCGACGAAACGAGCGGGC-AGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCC
66 CCGACGAAACGAGCGGGCGA-GC--G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
16520143 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
126 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
16520208 TTTCTGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAA
191 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* *
16520272 CTCATTTTCTACTTTTT-ATAAATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
256 CTCGTTTTCTA-TTTTTCAT-GATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
16520336 AGAAAGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
319 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
16520401 AAGTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCA
384 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
16520466 GAAACTTTAATGGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGT
449 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * *
16520531 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATTGCACACC
514 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
16520596 ATGTGCGCACACCCCCC-GCCCCCCCGATCGTCAGAACCCCAATGTCGTCGGTTAGGTTCTTCGA
579 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGA
** * *
16520660 CGATGGTGTCCCGGTGAAGAGAAATGCGGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGC
644 CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
** ** * *
16520725 AACCCTCGGTCCAGTCTAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
709 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
*
16520790 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGC-CAGCCGGCCAGAGGGGCGGGAT
774 CCGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGC-GGAT
* * * * * *
16520854 GCGTAACCCGGGGATCGACCGGATCCCCCTCTGCGTGCTGCCGATCC
836 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCAGATCC
* **
16520901 TGCTACCGCAACCCTTAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
16520966 CCGATGAAACGAGC--G-G-GCGGGCACTACGTCGACCACAGAAGCGAGATGCGCAAGCCGTTGA
66 CCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGA
* *
16521027 TCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTCT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
*
16521092 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
16521157 TTTCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTCAAAATTTTTTCAAAAGT
261 TTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
* *
16521222 AGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
16521287 GCTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 GCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
16521351 TTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTGCTCG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
16521416 AGGTTTGATGAGGGATAGGTGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * * ** * *
16521481 CGTACA-CCCCCGGCCCCCTCGATAGCCGGGACACC-AT--CACCGG--A-GAAC-CTGAC---C
584 CGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATG
* * **** * *
16521535 G-G---CGGC-ATTG-GGGTTCCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACC
649 GTGTCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
16521594 CTCGGTCCGCTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
713 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * * * *
16521659 ATGCCTAAGTCAACAAATGAAACAAGCGTGCAGGCACTTAGCCGACCAGAGGGGTGGGATGCGAA
778 ATGCCTAAGTCAAC-CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGATGCGCA
* *
16521724 AGTCGGGGATCGGTCGGGT--CCC-CT---T-CTGC-G----
841 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCAGATCC
** * * * * * **
16521754 TGCTGCCGCAACCCTCGGTCCGATCCGATTTTAGACTGGGAATGAACTTCAAATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
16521819 CCGATGAAATGAGCGGGCGGGCGGACGGGCACTACGATGGCCAAAGAGGCGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGC--G-AG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
16521884 TGGATCGA
127 TGGATCGA
16521892 AATGTACAAG
Statistics
Matches: 3933, Mismatches: 474, Indels: 248
0.84 0.10 0.05
Matches are distributed among these distances:
853 68 0.02
855 1 0.00
857 1 0.00
858 5 0.00
859 1 0.00
860 2 0.00
861 187 0.05
862 49 0.01
863 29 0.01
864 14 0.00
865 169 0.04
866 161 0.04
867 14 0.00
868 46 0.01
869 319 0.08
870 7 0.00
871 5 0.00
872 4 0.00
873 5 0.00
874 4 0.00
875 2 0.00
877 6 0.00
879 113 0.03
880 368 0.09
881 2 0.00
882 2 0.00
883 5 0.00
884 61 0.02
885 980 0.25
886 451 0.11
887 204 0.05
888 45 0.01
889 260 0.07
890 27 0.01
891 56 0.01
892 43 0.01
893 4 0.00
894 122 0.03
895 91 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGGT
GTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCCG
GGGATCGGCCGGGTCCCCCTCTACGTGCTGCAGATCC
Found at i:16520781 original size:26 final size:26
Alignment explanation
Indices: 16520745--16520797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520735 CCAGTCTAAT
*
16520745 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16520771 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16520797 C
1 C
16520798 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16521294 original size:880 final size:880
Alignment explanation
Indices: 16519884--16521891 Score: 2516
Period size: 880 Copynumber: 2.3 Consensus size: 880
16519874 CTGGTCCAAT
** *
16519884 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGTGCTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16519949 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTATGTGCTGCTGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
16520014 TACTGCCACAACCCTTAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16520079 CCGACGAAACGAGCGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCCA
196 CCGACGAAACGAGC-GGC-GGC--G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
16520144 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
255 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
16520209 TTCTGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAC
320 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * * *
16520273 TCATTTTCTACTTTTTATAAATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
385 TCGTTTTCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCA-
*
16520338 AAA-GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
449 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
16520402 AGTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16520467 AAACTTTAATGGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT
* ** * *
16520532 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATTGCACACCA
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
16520597 TGTGCGCACACCCCCCGCCCCCCCGATCGTCAGAACCCCAATGTCGTCGGTTAGGTTCTTCGACG
708 TGTGCGCACACCCCCCGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACG
* * *
16520662 ATGGTGTCCCGGTGAAGAGAAATGCGGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
773 ATGGTGTCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
16520727 CCCTCGGTCCAGTCTAATCTTAGATTGGGAATGAACTCTGTATG
838 CCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
16520771 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGC-CAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
* * * * *
16520835 CCGGCCAGAGGGGCGGGATGCGTAACCCGGGGATCGACCGGATCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATC
* **
16520900 CTGCTACCGCAACCCTTAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
16520965 ACCGATGAAACGAGC-G-GGCGGGCACTACGTCGACCACAGAAGCGAGATGCGCAAGCCGTTGAT
195 ACCGACGAAACGAGCGGCGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGAT
* *
16521028 CGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTCTG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTG
*
16521093 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
16521158 TTCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTCAAAATTTTTTCAAAAGTA
390 TTCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGA
* *
16521223 GTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
16521288 CTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
16521353 TAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTGCTCGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAG
* *
16521418 GTTTGATGAGGGATAGGTGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
649 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * * * ** * * *
16521483 TACACCCCCGGCCCCCTCGATAGCCGGGACACC-AT--CACCGG--A-GAAC-CTGAC--CGGCG
714 CACACCCCCCGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGGTG
* *** * *
16521539 --GC-ATTG--G--GGTTCCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC
779 TCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
16521597 GGTCCGCTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
16521636 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAATGAAACAAGCGTGCAGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16521701 CGACCAGAGGGGTGGGATGCGAAAGTCGGGGATCGGTCGGGT--CCC-CT---T-CTG-CG----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * * * * **
16521754 TGCTGCCGCAACCCTCGGTCCGATCCGATTTTAGACTGGGAATGAACTTCAAATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
16521819 CCGATGAAATGAGCGGGCGGGCGGACGGGCACTACGATGGCCAAAGAGGCGGGATGCGCAAGCCG
196 CCGACG-AA--A-CGAGC-GGCGG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
16521884 TGGATCGA
255 TGGATCGA
16521892 AATGTACAAG
Statistics
Matches: 982, Mismatches: 124, Indels: 56
0.85 0.11 0.05
Matches are distributed among these distances:
853 61 0.06
854 2 0.00
856 1 0.00
857 6 0.01
858 3 0.00
859 2 0.00
860 2 0.00
861 41 0.04
862 2 0.00
863 3 0.00
864 3 0.00
865 165 0.17
867 1 0.00
869 3 0.00
871 3 0.00
873 3 0.00
874 2 0.00
875 1 0.00
877 4 0.00
879 105 0.11
880 373 0.38
881 6 0.01
883 3 0.00
885 1 0.00
887 184 0.19
888 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (880 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGGTGTC
CCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CTGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16521640 original size:26 final size:26
Alignment explanation
Indices: 16521603--16521662 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
16521593 CCTCGGTCCG
16521603 CTCCG-AT-CTTAGACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
16521627 CTCCGTATGCTTAGACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
16521653 CTCCGTATGC
1 CTCCGTATGC
16521663 CTAAGTCAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 27 0.79
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTGGGAATGAA
Found at i:16522268 original size:26 final size:26
Alignment explanation
Indices: 16522217--16522269 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16522207 CTGATCCAAT
* **
16522217 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16522243 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
16522269 C
1 C
16522270 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16523141 original size:26 final size:26
Alignment explanation
Indices: 16523112--16523164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16523102 CTGATCCGAT
16523112 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
*
16523138 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
16523164 C
1 C
16523165 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:16523814 original size:887 final size:886
Alignment explanation
Indices: 16521894--16524990 Score: 4410
Period size: 889 Copynumber: 3.5 Consensus size: 886
16521884 TGGATCGAAA
* *
16521894 TGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGGCACTTTAATGGCTACTGGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
16521959 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
16522024 AGGGGGCCAATATAAGGCCCAAGTATCAGCACCAATCGGACATCATGTGCGCACA-CCCCC-TGA
131 AGGGGGCCAATATAAGGGCCAAGTACCAGCACC-ATCGCACATCATGTGCGCACACCCCCCAGGC
* * * * *
16522087 CCCCCCGATCGCCGAAACCCCAATGCCTTCGGTCAGGTTCTCCGGCGATGGTGTCTCGATGAAGA
195 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA-A
* * * * *
16522152 AAAAAGT--GGCACCAGCACATGCCTGAGCCCAGCATCTGCTGGCGCAACCCTCGGTCTGATCCA
259 AAAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCG
* * **
16522215 ATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAA
323 ATCTTAGACTGAGAATGAACTCCT-TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * * * *
16522279 CCAACGAAATGAACGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGG
387 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGCGGGATGCGCAAGTCGGGGATCGG
* ** * *
16522344 CTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGAC
451 -TCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* * * * * * *
16522409 TGGGAATGAACTTCGAATGCCTAAGCTAATCGATGAAAAGAGCGGGCAGACGGGCAGTCGGACAA
515 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC-GG--G-C-GAC--
* *
16522474 ACACTACGTCGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
573 -CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** ** * * * *
16522539 GGTACATCTTTTTATTTCAGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATAGTC
637 GGCACATCTTCATATTTCTCCCGTGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
16522604 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
702 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
16522669 ACTTTTTATGGTATGGGATTTTTTAAAATTTTTTCAAAAGGATTTTTACCCCCAAACTTGGTAGA
767 ACTTTTTACGGT-TGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGA
* * * *
16522734 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
831 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCAAAG
* * * *
16522790 T-TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTAATTGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
16522854 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTGAGTTCTTGAGGTTTGATGAGGGA
66 AGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
16522918 TA-AGGGCCAATATAAGGGCCAGGTACCAGCAGCCATCGTACATCATGTGCGCACACCCCTC-GG
130 TAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCAGG
* *
16522981 CCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAA
194 CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAA
*
16523046 AAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGA
259 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGA
16523111 TCTTAGACTGAGAATGAACT-CTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
324 TCTTAGACTGAGAATGAACTCCT-TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * *
16523175 TCACGAAACGAGCATACGGGCGCTTAGCCGGCCAGAGGGACGGGATGCGTAAGTCGGGGATCGGT
388 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-CGGGATGCGCAAGTCGGGGATCGGT
* * * * * * * *
16523240 CAGGTCCTCCTCTGCGAGCTGTCGATCCTACTGCCGCAGCCCTTGGTCTGGTCTGAACTTAGACT
452 C-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT
*
16523305 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGCGGGCGACCACTACGT
516 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGACCACTACGT
16523370 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
581 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
16523435 TCATATTTCTCCCGTATCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
646 TCATATTTCTCCCGTGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
16523500 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTAC
711 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
*
16523565 GGTTCGAGATTTTTTATAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCT
776 GGTT-GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCT
*
16523629 TGTAATTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCAAAG
840 TGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCAAAG
*
16523676 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
16523741 AGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGG-GCTATGAGTTCTCGAGGTTTAATGAGGGA
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAG-TGTGAGTTCTCGAGGTTTGATGAGGGA
*
16523804 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCTGG
130 TAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CATCGCACATCATGTGCGCACACCCCCCAGG
* * *
16523869 CCCCCCCTGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGGTGTCCCGATGAA
194 CCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
* * * *
16523934 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCGGTCGTAACCCTCAGTCTGATCCG
258 AAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCG
* * * *
16523999 ATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGCGAAAGAACTCTGTATGCCTAAATCAAC
323 ATCTTAGACTGAGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
*** * *
16524064 CCACGAAACGAGCGTGTAAGCGCTCAGCCGGACAGAGGGGCGGGATGCACAAGTCGGGGATCGGT
388 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGTCGGGGATCGGT
* * * * *
16524129 CGGATCCCCCTCTACTTGTTGTCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT
452 CGG-TCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* **
16524194 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCCGTGCGGGCGGGCACTACG
516 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-GCGGGCGACCACTACG
* * *
16524258 TCGGCCAGAGAGACGGGATGTGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
580 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
16524323 TTCATATTTCTCCCGTGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCGCTTAAGC
645 TTCATATTTCTCCCGTGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
16524388 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
710 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
16524453 CGGTTTGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
775 CGG-TTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
*
16524518 TTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCCAAG
839 TTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCAAAG
* * *
16524566 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGT
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
16524631 AGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTC-CTGAGGTTTGATGAGAGA
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTC-GAGGTTTGATGAGGGA
** *
16524695 TAGGGGGTGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCAAG
130 TAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCC-AG
* * * *
16524760 GCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGGTGTCCCGACGAA
193 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAA
* * * * ** * * * *
16524825 GAAAAATACGACACCAGCACATGCCGGAGCCCAACATGTGCTGCTACAACCCTCGGACCGGTCCG
258 AAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCG
* *
16524890 ATCTTAGACT-AGGAATGAACTCCTTATGCTTAGACTGGGAATGAA-TTTCGTTTGCCTAAGTCA
323 ATCTTAGACTGA-GAATGAACTCCTTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCA
* * *
16524953 ACCCACGAAACGAGCGTGTGAGCGTTCAGCCGGCCAGA
386 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
16524991 AATTTGATCT
Statistics
Matches: 1985, Mismatches: 189, Indels: 59
0.89 0.08 0.03
Matches are distributed among these distances:
885 6 0.00
886 114 0.06
887 342 0.17
888 15 0.01
889 548 0.28
890 157 0.08
891 295 0.15
892 11 0.01
893 1 0.00
894 56 0.03
895 434 0.22
896 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCAGGCC
CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAAAA
AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATC
TTAGACTGAGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGTCGGGGATCGGTCGGT
CCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGACCACTACGTCGGCC
AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTCCCGTGTCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTG
AGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTCAAAG
Found at i:16527943 original size:26 final size:26
Alignment explanation
Indices: 16527914--16527966 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16527904 CTGATCCGAT
*
16527914 CTTAGGCTGGGAAAGAAATCCCTATG
1 CTTAGACTGGGAAAGAAATCCCTATG
* * * *
16527940 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAAATCCCTATG
16527966 C
1 C
16527967 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAAATCCCTATG
Found at i:16528053 original size:448 final size:452
Alignment explanation
Indices: 16527207--16528110 Score: 1198
Period size: 448 Copynumber: 2.0 Consensus size: 452
16527197 CTACTGACAT
16527207 CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGAAAG
1 CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGAAAG
* *
16527272 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTTGCACACCCCCCTGGCCC
66 GGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATG-TTGCACA-CCACCT---CC
** * *
16527337 CCACCGATCGTCGGAACCCCAACACCGCCGGTCAGGTTCTCCGATGATGGTGTCCTGGCGAAGAA
126 CCACCGATCACCGGAACCCCAACACCGCCGGTCAGGTTCTCCGATGATGGTGTCCCGACGAAGAA
*
16527402 AAAAGTGACACCAACACATGCCCGAGTCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATC
191 AAAAGTGACACCAACACATGCCCGAGTCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATC
* * * *
16527467 TTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCA
256 TTAGACTGGGAAAGAAATCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** * * * *
16527532 CGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGTGGCGGGATTCGCAAGCGGGGGATCGGTCGG
321 CAAAACGAGCATGAGGGCGCTCAACCAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * * *
16527597 GTCCCCCTCTACGTGCTGGCGATCCTGCTACCACAACCCTTAGTTCGATCCGATCTTAGACTGGG
386 GCCCCCCTCTACATGCTGGCGATCCTGCTACCACAACCCTCAGTCCGATCAGATCTTAGACTGGG
16527662 AG
451 AG
*
16527664 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGT-GAGGTTTGATGAGGGAAA
1 CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTT-GTCGAGGTTTGATGAGGGAAA
* *
16527728 GGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATG-TGCGCA-CACCT-CCC-T
65 GGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATGTTGCACACCACCTCCCCAC
** * *
16527789 CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGAAAAAT
130 CGATCACCGGAACCCCAACACCGCCGGTCAGGTTCTCCGATGATGGTGTCCCGACGAAGAAAAA-
* ** * *
16527854 ACG-G-CACCAGCAGGTGCTCGAG-CCAAGCATGTGCTGTCGCAACCCTCGATCTGATCCGATCT
194 A-GTGACACCAACACATGCCCGAGTCC-AGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCT
* *
16527916 TAGGCTGGGAAAGAAATCC-CTATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
257 TAGACTGGGAAAGAAATCCGC-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
16527980 CAAAATGAGCAT-ACGGGCGTTCAACCAACCAGAGGGGCGGGATGGGCAAGCCGGGGATCGATCG
321 CAAAACGAGCATGA-GGGCGCTCAACCAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * ** *
16528044 GGCCCCCCTCTGCATGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCAGATCTTAGACTGG
385 GGCCCCCCTCTACATGCTGGCGATCCTGCTACCACAACCCTCAGTCCGATCAGATCTTAGACTGG
16528109 GA
450 GA
16528111 ATGAACTCCG
Statistics
Matches: 392, Mismatches: 49, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
447 4 0.01
448 266 0.68
449 5 0.01
450 1 0.00
453 4 0.01
455 5 0.01
457 105 0.27
458 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (452 bp):
CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGAAAG
GGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATGTTGCACACCACCTCCCCACC
GATCACCGGAACCCCAACACCGCCGGTCAGGTTCTCCGATGATGGTGTCCCGACGAAGAAAAAAG
TGACACCAACACATGCCCGAGTCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGA
CTGGGAAAGAAATCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
CGAGCATGAGGGCGCTCAACCAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGCCCC
CCTCTACATGCTGGCGATCCTGCTACCACAACCCTCAGTCCGATCAGATCTTAGACTGGGAG
Found at i:16528827 original size:26 final size:26
Alignment explanation
Indices: 16528791--16528843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16528781 CCGGTTCGAT
16528791 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16528817 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16528843 C
1 C
16528844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16529483 original size:868 final size:863
Alignment explanation
Indices: 16527656--16530542 Score: 3713
Period size: 858 Copynumber: 3.3 Consensus size: 863
16527646 CCGATCTTAG
*
16527656 ACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGT-GAGGTTTGAT
1 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGAT
* * *
16527720 GAGGGAAAGGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATGTGCGCACACCT
65 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
16527785 CCCTCGATC-ACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGTCCCGACGAAGA
130 CCCCCGATCGA-CGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGA
** * * * * *
16527849 AAAATACGGCACCAGCAGGTGCTCGAGCCAAGCATGTGCTGTCGCAACCCTCGATCTGATCCGAT
194 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGAT
* *
16527914 CTTAGGCTGGGAAAGAAATCCCTATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
259 CTTAGACTGGG-AAG-AATCCATATGCTTA-A-TGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * ** *
16527979 ACAAAATGAGCATACGGGCGTTCAACCAACCAGAGGGGCGGGATGGGCAAGCCGGGGATCGATCG
320 ACAAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* *
16528044 GGCCCCCCTCTGCATGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCAGATCTTAGACTGG
385 GG-TCCCC-CT-C-TG-TGT-G--C-TAC-GCTGCAACCCTCAGTCCGGTCA-ATCTTAGACTGG
* *
16528109 GAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGG-GTGGCGGACGGGCACTATGCTG
439 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCG-GGCGG-C-GGCACTATGCCG
* * * *
16528173 GCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTCGTTGGTGGGTTTAGGCACATCTTC
501 GCCAGAGAGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16528238 ATATTTCT--AACGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATTGTCCCTTAAGCC
566 ATATTTCTGCAA--TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
16528301 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT
629 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT
16528366 GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT--ACGTGATCC
694 GGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * ** *
16528429 TTGTTCTTTTGTTGGCATGGATGAAAAAATTCATCTAAAAACTT-GAAGTGTACAAGATTTTGTG
758 TTG-TGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-TTCGAAGTGTACAAGATTTTGTG
16528493 ACCATTTGAAAAAAGTGTCCCCATTTCAGACA-TCTTAATGGCT
821 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACT-TTAATGGCT
* ** ** *
16528536 ACTGGAAGCAAACCTGTAAAATCTCAAACACTCTTTAAGAAGGTGTGAGTTCTTGAGGTTTGATG
1 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
16528601 AGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACA-CCC
66 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
16528665 CCCCGATCGACGGAACCCCAATGTCGCCGATCAGGTTCTCCAGCGATGGTGT-TCGACGAAGAAA
131 CCCCGATCGACGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
* * *
16528729 AATACGGCACCAGCACATGCCAGAGCCCA-CATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCT
196 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCT
*
16528793 TAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
261 TAGACTGGGAA-GAA-TCCATATGCTTA-A-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
16528858 AAAACGAGCGTGTGTGGCGCTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCGAGGATTG-GCTG
322 AAAACGAGCGTGTG-GGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-G
* * *
16528922 GGTCCCCCTCTGTGTGCTAC-C-GCAACCTTCGGTCCGGTCCAATCTTGGACTGGGAATGAACTC
385 GGTCCCCCTCTGTGTGCTACGCTGCAACCCTCAGTCCGGT-CAATCTTAGACTGGGAATGAACTC
*
16528985 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCGGTCACTACGCCGGCCAGAGAGT
449 CGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGC-GGCGG-CACTATGCCGGCCAGAGAGT
* * *
16529050 CGGGTTGTGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
511 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
16529115 AATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
576 AATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
16529180 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATAGTTTGGGATTT
641 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTT
*
16529245 TTTAAAATTTTTTC-GAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGT
706 TTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-GTTTTGT
*
16529309 TGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAA
769 TGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
16529374 AGTGTCCCCATTTTAGACACTTTAATGGCT
834 AGTGTCCCCATTTCAGACACTTTAATGGCT
*
16529404 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
1 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
16529469 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
66 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----
* * * *
16529534 CCGGCCCCCCCAATCGCCGGAACCCCAATGCCACC-AGTCACGTTCTCCGGCGATGGTGTCCCGA
127 -C--CCCCCCCGATCGACGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGGCGATGGTGTCCCGA
** * * * * * **
16529598 CGAAGAAAAATGTGACACCAACACATGCCCGAGTCCGGCATGTGCTCCCATAACCCTCGATCCGG
188 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGG
16529663 TCCGATCTTAGACT-GG--G-----A-ATG---AAT-----T----T-CGTATGCC-AAGTCAAC
253 TCCGATCTTAGACTGGGAAGAATCCATATGCTTAATGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
16529705 CCACAAAACAAGCGTGTAGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGCATGCCGGGGATCGAT
318 CCACAAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * **
16529770 CGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCTGCAACCCTCAATCTGGTTTGATCTTAGACT
383 CGGGTCCCCCTCTGTGTGCT----A-----C-GCTGCAACCCTCAGTCCGG-TCAATCTTAGACT
* * *
16529835 GGGAAT-AGACTCTGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGC-G-GGCACTATGCC
437 GGGAATGA-ACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGCGGCACTATGCC
* *
16529897 GACCAGAGAGGT-GGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
500 GGCCAGAGA-GTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
16529961 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCC
564 TCATATTTCTGCAATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* ** *
16530026 TTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACCATTTTTGAAACTTTTTAC
629 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT
* *
16530091 GGTTCGGGATTTTTTAAAATTGTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
694 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
16530156 TGTGTTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
759 TGTG-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGAC
*
16530221 TATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
823 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16530262 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATG
1 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
16530327 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACATCCC
66 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----
* * * * *
16530392 CCCTGGCCCCCCCGATCG-CTGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCTC
127 --C---CCCCCCCGATCGAC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCC
* * *
16530456 GATGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
186 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
*
16530521 AGTCCGATCTTAGACTGGGAAG
251 GGTCCGATCTTAGACTGGGAAG
16530543 GAAATTCGTA
Statistics
Matches: 1783, Mismatches: 169, Indels: 127
0.86 0.08 0.06
Matches are distributed among these distances:
850 56 0.03
851 24 0.01
852 8 0.00
853 1 0.00
854 1 0.00
857 2 0.00
858 467 0.26
859 13 0.01
860 118 0.07
861 4 0.00
862 66 0.04
863 3 0.00
864 1 0.00
865 1 0.00
866 108 0.06
867 210 0.12
868 223 0.13
869 5 0.00
870 1 0.00
872 1 0.00
873 3 0.00
874 3 0.00
875 2 0.00
876 53 0.03
877 134 0.08
878 112 0.06
879 47 0.03
880 116 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (863 bp):
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCCGATCGACGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCT
TAGACTGGGAAGAATCCATATGCTTAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
CGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTGTGTGCTACGCTGCAACCCTCAGTCCGGTCAATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGCGGGCGGCGGCACTATGCCGGCCAGAGAGTCGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAATGCCAATG
CCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTT
TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCT
Found at i:16531556 original size:16 final size:16
Alignment explanation
Indices: 16531532--16531594 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
16531522 GGATTTTTTT
*
16531532 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16531548 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
16531565 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
16531580 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16531595 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16531602 original size:33 final size:33
Alignment explanation
Indices: 16531537--16531605 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
16531527 TTTTTAGGAC
*
16531537 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
16531570 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
16531603 TTT
1 TTT
16531606 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:16532149 original size:38 final size:38
Alignment explanation
Indices: 16532095--16532215 Score: 188
Period size: 38 Copynumber: 3.2 Consensus size: 38
16532085 GTTTGAGCAG
* * *
16532095 TCTGACCAGTTCGGCGGTTGGATCGACGGTTCGGGCGA
1 TCTGACCGGTTTGGCGGTCGGATCGACGGTTCGGGCGA
16532133 TCTGACCGGTTTGGCGGTCGGATCGACGGTTCGGGCGA
1 TCTGACCGGTTTGGCGGTCGGATCGACGGTTCGGGCGA
* * *
16532171 TCTGACCGGTTTGGCGGTCGGATCGACGGTCCGAGCAA
1 TCTGACCGGTTTGGCGGTCGGATCGACGGTTCGGGCGA
16532209 TCTGACC
1 TCTGACC
16532216 AGTTCAATCC
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 77 1.00
ACGTcount: A:0.13, C:0.26, G:0.38, T:0.23
Consensus pattern (38 bp):
TCTGACCGGTTTGGCGGTCGGATCGACGGTTCGGGCGA
Found at i:16532824 original size:17 final size:17
Alignment explanation
Indices: 16532785--16532828 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
16532775 TATTTTTTTA
*
16532785 TTTTTGTTTCTGTTTTGG
1 TTTTT-TTTTTGTTTTGG
16532803 TTTTTTTTTTGTTTTGG
1 TTTTTTTTTTGTTTTGG
16532820 TTTTTTTTT
1 TTTTTTTTT
16532829 AACGTCGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTGG
Found at i:16533009 original size:12 final size:12
Alignment explanation
Indices: 16532994--16533049 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
16532984 ATAGGGTGGC
*
16532994 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
16533006 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
16533018 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
*
16533030 TGGTTGGGTAAT
1 TGGTCGGGTAAT
16533042 TGGTCGGG
1 TGGTCGGG
16533050 GCAGTTCGGC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
11 1 0.03
12 31 0.94
13 1 0.03
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.32
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:16533021 original size:24 final size:23
Alignment explanation
Indices: 16532994--16533049 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
16532984 ATAGGGTGGC
16532994 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGG-AGTTGGTAAGGTAAT
**
16533018 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGG-GAGTTGGTAAGGTAAT
16533042 TGGTCGGG
1 TGGTCGGG
16533050 GCAGTTCGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.32
Consensus pattern (23 bp):
TGGTCGGGAGTTGGTAAGGTAAT
Found at i:16533113 original size:4 final size:4
Alignment explanation
Indices: 16533096--16533143 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
16533086 TTATTTCCGT
* *
16533096 TTTG TTTT TTTG TTTG -TTG TTT- TTT- TTTG TTTG TTTT TTTG TTTG
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG
16533141 TTT
1 TTT
16533144 TGTTAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 9 0.24
4 29 0.76
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (4 bp):
TTTG
Found at i:16533113 original size:12 final size:12
Alignment explanation
Indices: 16533095--16533144 Score: 66
Period size: 12 Copynumber: 4.1 Consensus size: 12
16533085 CTTATTTCCG
16533095 TTTTGTTT-TTT
1 TTTTGTTTGTTT
*
16533106 TGTTTGTTGTTTTT
1 T-TTTGTT-TGTTT
16533120 TTTTGTTTGTTT
1 TTTTGTTTGTTT
16533132 TTTTGTTTGTTT
1 TTTTGTTTGTTT
16533144 T
1 T
16533145 GTTAAATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
11 1 0.03
12 23 0.66
13 7 0.20
14 4 0.11
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTGTTTGTTT
Found at i:16533122 original size:17 final size:16
Alignment explanation
Indices: 16533094--16533143 Score: 73
Period size: 17 Copynumber: 3.0 Consensus size: 16
16533084 TCTTATTTCC
16533094 GTTTTGTTTTTTTGTTT
1 GTTTT-TTTTTTTGTTT
16533111 GTTGTTTTTTTTTGTTT
1 GTT-TTTTTTTTTGTTT
*
16533128 GTTTTTTTGTTTGTTT
1 GTTTTTTTTTTTGTTT
16533144 TGTTAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 12 0.39
17 17 0.55
18 2 0.06
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (16 bp):
GTTTTTTTTTTTGTTT
Found at i:16533147 original size:17 final size:16
Alignment explanation
Indices: 16533096--16533143 Score: 75
Period size: 14 Copynumber: 3.2 Consensus size: 16
16533086 TTATTTCCGT
16533096 TTTGTTTTTTTGTTTG
1 TTTGTTTTTTTGTTTG
16533112 -TTG-TTTTTT-TTTG
1 TTTGTTTTTTTGTTTG
16533125 TTTGTTTTTTTGTTTG
1 TTTGTTTTTTTGTTTG
16533141 TTT
1 TTT
16533144 TGTTAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.14
14 9 0.31
15 9 0.31
16 7 0.24
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (16 bp):
TTTGTTTTTTTGTTTG
Found at i:16533385 original size:49 final size:49
Alignment explanation
Indices: 16533319--16533841 Score: 686
Period size: 49 Copynumber: 10.7 Consensus size: 49
16533309 ACAGAAAAGG
* *
16533319 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
16533368 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCT--TTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* * *
16533415 GCTCATCTCAATAGAGGCTCCACAACTTTAAAAATCTCATCTAG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
16533463 GCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
16533511 GCTCCTCTCAACAGAGGCTCCAAAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---GAAAAA
* *
16533563 GCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCTC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGGAAAAA
* * * *
16533613 ACTCCTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
16533662 GCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
* * *
16533711 GCTCCTCTCAACAGAGGCTCGACAACTTTAAAATTCTCATCT-TAGAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGA-AAAA
**
16533760 GCTCCTCTCAACAGAGGCTTAACAACTTTAAAAATTCTCATCT-GAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
16533809 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA
16533842 TTTCTCATTT
Statistics
Matches: 420, Mismatches: 40, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
47 56 0.13
48 75 0.18
49 192 0.46
50 52 0.12
52 32 0.08
53 9 0.02
54 4 0.01
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.25
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
Found at i:16545963 original size:16 final size:16
Alignment explanation
Indices: 16545939--16546001 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
16545929 AGGATTTTTT
*
16545939 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16545955 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
16545972 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
16545987 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16546002 TTAGGGTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16545967 original size:33 final size:33
Alignment explanation
Indices: 16545930--16546003 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
16545920 CGTGTCCTTA
*
16545930 GGATTTTTTAGGACTTTGGATTTCAA-GGATTTT
1 GGATTTTTGAGGACTTTGGATTT-AATGGATTTT
** * **
16545963 GGATTTCGGGGGGTTTTGGATTTAATGGATTTT
1 GGATTTTTGAGGACTTTGGATTTAATGGATTTT
16545996 GGATTTTT
1 GGATTTTT
16546004 AGGGTTTTAG
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.18, C:0.04, G:0.30, T:0.49
Consensus pattern (33 bp):
GGATTTTTGAGGACTTTGGATTTAATGGATTTT
Found at i:16546303 original size:24 final size:24
Alignment explanation
Indices: 16546276--16546322 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16546266 TTTTAAAGCA
16546276 TTTTAATATATTTT-TTATTATTAT
1 TTTTAATA-ATTTTATTATTATTAT
**
16546300 TTTTCTTAATTTTATTATTATTA
1 TTTTAATAATTTTATTATTATTA
16546323 AAACGATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTAATAATTTTATTATTATTAT
Found at i:16549523 original size:26 final size:26
Alignment explanation
Indices: 16549494--16549546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16549484 CCGATCTGAT
*
16549494 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16549520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16549546 C
1 C
16549547 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16552148 original size:26 final size:26
Alignment explanation
Indices: 16552119--16552170 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16552109 CGATCTGATA
*
16552119 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
16552145 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
16552171 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:16552910 original size:889 final size:887
Alignment explanation
Indices: 16547994--16554825 Score: 8689
Period size: 889 Copynumber: 7.8 Consensus size: 887
16547984 AGGCAGGAAA
* *
16547994 ATGCGCAAGCAGTTGGATCGATA-GGTGATA-G-GGGTTTAGGCA-ATCTTCA-ATTTCTGCC-T
1 ATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
16548053 GCCAATG-CA-TTTTCTGGCTTGTAAATT-A-ACAATGGTCCCTT-AGCCTTCATGTGAAGTTTC
65 GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
16548113 ATGGCAAGACGACTCGTTTTCTACTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
** * *
16548178 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACAAGCTAGACATGATCCTTGTATTTTTGTTGGC
195 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
16548243 ATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
260 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
16548308 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG
325 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-
* * *
16548373 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAAGGCTAAGTACCAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
16548438 CATCGCACATCATGTGCGCACACTCCCCCGACCACCCCCGATCGCTGGAACCCCAATGTCGTCGG
454 CATCGCACATCATGTGCGCACAC-CCCCCGACC-CCCCCGATCACCGGAACCCCAATGTCGCCGG
* * * *
16548503 TCAGGTTCTCCGACGATGGTGTCCCGAAGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAG
517 TCAGGTTCTCCGACGATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
16548568 CATGTGCTGCCGCAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
582 CATGTGCTGCCGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** ** * *
16548632 ACTGGGAATGAACTCTGTACACCTAAGTCAACCTTCGAAACGAGCGTACGGGCGCTCAGCCGACC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * ** * *
16548697 AGAGGGGTGGGATACGCAAGCCGGGGATTGGTCGGGTCTCCCTCTACGTGCTGTCGAACCTGCTG
711 AGAGGGGCGGGATGCGCAAGCCGGGGA-TCGCCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTG
* * *
16548762 CCACAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGAC
775 CCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
16548827 GAAACGGGCAGG-TGGGCGGGCGGACACTACGCCGGCTAGAGAGGCGGG
840 GAAAAGAGC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
*
16548875 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCCATG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
16548940 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * *
16549005 TGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* * *** *
16549070 AAATTTTTTCAGAGGGATTTTTCATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * * *
16549135 TGCACAAAAAAATTCAGCTAAAACCTCGAACTGTACAAGATTTTGTGACCAGTTGAAAGAATTGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
16549200 CCCCATTCCAGACAATTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-
* *
16549265 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGTCAAGTACCAGCACCC
390 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
16549330 ATTGCACATCATGTGCGCACACCCCTCCCCGACCACCCCCGATCACCGGAACCCCAATGTCGTCG
455 ATCGCACATCATGTGCGCACA--CC-CCCCGACC-CCCCCGATCACCGGAACCCCAATGTCGCCG
* ** * * *
16549395 GTCAGGTTCTTCGGTGATGGTGTCCCGGA-GAAGAAAAATCCGGCACCAGCACATGCCCGAGCCT
516 GTCAGGTTCTCCGACGATGGTGT-CCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * * *
16549459 AGCATGTGCTACCGTAACACTCTGG-CCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTT
580 AGCATGTGCTGCCGCAACCCTC-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
16549523 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGG
644 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
16549588 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTATGTGCTATCAATCTTGA
709 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-CCGGGTCCCCCTCTGTGTGCTGTCGATCCT-A
* * * * *
16549653 -TGCCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTTAGCCAACC
772 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
16549717 GATGAAATGGGC-GAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGG
837 GATGAAAAGAGCGGA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * *
16549768 ATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * *
16549833 CCAACGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* ** *
16549898 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTGCTTAAGGTTC-AGTATTTTTT
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTT
* * *
16549962 AAAATTTTTTTAGAAGGAGTTTT-GCCCCAAACTCGGTAGACGTGATCTTTGTATTTTTGTTGGC
195 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
16550026 ATGCACAAAAACATTCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
260 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
16550091 TCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAG
325 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
16550156 GTGGTATGAGTTCTCGAGGTTTGATAAGGGATA-GGGGCCAATATATGGGCCAAGTACCAGCACC
390 G-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
16550220 CATCGCACATCATGTGCACACACCCCCCCGGCCACCCCGATCGCCGGAACCCCAATGCCGCAGGT
454 CATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGT
* * * *
16550285 CAGGTTCTCCGACGGATGGTGTCCCGACGAAGAAAAATGCGACGCCAGCACATGCCCGAGCCCAG
518 CAGGTTCTCCGAC-GATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * *
16550350 CATGTGCTGTCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATG-A------A--CTT---
582 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
16550403 -T--G--T--A----G---GCCTAAGTCAGCCCACAAAATGAGCGTGCGGGCGCTCAGCAGGCCA
647 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** * * *
16550454 GAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
712 GAGGGGCGGGATGCGCAAGCCGGGGATC-GCCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGC
* * *
16550519 CACAACCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGATG
776 CACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * *
16550584 AAATGGGCGGGAGGGTGGGTAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGG
841 AAA--------AGAG-CGG-A--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* *
16550643 ATGCACAAGCCGTGG-TCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * * *
16550707 CCAATGCCATTTTTCTGGCTTGCAAATTCAAACAATAGTACCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * * *
16550772 TGGCAAGACGACTCGTTTTTTACTTTTCATGATTTTTGAAACTTTTTACGCTTCGGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
** * * *
16550837 AAATTTTTTCAGAAGGAGTTTTTGGTGCCAAACTTGGTGGACGTGATTCTTGTATTTTTTTTGGC
196 AAATTTTTTCAGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
16550902 AAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAATAAAGTG
260 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
16550967 TCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
325 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-
* * * *
16551032 GGGGTGTGAGTTCTCGAGATTTGATGTGGGATACGGGGCCAATATAAGGGCCAAGTACTAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * * *
16551097 GATTGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCATC-GAACCCTAATATCGTCGGTC
454 CATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTC
* *
16551161 AGGTTCTTC-AGCGATGGTGTCCCGACGAAGAAAAAT-----A-C-G-AC-T--------CCAGC
519 AGGTTCTCCGA-CGATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
16551208 ATGTGCTGCCGTAACCCTCGGTTC-AGTCCGATCTTAGGA-TGGGAATGAACTCTGTATGCTTAG
583 ATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTA-GACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
16551271 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCACTCAGTCGACC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * *
16551336 AGAGGTGAGGGATGCACAAGTCGAGGATCGACCGGGTCCCCCTCTGTGTGC--T-G----T-C-G
711 AGAGGGGCGGGATGCGCAAGCCGGGGATCG-CCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTG
* * * * *
16551392 ---CAAGCCTCGGTCTGGTCCGATCTAAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGAT
775 CCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * *
16551454 GAAACGTGCGGACGGGCGGACGGGCACTACGCCGACCAGAGAGGCGGG
840 GAAAAGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
** * *
16551502 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTGTATTTCTGTCGTG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
16551567 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* *
16551632 CGGCAAGACGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
*
16551697 AAATTTTTTAAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
196 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
16551762 TGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
16551827 CCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-
*
16551892 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
390 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * ** * **
16551957 ATCACACATCATGTGTGCACACCCCCTGGCCCCCCCCGCTCGTCGGAACCTCAATGTTACCGGTC
455 ATCGCACATCATGTGCGCACACCCCC-CGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTC
* *
16552022 AGGTTCTCCGACGATGGTATCCAGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
519 AGGTTCTCCGACGATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* ** * * *
16552087 TGTGCTGGCGCAACAGTAGGTCCGATCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACT
584 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
16552152 GAGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGA
649 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** ** * * ** ** * *
16552217 AGGGCAAGATGTACAAGTCGGGGATCAGCCGTGTCCCCCTAAGTGTGCTACCGATCCTACTACCG
714 GGGGCGGGATGCGCAAGCCGGGGATC-GCCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCCA
* * * * *
16552282 TAACCCTCGGTCTGATTCGATCATAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
778 CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
16552347 AAGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGG
843 AAGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * * *
16552392 ATGCGTAAGTCGGGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTTATATTTCTGCCATG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
16552457 CCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * * *
16552522 TGGCAAGACGACTCGTTTTTTATTTTTTATGATTTTTGAAACATTTTT-CGGTTCGGGATTTTTC
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTT
*
16552586 AAAATTTTTTTC-GAAGGA-TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
195 AAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
16552649 CA-GACACAAAAAAATTAAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCAATTAAAAAAAG
259 CATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
16552713 TGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
323 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-
*
16552778 AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
387 AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
16552843 CCCATCACACATCATGTGCGCACACCCCTCC-ACCCCCTCCGATCATCGGAACCCCAATGTCACC
452 CCCATCGCACATCATGTGCGCACACCCC-CCGACCCCC-CCGATCACCGGAACCCCAATGTCGCC
* * * * *
16552907 GGTCAGGTTCTCCGGCGATGGTGTCTAGACGAAGAAAAATTCAGCACCAGCATATGCCCGAGCCC
515 GGTCAGGTTCTCCGACGATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
16552972 AGCATGTGCTACCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTT
580 AGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
16553036 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTTAGCCGG
644 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* *
16553101 CCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCCTGC
709 CCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GCCGGGTCCCCCTCTGTGTGCTGTCGATCCTAC
*** ** * * * * *
16553166 TGTGGCAACCCTTAGTCTGATCCGATCTTAGACTAGGAATGAACTTCGTAGGCCTAAGCCAACCG
773 TGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * **
16553231 GTGAAACGAGC-GAGCGATCGGGCGGGCACTACGCCGGCCAGA-AGTGCGGG
838 ATGAAAAGAGCGGA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAG-GCGGG
* * * *
16553281 ATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATACTTCTGCCATG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * *
16553346 CCAATGCAATTTTTTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * *
16553411 TGGCAAGACGTCTTGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
*** *
16553475 AAATTTTTTCAGAAGGAGTTTTGGTTGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
16553540 GGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACATGATTTTGTGACCATTTGAAAAAAGTGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
16553605 CCCCATTTTAGACACTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
16553670 GTGTCTGAGTTCTCGAGATTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
391 G-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** *
16553735 ATCGCACATCATGTGCGCACACCCCCCGACCCCCTCGATCACCGGAACCCCAATGCCGTTGATCA
455 ATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCA
* ** * *
16553800 GGTTCTCCGACGATGGTGTCCCA-ACAAAGAAAAATGTGGCACCAGCACATGCCAGAGCCTAGCA
520 GGTTCTCCGACGATGGTGT-CCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
16553864 TATGCTGTCGCAACCCTCAGTCCCG-TCCGATCTTAGACTGGGTATGAACTCCGTATGCTTAGAT
584 TGTGCTGCCGCAACCCTCGGT-CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
** * * *
16553928 TCAGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAG
648 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
16553993 AGGGGCGGGATACGCAAGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCAATCCTACTGCC
713 AGGGGCGGGATGCGCAAGCCGGGGATCG-CCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCC
* * * *
16554058 ACAACCCAT-GATAC--GATCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACTGA
777 ACAACCC-TCGGT-CTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * * * *
16554120 -CAAAACAAGCGGGTGGACGGGCGGGCACTATGCCGACCAAAGAGGCGAG
839 TGAAAA-GAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * * *
16554169 ATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGAGTTTGGGCACATCCTCATCTTTCTGCCATG
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
16554234 CCAATGCCATTTTTTTGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * *
16554299 TGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTAAAAATTTTTACGGTTC-AGGATTTTTT
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTT
* * * * *
16554363 AAAATTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGGAGACATGATCCTTGTATTTTTTTTAGC
195 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
16554428 ATGCACAAAAAAATTAAGCTAACAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTG
260 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
16554493 CCCCCATTTCTGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
325 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-
**
16554558 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCTGAGTACCAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
16554622 CATCGCACATCATTTGCGCACA----CC-AGCCCCCC-AGC-CC---CCCCCGATGTCGCCAGTC
454 CATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTC
* * *
16554677 AGGTTCACCGACGATGGTGTCCCA-ATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGC
519 AGGTTCTCCGACGATGGTGT-CCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * * *
16554741 ATGTACTGTCGTAACCCTCGGTCTGGT-CGAATTTTAGACTGGGAATGAACTTCGTAAGCTTAGA
583 ATGTGCTGCCGCAACCCTCGGTCCGATCCG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
*
16554805 CTGGGAATGAACTCCATATGC
647 CTGGGAATGAACTCCGTATGC
16554826 TTAGACTGGG
Statistics
Matches: 5186, Mismatches: 622, Indels: 289
0.85 0.10 0.05
Matches are distributed among these distances:
856 1 0.00
857 41 0.01
858 4 0.00
859 289 0.06
860 195 0.04
861 45 0.01
862 3 0.00
863 157 0.03
864 2 0.00
865 1 0.00
866 7 0.00
867 2 0.00
868 2 0.00
869 2 0.00
870 3 0.00
871 61 0.01
872 2 0.00
873 1 0.00
874 206 0.04
875 78 0.02
876 202 0.04
877 55 0.01
878 281 0.05
879 2 0.00
880 15 0.00
881 21 0.00
882 5 0.00
883 92 0.02
884 9 0.00
885 10 0.00
886 9 0.00
887 19 0.00
888 618 0.12
889 1307 0.25
890 301 0.06
891 396 0.08
892 188 0.04
893 548 0.11
894 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAG
GTTCTCCGACGATGGTGTCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGCCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCCACAA
CCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAG
AGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
Found at i:16553043 original size:26 final size:26
Alignment explanation
Indices: 16553007--16553059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16552997 CCAGTCCGAT
*
16553007 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16553033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16553059 C
1 C
16553060 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16554810 original size:26 final size:26
Alignment explanation
Indices: 16554774--16554844 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
16554764 TGGTCGAATT
* *
16554774 TTAGACTGGGAATGAACTTCGTAAGC
1 TTAGACTGGGAATGAACTCCATAAGC
*
16554800 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATAAGC
16554826 TTAGACTGGGAATGAACTC
1 TTAGACTGGGAATGAACTC
16554845 TGTATGCCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATAAGC
Found at i:16555588 original size:26 final size:26
Alignment explanation
Indices: 16555550--16555602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16555540 CTGGTCCAAT
*
16555550 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16555576 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16555602 C
1 C
16555603 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16556463 original size:26 final size:26
Alignment explanation
Indices: 16556434--16556486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16556424 CCACTCTGAT
16556434 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
16556460 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16556486 C
1 C
16556487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16556823 original size:864 final size:862
Alignment explanation
Indices: 16554926--16557919 Score: 3615
Period size: 864 Copynumber: 3.4 Consensus size: 862
16554916 GAAAGCCGAC
* * *
16554926 CAGAGAGGCAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
16554991 ATTTCTACCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 ATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
* * *
16555056 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATT
131 TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * * * * *
16555121 CGGGATTTTTTAAACTTTTTTCAAAAAGAGTTTT-GCCCCTAGCTTGGTAGACGTGATCCTTGTA
196 TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
16555185 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
16555250 TGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTATTGCCAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
16555315 TGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCTAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC-AA
*
16555379 GTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCAGCCCCCCCGATCGCCGGAACCCCAA
455 GTACCAGCACCCATCGCACATCATGTGCGC--A-----CA-CCCCCCCGATCACCGGAACCCCAA
* ** * **
16555444 TGTTGCCGATCAGGTTCTCCGGCGAT-GTGTCCCTTCAAAGAAAAATACGGCACCAGCACATGCC
512 TGCTGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
* * * * ** *
16555508 CAAGCCTAGCATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
577 CGAGCCCAGCATGTGCTGCC-GAACCATCGGTC-CCT-CGATCTTAGA-TGGGAATGAACTCCGT
* * *
16555573 ATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAATGAGCGTACGGGCGCT
638 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAA-GAGCGTGCGGGCGCT
* ** * *
16555637 CAGTCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCA
702 CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC-GGTCCCCCTCT-CCTGCTACCG
* * *
16555702 ATCCATCTGCCGCAACCCTCCA-TTCGGTCC-AATCTTAGACTGGGAATGAACTAC-GTATGCCT
765 AT-C--CT---GCAA-CCT-CAGTTCGG-CCTGATCTTAGACTGGAAATGAACT-CTGAATGCCT
* * **
16555764 AAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGTCAGGAACTACGCCGGT
820 AAGCCAACCGAC-AAAAGAGCGAACGGGC--G-GG-C----ACTACGCCGGT
* * *
16555816 CAGAGAGGTGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTGAT
1 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
16555881 ATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCGTACATTGGTCCCTTAAGCCTTCA
66 ATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
* *
16555946 TGTGAAGTTTCATGGCAAGATGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
131 TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * * **
16556011 AGGGATTTTTTAAAATCTTTTCAGACGGAGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTA
196 TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
16556076 TTTTTGTTGGCATGCTAAAAAAAAATT-AGCTAAAAACTCGTAGTGTACAAGATTTTGAGACCAT
261 TTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * ** * *
16556140 TTAAAAAAAATGTTTCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
16556205 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTATGAGAGATAGGGGGCCAATATAAGGGTCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CA
16556270 AGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCCGATCACCGGAACCCCAATGCTGCC
454 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCACCGGAACCCCAATGCTGCC
*
16556334 GATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
519 GATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *
16556399 AGTATGTGCTGTCGTAACCATCGGTCCACTCTGATCTTAGAATGGGAATGAACTCCGTATGCTTA
584 AGCATGTGCTGCCG-AACCATCGGTCC-CTC-GATCTTAG-ATGGGAATGAACTCCGTATGCTTA
* * * * *
16556464 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAGTCTGC
645 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGTCGGC
* * * *
16556529 CAGTGGGGCGGGATGCGCATGCCGGGGATCGATCGGATCCCCCTCTCCATGCTACCGATCCTGCT
710 CAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGG-TCCCCCTCTCC-TGCTACCGATCCTGCA
* * * *
16556594 A-CTCAGTTTGGCCTGATCTTAGACTGAAAATGAACTCTGAATGCCTAAGCGAACCGA-TAAA-A
773 ACCTCAGTTCGGCCTGATCTTAGACTGGAAATGAACTCTGAATGCCTAAGCCAACCGACAAAAGA
* * *
16556656 -CGAACGGGCGGGCATTATGCC-AT
838 GCGAACGGGCGGGCACTACGCCGGT
* * *
16556679 CTAGATAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCA
1 C-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* ** *
16556744 TATTTCTGCTGTGCCAATGCCATTTTTCTAGCTTTTAAATTCATACAATGCTCCCTTAAGCCTTC
65 TATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTC
*
16556809 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
130 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
16556874 TTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
195 TTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
16556939 ATTTTTATTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
16557004 TTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
16557069 ATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTG--AATATAAGGGCC
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-GCCAATATAAGGG-C
*
16557132 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCCTCGGAACCC
453 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA-----TC-A--C-CGGAACCC
* * ** *
16557197 CAATGCCGCCCG-TCAGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAAAGTGGCACCAGCACA
509 CAATGCTG-CCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACA
* * * *
16557261 TGCCCGAGCCCAGCATGTGCTGGCG---CA----ACCCTCG------G-TCGG---G---TCC-A
573 TGCCCGAGCCCAGCATGTGCTGCCGAACCATCGGTCCCTCGATCTTAGATGGGAATGAACTCCGT
* * ** * *
16557305 AT-CTTAGACTGGGAATGAACT-TCGAATGCCTAAGCCAACAGACGAAAAGAACGGGCGGGCGCT
638 ATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCT
**
16557368 CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCTG
702 CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC-GGTCCCCCTCT-C---CTGCT-
* * * *
16557433 ATCCTGATGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACT-TCGAATGCCTAA
761 A-CC-GATCCTGCAA-CCTCAGTTCGGCCTGATCTTAGACTGGAAATGAACTCT-GAATGCCTAA
16557497 GCCAACCGACGAAAAGAGCGAGCGGGTAGGCGGGCGGGCGGGCGGGCACTACGCCGGT
822 GCCAACCGAC-AAAAGAGCGA------A----------CGGGCGGGCACTACGCCGGT
* * * * *
16557555 CAGAGAGGCGGGATGCGTAAACCGTGGATCGATAAGGTGGTAGTTGGGTTTAGGCACATCTTTAT
1 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** *
16557620 ATTTC-AGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTC
66 ATTTCTA-CCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTC
* *
16557684 ATGTGAAGTTTCATGGCAAGATGACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGT
130 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
** *
16557749 TTGGGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
195 TTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
16557814 ATTTTTTTTGGTATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
16557879 TTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACT
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
16557920 TTAATGCGCA
Statistics
Matches: 1852, Mismatches: 189, Indels: 141
0.85 0.09 0.06
Matches are distributed among these distances:
846 1 0.00
847 94 0.05
848 5 0.00
849 3 0.00
850 4 0.00
851 2 0.00
852 3 0.00
853 8 0.00
854 1 0.00
855 51 0.03
857 4 0.00
858 1 0.00
859 3 0.00
863 56 0.03
864 410 0.22
865 4 0.00
868 1 0.00
869 5 0.00
870 2 0.00
872 8 0.00
873 86 0.05
874 5 0.00
875 360 0.19
876 43 0.02
878 3 0.00
881 2 0.00
883 52 0.03
884 190 0.10
885 4 0.00
890 211 0.11
891 142 0.08
892 87 0.05
893 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (862 bp):
CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCACCGGAACCCCAATGCTGCCGA
TCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGAACCATCGGTCCCTCGATCTTAGATGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
GGCGGGATGCGCAAGCCAGGGATCGATCGGTCCCCCTCTCCTGCTACCGATCCTGCAACCTCAGT
TCGGCCTGATCTTAGACTGGAAATGAACTCTGAATGCCTAAGCCAACCGACAAAAGAGCGAACGG
GCGGGCACTACGCCGGT
Found at i:16562231 original size:26 final size:26
Alignment explanation
Indices: 16562202--16562254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16562192 CCGATCCGAT
*
16562202 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16562228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16562254 C
1 C
16562255 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16563120 original size:26 final size:26
Alignment explanation
Indices: 16563091--16563140 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16563081 CCGATCCGAT
*
16563091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16563117 CTTAGAATGGGAATGAACTCCGTA
1 CTTAGAATGGGAATGAACTCCGTA
16563141 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16563172 original size:889 final size:887
Alignment explanation
Indices: 16560456--16563494 Score: 4309
Period size: 888 Copynumber: 3.4 Consensus size: 887
16560446 CTGAATCTCG
* * * **
16560456 GACTGGGAAGTGAACTTCGTATGCTTAAGTCAACCCACG-AATGAGCGTGCGGGCGCTCAGTCGG
1 GACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * **
16560520 CCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCC-CCTTCTGCGTGCTGTCGATCCTA
65 CCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCTCC-TCTGCGTGCTACCGATCCTA
* ** * *
16560584 CTGCCGCAACCCTCAGTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACC
129 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** *
16560649 GACGAAACGAGCAGGCGGGCGGGCGGGCACTGTGCCGGCCAGAGAGGCGGGTTGCGCAAGCCGTG
194 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* **** * *
16560714 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTTGGGCCAATGCAATTTTT
259 GATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTT
* * * * * * *
16560779 TTTGCTTGCAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAATATGACTC
324 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * *
16560844 ATTTTCTATTTTTCAAGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTAAGATTTTTTCAGA
389 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GA-TTTTTTAAAATTTTTTCAGA
* * * *
16560909 TGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAAG
452 AGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAT
* * *
16560974 TCACCTAAAAACGC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGA
517 TCAGCTAAAAACTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
16561038 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTT
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTA
*
16561103 TCA-AGGTTTGAT-AGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 T-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
16561166 TATGCGCACTCCCCCCCGGACCCCCCGATC-GCCGGAACCCCAATGCCACCGGTCACGTTCTCCG
710 TGTGTGCACACCCCCCC-GACCCCCC--TCGGTCGGAACCCCAATGCCACCGGTCACGTTCTCCG
* * * *
16561230 ACGATGGTGTCTTGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCTAGCATGTGCTACCA
772 ACGATGGTGTCTCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC-
* *
16561295 G-AACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGCTTA
836 GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * *
16561346 GACTGGGAATGAACTCC--AAGCCTAAGTTAACCCATGAAACAAGTGTGCGGGTGCTCAACCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* ** * * *
16561409 CATAGGGGCGGGATGCGCAAGCCCGGGATC-GACAGGGT-CTCCCTCTGCATGCTACCGATCCTG
66 CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTC-GGGTCCT-CCTCTGCGTGCTACCGATCCTA
* * *
16561472 CTGCTGCAACCCTCGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
129 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
16561537 GACGAAATGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
194 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* *
16561602 GATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTT
259 GATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTT
* * *
16561667 CTGGCCTGTGAATTCATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCATGGCAAGACGACTC
324 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
16561732 GATTTT-TATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTATAAAAATTTTTCCAGA
389 G-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-GTTCGGATTTTTTAAAATTTTTTCAGA
* * * * *
16561796 AGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTAGGCACGCACAAAACAAT
452 AGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAT
*
16561861 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
16561926 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTAT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTAT
* *
16561991 CGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
647 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
16562056 TGTGCACA-CCCCCCG-GCTCCCTCGATCGTCGAAACCCCAATGCCACCGGTCACGTTCTTCGAC
712 TGTGCACACCCCCCCGACCCCCCTCG---GTCGGAACCCCAATGCCACCGGTCACGTTCTCCGAC
* *
16562119 GATGGTGTCTCGACGAAGAAAAATAC-GAACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCA
774 GATGGTGTCTCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCA
*
16562183 ACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
839 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
16562232 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* * *
16562297 TATAGGGGCGGGATGCGTAAGCCAAGGATCGGTCGGGTCCTCCTCTGCGTGCTACCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCTCCTCTGCGTGCTACCGATCCTACT
* * * *
16562362 GCTGCAATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
16562427 CGAAACGAGCGGGTGGGCGGGTGGGCACTACGCCGGCCAGACAGGCAGGATGCGCAAGCCGTGGA
196 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
16562492 TCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
261 TCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCT
*
16562557 GGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
16562622 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCAGAAA
391 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAA-TTTTTTCAGAAG
* * * *
16562687 GAGTTTTGGCCCCGAACATGGTAGACATGATCTTTGTATTTTTGTTGGCATGCATAAAAAAATTC
454 GAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTC
*
16562752 AGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
16562817 TTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTAG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATAG
*
16562882 AGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
16562947 TGCACACCCCCCCGACCCCCCCCGGTCGGAACCCTATTGCCGA-CGGTCAGGTTCTCCGACGATG
714 TGCACACCCCCCCGACCCCCCTCGGTCGGAACCCCAATGCC-ACCGGTCACGTTCTCCGACGATG
* ** *
16563011 GTGTCCCGGTGAAGAAAAATACGGCACCAGCACATGC-CTGAGCCCAGCAAGTGCTGCCGCAACC
778 GTGTCTCGACGAAGAAAAATACGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAACC
*
16563075 CTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
842 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * **
16563121 GAATGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* * * * * * ** * *
16563186 CAGAGGGGCGGGATGTGCAAGCCAGGGTTCGATTGGGTCCCCCTCTTTGTGCTGCC-ATTCCTGC
66 CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCTCCTCTGCGTGCTACCGA-TCCTAC
* * *
16563250 TGCCGCAACCCTCGGTCCAGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
130 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
** * * *
16563315 ACGAAACGAGCGGATGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGAT-TGCAAGCCATGG
195 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
16563379 ATCGATAGGGTGGTAGGTATGTTTAGGCACATTTTCATATTTCTGCCATGCCAATACCATTTTTC
260 ATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTC
*
16563444 TGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
16563495 TGAAGTTTCA
Statistics
Matches: 1918, Mismatches: 204, Indels: 57
0.88 0.09 0.03
Matches are distributed among these distances:
883 2 0.00
885 5 0.00
886 95 0.05
887 309 0.16
888 912 0.48
889 573 0.30
890 16 0.01
891 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCTCCTCTGCGTGCTACCGATCCTACT
GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAG
CTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATAGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
CACACCCCCCCGACCCCCCTCGGTCGGAACCCCAATGCCACCGGTCACGTTCTCCGACGATGGTG
TCTCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:16563497 original size:12 final size:12
Alignment explanation
Indices: 16563477--16563506 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16563467 TCCCTTAAGC
*
16563477 TTCACGTGAAGT
1 TTCATGTGAAGT
16563489 TTCATGTGAAGT
1 TTCATGTGAAGT
16563501 TTCATG
1 TTCATG
16563507 GCAAGACCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (12 bp):
TTCATGTGAAGT
Found at i:16563681 original size:26 final size:26
Alignment explanation
Indices: 16563645--16563696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563635 GGGTCCAATG
16563645 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
16563671 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
16563697 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:16566325 original size:27 final size:26
Alignment explanation
Indices: 16566282--16566335 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
16566272 CCAGTCTGAT
*
16566282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16566308 CTTAGACTAAGGAATGAACTCTGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
16566335 C
1 C
16566336 CTAAGTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16569811 original size:26 final size:26
Alignment explanation
Indices: 16569775--16569827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569765 CTGGTCTGAT
*
16569775 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16569801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16569827 C
1 C
16569828 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16570274 original size:881 final size:882
Alignment explanation
Indices: 16568912--16571570 Score: 3917
Period size: 881 Copynumber: 3.0 Consensus size: 882
16568902 CCGATCTGAT
* * * *
16568912 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * * *
16568977 CGGCCATAGGGCCGGGATACACAAGCCAGGGATCGACCGGGTCCCCCTTTATGTGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * * *
16569042 TGCTACCACAACTCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A
131 TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * *
16569106 CCGACGAAACGAGCGGGCGGGCAGACAGGCACTACGCCGGCCAAAGAGGCAGGATGCGCAAGTCG
196 CCGACGAAACGA---GGCGGGC-G---GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
16569171 TGGATCGTTAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
254 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCA-TT
* *
16569236 TTTCTAGTTTGTAAATTCATACAA-GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
318 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
16569300 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
383 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* **
16569365 GAAGAATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATTAAAAA
448 GAA-AAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
16569430 ATTCAGCTAAAAACTCGAAGTGTACAAG-TTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAG
512 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16569494 ACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
16569559 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCACCGCACATCA
642 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
16569624 TCTGCGCACATCCCCCTCAGCCCCCCCGATTGCAGGAACCCTAATGCCGCCAGTCAGGTTCTCCG
707 TGTGCGCACATCCCCCTCGGCCCCCCCGATCGC-GGAACCCTAATGCCGCCAGTCAGGTTCTCCG
* * * ** *
16569689 ACGATGGTGTCCCAACAAAGAAAAATGCAACACCAGCACATTCCCGAGCCCAGCATGTGCTGCCA
771 ACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCG
* *
16569754 CAACCTTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
836 CAACCTTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
* * * *
16569801 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAATGAGCGTGTGGGTGCCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
16569866 CGGCTAGAGGGGTGGGATGCACAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGTGGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
*
16569931 TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTTCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
*
16569996 CCGACGAAACGA-GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
196 CCGACGAAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
*
16570060 ATAGGGTGGTAGG-GGGTTTAGGCACATCTTCATATTTTTGCCCTGCCAATGCCATTTTTCTGGC
261 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCATTTTTCTGGC
*
16570124 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTT
326 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
16570189 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAACAGT
391 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAA-AGT
* *
16570254 TTTGGCTCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
455 TTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
16570319 AAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
520 AAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
16570384 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTTAGTTCTCGAGGT
585 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
16570449 TTGATGAGGGATACGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGCA
650 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
16570514 CA-CCCCCTCGGCCCCTCCGATCGGCGGAACCCCAATGCCGTC-GATCAGGTTCTCCGACGATGG
715 CATCCCCCTCGGCCCCCCCGATC-GCGGAACCCTAATGCCGCCAG-TCAGGTTCTCCGACGATGG
* * * * *
16570577 TGTCCCGATGAAGAAAAATACGGCACCAGCAAATGT-CCGAGCCTAGCATGTGCTGCTGCAACCC
778 TGTCCCGACGAAGAAAAATACGGCACCAGCACAT-TCCCGAGCCCAGCATGTGCTGCCGCAACCT
* *
16570641 TCGGTCTGGTCCAATCTTAGACTT-AGAATGAACTCCGTATG
842 TCGGTCTGGTCCGATCTTAGA-TTGGGAATGAACTCCGTATG
*
16570682 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * * **
16570747 CAACCAGAGGGGTGGGATACGCAAGCCGGGGATCCG-TCGGGTCCACCTCTGTGTGCTACAAATC
66 CGGCCAGAGGGGTGGGATACACAAGCCGGGGAT-CGACCGGGTCCCCCTCTGTGTGCTGCCGATC
* * * * **
16570811 CTACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTAAGAATGAAC-TCTGTATGCCTAAGCC
130 CTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCC
* * *
16570875 AACCGATGAAACGAGCGGACGGGTGGACGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAGGC
194 AACCGACGAAACGA--GG-C--G-GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
16570940 CGTGGATC-ATTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCA
252 CGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCA
* *
16571004 TTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
316 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
16571069 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTGGGGATTTTTTAAAATTTTTT
381 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
16571134 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTAGGCATGCACAAAA
446 CAGAA-AAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
16571199 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCTCCATTTC
510 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTC
*
16571264 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
16571329 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
640 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
16571394 CATGTGCACACATCCCCC-CGGCCCCCCCGATCGCTGGAACCTTAATGCCGCCAGTCAGGTTCTC
705 CATGTGCGCACATCCCCCTCGGCCCCCCCGATCGC-GGAACCCTAATGCCGCCAGTCAGGTTCTC
* *
16571458 CGGCGATGGTG-CCCGGCGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGC
769 CGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGC
** * *
16571522 CGCAACCCTT-GGTCCAGTCCGATCTTAGACTGGGAAGGAACTCCGTATG
834 CGCAA-CCTTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
16571571 TCGTAACGGT
Statistics
Matches: 1594, Mismatches: 149, Indels: 54
0.89 0.08 0.03
Matches are distributed among these distances:
880 28 0.02
881 534 0.34
882 223 0.14
884 1 0.00
885 2 0.00
886 6 0.00
887 1 0.00
888 5 0.00
889 306 0.19
890 482 0.30
891 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGACGAAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCATTTTTCTGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAAGTT
TTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ATCCCCCTCGGCCCCCCCGATCGCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGGTGT
CCCGACGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGG
TCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
Found at i:16570695 original size:26 final size:26
Alignment explanation
Indices: 16570656--16570708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16570646 CTGGTCCAAT
*
16570656 CTTAGACTTAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16570682 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16570708 C
1 C
16570709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16572573 original size:16 final size:16
Alignment explanation
Indices: 16572549--16572611 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
16572539 GGAATTTTTT
*
16572549 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16572565 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
16572582 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
16572597 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16572612 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16572619 original size:33 final size:33
Alignment explanation
Indices: 16572554--16572622 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
16572544 TTTTTAGGAC
*
16572554 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
16572587 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
16572620 TTT
1 TTT
16572623 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:16573155 original size:38 final size:38
Alignment explanation
Indices: 16573106--16573198 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 38
16573096 CGCTAGTCTA
* *
16573106 GGCGGTCTGACCGGTTCGACGATTGGATCGGCGGTTCG
1 GGCGATCTGACCGGTTCGACGATCGGATCGGCGGTTCG
* * *
16573144 GGCGATCTGACCGGTTCGGCGGTCGGATCGGTGGTTCG
1 GGCGATCTGACCGGTTCGACGATCGGATCGGCGGTTCG
* * *
16573182 AGCAATCTGATCGGTTC
1 GGCGATCTGACCGGTTC
16573199 AATCCAGTCC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.12, C:0.24, G:0.40, T:0.25
Consensus pattern (38 bp):
GGCGATCTGACCGGTTCGACGATCGGATCGGCGGTTCG
Found at i:16573814 original size:23 final size:21
Alignment explanation
Indices: 16573768--16573822 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 21
16573758 GGACTGTGTA
*
16573768 TTTTTTTATTTTTGTTTCTAT
1 TTTTTTTTTTTTTGTTTCTAT
**
16573789 TTTGGTTTTTTTTTTGTTT-TGG
1 TTT--TTTTTTTTTTGTTTCTAT
16573811 TTTTTTTTTTTT
1 TTTTTTTTTTTT
16573823 GCGTCGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 9 0.31
21 3 0.10
22 4 0.14
23 13 0.45
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.84
Consensus pattern (21 bp):
TTTTTTTTTTTTTGTTTCTAT
Found at i:16573821 original size:18 final size:17
Alignment explanation
Indices: 16573788--16573820 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16573778 TTTGTTTCTA
16573788 TTTTGGTTTTTTTTTTG
1 TTTTGGTTTTTTTTTTG
16573805 TTTTGGTTTTTTTTTT
1 TTTTGGTTTTTTTTTT
16573821 TTGCGTCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (17 bp):
TTTTGGTTTTTTTTTTG
Found at i:16574002 original size:12 final size:12
Alignment explanation
Indices: 16573987--16574066 Score: 65
Period size: 12 Copynumber: 6.7 Consensus size: 12
16573977 ATAGGGTGGC
*
16573987 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
16573999 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
16574011 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
*
16574023 TGGTTGGGTAAT
1 TGGTCGGGTAAT
*
16574035 TGGTCAGGG-AGT
1 TGGTC-GGGTAAT
*
16574047 TGGTTGGGTAAT
1 TGGTCGGGTAAT
16574059 TGGTCGGG
1 TGGTCGGG
16574067 GCAGTTCGGT
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
11 4 0.08
12 43 0.84
13 4 0.08
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.33
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:16574014 original size:24 final size:23
Alignment explanation
Indices: 16573987--16574066 Score: 115
Period size: 24 Copynumber: 3.3 Consensus size: 23
16573977 ATAGGGTGGC
**
16573987 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGG-AGTTGGTTGGGTAAT
16574011 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGG-GAGTTGGTTGGGTAAT
16574035 TGGTCAGGGAGTTGGTTGGGTAAT
1 TGGTC-GGGAGTTGGTTGGGTAAT
16574059 TGGTCGGG
1 TGGTCGGG
16574067 GCAGTTCGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 3 0.06
24 46 0.88
25 3 0.06
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.33
Consensus pattern (23 bp):
TGGTCGGGAGTTGGTTGGGTAAT
Found at i:16574125 original size:8 final size:8
Alignment explanation
Indices: 16574112--16574151 Score: 62
Period size: 8 Copynumber: 4.9 Consensus size: 8
16574102 CTTATTTCCA
16574112 TTTTGTTT
1 TTTTGTTT
16574120 TTTTGTTT
1 TTTTGTTT
*
16574128 GTTTGTTT
1 TTTTGTTT
16574136 TTTTGTTT
1 TTTTGTTT
16574144 GTTTTGTT
1 -TTTTGTT
16574152 AAATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.82
Consensus pattern (8 bp):
TTTTGTTT
Found at i:16574130 original size:4 final size:4
Alignment explanation
Indices: 16574113--16574147 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
16574103 TTATTTCCAT
* *
16574113 TTTG TTTT TTTG TTTG TTTG TTTT TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
16574148 TGTTAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (4 bp):
TTTG
Found at i:16574130 original size:12 final size:12
Alignment explanation
Indices: 16574112--16574148 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
16574102 CTTATTTCCA
16574112 TTTTGTTT-TTT
1 TTTTGTTTGTTT
16574123 TGTTTGTTTGTTT
1 T-TTTGTTTGTTT
16574136 TTTTGTTTGTTT
1 TTTTGTTTGTTT
16574148 T
1 T
16574149 GTTAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 1 0.04
12 19 0.79
13 4 0.17
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTGTTTGTTT
Found at i:16574134 original size:16 final size:16
Alignment explanation
Indices: 16574113--16574147 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
16574103 TTATTTCCAT
16574113 TTTGTTTTTTTGTTTG
1 TTTGTTTTTTTGTTTG
16574129 TTTGTTTTTTTGTTTG
1 TTTGTTTTTTTGTTTG
16574145 TTT
1 TTT
16574148 TGTTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (16 bp):
TTTGTTTTTTTGTTTG
Found at i:16574389 original size:49 final size:49
Alignment explanation
Indices: 16574323--16574746 Score: 529
Period size: 49 Copynumber: 8.7 Consensus size: 49
16574313 ACAGAAAAGG
* * *
16574323 GCTCCTCTTAACAGAGGCTCAACTACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* * *
16574372 GCTCTTTTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-TGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
16574419 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGG-AAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* *
16574467 GCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* * *
16574515 ACTCCTCTCTACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---GAAAAA
* * *
16574567 GCTCCTCTCAGCAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGGAAAAA
* * * * *
16574617 ACTACTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTGGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
* * *
16574666 GCTCCTCTCAATAGAGGCTCCATAACTTTAAAAATTCTC-TCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGGAAAAA
*
16574715 GCTCCTCTCAACAGAGGCTCAACAACTTTAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAA
16574747 CTTCTCATGG
Statistics
Matches: 327, Mismatches: 37, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
47 57 0.17
48 73 0.22
49 113 0.35
50 41 0.13
52 30 0.09
53 9 0.03
54 4 0.01
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAA
Found at i:16574514 original size:96 final size:98
Alignment explanation
Indices: 16574323--16574746 Score: 549
Period size: 96 Copynumber: 4.3 Consensus size: 98
16574313 ACAGAAAAGG
* * * * *
16574323 GCTCCTCTTAACAGAGGCTCAACTACTTTAAAAATCTCATCTGGAAAAAGCTCTTTTCAACAGAG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCAACAGAG
16574388 GCTCCACAACTTTAAAAA-TCTCT-TGAAAAAA
66 GCTCCACAACTTTAAAAATTCTCTCTGAAAAAA
*
16574419 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGG-AAAAGCTCCTCTCAGCAGAG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCAACAGAG
*
16574483 GCTCAACAACTTT-AAAA-TCTCATCTGGAAAAAA
66 GCTCCACAACTTTAAAAATTCTC-TCT-GAAAAAA
* * *
16574516 -CTCCTCTCTACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAAGCTCCTCTCAGC
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---GAAAAAGCTCCTCTCAAC
*
16574579 AGAGGCTCCATAACTTTAAAAATTCTCTCTTGAAAAAA
62 AGAGGCTCCACAACTTTAAAAATTCTCTC-TGAAAAAA
* * * * * *
16574617 ACTACTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCAATAGAG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCAACAGAG
*
16574682 GCTCCATAACTTTAAAAATTCTCTCTTG-AAAAA
66 GCTCCACAACTTTAAAAATTCTCTC-TGAAAAAA
*
16574715 GCTCCTCTCAACAGAGGCTCAACAACTTTAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAA
16574747 CTTCTCATGG
Statistics
Matches: 290, Mismatches: 25, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
94 8 0.03
95 41 0.14
96 71 0.24
97 7 0.02
98 31 0.11
99 47 0.16
100 31 0.11
101 13 0.04
102 30 0.10
103 11 0.04
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (98 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCAACAGAG
GCTCCACAACTTTAAAAATTCTCTCTGAAAAAA
Found at i:16586738 original size:16 final size:16
Alignment explanation
Indices: 16586714--16586776 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
16586704 GGATTTTTTT
*
16586714 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16586730 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
16586747 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
16586762 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16586777 TTAGGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16586784 original size:33 final size:33
Alignment explanation
Indices: 16586719--16586787 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
16586709 TTTTTAGGAC
*
16586719 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
**
16586752 TTTGGATTT-AATGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATTTTGGATTTCGAGGGGT
16586785 TTT
1 TTT
16586788 AGAATCCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (33 bp):
TTTGGATTTCAAGGATTTTGGATTTCGAGGGGT
Found at i:16587555 original size:17 final size:18
Alignment explanation
Indices: 16587528--16587561 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
16587518 TTTTTTTAAT
16587528 CTTTCAAAAAAAAAATAG
1 CTTTCAAAAAAAAAATAG
16587546 CTTT-AAAAAAAAAATA
1 CTTTCAAAAAAAAAATA
16587562 ACGTTGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.65, C:0.09, G:0.03, T:0.24
Consensus pattern (18 bp):
CTTTCAAAAAAAAAATAG
Found at i:16587868 original size:22 final size:21
Alignment explanation
Indices: 16587824--16587876 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
16587814 GGACTTTGTA
*
16587824 TTTTTTTATTTTTGTTTCTGT
1 TTTTTTTTTTTTTGTTTCTGT
*
16587845 TTTGTTTTTTTTTTGTTT-TGG
1 TTT-TTTTTTTTTTGTTTCTGT
16587866 TTTTTTTTTTT
1 TTTTTTTTTTT
16587877 GCGTCGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 8 0.28
21 8 0.28
22 13 0.45
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTTTTTGTTTCTGT
Found at i:16587870 original size:16 final size:16
Alignment explanation
Indices: 16587832--16587874 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
16587822 TATTTTTTTA
*
16587832 TTTTTGTTTCTGTTTTGT
1 TTTTT-TTT-TGTTTTGG
16587850 TTTTTTTTTGTTTTGG
1 TTTTTTTTTGTTTTGG
16587866 TTTTTTTTT
1 TTTTTTTTT
16587875 TTGCGTCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 16 0.67
17 3 0.12
18 5 0.21
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (16 bp):
TTTTTTTTTGTTTTGG
Found at i:16588121 original size:24 final size:24
Alignment explanation
Indices: 16588041--16588126 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
16588031 ATAGGGTGGC
* * **
16588041 TGGTCAGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
*
16588065 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
16588089 TGGTCGGGGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTTGGGTAAT
16588113 TGGTCGGGGCAGTT
1 TGGTCGGGG-AGTT
16588127 CGACGTCGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
24 51 0.93
25 4 0.07
ACGTcount: A:0.16, C:0.06, G:0.45, T:0.33
Consensus pattern (24 bp):
TGGTCGGGGAGTTGGTTGGGTAAT
Found at i:16588182 original size:12 final size:12
Alignment explanation
Indices: 16588165--16588216 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
16588155 TCTTATTTTC
*
16588165 GTTTTGTTTTTTT
1 GTTTT-TTTGTTT
*
16588178 G-TTTGTTGTTT
1 GTTTTTTTGTTT
16588189 -TTTTTTTGTTT
1 GTTTTTTTGTTT
16588200 GTTTTTTTGTTT
1 GTTTTTTTGTTT
16588212 GTTTT
1 GTTTT
16588217 CTTAAATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 14 0.41
12 19 0.56
13 1 0.03
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (12 bp):
GTTTTTTTGTTT
Found at i:16588184 original size:4 final size:4
Alignment explanation
Indices: 16588167--16588215 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
16588157 TTATTTTCGT
* * *
16588167 TTTG TTTT TTTG TTTG -TTG TTT- TTTT TTTG TTTG TTTT TTTG TTTG
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG
16588213 TTT
1 TTT
16588216 TCTTAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
3 6 0.16
4 32 0.84
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (4 bp):
TTTG
Found at i:16588194 original size:18 final size:17
Alignment explanation
Indices: 16588165--16588207 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 17
16588155 TCTTATTTTC
*
16588165 GTTTTGTTTTTTTGTTT
1 GTTTTTTTTTTTTGTTT
16588182 GTTGTTTTTTTTTTGTTT
1 GTT-TTTTTTTTTTGTTT
16588200 GTTTTTTT
1 GTTTTTTT
16588208 GTTTGTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (17 bp):
GTTTTTTTTTTTTGTTT
Found at i:16589197 original size:27 final size:26
Alignment explanation
Indices: 16589159--16589212 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
16589149 TGGTCCTTTT
16589159 TTAGACTAGGAATGAATCCGTAATGCC
1 TTAGACTAGGAATGAATCCGT-ATGCC
* *
16589186 TTAGACTGGGAATGACTCCGTATGCC
1 TTAGACTAGGAATGAATCCGTATGCC
16589212 T
1 T
16589213 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTAGGAATGAATCCGTATGCC
Found at i:16591945 original size:26 final size:26
Alignment explanation
Indices: 16591905--16591957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16591895 CCAGTCCGAT
* *
16591905 CTTAGGCTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
16591931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16591957 C
1 C
16591958 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16592789 original size:26 final size:26
Alignment explanation
Indices: 16592760--16592810 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16592750 GGTCCGATCC
16592760 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16592786 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16592811 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16595434 original size:25 final size:26
Alignment explanation
Indices: 16595392--16595441 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
16595382 CCGGTCCGAT
* *
16595392 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16595418 CTTAGACT-AGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
16595442 ACCTATGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16596316 original size:26 final size:26
Alignment explanation
Indices: 16596287--16596337 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16596277 CCGTCCGATC
*
16596287 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGAAATGAACTCCGTATGG
16596313 TTAGACTGGAAATGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCGTATG
16596338 CCTATGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGG
Found at i:16596760 original size:891 final size:885
Alignment explanation
Indices: 16592153--16598182 Score: 8236
Period size: 891 Copynumber: 6.8 Consensus size: 885
16592143 CGGGCAGGCG
* * * * * *
16592153 GTGGATCAATAGGGAGGTAGGTCGGTTTAGGCCCATCTTCTTATTTCTTCCATGCCAATGCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* *
16592218 TTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** * **
16592283 CTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTCA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * *
16592348 GAAGGAGTTTTGGCCCCAAACGTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAT
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
16592413 ATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAA
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16592478 ATACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT
* * *
16592543 CTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
16592608 TGTGCGCACACCCCCCCGGCCCCCTCAATCGTCGAAACCCCAATGCCGCCAGTTAGGTTCTCCGG
455 TGTGCGCACACCCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G
* * * * *
16592673 CGATGGTGTCCCGACAAAGAAAAATGCGACACCGGAACATGCCCGAGCCCAGCAAGTGCTGCCGC
518 CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
*
16592738 AACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
583 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACT
* * *
16592803 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGAGATG
647 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * ** *
16592868 CGTAAGTCGAGGATCAACCGGGTCCCTCTCTGCGTGCTACCAATCCTGCTGCTACAACCCTCAGT
712 CGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGT
** * * *
16592933 TTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCAAACCGACGAAACGAGCGGGCG
776 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
16592998 GGCGAGTGGGCACTATGCCGGCCAGAGAGGCGGGATGTGCAAGCC
841 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
*
16593043 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
16593108 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCATGTGAAGTTTCATGGCAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* ** * *
16593173 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGATTCGGGATTTTTTAAAATTTTTTCA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* *
16593238 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAT
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
16593303 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAA
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16593368 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT
* * *
16593433 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACAGCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
16593498 TGTGCACACACCCCCCTTGGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGA
455 TGTGCGCACACCCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-
*
16593563 CGATGGTGTCCC--CGTTAAGAAAAATGCGGCACCAGCACATGCCCGTGCCCAGCATGTGCTGCC
518 CGATGGTGTCCCGACG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
16593626 GCAACCCT---T---G---G---TT---C--------AA-TCCG-AT-CTTAGATTGGGAATGAA
581 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
* * * * * *
16593665 CTCCGTATGCCTTAGTCAACCCATGAAACGAGCGTACGGGCGCTCTGTCGGCCAAAGGGGCGGGA
645 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
16593730 TGCGCAAGCCGGAGATTGGACGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCTGCAACCCTCG
710 TGCGCAAGCCGGGGA-TCGACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCG
* * * * *
16593795 ATTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGG
774 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
*
16593860 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTC
839 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
16593907 GTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATGTTCATATTTCTGCCATGCCAATGACATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
16593972 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* *
16594037 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * **
16594102 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCATTAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
16594167 ATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCAATTTCAG
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16594232 ACACTTTAATGGCTAGTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
* **
16594297 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
16594362 TGTGCGCACA-CCCCCCGATGCCCCCC-ATCGCCGAAACCCCAATGTCAC-T-GGTCAGGTTATC
455 TGTGCGCACACCCCCCCG--GCCCCCCGATCGCCGGAACCCCAATG-C-CGTCGGTCAGGTTCTC
* ** ** * **
16594423 CGGCGATGGTGTCTCGGTGAAGAAAAATGTAGTACCAGCACATGCTTGAGCCCAGCATGTGCTGC
516 C-GCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
16594488 CGCAACCCGCAGTCCGGTCTGATCTTAGATTGGGAATGAGCTCCGCT-TGCTTAGACTAGGAATG
580 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG-TATGCTTAGACT-GGAATG
* * *
16594552 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCGG
643 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * * * * **
16594617 GATGCGCAAGCCGGGGATCGATCAAGTCCCCCTCTACGTGCTGTCGATCCGGCTGCCATAACCCT
708 GATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCT
* ** * ** *
16594682 AGGTCTTGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGACCCGACGAAACGAGCG
772 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
16594747 GGCGGACGGGCGGGCACTATGCTGGCCAGAGAGGCGGGATGCGCAAGCC
837 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
16594796 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCCGTGCCAATGCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
16594861 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * ** *
16594926 CTCATTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAAATTTTTTAAAATTCTTTCA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
*
16594991 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
16595056 ATT---C-----ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16595113 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGCTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTT
* *
16595178 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATTGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
16595243 TGTGCGCACACCCCCCCGGCCCTCCCAATCGCC-GAACCCCAACGCCGCCGGTCAGGTTCTCCGA
455 TGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-
* * *
16595307 CGATGGTGTCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCGC
518 CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
16595372 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGAATGAACTC
583 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTC
* * * * * **
16595437 CGTATACCTATGTCAACCCACGAAACGAACGTGCAGGTGCTCAGCCACCCAGAGGGGTC-GGATG
648 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATG
* * * * ** *
16595501 CGTAAGCCGGGGATCTGTCGGGTCCCCCTCTGCGTGTTG-CAGATCCTGCTACCGTGACCCTCGA
712 CGCAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCA-ATCCTGCTGCCGCAACCCTCGG
* ** * * *
16595565 TTCAATCCGATCTTGGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
775 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GC
* * * *
16595630 GGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGCCGGGATGCGTAAGCT
836 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
16595680 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCCCTGCCAATGCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
16595745 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
16595810 CTCGTTTTCTATTTTTCATGATTTTCAAAACCTTTTACGGTTCAGGATTTTTTAAAATTTTGTCA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * *
16595875 GAAGGAGTTTTGGCTCCAAACTTGGTAGACTTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
16595940 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAA
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16596005 ACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
*
16596070 ATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
16596135 TGTGCGCACACCCCCCTTGGCCCCCCGGATTGCCGGAACCCCAATGCCGTCGGTTAGGTGCTCCA
455 TGTGCGCACACCCCCC-CGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-
* * * *
16596200 GCGATGGTGTCCCTACGAAGAAAAATGTGGCACAAGCACATGCCCGAGCCCAGCATGTGCTACCG
517 GCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
16596265 CAACCCTCGGTCCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGAAATGAAC
582 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-AATGAAC
*
16596330 TCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* ** * *
16596395 GTGCAAGTTGGGGATCGGCGGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCGCAACCC-CTG
711 GCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTC-G
* * * *
16596459 GTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACAAAACGAACGGG
774 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
16596524 CGGGCAGGCGGGCACTACGTCGGTCGGAGAGACGGGATGCGCAAGCC
839 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
16596571 GTTGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACCATGCCAATTCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* *
16596636 TTTCTGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
16596701 CTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGACTTTTTAAAATTTTTACA
131 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
** * *
16596766 GAAGGAGTTTTGGCCCCAAACTTCTTAGACGTGATCCTTTTATTTTTGTTGGCATTCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
16596831 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACAATTTGAAAAAAGTGTCCTCATTTCAG
261 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16596896 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
* * *
16596961 TTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
16597026 TGTGCACACACCCCCCCCGACCCCCCCGATAGCTGAAACCCCAATGCTGTCGGTCAGGTTCTTCG
455 TGTGCGCACA-CCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-TCC
* * * *
16597091 GCAATGGTGCCCCGACGAAGAAAAATGCGGCATCAGCACATGCCCGAGCCCAGCATGTGCTACCG
517 GCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
16597156 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
582 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAAC
* * * * *
16597221 TCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGACGCTCAGCCGACCAGAGGGGCGGGAT
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * *
16597286 GCGTAAGCCGAGGATCGACAGGGTCCACCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGG
711 GCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGG
*** * * * *
16597351 TCTACTCTGA-CGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGCAATGAGCGGG
775 TCCGGTCTGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * *
16597415 CGGGCGAGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGTC
839 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
**
16597462 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCCCATATTTCTGCCATGCCAATGCCATT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* *
16597527 TTTTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
66 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* ** * *
16597592 CTCGTTTTCTACTTTTCAT-AGTTTTTGAAAC-TTTCACGGTTTGGGATTTTTTAAAATTTTTTC
131 CTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
16597655 AGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
16597720 ATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
260 A-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16597785 AGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
324 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAG
*
16597850 TTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*** * * * * *
16597915 CATGTGCGCACACCCCCCAACCCCCCCGATCGTCAGAACCTCAATGTCGTCGGTTAGGTTCTCCG
453 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
16597980 ACGATGGTGTCCAGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCCG
518 -CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * *
16598045 TAACACTCGGTCCGTTTCGATCTTAGA-TGTGGAATGAACTTCGTATGCTTAGACTGCGAATGAA
582 CAACCCTCGGTCCGGTCCGATCTTAGACTG-GGAATGAACTCCGTATGCTTAGACTG-GAATGAA
* * * *
16598109 CTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTG-GGACACTCAGCCGGCCAGAGGGGCGGGA
645 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* *
16598173 AGCGTAAGCC
710 TGCGCAAGCC
16598183 AACGATCGGC
Statistics
Matches: 4560, Mismatches: 494, Indels: 174
0.87 0.09 0.03
Matches are distributed among these distances:
862 1 0.00
863 91 0.02
864 657 0.14
865 9 0.00
866 5 0.00
867 2 0.00
869 1 0.00
872 1 0.00
875 3 0.00
878 1 0.00
879 2 0.00
880 168 0.04
881 305 0.07
882 14 0.00
883 1 0.00
884 296 0.06
886 2 0.00
887 6 0.00
888 46 0.01
889 637 0.14
890 631 0.14
891 1161 0.25
892 206 0.05
893 15 0.00
894 138 0.03
895 159 0.03
896 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGA
TGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
Found at i:16597206 original size:26 final size:26
Alignment explanation
Indices: 16597177--16597229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16597167 CCGGTCTGAT
*
16597177 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16597203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16597229 C
1 C
16597230 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16598946 original size:26 final size:26
Alignment explanation
Indices: 16598909--16598958 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16598899 CATTCTGATC
16598909 TTAGACGTGGAATGAACTCCGTATAA
1 TTAGACGTGGAATGAACTCCGTATAA
16598935 TTAGAC-TGGGAATGAACTCCGTAT
1 TTAGACGT-GGAATGAACTCCGTAT
16598959 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACGTGGAATGAACTCCGTATAA
Found at i:16599986 original size:888 final size:887
Alignment explanation
Indices: 16598201--16601457 Score: 4532
Period size: 888 Copynumber: 3.7 Consensus size: 887
16598191 GCCGGTCCGG
* * * *
16598201 TCTTAGAGTGGAAATGAACTCCGTATGCATAA-CCAACCGACGAAACGAACGGGCGGGCGGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGGGCGG
* * * * * * *
16598265 GCATTACGTCGACCAGAGAGGTGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
*
16598330 GGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
16598395 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCCATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
16598460 ACTTTTTAGGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCAAGA-TTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAG
* * * *
16598525 ACGTGA-CTTTTGCATTTTTGTTGGCATGCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 ACGTGATC-CTTGTATTTTTTTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
16598589 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
* * * *
16598654 CCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGTGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
16598719 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
* * * * * * *
16598784 GATAGTCAGAACCTCAATGCCGCCGGTCAGGTTTTCCGATGATGGTGTCTCGATGAAGAAAAATG
583 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATA
* * **
16598849 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTC-CATTCTGATCTTAG
648 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGGTT-TGATCTTAG
**
16598913 AC-GTGGAATGAACTCCGTATAATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
711 ACTG-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGA
* * * *
16598977 AACGAGCGTGCGGGCGTTCAACCGGCCAGAGGGGCGGGATGCGTAAGACGAGGATCGGTCGGGTC
774 AACGAGCGTGCGGGCGCTCAACCGGCCA-AGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTC
* *
16599042 CCCCTCTGAGTGCTGCCGATCTTGCTACCG-TAACCCTCGGT-TCGGTCTGA
838 CCCCTCTGAGTGCTGCCAATCCTGCTACCGCT-ACCCTCGGTCT-GGTCTGA
* *
16599092 TCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGGGCGG
* * *
16599157 GCGCTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
*
16599222 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGAAAATTCATACAATGGTC
131 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
* *
16599287 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGTA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* ** *
16599352 ACTATTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTTGCCCCAAACTTGGTAGA
261 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGA
* *
16599417 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTTC-GCTAAAGACTCGAAGTGTACAAG
326 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
16599481 AGTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATAGCTACTAGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
* *
16599546 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTAACGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* **
16599610 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGACCCCCTTGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
* * * * * *
16599674 TCGCCGGCACCCCAATGCCGCCGGTTAAGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACA
585 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATACG
* * * ** *
16599739 GCATCAGCATATGCCCGAGCCAAGCATGTGCCACCGCAACCCTCTGTCTGGTTTGATTTTAGACT
650 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGGTTTGATCTTAGACT
*
16599804 GGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
714 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACG
*
16599869 AGCGTGCGGGCGCTCAACCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCC
778 AGCGTGCGGGCGCTCAACCGGCC-AAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCC
* * * *
16599934 TCTGTGTGCTACCAATCCTGCTGCCGCTACCCTTGGTCTGGTCTGA
842 TCTGAGTGCTGCCAATCCTGCTACCGCTACCCTCGGTCTGGTCTGA
* * ** *
16599980 TCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGC-AGGTGGGCGGGCG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGA-GCGGGCGGGCG
16600044 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTT
65 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA-TGGATCGATAGGGTGGTAGGTGGGTT
* * *
16600108 TAGGCACATCTTTATATTTCTGCCGTGCCAATGCCATTTTTCTGGCTTTTAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* **
16600173 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTGTCACAATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
16600238 AAAGTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCA-AGAGGAATTTTGGCCCCAAACTTGGT
259 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGA-AGGAATTTTGGCCCCAAACTTGGT
*
16600302 AGACGTGATCCTTGTATTTTTTTT-GCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
16600366 AGATTTTGTGACCATTGGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCA-CCAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
*
16600430 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
16600495 CCATTATAAGGGCCAAGTACTAGCACCCATCACACATCATGTACGCACACCCCCTTCGGCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGACCCCCC
** * * *
16600560 CGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCCCCGACGATGGTTTCCCGGTGAAGAAAAAT
582 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAAT
* * **
16600625 ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGACTCGGTCCGATCTTAG
647 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCT-GGTTTGATCTTAG
* *
16600690 ACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAG-------C----
711 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAA
*
16600744 C-A----------GC-C-A---G---AGGGGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCC
776 CGAGCGTGCGGGCGCTCAACCGGCCAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCC
* * * * ** *
16600790 CTCTGCGTGCTGTCATTCCTGCTACCGCAACCCTCACTCTGGTATGA
841 CTCTGAGTGCTGCCAATCCTGCTACCGCTACCCTCGGTCTGGTCTGA
* * ** *
16600837 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACTAGTGGGCGGGCGGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGGGC--
* * ** *
16600902 GTAGGCATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGCTCGATAGGGTGGTAGGTGGG
64 G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* * * *
16600967 TTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTAGCTTGTAAATTCACACAAC
127 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
* *
16601032 GGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTTGTTTTCTATTTTTCATGATTTT
192 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
16601097 TGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCAAAACTTGG
257 TGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGG
* * * * *
16601162 TGGACATAATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
16601227 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAA
* * *
16601292 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAAGGATAGCGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
16601357 GCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCACGTGCGCACACCCCCCCGGCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCC
*
16601422 CGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCT
582 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
16601458 TAGACCGTGG
Statistics
Matches: 2119, Mismatches: 222, Indels: 79
0.88 0.09 0.03
Matches are distributed among these distances:
857 130 0.06
859 1 0.00
861 254 0.12
862 136 0.06
863 113 0.05
864 1 0.00
865 1 0.00
866 2 0.00
876 1 0.00
877 1 0.00
881 1 0.00
886 34 0.02
887 168 0.08
888 591 0.28
889 248 0.12
890 111 0.05
891 100 0.05
892 226 0.11
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (887 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATACGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTTTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGC
GTGCGGGCGCTCAACCGGCCAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTG
AGTGCTGCCAATCCTGCTACCGCTACCCTCGGTCTGGTCTGA
Found at i:16600714 original size:26 final size:26
Alignment explanation
Indices: 16600685--16600737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16600675 TCGGTCCGAT
16600685 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16600711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16600737 C
1 C
16600738 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16602102 original size:26 final size:26
Alignment explanation
Indices: 16602073--16602122 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16602063 ATCCGATATT
*
16602073 AGACTGGGAAAGAACTCCGTATGCTG
1 AGACTGAGAAAGAACTCCGTATGCTG
* *
16602099 AGACTGAGAATGAACTCTGTATGC
1 AGACTGAGAAAGAACTCCGTATGC
16602123 CTAAGTTAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGAGAAAGAACTCCGTATGCTG
Found at i:16602989 original size:26 final size:26
Alignment explanation
Indices: 16602960--16603012 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16602950 CCGGTCTGAT
* *
16602960 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACCCCGTATG
* *
16602986 CTTAGATTGGGAATGAACCCCGTATG
1 CTTAGACTGAGAATGAACCCCGTATG
16603012 C
1 C
16603013 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACCCCGTATG
Found at i:16603233 original size:890 final size:889
Alignment explanation
Indices: 16601462--16609919 Score: 11674
Period size: 890 Copynumber: 9.6 Consensus size: 889
16601452 GGTTCTTAGA
* * * * *
16601462 CCGTGGCTCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTATTTTTTTTGCCATGCCAATGCC
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCTGCCATGCCAATGCC
* *
16601527 ATTTATCTGGCCTT-TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
65 ATTTTTTTGG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* ** * *
16601591 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATAGTTCGTGATTTTTTAAACTTTT
129 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA-ATTT
* *
16601656 TTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCAT
193 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAA
*
16601720 AAAAAAATTCAGCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
257 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
16601785 TTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTG
322 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
16601850 TGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTA-CAACACCCATCGC
387 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** *
16601914 ACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCAACGGAACCCCAATGCCGTCGGTCCGGTT
452 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * ** * ** *
16601979 CTCCGACGATGGTGTCTCGGTGAAGAGAAATGTGGCACCAGCACATGCCCGAGCCGAGCATGTGC
516 CTTCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * *
16602044 TACCGCAACCCTCGGTCCGATCCGATATTAGACTGGGAAAGAACTCCGTATGCTGAGACTGAGAA
581 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* * * * ** * *
16602109 TGAACTCTGTATGCCTAAGTTAACCCACGAAAGGAGCGTGCGGGAGCTCAACCGGCCGGAGGGGT
646 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
* ** * * *
16602174 GGGATGCGCAAGCCGAGGATCGATTGGGTCCCCTTCTGCGTGCTGTCGATCCTGTTGCCACAACC
711 GGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
* * * * * *
16602239 CTC-AGTCTGGTCTAATCTTATACTGGGAATGAACTCTGTACGCCTAAGCCAACCCACGAAACGA
776 CTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
16602303 GCG-GACGGGCGGGCGGGCACTACGTCAGCTAGAGAGGCGGGATGCGCAAG
840 GCGAG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* *
16602353 CCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
16602418 TTTTTTTGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
16602483 GATTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
16602548 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTATTGGCGTGCAAAAAC
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA-
16602613 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16602678 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
16602743 GTTCTAGAGGATTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
16602808 TCATGTGCGCACACCCCCCGACCCCCCCTGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTT
455 TCATGTGCGCACACCCCCCGGCCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTT
* * *
16602873 CGGTGAT-GTGTCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTGC
519 CGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
16602937 CGCAACCTTCAGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGATTGGGAATGA
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * * * * * *
16603002 ACCCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCTGCCGGGCAGAGCGGCGAG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* *
16603067 ATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTC
714 ATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* * * *
16603132 GATCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGA
779 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
* * * *
16603197 GCAGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAG
844 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
** * * *
16603243 CTATAGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTG-CAGTGCCAATGCC
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA-TGCCAATGCC
16603307 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
65 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
16603372 TGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTC
130 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
16603437 TCAGGCAA--AGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCAAA
195 TCA-G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAA
16603500 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
258 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
16603565 TTCAGACACTTTAATGTCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGA
323 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
16603630 GAGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCG
388 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * ** * *
16603695 CATCATGTGCGCACACCCGCCCCCCCGACCCCCTCCGATTGTC-GAATCAACAATACCATCGGTC
453 CATCATGTGCGCACA-----CCCCCCGGCCCCC-CCGATCGCCGGAA-CCCCAATGCCGTCGGTC
* * * * * * **
16603759 AAGTTC-TCGGGTGATGGTGTCCC-AGCGAAGAAAGATGCGGCACCAGCCCAAGCCCGAGGACAG
511 AGGTTCTTC-GGCGATGGTGTCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
*
16603822 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGA
574 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* *
16603886 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCA
639 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* * ** * * * * *
16603951 GAGGGGCGGGATGTGCAAGCCAGGGATTTGCCGGATCCCCCTCTACATGCTGCCGATCCTGCTAC
704 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * * * *
16604016 CCCAACCCTCGATTCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
769 CACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * *
16604081 AAACGAGCGAGCGGACAGGCGAGCACTACGCCGACCAGAGAGGTGGGATGCACAAG
834 AAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
*
16604137 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTT-TGCCATGACAATGCC
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATGCCAATGCC
*
16604201 ATTTTTTTGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
65 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* *
16604266 CGACTCGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTTAAA-TT
130 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA--TTTTTTAAAATTT
*
16604330 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
193 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAA
*
16604395 AAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
258 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16604460 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGT
323 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
16604525 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
388 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
16604590 CATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGGAACCCCAATGCCG-CAGTTCAAGTTC
453 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTC
* * * **
16604654 TTCGGTGATGGTGTCCCAACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGCACT
517 TTCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * * * *
16604719 GTTGGAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAAT
582 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * * *
16604784 GAACACCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGCGCTCAATCGGCCAGAGGGGTG
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
* * * * ** *
16604849 GGATGCGCAGGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTTGATCCTTCTGCCACAACCC
712 GGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * *
16604914 TCGGTCCGGTCTGTTCTTAGACTGGGAATGAACTCCGTATGCATAAGGCAACCAACGAAACGAGC
777 TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* *** * **
16604979 G-GACGGGCGGGCGAGCACTATACCGACCAGAGAGGCGGGATGCATAAG
842 GAG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* *
16605027 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTTGCCCTGGCAATGCC
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCCATGCCAATGCC
* * * *
16605091 ATTTTTCTGGCTTGTAAATTCATAGAACGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGA
65 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
16605156 CGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGG-TTTTTTTAAATTTTT
130 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * **
16605220 TCAGAAGGAGTTTTTGCCCCAAACTTGGT--ACTTGCTCCTTGTATTTTTGTTAGCATGCACCAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
*
16605283 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16605348 CAGGCACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
16605413 GTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
16605478 TCATGTGCGCACACCCCCAGGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCAGTCAGTTTCTT
455 TCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTT
* * * * *
16605543 CGGTGATGGTGTCCCGATGATGAAAATTACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
519 CGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
16605608 TGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * *
16605673 ACTCCGTATGCCTAAGTCATCCCACGAAACGAGTGTACGGGCGCTCA----G-C----GGGCGGG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* ** * * ** ** *
16605729 ATGCGCAAGCTGGGGATC-AATCGGGTCCCCCACGGCGTGCTGCTAATCCTGCTATCGCAACCCT
714 ATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * *
16605793 CGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAAGAGCG
778 CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
16605858 GGCGGGCGGGTGGGCACTACGTCGGCTAGAGAGGTGGGATGCGCAAG
843 AGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* *
16605905 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
16605970 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** * **
16606035 GACTCGTTTTATATTTTTCATGATTTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * ** *
16606100 CAGAAGGACTTTTCGCCCCAAACTTGTTAGACGTGACCCTTGTATTTTTATTGGTGTGCACAAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
* * *
16606165 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTGGTCACCATTTGAAAAAAGTGTCCCCATTTC
261 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16606230 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
326 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16606295 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
391 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
16606360 CTTGTGCGCACACTCCCCTGGCCCCCCCGATCGCCGGAACCCTAATGTCGTCGGTCAGGTTCTCC
456 CATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
* * *
16606425 AGCGATGGTGTCCCCG-TGATGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
520 GGCGATGGTGT-CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
16606489 CGTAA----C---CC--T-CGATC-----C--GG--T----TC-G-AT-CTTAGACTGGGAATGA
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * ** * *
16606528 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGATGCTCAGTCGAG-CAAAGGGACGG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG-GCCAGAGGGGCGG
* ** * * **
16606592 CATGCATAAGCCGGGGATCGGTCGGGTGTCCCCCTCTGCGTGCTACCGATCCCACTGCCACAACC
713 GATGCGCAAGCCGGGGATCGG-CTGG-GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
*
16606657 CTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
776 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
16606722 CGGGCAGGCAGGCGGGCAGTACGTCGGCCAGAGAGGCGGGATGCGCAAG
841 CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* * * * *
16606771 CCGTGGATCGATAGGGTGGTTGGTGAGTTTAGGCACATCTTCATATATCTACCGTGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
16606836 TTTTTTTGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * **
16606901 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
16606965 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGCATGCACAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAAAAA
*
16607030 AATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16607095 AAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
16607160 GTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCCCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
16607225 TCATGTGCGCACACCCCCCCGGCCCCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-T
455 TCATGTGCGCACA-CCCCCCGGCCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
16607289 TCCGGCGATGGTGTCCCAACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
518 T-CGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * ** * * *
16607354 GTCGTAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAATTCTGTACGCTTAGACTGGGAAT
582 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * * **
16607419 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCGCTCAGTCAGCCAGAAGGGTA
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
* * * **
16607484 GGATGCGCAAGCCGGGGATCGG-TCGAGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGTAACC
712 GGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
* * *
16607548 ATCCAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
776 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
16607612 CAAGCGGGCGGGCCGGCGCTACGTCGGCCAGAAAGGCGGGATGCGCAAG
841 CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
*
16607661 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAGGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* **
16607726 TTTTTCTGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
*
16607791 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
16607856 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
* *
16607921 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTCC
261 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * ***
16607986 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCGTTAAAGGGGG-ACAA
326 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGA
* *
16608050 GTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
16608115 TCTTGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCATCGGTCAGGTTCTC
455 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTT
* * * * * * * *
16608180 CGACGATGGTGTCCCCATGATGAAAAATACGACACCAGCACCTGCCCGAGCCCAGCATGTGCAGT
519 CGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
16608245 CGGAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGAATG
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATG
* * * ** *
16608309 AACTTCGTATGCTTAAGTCAACCCACGAAATGAATGTGCGGGCGCTCAGTCGGCCAGAGGGGCGA
648 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
* ** * * **
16608374 GATGTGCAAGCCGAAGAT-GGCCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCT
713 GATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * * * * *
16608438 TGGTCTGGTTTGATCTTATACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGTG
778 CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
16608503 GGCGGGCGGGCGGGCACTACGTTGCCCAGAGAGGCGGGATGCGCAAG
843 AGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* * * *
16608550 CCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTTTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
16608615 -TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
16608679 GACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTCACGGTTCGGGATTTTTT-AAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
16608743 CAGAAGGAATTTTGGCCCCAAATTTGGTGGACGTGATCCTCGTATTTTT-TTCGGCATGCACAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAAAAA
16608807 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16608872 CAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
16608937 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *** * * * *
16609002 TCATGTGCGCACACCCCCC-GACCCCCCGATCGTTAGAACCCCAATGTCGCCAGTCAGGTTCTCC
455 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
*
16609066 GGCGATGGTGTCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
520 GGCGATGGTGTCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
16609130 CGCAACCCTTGGTCGGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACT-GGAATGA
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * * * *
16609194 ACTCCGTATGCCTAACTCAACCCACGTAATGAGCGTGCGGGCGCTCAGCCGGCCATAGGGGCGGG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* ** * * ** *
16609259 ATGCGCAAGCCCGAAATCGG-TCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCTGCAATCCT
714 ATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * *
16609323 CGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACG-AA--A-CG
778 CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
16609384 AGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAG
843 AGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
* *
16609431 TCGTGGATCGATAGGGTGGTAGGT-GGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
16609495 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
16609560 GACTCGATTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTACAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
16609625 CAGCAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
196 CAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
*
16609689 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16609754 CAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
16609819 GTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
16609884 TCATGTGCGCACACACCCCCGGCCCCCCCGATCGCC
455 TCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCC
16609920 TAGGAATGAA
Statistics
Matches: 6744, Mismatches: 715, Indels: 223
0.88 0.09 0.03
Matches are distributed among these distances:
855 58 0.01
856 2 0.00
857 1 0.00
858 2 0.00
860 2 0.00
862 1 0.00
864 22 0.00
865 58 0.01
866 526 0.08
867 89 0.01
871 6 0.00
872 1 0.00
874 4 0.00
876 1 0.00
877 5 0.00
878 305 0.05
879 44 0.01
880 37 0.01
881 499 0.07
882 278 0.04
883 10 0.00
884 93 0.01
885 233 0.03
886 253 0.04
887 454 0.07
888 193 0.03
889 737 0.11
890 1735 0.26
891 209 0.03
892 5 0.00
893 91 0.01
894 432 0.06
895 349 0.05
896 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCG
GCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGA
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC
GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
Found at i:16603889 original size:25 final size:26
Alignment explanation
Indices: 16603855--16603906 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16603845 CTGGTCCGAT
16603855 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16603880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16603906 C
1 C
16603907 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16604781 original size:26 final size:26
Alignment explanation
Indices: 16604744--16604796 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16604734 CCAGTCTGAT
* *
16604744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACACCGTATG
16604770 CTTAGACAGGGAATGAACACCGTATG
1 CTTAGACAGGGAATGAACACCGTATG
16604796 C
1 C
16604797 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACACCGTATG
Found at i:16605660 original size:26 final size:26
Alignment explanation
Indices: 16605631--16605683 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16605621 CCGATCCGAT
16605631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16605657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16605683 C
1 C
16605684 CTAAGTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16608304 original size:26 final size:26
Alignment explanation
Indices: 16608268--16608323 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
16608258 CCGATCCGAT
16608268 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16608294 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16608320 CTTA
1 CTTA
16608324 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16609202 original size:25 final size:26
Alignment explanation
Indices: 16609153--16609204 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16609143 CGGGTCCGAT
**
16609153 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16609179 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16609204 C
1 C
16609205 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16611527 original size:25 final size:26
Alignment explanation
Indices: 16611478--16611529 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16611468 CGGGTCCGAT
**
16611478 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16611504 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16611529 C
1 C
16611530 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16612603 original size:26 final size:26
Alignment explanation
Indices: 16612574--16612626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16612564 CTGGTTGGAT
* *
16612574 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16612600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16612626 C
1 C
16612627 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16613490 original size:26 final size:26
Alignment explanation
Indices: 16613461--16613510 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16613451 GGTCCAATCC
*
16613461 TAGACTGGGAATGAACTCTGTATGGA
1 TAGACTGGGAATGAACTCCGTATGGA
16613487 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
16613511 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGGA
Found at i:16615235 original size:26 final size:26
Alignment explanation
Indices: 16615184--16615235 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16615174 TGGTCTGATT
**
16615184 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCACATGC
16615210 TTAGACTGGGAATGAACTCCACATGC
1 TTAGACTGGGAATGAACTCCACATGC
16615236 CTTTGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCACATGC
Found at i:16616100 original size:26 final size:26
Alignment explanation
Indices: 16616071--16616123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16616061 CCGATTCGAT
*
16616071 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
*
16616097 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
16616123 C
1 C
16616124 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCAGTATG
Found at i:16616437 original size:159 final size:157
Alignment explanation
Indices: 16616097--16616439 Score: 388
Period size: 157 Copynumber: 2.2 Consensus size: 157
16616087 ACTCCGTATG
* * * *
16616097 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* ** * * * * *
16616162 CGACCCGAGGGGCAAGATGCCCAAGCCAGAACGATCGGGCCCCCTTTTACGTGCTGTCGATCTTG
66 CGACCAGAGGGGCAAGATGCAAAAGCCAGAACGACCGGGCCCCCTTCTACGAGCTCTCGATCCTG
* *
16616227 CTGCCGCAACCCTCAGTCCGTTTCGAT
131 CTGCCACAACCCTCAGTCCGTCTCGAT
*
16616254 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* ** ** * *
16616319 C-AGCCAGAGGGTCGGGATGCAAAAGTCGGGGACCGACCGGGTCCCCC-TCTGCGAGCTACT-GA
66 CGA-CCAGAGGGGCAAGATGCAAAAG-C-CAGAACGACCGGG-CCCCCTTCTACGAGCT-CTCGA
* *
16616381 TCCTGCTGCCACAACCCTCGGTCTGGTCT-GAT
126 TCCTGCTGCCACAACCCTCAGTC-CGTCTCGAT
16616413 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16616440 GGGCGGGCGG
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 77 0.49
158 1 0.01
159 68 0.44
160 9 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CGACCAGAGGGGCAAGATGCAAAAGCCAGAACGACCGGGCCCCCTTCTACGAGCTCTCGATCCTG
CTGCCACAACCCTCAGTCCGTCTCGAT
Found at i:16618776 original size:26 final size:26
Alignment explanation
Indices: 16618740--16618792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16618730 CTGGTCTGAT
* *
16618740 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16618766 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16618792 C
1 C
16618793 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16624122 original size:26 final size:26
Alignment explanation
Indices: 16624093--16624145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624083 CCGGTCTGAT
*
16624093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
16624119 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16624145 C
1 C
16624146 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16624987 original size:19 final size:19
Alignment explanation
Indices: 16624959--16625015 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
16624949 TGTTACCGCA
*
16624959 ACCCTTGGTCTGATCCGAT
1 ACCCTCGGTCTGATCCGAT
16624978 ACCCTCGGTCTGATCCGAT
1 ACCCTCGGTCTGATCCGAT
16624997 ACCCTCGGTCTGATCCGAT
1 ACCCTCGGTCTGATCCGAT
16625016 CTTAGACTGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.16, C:0.35, G:0.21, T:0.28
Consensus pattern (19 bp):
ACCCTCGGTCTGATCCGAT
Found at i:16625045 original size:26 final size:26
Alignment explanation
Indices: 16625016--16625068 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16625006 CTGATCCGAT
16625016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16625042 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16625068 C
1 C
16625069 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16625947 original size:26 final size:26
Alignment explanation
Indices: 16625909--16625959 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16625899 TGGTCTGATC
*
16625909 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGCGAATGAACTCCGTATGG
16625935 TTAGACTGCGAATGAACTCCGTATG
1 TTAGACTGCGAATGAACTCCGTATG
16625960 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGG
Found at i:16626821 original size:26 final size:26
Alignment explanation
Indices: 16626792--16626844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626782 CCGGTTCGAT
* *
16626792 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16626818 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16626844 C
1 C
16626845 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16627697 original size:26 final size:26
Alignment explanation
Indices: 16627661--16627713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16627651 CCGGTCTAAT
*
16627661 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16627687 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16627713 C
1 C
16627714 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16628411 original size:26 final size:26
Alignment explanation
Indices: 16628382--16628432 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628372 GGTCCGATCA
16628382 TAGACTGGCAATGAACTCCGTATGCT
1 TAGACTGGCAATGAACTCCGTATGCT
* *
16628408 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGCAATGAACTCCGTATGC
16628433 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCT
Found at i:16628886 original size:730 final size:718
Alignment explanation
Indices: 16627492--16628940 Score: 1981
Period size: 719 Copynumber: 2.0 Consensus size: 718
16627482 GGGCCAAGTG
* ** *
16627492 CCAGCACCCATCGCACATCATGTGTGCAAACCCCCTGGCCCCCCCGATCACCGAAACCTCAATGC
1 CCAGCACCCATCGCACATCATGTGCGCAAACCCCCCAGCCCCCCCGATCACCGAAACCCCAATGC
* * *
16627557 CGCCAATCAGGTTCTCCGACGATGGTGTCTCGGTGAAGAAAAATATGACACCAGCACATGCCTGA
66 CGCCAATCAGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGA
* * * *
16627622 GCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTTCGTATG
131 GCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCATAGACTGGCAATGAACTCCGTATG
* *
16627687 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCATGCGGGCGCTAAAC
196 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCATGCGGGCGCTAAAC
* * * * *
16627752 CCGTCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCCCGTCCCCCTTTGCGTGCTACCGATCC
261 CCGCCAGAGGAGCGGGATGAGCAAGCCGGGGATCGGACCCGTCCCCCTCTGCGTGCTACCGATCC
* *
16627817 TGCTACAGCAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAGCTCCGTATGCCTATGCCAA
326 TGCTACAGCAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16627882 CCGACGAAACGAACGGGCGGGCACTACGTCGGCTAGAGAGGCAGGATGCGCAAGCCGTGGATCGA
391 CCGACGAAACGAACGGGCGGGCACTACGCCGGCCAGAGACGCAGGATGCGCAAGCCGTGGATCGA
** * * *
16627947 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCT
456 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCCAATGCCATTTTCCTCGCT
*
16628012 TGTAAATTCATACAATGGTCCCTTAAGCGTTCAAGTGAACTTTCATGGCAAGACGACTCGTTTTC
521 TGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAACTTTCATGGCAAGACGACTCGTTTTC
* * * * **
16628077 TATTTTTCACCATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTGTT
586 TATTTTTCAACATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAACTTTTTCAGAAGAAGTT
* * * * *
16628142 TTGGTCCTAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
651 TTGGCCCCAAACTTGCTAGACATGATCCTTGTATTTTT-TTCGCATGCACAAAAAAATTCAGCAA
16628207 AAAA
715 AAAA
* * * *
16628211 CCAGCACCCATCGCACATCATGTGCGCACACCCTCCCAG-CCCCCTGATCATCGGAACCCCAATG
1 CCAGCACCCATCGCACATCATGTGCGCAAACCC-CCCAGCCCCCCCGATCACCGAAACCCCAATG
* * * * *
16628275 CTGCCAGTCAGGTTCTCCGACGATGGTGTCCCGAG-GAAGAAAAATGCGGCACCAGTACATGCCC
65 CCGCCAATCAGGTTCTCCGACGATGGTGTCCCG-GTGAAGAAAAATACGACACCAGCACATGCCC
* * *
16628339 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCATAGACTGGCAATGAACTCCGTA
129 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCATAGACTGGCAATGAACTCCGTA
* * * *
16628404 TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCGGGCGCT-C
194 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCATGCGGGCGCTAA
** * ** *
16628468 AGTCGACCAGAGGAGTGGGATGAGCAAGCCGGGGATC-GACGGGGT-CCCCTCTGCGTGCTGCCG
259 ACCCG-CCAGAGGAGCGGGATGAGCAAGCCGGGGATCGGAC-CCGTCCCCCTCTGCGTGCTACCG
* * * * ** * ** *
16628531 TTCCTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
322 ATCCTGCTACAGCAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAG
* * *
16628596 CCAACCGACGAATCGAGCGGACGGGCGGGCTAGCGGGAACTATGCCGGCCAGAGACGCGGGATGC
387 CCAACCGACGAA---A-CGAACGGGC-GG---GC----ACTACGCCGGCCAGAGACGCAGGATGC
16628661 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCCAA
440 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCCAA
* *
16628726 TGCCATTTTCCTCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
505 TGCCATTTTCCTCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAACTTTCATGGC
* *
16628791 AAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAC
570 AAGACGACTCGTTTTCTATTTTTCAACATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAC
* *
16628856 TTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTTTCGCATGCAC
635 TTTTTCAGAAGAAGTTTTGGCCCCAAACTTGCTAGACATGATCCTTGTATTTTTTTCGCATGCAC
16628921 AAAAAAATTCAGCAAAAAA
700 AAAAAAATTCAGCAAAAAA
16628940 C
1 C
16628941 TCGAAGTGTA
Statistics
Matches: 633, Mismatches: 81, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
718 86 0.14
719 251 0.40
720 4 0.01
721 1 0.00
722 8 0.01
723 2 0.00
726 2 0.00
729 29 0.05
730 250 0.39
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (718 bp):
CCAGCACCCATCGCACATCATGTGCGCAAACCCCCCAGCCCCCCCGATCACCGAAACCCCAATGC
CGCCAATCAGGTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCATAGACTGGCAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCATGCGGGCGCTAAAC
CCGCCAGAGGAGCGGGATGAGCAAGCCGGGGATCGGACCCGTCCCCCTCTGCGTGCTACCGATCC
TGCTACAGCAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGGCGGGCACTACGCCGGCCAGAGACGCAGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCCAATGCCATTTTCCTCGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAACTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCAACATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAACTTTTTCAGAAGAAGTT
TTGGCCCCAAACTTGCTAGACATGATCCTTGTATTTTTTTCGCATGCACAAAAAAATTCAGCAAA
AAA
Found at i:16629301 original size:26 final size:26
Alignment explanation
Indices: 16629272--16629324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16629262 CCGGTCCGAT
*
16629272 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16629298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16629324 C
1 C
16629325 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16630191 original size:26 final size:26
Alignment explanation
Indices: 16630162--16630214 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16630152 CCGGTCTGAT
16630162 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16630188 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16630214 C
1 C
16630215 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16630864 original size:887 final size:884
Alignment explanation
Indices: 16628210--16636648 Score: 10496
Period size: 887 Copynumber: 9.7 Consensus size: 884
16628200 TCAGCTAAAA
* * * *
16628210 ACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCAG-CCCCCTGATCATCGGAACCCCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * *
16628274 GCTGCCAGTCAGGTTCTCCGACGATGGTGTCCCGAGGAAGAAAAATGCGGCACCAGTACATGCCC
66 GCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCCC
* * *
16628339 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCATAGACTGGCAATGAACTCCGTA
131 GAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACTGG-AATGAACTCCGTA
* * *
16628404 TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCGGGCGCTCA
194 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
16628469 GTCGACCAGAGGAGTGGGATG-AGCAAGCCGGGGATC-GACGGGGT-CCCCTCTGCGTGCTGCCG
259 GCCGGCCAGAGGGGCGGGATGCA-CAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCG
* * * * * *
16628531 TTCCTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
322 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
16628596 CCAACCGACGAATCGAGCGGACGGGCGGGCTAGCGGGAACTATGCCGGCCAGAGACGCGGGATGC
387 CCAACCGACGAA---A-CGGACGGGC-GG---GCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* *
16628661 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCCAA
444 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
16628726 TGCCATTTTCCTCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
509 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
16628791 AAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAC
574 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
16628856 TTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTA-TTTTTTTCGCATGCA
639 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * * *
16628920 CAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGGGTCCCA
704 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
16628985 ATTTCAGACACTTTAATTGCTACTGGCAGCAAACATGTAAAATCTCAAACGCTCTTTAAGGGGGT
769 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
16629050 GTGATTTCTTGAGGTTTGACGAGGGATCGGGGGCCAATATAAGGGCCAGGT
834 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
16629101 ACCAGCACCCATCGCACATCATGTACGCACA-CCCCCTGGCCCCCCACGATCGTCGGAACCCTAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-CGATCGTCGGAACCCCAA
* * * * * *
16629165 TGCTGTCGGTCAGGTTATTCGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
65 TGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCC
* * *
16629230 CGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGT
130 CGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACT-GGAATGAACTCCGT
*
16629295 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCCC
193 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
16629360 AGCTGGCCAGAGGGGCGGGATGCTCAAACCGGGAATCGATCGGGTCCCACTC-GAAGTGCTGTCG
258 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTG-CGTGCTGCCG
* ** *
16629424 ATCCTGCTACCACAACCCTC-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAA
322 ATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
16629488 GCCAACCGAAGAAACGGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCA
386 GCCAACCGACGAAACGGA----CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* * * *
16629553 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCCTGACAATGA
447 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* *
16629618 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCC-TAAGCCTTCATGTAAAATTTCATGGCAAG
512 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* *
16629682 ACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
577 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
16629747 TTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGGCGTGATCTTTGTATTTTTTTTGGCATGCACAA
642 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
16629812 AACAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
707 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
16629877 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
772 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16629942 AGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
837 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
16629990 ACCAGCACCCATCGTACATCATGTGTGCACATCCCCCCCAGCCCCCCCGATCGTCGGAACCCCAA
1 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * *
16630055 TGTCGCCGGTCAGGTTCTCCAACGATGGTGTCCCGGTGAAGAACAATGCGACACCAGCACATGAC
65 TGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCC
* *
16630120 TGAGCCCAGCATGTGCTACCGCAACCCTTCGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGT
130 CGAGCCCAGCATGTGCTGCCGCAACCC-TCGTCCGGTCTGATCTTAGACTG-GAATGAACTCCGT
* * * **
16630185 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGTGTGTTTGGGCGCTC
193 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
16630250 AGCCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGTTGA
258 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * **
16630315 TCTTGCTACCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGC
323 TCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
16630380 CAACCGACGAAACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCTGT
388 CAACCGACGAAACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* *
16630445 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTCTGCCGTGCCAATGCCATTTT
453 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
*
16630510 TCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
518 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * ** * * * *
16630575 CATTTTCTATTTTTTATAATTTTTGATACTTTCTACGGTTCAGGATTTTTTAAAATTTTTTTAGA
583 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* ** * * * *
16630640 AGGAGTTTTGGTCCCAAACTTTTTAGACGTGATCCTTCTACTTTTGTTGGCATGCAAAAAAAAAT
648 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
16630705 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
713 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
16630770 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
778 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
16630835 CGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGT
843 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
16630877 ACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCTCCCCCCGA---TC-G---CCC--
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCCGATCGTCGGAACCCCAA
* * **** * ** * * * *
16630932 -G--G--TG-AAGAAAAATACGGTGATGGTGTCCCGGTAAAGAAAAATACGGCACCAGCACATGC
65 TGCCGCCGGTCAG-GTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGC
* * *
16630991 CCGAGCCCAGCATGTGCTACCGTAA-CC-C-T-CAGTCTGA---T---C--------A----G-A
129 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTA
* * *
16631033 T-CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
194 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
16631097 ACCGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
259 GCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * * *
16631162 CTTGCTGCCGCAACCCTCGCTCCAGTCTGATCTTATACTGGGAATTAACTTCGTATGGCTAAGCC
324 CCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * ***
16631227 AACAGACGAAACGGGCGGACGGGCGGGCGGGCACTACACCGACCAAAGAGACGATTTGCGCAAGC
389 AACCGACGAAA----CGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* **
16631292 CGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGAGAT
450 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
16631357 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACG
515 TTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
** * *
16631422 ACTCGTTTTCTATTTTTCACGATTTTCAAAACCTATTACGGTTCGGGATTTTTTAAAATTTTTTC
580 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * *
16631487 ATAAGGAGTTTGGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATACATAAAAC
645 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * *
16631552 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTAA
710 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
16631617 GACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAACGGGGTGTGAGT
775 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
16631682 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
840 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
** * **
16631727 ACCAGCACCCAAGGCACATCAT-TGGCGCACACCCCCCCGGCCACCCCGATCACCGGAACCCCAA
1 ACCAGCACCCATCGCACATCATGT-GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* *
16631791 TGCCGCCGGTCAGGTTCTCC-AGCGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGAACATGC
65 TGCCGCCGGTCAGGTTCTCCGA-CGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGC
* * **
16631855 CCGAGCCCAGCATTTGTTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCG
129 CCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACT-GGAATGAACTCCG
* * *
16631920 TATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCT
192 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ** * * *
16631985 CAGCCGTCCAAAGAGGCGGGATGCGCTAGCTGAAGATCGGTTGGGTCCCCCTCTGCATGCTGTCG
257 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * * *
16632050 ATCCTGCTACCGTAACCTTCGCTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
322 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
16632115 TCAACCGACGAAACAGG-CGGGCGGGCGGGCATTATGCCGGCCAGAGATGAGGGTTGCGCAAGCT
387 CCAACCGACGAAAC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
16632179 GTGTATCGATAGGGTGGTAAGTGGCTTTAGGCACATATTCATATTTCTGCCATGCCAATGCCATT
451 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
16632244 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
516 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
16632309 CTCGTTTTCTTTTTTTCATGACTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAA
581 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
**
16632374 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTGTTGTATTTTTTTTGGCATGCACAAAAAA
646 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
16632439 ATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTA
711 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-A
* *
16632503 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
775 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
16632568 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
840 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* ** * *
16632613 ACTAGCACCCATC-CACATCATGTGCGCACACCCCACCTCGG-CCCCCCGATCACCGGGACCCTA
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-CGGCCCCCCCGATCGTCGGAACCCCA
* * * * *
16632676 ATGCCGTCGGTCTGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGACACCAGCACATGC
64 ATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGC
* * *
16632741 CCGAGCCCAACATTTGCTACCGCAA----C--CC--TC-GA---T---CT-G---G---TCCG-A
129 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTA
* * * * *
16632783 T-CTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGCGTCCGGGCGCTCA
194 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
16632847 GTCGGCCAGAGGGGCAGGATGCACAAGCCGTGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGAT
259 GCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
** * * * * *
16632912 CCCACTATCGTAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCA
324 CCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
16632977 AACCGACGAAACGGACGGGCGCTGGCGGGCACTACGTCGGCCAGAGAGGCGAGATGCTCAAACCG
389 AACCGACGAAACGGACGGGCG--GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
16633042 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCACGGCATTGCCATTT
452 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * * *
16633107 TTCTAGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATAT-AGAGTTTCATGGCAAGATGA
517 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA-AGTTTCATGGCAAGACGA
* ** * * *
16633171 CTCATTTTCTATTTTTCATAATTTTCGATACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTA
581 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * * *
16633236 GAAGGAGTTCTGGTCCCCAAACATT-TTAGACGTGATCCTTCTACTTTTTTTGGCATGCAAAAAA
646 GAAGGAGTTTTGG-CCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * **
16633300 AAATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCAAATTTC
709 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16633365 AAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
774 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
16633430 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
839 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
16633476 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * *
16633539 GTCGCCGGTCAGGTTCTCCTG-CGATGGTGTCCTGGTGAAGAACAAA-GCGGCACCAGCACATGC
66 GCCGCCGGTCAGGTTCTCC-GACGATGGTGTCCCGATGAAGAA-AAATGCGACACCAGCACATGC
* * * *
16633602 CTGAGCCCAGAATGTGCTGCCACAACCCTCGATCCGGTCTGAACTTAGACTGAGAATGAACTCCG
129 CCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACTG-GAATGAACTCCG
*
16633667 TA----T-G-CT-----T--A----G-A---CT--G-------A-G--A--A---TGCGGGCACT
192 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
16633694 CAGCCGGCCAAAGGGGCGGGATGCACAAGCTGGGGATCAGTCGGATCCCCCTCTGCGTGCTGCTG
257 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* ** * ** * * * *
16633759 ATCCTGCTGCCATAACCCTCGGTATGGTTTGTTCTTAGACTGGTAATGAACTCCGTATTCCTAAG
322 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
16633824 CTAACCGACGAAACGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCT
387 CCAACCGACGAAACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
16633889 TGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCCATGCCAATGCCATTT
452 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
** *
16633954 TTCTCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGAC
517 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
**
16634019 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
582 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
** * * * * * *
16634084 AAAAATTTTTGGCCCTAAACTTTGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
647 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
16634149 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
712 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
16634214 CACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGTATGAGTTC
777 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
16634277 TCAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
842 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
16634320 ACCAGCACCCATCGCATATCATGTGCG-ACACCCCCCCGGCCACCCTCGATCGTCAG-ACCCCAA
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCCGATCGTCGGAACCCCAA
* * * * ** * **
16634383 TGCCGCTGGTTAGGTTCTCCAACGATGGTGTCCAGGCGAAGAAAAATGC-AGACCAAAACATGCC
65 TGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCC
* * * * * *
16634447 TGAGCCTAGCATGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGT
130 CGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACT-GGAATGAACTCCGT
*
16634512 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA-CC-C---AC-A--------------
193 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
16634557 A---GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCGTATGCATGCTACCGA
258 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * *
16634619 TCCTGCTACCGCAACCCTC-AGTCTGGTCTGATCTTAGACTGGTATTGAACTTCGTATGCCTAAG
323 TCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** *
16634683 CCGACCGACGAAACAGG-CGAGCAGGCGGGCACTACGTTGGCCAGAGAAGCGGGATGCGCAAGCC
387 CCAACCGACGAAAC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
*
16634747 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTTGCCAATGCCATT
451 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
16634812 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
516 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
16634877 CTCGTTTTCTTTTTTTCAGGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCA
581 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * *
16634942 GAATGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAA
646 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * *
16635007 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTATTTCAG
711 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16635072 ACACTTTAATTGCTACTGGCAGCAAA-C--T----TGT-AAATGCTCTTTAAAAGGGGTGTGAGT
776 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGT
*
16635129 TCGT-GAGGTTTGGTGAGGGATAGGGGG-CAATATAAGGGCCAAGT
840 TC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
16635173 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCCGATCGTCGGAACCCTAA
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCCGATCGTCGGAACCCCAA
* * * ** * *
16635238 TACCGCCAGTCAGGTTCTCCGGCGATGGTGTCCCGACAAAGAAAAATGCTACGCCAGCACATGCC
65 TGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCC
* *
16635303 CGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGGT-TCGATCTTAGACTGGCAATGAACTCTG
130 CGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCCGGTCT-GATCTTAGACTGG-AATGAACTCCG
* * * *
16635367 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCGCT
192 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** * * * * *
16635432 CAGACGGCCAGAGGGGCGGGATGTGCAAGTCGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCG
257 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
** * * * * *
16635497 ATGTTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
322 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * ** *
16635562 CCAACCGACGAAATGGGCGGGCAGGCGGGCAAGTGGGCATTACGTCAGCCAGAGAGGCAAGATGT
387 CCAACCGACGAAA----CGGACGGGCGGGC----GGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * * *
16635627 GCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATGTTTCTGCCGTGCCAA
444 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* * *
16635692 TGCCATTTTTTTGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCATGTGAAGTTTCGTGGC
509 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * *
16635757 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTTAAAT
574 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
16635822 TCTTTCAGAAGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCA
639 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
16635887 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCC
704 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
16635952 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGT
769 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
16636017 GTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGT
834 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
16636068 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGATCCCCCCC-ATCGTTGGAACCCTAA
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCCGATCGTCGGAACCCCAA
* * *
16636131 TGCCGCCGGTCAGGTTCTTCGACGATGGTGTCCCGATGAAGAAAAATGCAACACCAGCAAATGCC
65 TGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCC
* * ** * * *
16636196 CGAGGCCAGCATGTACTGCCGCAACCCTCGGTTTGGTCCGATCTCAGACTGGGAATGAACTCCAT
130 CGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACT-GGAATGAACTCCGT
* ** * *
16636261 ATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACAAATGTAACGAGCGTGCGGGCGCTC
193 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
16636326 AGCCGGCCTGAGAGGCGGGATGCATAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAA
258 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * *
16636391 TCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
323 TCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
16636456 CAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGTAAGCCGT
388 CAACCGACGAAACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * *
16636521 GAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCGTGCCAATGCCATTTT
453 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* * * * *
16636586 TTTGGCTTGTAAATTGATACAACGGTCCCTTAAGCCTTCATGTTAGGTTTCATGGCAAGACGA
518 TCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
16636649 GCGTACGAGC
Statistics
Matches: 6557, Mismatches: 780, Indels: 428
0.84 0.10 0.06
Matches are distributed among these distances:
843 3 0.00
844 154 0.02
845 50 0.01
846 339 0.05
847 224 0.03
848 3 0.00
849 139 0.02
850 472 0.07
851 20 0.00
852 5 0.00
853 44 0.01
854 60 0.01
855 52 0.01
856 101 0.02
857 7 0.00
858 1 0.00
859 486 0.07
860 182 0.03
861 97 0.01
862 231 0.04
863 218 0.03
864 85 0.01
865 8 0.00
866 3 0.00
867 8 0.00
868 5 0.00
869 9 0.00
870 5 0.00
871 6 0.00
872 64 0.01
873 2 0.00
874 3 0.00
875 1 0.00
876 5 0.00
877 4 0.00
879 120 0.02
880 1 0.00
881 2 0.00
882 6 0.00
883 10 0.00
884 1 0.00
885 183 0.03
886 687 0.10
887 701 0.11
888 134 0.02
889 353 0.05
890 485 0.07
891 52 0.01
892 225 0.03
893 389 0.06
894 51 0.01
895 61 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAAATGCGACACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
Found at i:16631936 original size:26 final size:26
Alignment explanation
Indices: 16631898--16631950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16631888 CTAGTCTGAT
16631898 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16631924 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16631950 C
1 C
16631951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16632308 original size:886 final size:884
Alignment explanation
Indices: 16631034--16636648 Score: 6893
Period size: 886 Copynumber: 6.4 Consensus size: 884
16631024 CTGATCAGAT
* * * *
16631034 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
16631099 CGGCCAAAGGGGCGGGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
16631163 TTGCTGCCGCAACCCTCGCTCCAGTCTGATCTTATACTGGGAATTAACT-TCGTATGGCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCC
* ** * * *
16631227 AACAGACGAAACGGGCGGACGGGCGGGCGGGCACTACACCGACCAAAGA-GA-CGATTTGCGCAA
194 AACCGACGAAAC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGA--TGCGCAA
* **
16631290 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGAG
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16631355 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGA
318 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
16631420 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTATTACGGTTCGGGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
16631485 TCATAAGGAGTTTGGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATACATAAA
448 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
16631550 ACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
16631615 AAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAACGGGGTGTGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
* **
16631680 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAGGCACA
643 GTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
**
16631745 TCAT-TGGCGCACACCCCCCCGGCCACCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
708 TCATGT-GCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
16631809 CCAGCGATGGTGTCCCGATGAAGAAAAATGCGGCACCAGAACATGCCCGAGCCCAGCATTTGTTG
771 CCAGCGATGGTGTCCCGACGAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTG
*
16631874 CCGCAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATG
836 CCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
* * *
16631924 CTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * *
16631989 CGTCCAAAGAGGCGGGATGCGCTAGCTGAAGATCGGTTGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
16632054 TGCTACCGTAACCTTCGCTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * * * *
16632119 CCGACGAAACAGGCGGGCGGGCGGGCATTATGCCGGCCAGAGATGAGGGTTGCGCAAGCTGTGTA
196 CCGACGAAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGA
* * *
16632184 TCGATAGGGTGGTAAGTGGCTTTAGGCACATATTCATATTTCTGCCATGCCAATGCCATTTTTCT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
16632249 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
16632314 TTTCTTTTTTTCATGACTTTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAAGAAG
391 TTTCTATTTTTCACGA-TTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
**
16632378 GAGTTTTGGCCCCAAACTTGGTAGACGTGATTGTTGTATTTTTTTTGGCATGCACAAAAAAATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
*
16632443 AGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACA
520 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACA
*
16632507 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
* *
16632572 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC-CACATCATGT
649 AAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * *
16632636 GCGCACACCCCACCTCGGCCCCCCGATCACCGGGACCCTAATGCCGTCGGTCTGGTTCTCCGGCG
714 GCGCACACCCC-CC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCG
* * * * *
16632701 ATGGTGTCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATTTGCTACCGCAA
777 ATGGTGTCCCGACGAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAA
16632766 --C-C---C---TC-GA---T---CT-G---G---TCCG-AT-
842 CCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATG
* * * * * *
16632784 CTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGCGTCCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
16632849 CGGCCAGAGGGGCAGGATGCACAAGCCGTGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * * *
16632914 CACTATCGTAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
16632979 CCGACGAAACGGACGGGCGCTGGCGGGCACTACGTCGGCCAGAGAGGCGAGATGCTCAAACCGTG
196 CCGACGAAACGGGCGGGCG--GGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTG
* * *
16633044 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCACGGCATTGCCATTTTT
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * * *
16633109 CTAGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATAT-AGAGTTTCATGGCAAGATGACT
324 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA-AGTTTCATGGCAAGACGACT
* ** * *
16633173 CATTTTCTATTTTTCATAATTTTCGATACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGA
388 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* * * * *
16633238 AGGAGTTCTGGTCCCCAAACATT-TTAGACGTGATCCTTCTACTTTTTTTGGCATGCAAAAAAAA
453 AGGAGTTTTGG-CCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * ** *
16633302 ATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCAAATTTCAA
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16633367 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
* *
16633432 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 CTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
16633497 TGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCTGC
711 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGC
* ** * * * * *
16633561 GATGGTGTCCTGGTGAAGAACAAA-GCGGCACCAGCACATGCCTGAGCCCAGAATGTGCTGCCAC
776 GATGGTGTCCCGACGAAGAA-AAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
16633625 AACCCTCGATCCGGTCTGAACTTAGACTGAGAATGAACTCCGTATG
840 AACCCTCGGTCTGGTCTGATCTTAGACTG-GAATGAACTCCGTATG
16633671 C-T----T----A-G-A---C---TG----AG---A---ATG---C--G-G-GCA----CTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
16633698 CGGCCAAAGGGGCGGGATGCACAAGCTGGGGATCAGTCGGATCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * * * * *
16633763 TGCTGCCATAACCCTCGGTATGGTTTGTTCTTAGACTGGTAATGAACTCCGTATTCCTAAGCTAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
16633828 CCGACGAAACGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCTTGGA
196 CCGACGAAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGA
*
16633893 TCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
** *
16633958 CACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* **
16634023 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAA
391 TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
* * * * * *
16634088 ATTTTTGGCCCTAAACTTTGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
456 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
16634153 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
521 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
16634218 TTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA-GGGTATGAGTTCTCAA
586 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAA
* * *
16634281 GGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGC
651 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
16634346 G-ACACCCCCCCGGCCACCCTCGATCGTCAG-ACCCCAATGCCGCTGGTTAGGTTCTCCAACGAT
716 GCACACCCCCCCGGCC-CCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGAT
* * * * * * * *
16634409 GGTGTCCAGGCGAAGAAAAATGC-AGACCAAAACATGCCTGAGCCTAGCATGTGTTGCCGTAACC
779 GGTGTCCCGACGAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
16634473 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
844 CTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
*
16634515 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC-----AC-A------A-G-GC-CA--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
16634563 --G----AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCGTATGCATGCTACCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
16634622 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGTATTGAACT-TCGTATGCCTAAGCCG
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
* * * * * *
16634686 ACCGACGAAACAGGCGAGCAGGCGGGCACTACGTTGGCCAGAGAAGCGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTGG
* *
16634751 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTTGCCAATGCCATTTTTT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTC
16634816 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
16634881 TTTTCTTTTTTTCAGGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAT
390 TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* * *
16634946 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* * *
16635011 AGCTAAAAACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
520 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
16635076 TTTAATTGCTACTGGCAGCAAA-C--T----TGT-AAATGCTCTTTAAAAGGGGTGTGAGTTCGT
585 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAAGGGGTGTGAGTTC-T
* * *
16635133 -GAGGTTTGGTGAGGGAT-AGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
16635196 TGCGCACACCCCCCCGGCCACCCCCGATCGTCGGAACCCTAATACCGCCAGTCAGGTTCTCCGGC
713 TGCGCACACCCCCCCGG-C-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGC
* * * * *
16635261 GATGGTGTCCCGACAAAGAAAAATGCTACGCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
776 GATGGTGTCCCGACGAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
16635326 ACCCTCGATCCGGT-TCGATCTTAGACTGGCAATGAACTCTGTATG
841 ACCCTCGGTCTGGTCT-GATCTTAGACTGG-AATGAACTCCGTATG
* *
16635371 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAC-GAGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAG-GCGCTCAG
* * * * * * * *
16635435 ACGGCCAGAGGGGCGGGATGTGCAAGTCGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATG
65 CCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
16635500 TTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCC
* * * * *
16635564 AACCGACGAAATGGGCGGGCAGGCGGGCAAGTGGGCATTACGTCAGCCAGAGAGGCA-AGATGTG
194 AACCGACGAAA----CGGGCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGG-AGGGATGCG
* * * *
16635628 CAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATGTTTCTGCCGTGCCAAT
250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
* * *
16635693 GCCATTTTTTTGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCATGTGAAGTTTCGTGGCA
315 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * *
16635758 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTTAAATT
380 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * *
16635823 CTTTCAGAAGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCAT
445 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
*
16635888 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCA
510 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
16635953 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTG
575 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
16636018 TGAGTTCTCAAGGTTTGATGAGGGAT-AGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
640 TGAGTTCTCAAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
16636082 CACATCATGTGCGCACA-CCCCCTGATCCCCCCCATCGTTGGAACCCTAATGCCGCCGGTCAGGT
704 CACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
16636146 TCTTC-GACGATGGTGTCCCGATGAAGAAAAATGCAACACCAGCAA-ATGCCCGAGGCCAGCATG
768 TCTCCAG-CGATGGTGTCCCGACGAAGAAAAATGCGACACCAG-AACATGCCCGAGCCCAGCATG
* * * * *
16636209 TACTGCCGCAACCCTCGGTTTGGTCCGATCTCAGACTGGGAATGAACTCCATATG
831 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
* ** * *
16636264 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACAAATGTAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
** * ** * * **
16636329 CGGCCTGAGAGGCGGGATGCATAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
16636394 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
16636459 CCGACGAAACGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGTAAGCCGTGAA
196 CCGACGAAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGA
* * *
16636524 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCGTGCCAATGCCATTTTTTT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
* * * *
16636589 GGCTTGTAAATTGATACAACGGTCCCTTAAGCCTTCATGTTAGGTTTCATGGCAAGACGA
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
16636649 GCGTACGAGC
Statistics
Matches: 4091, Mismatches: 489, Indels: 295
0.84 0.10 0.06
Matches are distributed among these distances:
843 3 0.00
844 160 0.04
845 53 0.01
846 158 0.04
847 222 0.05
848 1 0.00
849 132 0.03
851 11 0.00
852 2 0.00
853 51 0.01
854 48 0.01
855 56 0.01
856 105 0.03
857 1 0.00
858 2 0.00
859 481 0.12
860 183 0.04
861 102 0.02
862 224 0.05
863 221 0.05
864 23 0.01
865 3 0.00
866 3 0.00
867 3 0.00
868 3 0.00
869 2 0.00
870 8 0.00
871 4 0.00
873 2 0.00
874 1 0.00
875 1 0.00
876 3 0.00
877 5 0.00
878 1 0.00
879 110 0.03
880 1 0.00
882 2 0.00
883 10 0.00
884 1 0.00
885 175 0.04
886 541 0.13
887 370 0.09
888 2 0.00
889 11 0.00
890 176 0.04
891 2 0.00
892 1 0.00
893 304 0.07
894 46 0.01
895 61 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
CCGACGAAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGG
TGTCCCGACGAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATG
Found at i:16634525 original size:26 final size:26
Alignment explanation
Indices: 16634489--16634541 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16634479 CTGGTCTGAT
16634489 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16634515 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16634541 C
1 C
16634542 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16635385 original size:26 final size:26
Alignment explanation
Indices: 16635345--16635397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16635335 CCGGTTCGAT
*
16635345 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
16635371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
16635397 C
1 C
16635398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:16636277 original size:26 final size:26
Alignment explanation
Indices: 16636241--16636290 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16636231 GTCCGATCTC
*
16636241 AGACTGGGAATGAACTCCATATGCTT
1 AGACTAGGAATGAACTCCATATGCTT
*
16636267 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCATATGC
16636291 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCATATGCTT
Found at i:16636326 original size:893 final size:877
Alignment explanation
Indices: 16633684--16636648 Score: 3954
Period size: 859 Copynumber: 3.4 Consensus size: 877
16633674 AGACTGAGAA
* * * * *
16633684 TGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCACAAGCTGGGGATCAGTCGGATCCCCCTCTG
1 TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGG-TCCCCCTCTG
* * ** ** * *
16633749 CGTGCTGCTGATCCTGCTGCCATAACCCTCGGTATGGTTTGTTCTTAGACTGGTAATGAACTCCG
65 CGTGCTGCTGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * ** *
16633814 TATTCCTAAGCTAACCGACGAAACGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGAT
130 TATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGGCGGGAT
* * *
16633879 GCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCCATGCC
195 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
* ** *
16633944 AATGCCATTTTTCTCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATG
260 AATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
** *
16634009 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
325 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAA
* * * *
16634074 ATTTTTTCAGAAAAATTTTTGGCCCTAAACTTTGTAGTCATGATCCTTGTATTTTTGTTGGCATG
390 ATTTTTTCAGAAGAATTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
16634139 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
454 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
16634204 CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG
519 CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
16634268 TATGAGTTCTCAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
584 TGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
16634333 GCATATCATGTGCG-ACACCCCCCCGGCCACCCTCGATCGTCAG-ACCCCAATGCCGCTGGTTAG
648 GCACATCATGTGCGCACACCCCCCCGGCCACCC-CCATCGTCGGAACCCTAATGCCGCCGGTCAG
* * * * * *
16634396 GTTCTCCAACGATGGTGTCCAGGCGAAGAAAAATGCAGACCA-AAACATGCCTGA-GCCTAGCAT
712 GTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGCACACCAGCAA-ATGCCCGAGGCC-AGCAT
* * * *
16634459 GTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
775 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
16634524 GGAATGAACTTCGTATGCCTAAGT---C----A-A---
840 GGAATGAACTCCGTATGCCTAAGTCAACATGAAGAGCG
* * * *
16634551 --C---C-CACA-A-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCGTATG
1 TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG-GTCCCCCTCTG
* * * * * * * * * *
16634608 CATGCTACCGATCCTGCTACCGCAACCCTC-AGTCTGGTCTGATCTTAGACTGGTATTGAACTTC
65 CGTGCTGCTGATCCTGCTGCCACAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * ** *
16634672 GTATGCCTAAGCCGACCGACGAAACAGGCGAGCAGGCGGGCACTACGTTGGCCAGAGAAGCGGGA
129 GTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGGCGGGA
*
16634737 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTTGC
194 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGC
16634802 CAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
259 CAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* * *
16634867 GGCAAGACGACTCGTTTTCTTTTTTTCAGGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAA
324 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAA
16634932 AATTTTTTCAGAATG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
389 AATTTTTTCAGAA-GAATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
16634996 AGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGT
452 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
16635061 CCCTATTTCAGACACTTTAATTGCTACTGGCAGCAAA-C--T----TGT-AAATGCTCTTTAAAA
517 CCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT--AA
* * *
16635118 GGGGTGTGAGTTCGT-GAGGTTTGGTGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACC
580 GGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
16635182 CATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCCGATCGTCGGAACCCTAATACCGCCAG
644 CATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCC-ATCGTCGGAACCCTAATGCCGCCGG
* * * * *
16635247 TCAGGTTCTCCGGCGATGGTGTCCCGACAAAGAAAAATGCTACGCCAGCACATGCCCGAGCCCAG
708 TCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGC-ACACCAGCAAATGCCCGAGGCCAG
* * * * * *
16635312 CATGTGCTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGA
772 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
16635377 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
837 CTGGGAATGAACTCCGTATGCCTAAGTCAA--CATG-AA-GAGCG
* * ** * * *
16635422 TACGAGCGCTCAGACGGCCAGAGGGGCGGGATGTGCAAGTCGAGGATCGGCCAGGTCCCCCTCTG
1 TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTC-GGTCCCCCTCTG
** * *
16635487 CGTGCTG-TCGATGTTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTC
65 CGTGCTGCT-GATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCC
*
16635551 GTATGCCTAAGCCAACCGACGAAATGGGCGGGCAGGCGGGCAAGTGGGCATTACGTCAGCCAGAG
129 GTATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGC-A-----C--TACGTCAGCCAGAG
** * * * *
16635616 AGGCAAGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATGTTTC
186 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
16635681 TGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCATGTGA
251 TGCCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA
* *
16635746 AGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCAGGA
316 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
* * *
16635811 TTTTTTTAAATTCTTTCAGAAGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
381 TTTTTTAAAATTTTTTCAGAAGAATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
16635876 TTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAA
445 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
16635941 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
510 AAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
16636006 TTTAACGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACC
575 TTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACC
* * *
16636071 AGCACCCATCGCACATCATGTGCGCACA-CCCCCTGATCC-CCCCCATCGTTGGAACCCTAATGC
638 AGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCACCCCCATCGTCGGAACCCTAATGC
* *
16636134 CGCCGGTCAGGTTCTTCGACGATGGTGTCCCGATGAAGAAAAATGCAACACCAGCAAATGCCCGA
702 CGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGC-ACACCAGCAAATGCCCGA
* * * *
16636199 GGCCAGCATGTACTGCCGCAACCCTCGGTTTGGTCCGATCTCAGACTGGGAATGAACTCCATATG
766 GGCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
16636264 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACAAATGTAACGAGCG
831 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC--ATG-AA-GAGCG
* * * * *
16636315 TGCGGGCGCTCAGCCGGCCTGAGAGGCGGGATGCATAAGCCGGGGATCGATCGGGTCCCCCTCTG
1 TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTC-GGTCCCCCTCTG
* *
16636380 CGTGCTGCTAATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
65 CGTGCTGCTGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
16636445 TATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGTGGGAT
130 TATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGGCGGGAT
* * *
16636510 GCGTAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCGTGCC
195 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
* * * *
16636575 AATGCCATTTTTTTGGCTTGTAAATTGATACAACGGTCCCTTAAGCCTTCATGTTAGGTTTCATG
260 AATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
16636640 GCAAGACGA
325 GCAAGACGA
16636649 GCGTACGAGC
Statistics
Matches: 1828, Mismatches: 206, Indels: 110
0.85 0.10 0.05
Matches are distributed among these distances:
851 11 0.01
852 2 0.00
853 50 0.03
854 51 0.03
855 47 0.03
856 95 0.05
857 3 0.00
858 1 0.00
859 483 0.26
860 4 0.00
861 4 0.00
862 1 0.00
865 1 0.00
866 1 0.00
868 1 0.00
873 1 0.00
876 1 0.00
877 3 0.00
878 1 0.00
879 128 0.07
880 3 0.00
885 146 0.08
886 1 0.00
887 353 0.19
888 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 324 0.18
894 45 0.02
895 63 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGTCCCCCTCTGC
GTGCTGCTGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGGCGGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCA
ATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAA
TTTTTTCAGAAGAATTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG
TGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCCGGCCACCCCCATCGTCGGAACCCTAATGCCGCCGGTCAGGTTC
TCCGACGATGGTGTCCCGACGAAGAAAAATGCACACCAGCAAATGCCCGAGGCCAGCATGTGCTG
CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACATGAAGAGCG
Done.