Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 88 of 160
Found at i:16775908 original size:17 final size:17
Alignment explanation
Indices: 16775887--16775932 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
16775877 TATTTTTTTA
16775887 TTTTTGTTTCTGTTTTGG
1 TTTTTGTTT-TGTTTTGG
16775905 TTTTTGTTTTGTTTTGG
1 TTTTTGTTTTGTTTTGG
*
16775922 TTTTTTTTTTG
1 TTTTTGTTTTG
16775933 CGTCGAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.00, C:0.02, G:0.20, T:0.78
Consensus pattern (17 bp):
TTTTTGTTTTGTTTTGG
Found at i:16775926 original size:12 final size:11
Alignment explanation
Indices: 16775888--16775932 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
16775878 ATTTTTTTAT
*
16775888 TTTTGTTTCTG
1 TTTTGTTTTTG
16775899 TTTTGGTTTTTG
1 TTTT-GTTTTTG
*
16775911 TTTTGTTTTGG
1 TTTTGTTTTTG
*
16775922 TTTTTTTTTTG
1 TTTTGTTTTTG
16775933 CGTCGAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.00, C:0.02, G:0.20, T:0.78
Consensus pattern (11 bp):
TTTTGTTTTTG
Found at i:16776123 original size:24 final size:23
Alignment explanation
Indices: 16776096--16776175 Score: 115
Period size: 24 Copynumber: 3.3 Consensus size: 23
16776086 ATAAGGTGGC
**
16776096 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGG-AGTTGGTTGGGTAAT
16776120 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGG-GAGTTGGTTGGGTAAT
16776144 TGGTCGAGGAGTTGGTTGGGTAAT
1 TGGTCG-GGAGTTGGTTGGGTAAT
16776168 TGGTCGGG
1 TGGTCGGG
16776176 GTAGTTCGGA
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 2 0.04
24 48 0.92
25 2 0.04
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.33
Consensus pattern (23 bp):
TGGTCGGGAGTTGGTTGGGTAAT
Found at i:16778073 original size:26 final size:26
Alignment explanation
Indices: 16778044--16778096 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778034 CTGGTCTGAT
16778044 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16778070 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16778096 C
1 C
16778097 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16778964 original size:26 final size:26
Alignment explanation
Indices: 16778928--16778980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778918 CCAGTTTGAT
16778928 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16778954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16778980 C
1 C
16778981 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16779563 original size:888 final size:889
Alignment explanation
Indices: 16776314--16784803 Score: 8541
Period size: 889 Copynumber: 9.6 Consensus size: 889
16776304 GTCTACACCA
* * * *
16776314 TATGCTTAGACGGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * *
16776379 CAG-CTGGCTAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTTCCCCTCTGCGTGCTGTC
66 CAGTC-GACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC
* * * * * * * * *
16776443 GATCTTGTTGCCGAAACCCTCGGTCTGAT-TCGATTTTAGATTGGGAATGAAC-TCTGTATGCCT
130 TATCCTGCTACCGCAACCCTTGGTCTGGTCT-GATCTTAGACTGGGAATGAACTTC-GTATGCCT
* ** * * * * *
16776506 AAGCCAACCGACGAAATGAGCGCACGGGCAGGCGGGCACTACGCCGGCCAGAGAAGCGGGATCCA
193 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCG
* *
16776571 CAAGCCGTGGATCGATAGGGTGGCAGCTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
* * * * *
16776636 GCCATTTTTCTAGCTTGTAAATTCGTATAATGGTCCTTTAAGCCTTCATGTGAAGTTTCAAGGCA
323 GCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * **
16776701 AGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTTTAATT
388 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATT
**
16776766 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTCGGCATGCA
453 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTT-GGCATGCA
* * * *
16776830 CAAAAAAATTCAGCTAAAAAATCGAAGGGTACAAGATTTTGTGATCATTTGAAAAAAGTGTTCCC
517 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
16776895 ATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAAT-TCAAATGCTCTTTAAGGGGGT
582 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
16776959 CTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
647 GTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
16777024 TACATCATGTGCGCACACCCCCACCGGCCCCCCCGATCAGT-AGAACCCCAATGCCGCCGGTCAG
712 CACATCAT-TGTGCACACCCCC-CCGGCACCCCCGATC-GTCGGAACCCCAATGCCGCCGGTCAG
** * * * * *
16777088 GTTCTCCGACGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCAAATGCCCAAGCCTAGCACG
774 GTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATG
*
16777153 TGCTGCTGCAA--C-C---C---T-C-A-CTT----T--G---G---TCCG
839 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* *
16777180 -AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * ** *
16777243 CAG-CCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGGTCCCCTTCTGTGTGCTGCC
66 CAGTCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC
* * * * * * ** * * *
16777307 GATCCTACTGCCACAA-CCTTCAGTTTGGTCCAAACTTAGACTGAG-A-GAACTCCGTATGCCTA
130 TATCCTGCTACCGCAACCCTT-GGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
* * * ** * * * *
16777369 AGCAAACCGATGAAACGAACGGGCGGGCAAGCGGGCATTACGCCGGCCAAAGAGGCGGGATGCAC
194 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGC
*
16777434 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATG
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
* * *
16777499 CTATTTTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCAAGTGAAGTTTCATGGCAA
324 CCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * * *
16777564 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTCGGAATTTTTTAAACTTT
389 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTT
* ** * *
16777629 TTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTGTAGGCATGCACA
454 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
16777694 AAAAATTTCAGCTAAAAACTCGAAGTGTATAAGATCTTGTGACCATTTGAAAAAAGTGTCACCAT
519 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16777759 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGT
584 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
16777824 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCA
649 GAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * *
16777889 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACTCAAATACCGTCGGTCAGGTTC
714 CATCAT-TGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
16777954 TCCGACGATGGTGTCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCTAGCATGCGCT
778 TCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* * * *
16778019 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTG
843 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* * **
16778066 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATTAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ** *
16778131 CAGTCGGCCAAAGGGGTGCGATACGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCG
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC-
* * * *
16778196 T-TCCTGCTACTGTAACCC----TC-GATCTGATCCTAGACTGGGAATGAACTTCGTATGCCTAA
130 TATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * * *
16778255 GCTAACCGACGAAACGAGCGGGCTGGCGGGCGGGCACTACGTCGGCCAGAAAGGCAGGATGCGCA
195 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCA
*
16778320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCCATGCCAATGC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
*
16778385 CATTTTTCTGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
325 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* *
16778450 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
* * * *
16778515 TTCAGAAGGATTTTTGGCCCTAAACTTGGTAGATGTGATCCCTGTATTTTTGTTGGCATGCACAC
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16778580 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
16778645 TCAGACA-TTTCAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGT
585 TCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
16778709 GAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCGATCGCA
649 GAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
16778774 CATCATTGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT
714 CATCATTGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
16778839 CTGACGATGGTGTCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
779 CCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
** ** * *
16778904 CCGCAACCCTCGGTCCAGTTTGATCTTACACTGGGAATGAACTCCG
844 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
16778950 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * *
16779015 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCAAGGCTCGGTCAGGTCCCCCTCTGTGTGCTGCCT
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCT
* *
16779080 ATCCTGCTACTGCAACCCTTGGTCTGGTCTGATCATAGACTGGGAATGAACTTCGTATGCCTAAG
131 ATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* * *
16779145 CCAACCAACGAAACGAGCGGGCGGGCGGGCGGGTACTACGTCGGCCAGAGAGGTGGGATGCGCAA
196 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
* * *
16779210 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTTTGTCATGCCAATGCC
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16779275 ATTTTT-TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
326 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * *
16779339 CGAGTCGTTTTCTATTTTTCACAATTGTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTG
391 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT-
* ** * * *
16779404 TT-AGAAGGAGTTTTGACCCCAAACTTCATAGATGTGATCCTTGTATTTTTATTGGCACGCATAA
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16779468 AAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16779533 TCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
585 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16779598 AGTTCT-TGAGGTTTGATGAGTGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCTTCGCA
650 AGTTCTCT-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
16779662 CATCA-TGTGCACACACCACTCCGG-ACCCCTTGATCACCAGAACCCCAATGCCGCCGGTCAGGT
714 CATCATTGTGCACAC-CC-CCCCGGCACCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * * *
16779725 TCTCCAATGATGGTGTCCCGACGAAGAGAAATGCGGCCCCAGCACATGCTTGAGCCCAACATGTG
776 TCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTG
* * *
16779790 CTGTCGCAACCCTCGATGTGGTCCGATCTTAGACTAGGAATGAACTCCG
841 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* *
16779839 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** *
16779904 CAGTCGGCCAAAGGGGCGCGATACGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCG
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC-
* * * * *
16779969 T-TCCTGCTACTGTAACCC----TC-GATCCGATCCTAGACTGGGAATGAACTTCGTATGCCTAA
130 TATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * * * *
16780028 GCTAACCGACGAAACGAGTGGGCTGGCGGGCGGGCACTACGTCGGCCAGAAAGGCAGGATGCGCA
195 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCA
*
16780093 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCCATGCCAATGC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
*
16780158 CATTTTTCTGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
325 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
*
16780223 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
*
16780288 TTCAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCGC-TGTATTTTTGTTGGCATGCACA
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC-CTTGTATTTTTGTTGGCATGCACA
* *
16780352 CAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
519 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16780417 TTCAGACA-TTTCAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
584 TTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
16780481 TGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCGATCGC
648 TGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
16780546 ACATCATTGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
713 ACATCATTGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
16780611 TCTGACGATGGTGTCCCGACGAAGAAAAATACAGCACCAGCACATGCTCGAGCCCAGCATGTGCT
778 TCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
** ** *
16780676 GCCGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCG
843 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
16780723 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * *
16780788 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCAAGGCTCGGTCAGGTCCCCCTCTGTGTGCTGCCT
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCT
* *
16780853 ATCCTGCTACCGCAACCCTTGGTCTAGTCTGATCATAGACTGGGAATGAACTTCGTATGCCTAAG
131 ATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
** * * *
16780918 CCAACTAACGAAACGAGCGGGCGGGCGGACGGGTACTACGTCGGCCAGAGAGGTGGGATGCGCAA
196 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
* * *
16780983 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTTTGTCATGCCAATGCC
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16781048 ATTTTT-TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
326 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * *
16781112 CGAGTCGTTTTCTATTTTTCACAATTGTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTG
391 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT-
* ** * * *
16781177 TT-AGAAGGAGTTTTGACCCCAAACTTCATAGATGTGATCCTTGTATTTTTATTGGCACGCATAA
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16781241 AAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16781306 TCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
585 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** *
16781371 AGTTCT-TGAGGTTTGATGAGTGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCTTCGCA
650 AGTTCTCT-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
16781435 CATCA-TGTGCACACACCACTCCGGC-CCCCTTGATCACCAGAACCCCAATGCCGCCGGTCAGGT
714 CATCATTGTGCACAC-CC-CCCCGGCACCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
16781498 TCTCCGATGATGGTGTCCCGACGAAGAGAAATGCGGCCCCAGCACATGCTCGAGCCCAACATGTG
776 TCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTG
* * *
16781563 CTGTCGCAACCCTCGATTTGGTCCGATCTTAGACTAGGAATGAACTCCG
841 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* *
16781612 TATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * **
16781677 CAG-CCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTTGTGCTATC
66 CAGTCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC
* * ** ** * * *
16781741 GATCCTGCTGCCGCAACCCTCAGTCCAGTCTAATCTTACACTGGGAATGAACTCCGTATGCCTAA
130 TATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * ** * *
16781806 GCCAACCGACGAAATGAGCGAGCGGGCGGGCGACCACTACGTCGGCCAGAGAGGCAGGATGCACA
195 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCA
* * * *
16781871 AGTCATGGATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* * *
16781936 CATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCATGTTAAGTTTCATGGCAAG
325 CATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* ** *
16782001 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAAATTTTTAAAAATTTT
390 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
* * * * * **
16782066 TTTAGCAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTAATTTTTTTTGTTATGCACA
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT-ATTTTTGTTGGCATGCACA
* * * * *
16782131 AAAAAATTCAGCTAAAAAATCGAACTGTACAAGATCTTGTTACCATTTGAAAAAAGTATCCCCAT
519 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16782196 TTCAGACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCACAAATGCTCTTTAAGGGGGTGT
584 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
16782261 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCA
649 GAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
16782326 CATCA-TGTGCGCACACCCCTCGGTC-CCCCCCATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
714 CATCATTGTGCACAC-CCCCCCGG-CACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * *
16782389 CTCCGACGATGGTGTCCCGGTGAAGAAAAATACGGAACCAGCACATGCTCGAGCCTC-GCTTGTG
777 CTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCC-CAGCATGTG
* * * * *
16782453 CTGCTGCAACCCTCGGTTTGGTTCGATCTTAGACTATGAATGAACTTCG
841 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* * * * *
16782502 TATGCTTTGACTGGGAGTGAACTCCGTTTACCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * *
16782567 CAGCCTG-CCAGAGGGGCGGGATACGTAAGCCGGAGATTGGTCGGGTCTCTCTCTGCGTGCTATT
66 CAGTC-GACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC----
** * * ** * ** ** * ** ** *** **** *
16782631 TTTCTATTTTTCATGATTTTCG-AA-ACTTTTTAAGGTTTGAGATT--TTTTAAAATTTTTTTAG
126 TGCCTA----TCCTG-CTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCG
* ** ** * ** * * *** ** * * ** *
16782692 -AAGAATTTTGGC--CC--C-AAACTTG-GTAGACGTG-ATCCTTGTATTTTTGTTGG-CACGCA
186 TATG-CCTAAGCCAACCGACGAAAC--GAGCGGGCGGGCGGGCGGGCA-CTACGTCGGCCA-G-A
* ***** * ** * * * ** ** *** * *
16782748 CA-AAAAAATTCGACGAAAAAC-TCGAAGT-GTATAAGAT--TTTGTGACCATTTGAAAAAAATG
245 GAGGCGGGA-T-G-CGCAAGCCGT-GGA-TCG-ATAGGGTGGTAGGTG--GGTTT-AGGCACATC
* ** * * ** * * ** * * * * * *
16782808 TCCCCATTTCAGACACT-TTAATGGC-TACTAGCAGCAAACCTGTAAAATC-T-CAAATGCT-CT
301 TTCATATTTCTGCCA-TGCCAATGCCAT-TTTTCTG---GCTTGTAAATTCATAC-AATGGTCCC
** * * * * * ** * ** * ***** *
16782868 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC-C---AACAAAAGGGC-C-AA
360 TTAA--GCCT-TCA--TGTGAA-GTTTCAT--GGCA-AGACGACTCGTTTTCTATTTTTCACGAT
* *** * ** * ** *** * ** ******* ***** * *
16782927 GTACCAGCAC---CCATCGCACATCATGTGTGCACACCCCCCGGTCCCCCCGA-TCATCGGAACC
416 TTTTGA-AACTTTTTATGGTTCGGGAT-TTTTTA-A-AATTTTTTCAGAAGGAGT-TTTGG--CC
* ** ** * * ** * * * * *
16782988 CCAATGCCGCCGGTCAG--GTTCTCC-GGCGA-TGGTGTCTCG-ACG-A-AGAAAAATGCGGC-A
474 CCAA--AC-TTGGT-AGATGTGATCCTTG-TATTTTTGT-TGGCATGCACAAAAAAATTCAGCTA
** * * * * * * * * *** *
16783045 CCAGCAC-ATGCCTG-AGCCCAGCATGTGCTACCGTAACC-CTCG-ATCCA--GT-CCGATCTT-
533 AAAACTCGAAG--TGTA--CAAG-AT-T--T--TGTGACCATTTGAAAAAAGTGTCCCCAT-TTC
** * * * * * *
16783102 AG--ACTAGGAAT-G-AACTTCGTATGCTTAGA-CTGGGAATGAA-CTCCATATGC-C--TAA--
587 AGACACT-TTAATGGCTAC-TGGCA-GC--AAACCT-GTAA--AATCT-CAAATGCTCTTTAAGG
* * * * ** * * * * ** ***
16783156 ----GTCA--AC-CCACG--AAATAAGCG-T-GCGGG-CACTCA-ACCGGCCAGAGGGCTGGGAT
643 GGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAAT-ATAAGGGCCA-A--G-TACCA-
* * * ** * * *** * *
16783208 GCA-CAAGCTGGGGA-ATGGTTGGGTC-C-CTCTCTGTGTGCTACCGACCAATCG--C-C-AGAA
702 GCACCCA--T-CGCACATCATTGTG-CACAC-CCCCCCG-GC-ACC--CC---CGATCGTCGGAA
* * * * * **
16783265 CACTAATGCCGTCGATCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCA
755 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCA
** * * * * *
16783330 CATGCTCGAGCCCAGCATGTGCTATCGTAACCCCCGGTCCGATCCGATCTTAGACTGGGAATGAA
820 CATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAA
16783395 CTCCG
885 CTCCG
* *
16783400 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* *** * * * * * * * *
16783465 CAGTCGGCCAGAGGGGCAAAATGCGTAAGCTGGGGATCAGTCGGGTCCCCTTCTGCGTGTTGTCG
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCT
** *** * * * * *
16783530 ATCCTGCTGTCGCAACCCTCATTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCCAAAG
131 ATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* * * * * * *
16783595 CCAACCGACGAAATGAGTGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAT
196 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
* * * * *
16783660 GCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTTTGCCCTGCCAATACC
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
16783725 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
326 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * ** ** *** *
16783790 TGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCAAAATTTTTTTAAATTTTT
391 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
** * *
16783855 TCAGAAGGAGTTTTGGATCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAA
456 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
16783920 ACAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAAATGTCCCCAT
521 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG--AAAAAAGTGTCCCCAT
* * *
16783985 TTCAGATACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATTCTCTTTAAGGGGGTGT
584 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
16784050 GAGTTCT-TGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACTAGTACCCATCGC
649 GAGTTCTCT-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
16784114 ACATCATGTGCGCACACCCACCTCGGC-CCCTCCGATCGCCGGAACCCCAATGTCGCCGGTTAGG
713 ACATCAT-TGTGCACACCC-CCCCGGCACCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* *
16784178 TTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCTAGCATGT
775 TTCTCCGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * * * * *
16784243 ACTGGCACAACCATC-GTTTCGGTCAGATCTTAGACTAGGAATGAACACCG
840 GCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTAGGAATGAACTCCG
* * * *
16784293 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCTCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** * * * *
16784358 CAGCCGGCCAAAGGGGCAGGATGCGTAAATCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGTCG
66 CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCT
** * ** *
16784423 ATCCTGCTGTCGTAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
131 ATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* * *
16784488 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTATGGCGGCCAGAGAGGCGGGATGCGCAA
196 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
* * *
16784553 GTCATGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCC
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
16784618 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
326 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
16784683 CGAGTCGTTTTCTATTTTTCACGATTTTCGAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
391 CGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
* *
16784748 TTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGG
455 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
16784804 GAATGAACTC
Statistics
Matches: 6262, Mismatches: 1099, Indels: 498
0.80 0.14 0.06
Matches are distributed among these distances:
861 1 0.00
862 502 0.08
863 109 0.02
864 137 0.02
865 3 0.00
868 1 0.00
871 1 0.00
873 1 0.00
874 3 0.00
878 1 0.00
879 5 0.00
880 3 0.00
881 3 0.00
882 7 0.00
883 39 0.01
884 720 0.11
885 873 0.14
886 42 0.01
887 41 0.01
888 840 0.13
889 1049 0.17
890 414 0.07
891 248 0.04
892 35 0.01
893 521 0.08
894 118 0.02
895 46 0.01
896 38 0.01
897 42 0.01
898 247 0.04
899 26 0.00
900 22 0.00
901 29 0.00
902 17 0.00
903 29 0.00
904 11 0.00
905 12 0.00
906 17 0.00
907 4 0.00
908 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCT
ATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATTGTGCACACCCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
Found at i:16779846 original size:26 final size:26
Alignment explanation
Indices: 16779817--16779869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16779807 GTGGTCCGAT
16779817 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16779843 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16779869 C
1 C
16779870 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16780737 original size:26 final size:26
Alignment explanation
Indices: 16780701--16780753 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16780691 CCAGTTTGAT
16780701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16780727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16780753 C
1 C
16780754 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16781619 original size:26 final size:26
Alignment explanation
Indices: 16781590--16781640 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16781580 TTGGTCCGAT
16781590 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16781616 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
16781641 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16783150 original size:26 final size:26
Alignment explanation
Indices: 16783099--16783151 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783089 CCAGTCCGAT
* *
16783099 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16783125 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16783151 C
1 C
16783152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16783407 original size:26 final size:26
Alignment explanation
Indices: 16783378--16783430 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783368 CCGATCCGAT
16783378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16783404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16783430 C
1 C
16783431 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16783497 original size:279 final size:279
Alignment explanation
Indices: 16782990--16783500 Score: 776
Period size: 279 Copynumber: 1.8 Consensus size: 279
16782980 TCGGAACCCC
* * *
16782990 AATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTCTCGACGAAGAAAAATGCGGCACCAGCACATG
1 AATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATG
* *
16783055 CCTGAGCCCAGCATGTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTTC
66 CCTGAGCCCAGCATGTGCTACCGTAACCCCCGATCCAGTCCGATCTTAGACTAGGAATGAACTCC
*
16783120 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCAC
131 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCGTACGGGCAC
***
16783185 TCAACCGGCCAGAGGGCTGGGATGCACAAGCTGGGGAATGGTTGGGTCCCTCTCTGTGTGCTACC
196 TCAACCGGCCAGAGGGCTAAAATGCACAAGCTGGGGAATGGTTGGGTCCCTCTCTGTGTGCTACC
16783250 GACCAATCGCCAGAACACT
261 GACCAATCGCCAGAACACT
* **
16783269 AATGCCGTCGATCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCACATG
1 AATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATG
* * *
16783334 -CTCGAGCCCAGCATGTGCTATCGTAACCCCCGGTCC-GATCCGATCTTAGACTGGGAATGAACT
66 CCT-GAGCCCAGCATGTGCTACCGTAACCCCCGATCCAG-TCCGATCTTAGACTAGGAATGAACT
* *
16783397 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGC
129 CCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCGTACGGGC
* ** **
16783462 GCTCAGTCGGCCAGAGGGGC-AAAATGCGTAAGCTGGGGA
194 ACTCAACCGGCCAGA-GGGCTAAAATGCACAAGCTGGGGA
16783501 TCAGTCGGGT
Statistics
Matches: 207, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
278 3 0.01
279 200 0.97
280 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (279 bp):
AATGCCGCCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATG
CCTGAGCCCAGCATGTGCTACCGTAACCCCCGATCCAGTCCGATCTTAGACTAGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCGTACGGGCAC
TCAACCGGCCAGAGGGCTAAAATGCACAAGCTGGGGAATGGTTGGGTCCCTCTCTGTGTGCTACC
GACCAATCGCCAGAACACT
Found at i:16784307 original size:26 final size:26
Alignment explanation
Indices: 16784271--16784323 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16784261 TCGGTCAGAT
16784271 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
*
16784297 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
16784323 C
1 C
16784324 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:16785704 original size:26 final size:26
Alignment explanation
Indices: 16785666--16785718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16785656 CCGATCCGAT
* *
16785666 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16785692 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16785718 C
1 C
16785719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16786577 original size:26 final size:26
Alignment explanation
Indices: 16786548--16786600 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16786538 CCAGTCCAAT
16786548 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
16786574 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
16786600 C
1 C
16786601 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:16787424 original size:370 final size:369
Alignment explanation
Indices: 16786732--16787464 Score: 999
Period size: 370 Copynumber: 2.0 Consensus size: 369
16786722 TTCGGTCCGG
* * * * * **
16786732 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTGACAAAATGAGTGGGCGGGTAGGCGG
1 TCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCAGGCAA
* *
16786797 GCACTATGTCGGCCAAAGAGGCGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCGATGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
16786862 GGCAATCTTCATATTTTTTCCACGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGTCC
131 GGCAATCTTCATATTTCTGCCACGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
* * ** * *
16786927 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTCCATGATTTTAAAAA
196 CTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCAATTTCTATTTTCCACGATTTTAAAAA
* * *
16786992 CTTTTTACAGTTCAGAATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGAC
261 CTTTTTACAGTTCAGAATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGACCCAAACTTGGTAGAC
* *
16787057 GTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTGATTGA
326 GTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTGATTGA
* * ** *
16787101 TCTTAAACTGGGAGTGAAC-TCTGTATGCCTAAGCCAACTGACGAAACGAGCGGTTGGGCGGGCA
1 TCTTAAACTGGGAATGAACTTC-GTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCAGGCA
* * *
16787165 AGCACTACGTCGGCCGTAA-ATGCGGGATGCGCAAGTC-ATGGATCGATAGGGTGGTGGGTGGGT
65 AGCACTACGTCGGCC-AAAGAGGCGGGATGCGCAAG-CGATGGATCGATAGGGTGGTAGGTGGGT
* * *
16787228 TTAGGCACATCTTCATATTTCTGCCATGCTAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
128 TTAGGCA-ATCTTCATATTTCTGCCACGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATG
* *
16787293 GTCCCTTAACCCTTCATGTGAAGTTT-ATTGGCAAGACGACTCAATTTCTCTTTTTCACGATTTT
192 GTCCCTTAACCCTTCATGTGAAGTTTCA-TGGCAAGACGACTCAATTTCTATTTTCCACGATTTT
** * * *
16787357 TGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAATTTG
256 AAAAACTTTTTACAGTTCAGA-ATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGACCCAAACTTG
*
16787421 GTAGACGTGATCCTTGTATTTTTGTAGGCATGCAGAAAAAAATT
320 GTAGACGTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATT
16787465 CAGCTAAAAA
Statistics
Matches: 316, Mismatches: 42, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
368 2 0.01
369 112 0.35
370 202 0.64
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (369 bp):
TCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCAGGCAA
GCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCGATGGATCGATAGGGTGGTAGGTGGGTTTA
GGCAATCTTCATATTTCTGCCACGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATGGTCC
CTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCAATTTCTATTTTCCACGATTTTAAAAA
CTTTTTACAGTTCAGAATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGACCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTGATTGA
Found at i:16787837 original size:26 final size:26
Alignment explanation
Indices: 16787808--16787860 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16787798 CCGGTCTGAT
*
16787808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16787834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16787860 C
1 C
16787861 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16788732 original size:26 final size:26
Alignment explanation
Indices: 16788693--16788745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16788683 CCGGTCCGAT
* *
16788693 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGAGAATGAACTCCATATG
16788719 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
16788745 C
1 C
16788746 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16789613 original size:26 final size:26
Alignment explanation
Indices: 16789584--16789637 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16789574 GGTCCGATCT
*
16789584 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCAGTATGCC
*
16789610 TAGACTGGGAATGAACTCAGTATGCC
1 TAGACTAGGAATGAACTCAGTATGCC
16789636 TA
1 TA
16789638 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCAGTATGCC
Found at i:16790511 original size:26 final size:26
Alignment explanation
Indices: 16790473--16790525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16790463 CCAGTCTGAT
* *
16790473 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16790499 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16790525 C
1 C
16790526 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16790833 original size:891 final size:887
Alignment explanation
Indices: 16787099--16795125 Score: 10131
Period size: 889 Copynumber: 9.1 Consensus size: 887
16787089 ATAATTGATT
* * * *
16787099 GATCTTAAACTGGGAGTGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGTTG-GGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG--GCGGCGGG
** * * * * *
16787163 CAAGCACTACGTCGGCC-GTAAATGCGGGATGCGCAAGTCATGGATCGATAGGGTGGTGGGTGGG
64 CGGGCACTACGTCGGCCAG-AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
16787227 TTTAGGCACATCTTCATATTTCTGCCATGCTAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
128 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAAT
* ** * *
16787292 GGTCCCTTAACCCTTCATGTGAAGTTT-ATTGGCAAGACGACTCAATTTCTCTTTTTCACGATTT
193 GGTCCCTTAAGCCTTCATGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
16787356 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAATTTG
257 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * *
16787421 GTAGACGTGATCCTTGTATTTTTGTAGGCATGCAGAAAAAAATTCAGCTAAAAATTCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
16787486 CAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
16787551 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
16787616 GGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCACCTCGGTCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCC
* * * * * * *
16787681 CCCGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTATTCGGCGATGGTGTCCCGGCGAAGAAAA
581 CCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCC-GAGAAGAAAA
* * * * * * *
16787746 ATAC-AGTACCAGCACATGCTCGAGCCTAGCATGTGCTACCGTAACCCTCGTTCCGGTCTGATCT
645 ATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
*
16787810 TAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCAC
709 TAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
16787875 GAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGG
773 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * ***
16787940 TCCCCCTCTACGTGCTGTCAATCCTGCTACTGTAACCCTCGGTGTTGTCC
838 TCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* * *
16787990 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC--G-AGCGGGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
*
16788052 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
16788117 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTCTAGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
* * *
16788182 CCCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTCGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *** * *
16788247 AACTTTTTACGATTCGGGATTTTTTTAAATTTTTTCAGAAGGAGATTTGGCAAAAAACATGGTAC
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
16788312 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAG
326 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
16788377 ATTTTGTGACCATTTGAAAAAAGTGTCGCCACTTT-AGACACTTTAATGGCTATTGGCAGTAAAC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
16788441 CTGTAAAATCTGAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
16788506 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCCGGTCCCCCC-
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * *
16788570 ATTGCCCG-AACCCCAATGTCGTCGATCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATG
585 ATCG-TCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGA-GAAGAAAAATG
* * *
16788634 TGGA-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAG
648 -CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * *
16788698 ACTGGGAATGAACTCCCTATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTTAACCCACGAA
712 ACTGGGAATGAACTCCGTATGCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** * * * * *
16788763 ACTTGTGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCC
776 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * * * ** * *
16788828 CCCTCTGTGTACTTTTGATCCTGCTACAGCAACCCTTGGTCCAGTTC
841 CCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
** * * * ** * * *
16788875 GATCTTAGACTACGAATGAACTTCGTATTCCTAAGCCAACTGACGAAGTGGGCGGGTAGGCGTGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCGGGC
* * * * *
16788940 GAGCACTATGTCGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTTGGTGGGTT
65 GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
16789005 TAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
130 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* *
16789070 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
16789135 AAACTCTTTACGGTTTGGGATTTTTGAAAATTTTTTCAGAAGGATTTTTGGTCCCAAACTTTGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*
16789200 GACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
16789265 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
16789330 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
16789395 CAACATAAGGGCCGAGTACCAGCACCCATCGCATATCATGTGCGCACA-CCCCCTGGTCCCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCC
* *
16789459 -ATCGTC-AGAACCCCAATGTCGTCGATCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAAT
584 GATCGTCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGA-GAAGAAAAAT
* * * * * * *
16789522 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGACTGGTCCGATCTTAG
647 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * *
16789587 ACTAGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCATGAA
712 ACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
16789652 ACGAGCGTACGGGCGCTCAGCGGGCCAAAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTCC
776 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
*
16789717 CCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCC
841 CCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* * * * *
16789764 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
* *
16789829 GGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * * *
16789894 TAGGCACGTCTTCATATTTCTGCCCTACCAATTCCTTTTTTTTGGCTTGTAAATTCATACAATGG
130 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* **
16789959 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCA
195 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * **
16790024 AAACTTTTTACAGTTCAGAATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGATCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
16790089 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAATTTGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
16790154 GATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
16790219 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
16790284 CAATATAAGGGCCATGTGCCAGCACCCATCGCACATCATGTGCGCACACGCACCTCGGCCCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCC
* * *
16790349 GATCGTCGAAACCCCAATGTCGTCGGTTAGGTTCTTCGGCGATGGTGTCCCGGAGAAGAAAAATG
584 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCC-GAGAAGAAAAATG
** * * *
16790414 CGACACCAGCACATGCAAGAGCCCAGCATGTGCTGTCGCAACCCTCGTTCCAGTCTGATCTTAGA
648 CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
* *
16790479 CTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACACACGAAA
713 CTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** * * *
16790544 TGAGCGTGCGGGCGCTCAATCGGCCAGAGTGGCGGGATGCGTAAGCTGGGGATCGATCGGGTCCC
777 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * *
16790609 CCTCTGTGTGCTGTCGATCCTGCTTCTGTAACCCTCAGTCTGGTCC
842 CCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* * *
16790655 AATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGC
* * *
16790720 GGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGATT
65 GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
16790785 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
130 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* * *
16790850 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTTACGATTTTTG
195 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
16790915 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGAA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
16790980 GTCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
16791045 GATGTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
16791109 CTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGAC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
16791174 CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCACGG-CCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCC
* ** * *** * * *
16791238 TATCGTCGAAACCCCAATGCCACCGGTCAGGGTCTCCAATGATGGTGCCCCGGTGAAGAAAAGTG
584 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCC-GAGAAGAAAAATG
* * *
16791303 CGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGA
648 CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
16791368 CTGGGAATGAA---C---T-C-T-G--T---ATG-----C---T---TAAGTCAACCCACGAAAC
713 CTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
16791408 GAGCGTGCGGGTGCTCAGCCGACCAGTGGGGCGGGATGCACAAGTCGGGGATCGACCGGATCCCC
778 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * * **
16791473 CTCTGTGTGCTGTCGATCCTACTGCCGCAACCCTC-GATTCGATTA
843 CTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAG-TCCGGTCC
* ** * *
16791518 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGGAAACCGATGAAACGAGC--G-GGCGGGTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
* ** * **
16791580 GGCACTACGTCGGCCAGAGAGACGGGATGCTTAAGCCGTAGATCGATAAAGTGGTAGGTGGGTTT
66 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
16791645 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
16791710 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * * *
16791775 AAC-TTTTACGGTTTAGGATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAAAATTGATA
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC-AAACTTGGTA
* * *
16791839 GACGTGATCCTTTTATTTTTTCTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
16791904 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
16791969 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * *
16792034 CAATATAA-GGATAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCGGTCCCCTCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * *
16792098 ATCGTCGGAACGCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATAC
585 ATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGA-GAAGAAAAATGC
* * * *
16792163 GACACCAGCACATGCCCGAG-CCAGCATGTGCTACCGCAACCCTCTGTCTGGTCCGATCTTAGA-
649 GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* *
16792226 TCGGGAATGAACTCCTTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
714 T-GGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * **
16792291 CGAGCGTGCGGGCGTTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAAGTCCC
777 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
*
16792356 CCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
842 CCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* * * ** * *
16792402 AATCTTATACTGGGAATGAACTCTGTATGCCTAAGGGAACTGACGAAACGAGCGGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
* * * * *
16792467 AGGCACTACGCCGGCCATAGAGGCGGGATGCGCAAGTCGTTGATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
16792532 TAGGCACATCTTCATATTTCTACCGTGCCAATACCATTTTTCTGGCTTGTAAATTCATATAATGG
130 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
* * * **
16792597 TCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * **
16792662 AAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTTCAGAATAAGTTTTGGCCCCAAACTTGGT
260 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
16792727 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-TGTACA
324 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * *
16792791 AGAATATGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTTGTAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
16792856 CCTGTAAAATCTCGAATGCTCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGTATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
16792921 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCCCTCCGGCCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * *
16792986 AATCG-CCAGAACCTCAATGCCGAT-GGTCAGGTTGTCCGACGATGGTGTCCCGACGAAGAAAAA
584 GATCGTCGA-AACCCCAATGCCG-TCGGTCAGGTTCTCCGGCGATGGTGTCCCGA-GAAGAAAAA
* **
16793049 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTAGGTCCGGTCCAATCTTA
646 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* *
16793113 GACTGGGAATGAACTCCGTATGCTTA-A-T-G-A-GAACTCAG-ATG-C-AAGTCAACTCACGAA
711 GACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
16793170 ACAAGCGT-C-GG-ACTCAG-CGTGACC--A--GGC-GGAT---CAAGACTGGGGATTGAT--TG
776 ACGAGCGTGCGGGCGCTCAGCCG-G-CCAGAGGGGCGGGATGCGCAAG-CCGGGGATCGATCGGG
* * * * * * * * * *
16793221 TCCACAT-T--GTGTTGGCTATTCTGCTCCT-CAACCTTCAGT-TGGTCT
838 TCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
** * * * * **** * *
16793266 GATCAAAG-CTGTG-ATGAACTCTGAAGGCCTAAAGACCAA-CGAATTTACGAG-GGGCTGC-AG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCT-AAG-CCAACCGACGAAACGAGCGGGCGGCGGG
* * **
16793326 CGGG-A-TA-GTC-G-C-GAGAGGCGGGAT--GAAAG-AGTGGATCGATA-GGTGGTA-GT--AA
64 CGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
16793378 CTAGGCACATCTTCATTACTTT-T----T-TCACTG-CATTTTT-TGGCTTG-AAATTC--ACAA
129 TTAGGCACATCTTCA-TA-TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* * *
16793432 -GG-CCCCT-AG-CTTC-TGTGAA-TCTTCGT-GCAA-ACGACTCGTTTTGTATTTTTCATGATT
192 TGGTCCCTTAAGCCTTCATGTGAAGT-TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * ** * ** * *
16793489 TTTGAAAGTTTTTACGGTTCGGGA-ATCGTAAAA-ATCGTCAG-AGTGCGTCTT-G--CCAAACT
256 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG-GAGTTTTGGCCCCAAACT
*
16793548 T-GTAGAACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
320 TGGTAG-ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
16793612 GTACAAGATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAGATACTTTAATGGTTACTGGCA
384 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
16793677 GCAAACCTGTAAAATCTGAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGCGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
16793742 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACA-CCCCCCGGCC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * * *
16793806 CCCTCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCTGGCGATGGTGTCCCGGCGAAGAA
579 CCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCC-GAGAAGAA
* * * * * *
16793871 AAATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCTGCCGCAACCCTCAGTCTGGTATGATC
643 AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
16793936 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCA
708 TTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
16794001 CGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
772 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * ** * * ** *
16794066 GTCCCCTTCTACGCGCTACCGATCTTGCTGCAGCAACCCTTGGTCTGGTCC
837 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* **
16794117 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--G-AACGGGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
*
16794179 GCCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
16794244 AGGCACATCTTCATATTTCTACCATGCCAATGCTATTTTTCGGGCTTGTAAATTCATGCAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
* * *
16794309 CCATCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *
16794374 AACATTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * ** *
16794439 ACCTGATCCTTTTATTTTTCTTGGCATCCACAAAGCAATTCAGCTAAAAACTCAAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
16794504 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
16794569 TGTAAAATCTCAAATGCTCTTTAAGCGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
16794634 AATATAAGGCCCAACTACCAGCACCCATCGCACATCATGTTCGCACACACCCCCCGGCGCCCCCC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGC-CCCCCC
* * * * * * * *
16794699 GATCGTCGGAACCCCAATGCCGCCAGTTAGGTTCTCCGGCGATGATG-CCCCACCAAAGCAAAAT
584 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGA--GAAGAAAAAT
* ** * *
16794763 GCCG-CACCAGCATATGCCCGATTCCAGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTA
647 G-CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * * * * *
16794827 GATTGGTAATGAACTCCGTATGCTTAGACTAGGAATTAACACCATATGCCTAAGTCAACCCATGA
711 GACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
16794892 AATGAGCGTGTGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGAGTC
775 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
** * ** ** * * * * *
16794957 CCTGTCTGCATGCTACCGATCCTATTACCGTAACCTTCAGTCCGGTCT
840 CCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
* * * *
16795005 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGAGCGGACGAGCGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGC
* * *
16795070 GGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCCGTGTATCCATAGGGTGGT
65 GGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
16795126 CCCTTCAGCC
Statistics
Matches: 6180, Mismatches: 788, Indels: 335
0.85 0.11 0.05
Matches are distributed among these distances:
824 4 0.00
825 165 0.03
826 210 0.03
827 3 0.00
828 10 0.00
830 7 0.00
831 44 0.01
832 12 0.00
833 13 0.00
834 5 0.00
835 23 0.00
836 5 0.00
837 6 0.00
838 8 0.00
839 3 0.00
840 6 0.00
841 10 0.00
842 11 0.00
843 3 0.00
844 10 0.00
845 4 0.00
846 6 0.00
847 15 0.00
848 3 0.00
849 16 0.00
850 16 0.00
851 30 0.00
852 20 0.00
853 16 0.00
854 14 0.00
855 2 0.00
856 2 0.00
857 15 0.00
858 100 0.02
859 399 0.06
860 122 0.02
861 11 0.00
862 25 0.00
863 166 0.03
864 25 0.00
865 11 0.00
866 17 0.00
867 2 0.00
868 5 0.00
869 14 0.00
870 10 0.00
871 15 0.00
873 10 0.00
874 8 0.00
875 2 0.00
876 5 0.00
877 8 0.00
878 16 0.00
879 6 0.00
880 67 0.01
881 9 0.00
882 14 0.00
883 11 0.00
884 154 0.02
885 522 0.08
886 21 0.00
887 477 0.08
888 641 0.10
889 1622 0.26
890 200 0.03
891 689 0.11
892 59 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGAGAAGAAAAATGCGA
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
TGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTCC
Found at i:16792257 original size:26 final size:26
Alignment explanation
Indices: 16792220--16792272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16792210 CTGGTCCGAT
*
16792220 CTTAGATCGGGAATGAACTCCTTATG
1 CTTAGATCGGGAATGAACTCCGTATG
*
16792246 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
16792272 C
1 C
16792273 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:16793966 original size:26 final size:26
Alignment explanation
Indices: 16793935--16793987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16793925 CTGGTATGAT
*
16793935 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16793961 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16793987 C
1 C
16793988 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16795656 original size:26 final size:26
Alignment explanation
Indices: 16795627--16795677 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16795617 TGGTCCGATC
16795627 TTAGACTGAGAATGAACTCCGTATGT
1 TTAGACTGAGAATGAACTCCGTATGT
*
16795653 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
16795678 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGT
Found at i:16795991 original size:167 final size:167
Alignment explanation
Indices: 16795720--16796069 Score: 434
Period size: 167 Copynumber: 2.1 Consensus size: 167
16795710 GCCCAACCAA
* * * * * * *
16795720 CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTTCGTGCTGCCTACCCTAC
1 CCAGAGAGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGACCCTAC
** * * *
16795785 TTTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
66 TACCGCAACCCTCGATCCGATCCGATCCTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCG
* * *
16795850 ACAAAACGAGTGGGCGGGCGGGCGGGCACTAAGCCAG
131 ACAAAACGAGCGGGCCGACGGGCGGGCACTAAGCCAG
* *
16795887 CCAGAGAGGCGGGATGCGCAAGCCAGGGATTGACC-GGATCCCCCTCTGCGTGCTACCGATCCTA
1 CCAGAGAGGCGGGATGCGCAAGCCAGGGATCGACCAGG-TCCCCCTCTGCGTGCTACCGACCCTA
* * *
16795951 CTACCGTAACCCTTGATCC-AGTCCGATCCTAGAATGGGAATGAACTCTGTATTCCTAAGCCAAC
65 CTACCGCAACCCTCGATCCGA-TCCGATCCTAGAATGGGAATGAACTCTGTATGCCTAAGCCAAC
*** * * *
16796015 CGATGCAACGAGCGGGCCGACGGGCGGGCACTACGTCGG
129 CGACAAAACGAGCGGGCCGACGGGCGGGCACTAAGCCAG
16796054 CCAGAGAGGCGGGATG
1 CCAGAGAGGCGGGATG
16796070 TGTAAGTCGT
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
166 3 0.02
167 152 0.98
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.17
Consensus pattern (167 bp):
CCAGAGAGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGACCCTAC
TACCGCAACCCTCGATCCGATCCGATCCTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCG
ACAAAACGAGCGGGCCGACGGGCGGGCACTAAGCCAG
Found at i:16796713 original size:26 final size:26
Alignment explanation
Indices: 16796684--16796736 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796674 CCAGTCCGAT
* * *
16796684 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16796710 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16796736 C
1 C
16796737 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16797518 original size:26 final size:26
Alignment explanation
Indices: 16797489--16797541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16797479 CCAGTCCGAT
16797489 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16797515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16797541 C
1 C
16797542 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16798410 original size:26 final size:26
Alignment explanation
Indices: 16798381--16798433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16798371 CCGATCCAAT
*
16798381 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
16798407 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16798433 C
1 C
16798434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16799301 original size:26 final size:26
Alignment explanation
Indices: 16799272--16799324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16799262 CCAATCCGAT
* * *
16799272 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
16799298 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
16799324 C
1 C
16799325 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:16799632 original size:891 final size:889
Alignment explanation
Indices: 16796981--16803039 Score: 8204
Period size: 889 Copynumber: 6.8 Consensus size: 889
16796971 ATCGATAGGG
* * * * * *
16796981 TGGTCCCTTCAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCATTTTTTATTTTTCACGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* *
16797046 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAACCTTG
66 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * * * * *
16797111 GTTGATGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACGCGAAGTCTA
131 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
16797176 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTT-AGACACTTTAATGGCCACTGCCAGC
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGC
* *
16797240 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * **
16797305 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA--TGTG------CGCCCGATCCC
325 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCC
** * * ** * * **
16797362 CCCGATCACCGGAATCCTAATACCGTCAGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAA
390 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAA
* * * * *
16797427 ATGCAGCACCAGCACATGCCCGAGCCTAGCATCTGCTACCGCAACCCTCGGTCC-AGTCCGATCT
455 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCT
* *
16797491 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
519 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
16797556 GAAATGAGTGTGCGGGCGCTCAACCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGG
584 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAG
* * * * * * *
16797621 TCCCCCTCTGCGTGCTGTCGATCCTGTTGCTGCAACCCTCGATCTGGTCCAATCTTAGATTGGGA
649 TCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGA
* * *
16797686 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAACGGGTGGGCGGGCACTACGT
713 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGAC----GGGCGGGCACTACGC
* * * *
16797751 CGGCCAGAGAGGCGGGATGCACAAGTCGTAGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCT
774 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * *
16797816 TGATATTTTTGCCATGCCAATGCCATTTTTCTGACTTGTAAAATCGTACAA
839 TCATATTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
16797867 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
16797932 TCGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
66 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* *
16797997 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
16798062 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTATTGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
** * *
16798127 AACCTGTAAAATCTCAAATATTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
16798192 GGCCAATATAAGGGCCAAATGCCAGCACCCATCGCACATCA--TGTGCGCACCCCCTCGGCCCCC
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCC
* * * * * * * * **
16798255 CCGATCGCCGAAATCCCGATGCCGTCGGTTAGGTTCTCCGGCGATGGAGTCCCGGTGAAGAAAAA
391 CCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAA
** *
16798320 TGTGGCACCAGCACATGCCCGA-CCCTAGCATGTGCTGCCGCAACCCTCGGTCCGATCCAATCTT
456 TACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
* * *
16798384 AGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACA
520 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
16798449 AAACGAGGGTGCAGGCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGT
585 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGT
* * * * * * ** *
16798514 CCCCCTTTACGCGCTGTCGATCCTGCTACCACAACCATCGGTCTAATCCGATCTTAGACAGGGAA
650 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAA
* ** * *
16798579 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATGCGGGCGGGTGGGCACTACGCCGGCC
714 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACGCCGGCC
*
16798644 AGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
779 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
16798709 TTTGTGCCATACCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
844 TTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* *
16798755 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCACGACGACTCGTTTTTTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * * *
16798820 TCGAAAGTTTTTATGGTTTGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAAGTTG
66 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
16798885 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
*
16798950 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
16799015 AACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
16799080 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCCGGCCCC
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCCGGCCCC
** * * *
16799145 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTTTGGTGATGGTGTCTCGACAAAGAAAA
390 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAA
* * * *
16799210 ATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGATCCAATCCGATCTT
455 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
* * * *
16799275 AGACTGGGAGTGAACTCCGTATGCTTAGACTCGGAATGAACTCCATATGCCTAAGTCAATCCACG
520 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
16799340 GAACGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
585 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGT
* * * * ** *
16799405 CCCCCTCTACGTGCTGTCGATCCTGATGCTGCAACCCTCGGTTCAGTTGGATCTTAGATTGGGAA
650 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAA
* *
16799470 TGAACTCCGTATGCCTAAGCCAACTGATGAAACGAACGGGCGGACGGGCGGGCACTACGCCGGCC
714 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACGCCGGCC
16799535 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
779 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** *
16799600 TTTATGCCATGAAAATGCCATTTTTCTGGCTTGTAAATTCATACAG
844 TTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* * *
16799646 TGGTCCTTTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
16799711 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCCA-AAGGAGTCTTGCCCCCAAACTT
66 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-CAGAAGGAGTTTTGGCCCCAAACTT
* *
16799775 GGTAAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGT
130 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
*
16799840 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
**
16799905 AAACCTGTAAAATCTCAAATATTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * **
16799970 GGGCCATTATAAGGGCCAAGTGCCAGTGCCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCC
325 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCC
* * * * * * *
16800034 CCCGATCATCGAAACCCTAATGCCACCGGTTAGGTTCTCCCGCGATGGTGTCCCGACGAAGAAAA
390 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAA
* * * *
16800099 ATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTT
455 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
* *
16800164 AGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
520 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * *
16800229 AAACAAGCGTGCGGGCGCTTAGCCGACCAGAAGGGCGAGATGTGTAAGCCGGGGATCAATCGAGT
585 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGT
* * * *
16800294 CCGCCTCTACGTGGTGCCGATCCTGCTGCCGCAACCCTTC-GTCCGGT-CTACTCTTAGACTAGG
650 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCC-TCGGT-CGGTCCGA-TCTTAGACTGGG
* * * * * *
16800357 AATGAACTCCGTTTGCCTAAGCCAACTGACGGAACGAATGGGCGGGCGGGAGGGCACTACGCCGG
712 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACGCCGG
16800422 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
777 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
16800487 TATTTGTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
842 TATTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
16800535 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
16800600 TCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTCTGGCCCCAAACCTG
66 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
** * * **
16800665 GTAGA-GTGATCCTTGTATTTTTTTTCACAAGAACAAAAAAATTCAGCTAAAAACTTGAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
** *
16800729 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTTGACACTTTAATGGCTAATGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
16800794 AACCTCTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGG
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
16800859 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT-TCGCACACCCCCCCGGCCCC
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT-GCACACCCCCCCGGCCCC
*
16800923 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCAACGAAGAAAA
390 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAA
* * * *
16800988 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTT
455 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
* * * *
16801053 AGTCTAGGAATGAACTCCGTATGCTTAGACTGGGATTGAACTCTGTATGCCTAAGTCAACCCACG
520 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** * * * ** *
16801118 AAGGGAGCGTGGGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGCCGACT
585 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGT
* * * * *
16801183 CCCCCTTTGCGTGCTGCCGATCCTGCTGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGTGAA
650 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAA
* *
16801248 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG-CAGGCGGGCACTACACCGGC
714 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-GGACGGGCGGGCACTACGCCGGC
*
16801312 CAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
778 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
16801377 ATTTATGCCATGCAAATGCCATTTTTCTGGCTTGTAAATTCATACAG
843 ATTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
* *
16801424 TGGTCCTTTAAGCCTTCATGTGAAGTTTCGTGGCAAGATC-ACTCGTTTTCTATTTTTCATGACT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-CGACTCGTTTTCTATTTTTCATGA-T
* * *
16801488 TTT-GAAACTTTTTATGGTTCGGGATTTTTTTTAAATTTTTTCCA-AAGGAGTTTTGGCCCCAAA
64 TTTCGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTT-CAGAAGGAGTTTTGGCCCCAAA
* * * *
16801551 CTCT-ATAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAATCAGCTAAAAACTCTA
127 CT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTC-A
*
16801615 AA-TGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
189 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
16801679 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGG
254 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
** * * *
16801744 GATAGGGCACCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCC
319 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCC
* * * * * * * ** * *
16801809 GACCACCTCAATCGTCGGAACCCTAATGTCGTCGGTCAGGTTCTCTGATGATGGTGTCTCGACAA
384 GGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGA
* * *
16801874 AGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTCAA----C-GT----T-C
449 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* *
16801929 G--GTT---C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAA
514 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** *
16801978 CCCACGAAACGAACGTGCGGGTGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCTAGGGATAGA
579 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * *
16802043 TCGAGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGAC
644 TCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGAC
* * *
16802108 TGGGAATGAAAC-CTGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGACGGGCGGGCACTAT
708 TGGGAATG-AACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTAC
* *
16802172 GCCGGCCAGAGAGGCGGGATGCCCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACAT
772 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
16802237 CTTAATATTTATGCCATGCCAATGCCCTTTTTCTAGCTTGGAAATTCATACAA
837 CTTCATATTTATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
*
16802290 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
1 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** * * ** *
16802355 TTAAAACTTTTTACGGTTCGAGATTTTTAAAAAATTTTTT-AGAAGGACTTTTGGTACCAAACAT
66 TCGAAACTTTTTACGGTTCGAGATTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
*
16802419 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
130 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
*
16802484 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTT-AGACACTTTAAAGGCTACTGGCAG
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAG
* *
16802548 CAAACCTGTAAAATCTAAAATGCTCTTTTAGGGGGTGT--GTTCTCGAGGTTTGATGAGGGATAG
259 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
16802611 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCC-G-CC
324 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCC
* * * * * * * *
16802674 CCCCGATCGTCAGAACCCCACTGTCACCGGTCATGTTCTCCGACCATGGTATCCTGACGAAGAAA
389 CCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAA
* ** *
16802739 AATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAAGTCTGATCCGATCT
454 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
* * * * *
16802804 TAGACTGGGAATGAACTCTGTATGCTTAGACTCGCAATGAACTCAGTATGCCTAAGTCAACCCAT
519 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** * ** * * * *
16802869 GAATTGAGCGTGCGGG-TCTCAGCCGAACAGAAGGGCCGGATGCGTAAGCTGGGGATCGATCGAG
584 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAG
* ** * * * ** * * *
16802933 ACCCCCTCTGTGTGCTCCCGATCCTGCTACCACAACCCTCAATCCGATTCGATCTTAGACTAGGA
649 TCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGA
* *
16802998 ATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGCGGGC
713 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
16803040 AGGCACTACT
Statistics
Matches: 4583, Mismatches: 519, Indels: 143
0.87 0.10 0.03
Matches are distributed among these distances:
860 94 0.02
862 79 0.02
863 2 0.00
864 119 0.03
865 66 0.01
866 384 0.08
867 6 0.00
868 4 0.00
869 2 0.00
870 3 0.00
872 2 0.00
875 1 0.00
877 1 0.00
880 2 0.00
882 3 0.00
883 2 0.00
884 6 0.00
885 131 0.03
886 388 0.08
887 3 0.00
888 687 0.15
889 1089 0.24
890 56 0.01
891 818 0.18
892 632 0.14
893 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCC
CCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAA
TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTC
CCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACGCCGGCCAG
AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TATGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAA
Found at i:16800190 original size:26 final size:26
Alignment explanation
Indices: 16800161--16800213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16800151 CCGGTCCGAT
16800161 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16800187 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16800213 C
1 C
16800214 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16801079 original size:26 final size:26
Alignment explanation
Indices: 16801050--16801102 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16801040 CCGGTCCGAT
*
16801050 CTTAGTCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16801076 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16801102 C
1 C
16801103 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16802831 original size:26 final size:26
Alignment explanation
Indices: 16802802--16802854 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16802792 CTGATCCGAT
* * *
16802802 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTCGCAATGAACTCAGTATG
16802828 CTTAGACTCGCAATGAACTCAGTATG
1 CTTAGACTCGCAATGAACTCAGTATG
16802854 C
1 C
16802855 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGCAATGAACTCAGTATG
Found at i:16804849 original size:879 final size:880
Alignment explanation
Indices: 16803054--16807154 Score: 4888
Period size: 863 Copynumber: 4.7 Consensus size: 880
16803044 ACTACTGGCT
* *
16803054 AAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
16803119 GGCAGCAAACCTGTATAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGA
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
16803184 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCT
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-
* * * * * * ** * *
16803249 GGCCCTCTCGATCGCCAGAACCCTAATGCTGTCGGTCAGGTTCTTCGGTGATGGTGTCTCGGCGA
194 GGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGTGA
** * * * * * *
16803314 AGAAAAATATGGCACTAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTTGGTTCGGTCT
259 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* ** *
16803379 GATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATGAACTTTGTATGCCTATGTCAA
324 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * *
16803444 CCCACGAAACGAGCATGTGGGCGCTTAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGGGATCGA
389 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGA
* * * * *
16803509 CCGGGTCCCCCTCTGCATGTTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGAC
454 CCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTTAGAC
* *
16803574 TGGGAATGAACTCTGTATACTTAAGCCAACCGACGAAACGA--GCGGGC-GG----ACG--GG-C
519 TGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGCGGGCGGGCACTACGTCGGCC
* *
16803629 ------G-GGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGT
584 AGAGAGGCGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* ** *
16803687 TTCTGTCATGCCAATAACATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCATG
649 TTCTGACATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * * ** *
16803752 TGAAGTTCCATGGCAAGACGACTCGTTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
714 TGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCAAGATTTTCAAAACTTTTTAAGGTTC
* * * *
16803817 GGGATTTTTCAAAATTTTTTCAGAAAGAGTTCTGGGCCCAAACTTGGTAGACGTGATCCTTGTAT
778 GGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
16803882 TTTTGTAGGCATGCATAAAAAAGTCAGCTAAAAACTCG
843 TTTTGTAGGCATGCAAAAAAAAGTCAGCTAAAAACTCG
16803920 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
16803985 CGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
16804050 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCGG
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG
* * * * * * *
16804114 CCCCCCCAATCGTCGGAACCCCAATACCATCGGTCAGGTTCTCCGACAATGGTATCCCGATGAAG
196 CCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGTGAAG
* * * * *
16804179 AAAAATACGGTACCAGCACATGCCCGAGCCCAGTATGTGTTGCCGCACCCCTCGGTCCGGTCCGA
261 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
16804244 TCTTAGACTGGGAATAAACTCCGTATGCTTGGACTGGGAATAAACTCCGTATGCCTAAGTCAACC
326 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
16804309 CACGAAACGAGCGTGCGTGCGCTTAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATTGGCT
391 CACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACC
* * * * * * *
16804374 GGGTCCGCCTCTGCATGCTACCGATCCTACTATCGCAACCCTTAGTCTGATTCGATCTTAGACTG
456 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTTAGACTG
* *
16804439 GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGA-C-CGGGCGGGCACTGCGTTGGCCAG
521 GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGCGGGCGGGCACTACGTCGGCCAG
*
16804502 ATAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
586 AGAGGC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
16804567 TCT-ACAGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
650 TCTGACA-TGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
16804631 TGAAGTTTCAAGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTAAGGTTCG
714 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTAAGGTTCG
* *
16804696 GGATTTTTTAAAATTTTTTCAGAAATATTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATT
779 GGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
16804761 TTTCTAGGCATGCACAAAAAAATTCAGCTAAAAACTCG
844 TTTGTAGGCATGCA-AAAAAAAGTCAGCTAAAAACTCG
* *
16804799 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGGTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
16804864 GGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC-CTGAGGTTTGATGAG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAG
* *
16804927 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTACACCCCCC
130 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * ** * *
16804992 GGCCCCCCCAATCGCCAGAACCCCAATGTCGTCGGTCAGGTTCTCCGATAATGGTGTCCCAGCGA
194 GGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGTGA
* * * * ** *
16805057 A-AAAATATGCTGCACCAGCTCATGCCCGAGCCCAGTATGTGCTGTCGCAACCCTCGGTCTAGTT
259 AGAAAA-ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
16805121 CGATCTTAGAGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTTCTGCTTTAAGT
323 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG-TATGC-CTAAGT
* * * * *
16805186 CAACCCACGAATCGAGCGTACAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTG-GGCA
386 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGG-A
* * * * * *
16805250 TCGGCCGGGTCCCCCTTTCCGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTTCGATCTT
450 TCGACCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTT
* * * * * *
16805315 AGACTAGGAATGAACCCCGTATGCATAAGCCAACCGATGAAACGAGCGGGCGAGAGGGCCGGCAC
515 AGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGC--GC----GGGCGGGCAC
* * *
16805380 TACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCA
574 TACGTCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
16805445 CATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAACGGTCCCTT
638 CATCTTCATATTTCTGACATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
16805510 AAGCCTTCATGTGAAGTTTCTTGGCACGGCGACTCGTTTTCTATTACTCAAGATTTTCAAAACTT
703 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTT
* *
16805575 TTTACGGTTCGGGATTTTCTT-AAATTTTTTCA-AAAGGTGTTTTGGCCCCAAACTTGGTAGACG
768 TTTAAGGTTCGGGATTTT-TTAAAATTTTTTCAGAAAGAT-TTTTGGCCCCAAACTTGGTAGACG
* * *
16805638 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAGTCAGCTAAAAACTCC
831 TGATCCTTGTATTTTTGTAGGCATGCA-AAAAAAAGTCAGCTAAAAACTCG
* * *
16805689 AAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
16805754 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
16805819 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCTTGTGCGCACACCCCCCG
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCG
* * * * * *
16805884 GCCCCCCCGATCGTCCGAATCCTAATACCGTCAGTCAGGTTCTCCGACGATGCTG-CCACGGTGA
195 GCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCC-CGGTGA
* * *
16805948 TGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA--CTC--T-CGGTCC
259 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
16806008 G------G--T-CG---G-A-T-C---T-C--AGACTGGGAATGAACTTCGTATGCTTAAGTCAA
324 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
16806052 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGA
389 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGA
** * * * * * *
16806117 CCGGGTCCCCCTCTGTGTCCTGCCGATCCTGCTATCGCAACCCTCGGTTTGGTTTGATCTTAGAC
454 CCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTTAGAC
* * * * *
16806182 TGGGAATGAGCTCTGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGAACGGGCGGGCACTACG
519 TGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGA----GCG--CGGGCGGGCACTACG
* * * *
16806247 CCGGCCAGAGAGGCGAGATGCACAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATC
578 TCGGCCAGAGAGGCG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
16806312 TTCATATTTCTG-C-TGGGCCAATGCAATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAA
642 TTCATATTTCTGACAT--GCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * ** *
16806375 GCCTTCATGTGAAGTTTC-TTGCTAAGATGACTCGTTTTCTATTTTTTAAGATTTTTGAAACCTT
705 GCCTTCATGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTT
* * *
16806439 TTATA-GTTTGGGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTG
769 TTA-AGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTG
* * * * * * *
16806503 ATGCTTGTATTTTTGTTGGCAAGCAAAAAAAAATCACCTAAAAACGCA
833 ATCCTTGTATTTTTGTAGGCATGCAAAAAAAAGTCAGCTAAAAACTCG
*
16806551 AAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
16806616 -GCGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAG
66 GGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
16806680 GGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
130 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCG
* *
16806745 GCCCCCCCGACCGTC-GTAACCCCAATGCCG-CAGGTCAGCTTCTCC-AGCGATGGTGTCCCGGT
195 GCCCCCCCGATCGTCAG-AACCCCAATGCCGTC-GGTCAGGTTCTCCGA-CGATGGTGTCCCGGT
* * * *
16806807 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCGAGCATGTGCAGCTGCAACCCTCGGT-C--T
257 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
16806869 --G------G--T-----T----T---GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
322 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** *
16806911 AACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGTTGGGGATC
387 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATC
* * * * * * * * * * *
16806976 G-GCTGGTCCCCCTCTGCGTGTTACCAATCTTACTGCCACAACCCTAAGTCTGGTTCGATCCTAG
452 GACCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTTAG
* * * * * *
16807040 ACTAGGAATGAACTCCGTATGCATAAGCCAACCGACGAAATGAACGGGCGGGAGGGCTGACACTA
517 ACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACG-A-GCGCGGG-CGG--G-CACTA
* * * *
16807105 CGTCGACCAGAAAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAG
576 CGTCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
16807155 ACGTGATCCT
Statistics
Matches: 2819, Mismatches: 341, Indels: 156
0.85 0.10 0.05
Matches are distributed among these distances:
856 4 0.00
857 2 0.00
858 3 0.00
859 3 0.00
860 129 0.05
861 196 0.07
862 203 0.07
863 717 0.25
864 15 0.01
865 21 0.01
866 178 0.06
867 4 0.00
868 3 0.00
870 2 0.00
871 2 0.00
872 1 0.00
873 1 0.00
874 1 0.00
877 3 0.00
878 193 0.07
879 255 0.09
880 156 0.06
881 6 0.00
882 148 0.05
883 1 0.00
886 5 0.00
887 1 0.00
889 7 0.00
890 375 0.13
891 179 0.06
892 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (880 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG
CCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGGTGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACC
GGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTTAGACTG
GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGCGGGCGGGCACTACGTCGGCCAG
AGAGGCGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGACATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTAAGGTTCGGG
ATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTAGGCATGCAAAAAAAAGTCAGCTAAAAACTCG
Found at i:16807546 original size:26 final size:26
Alignment explanation
Indices: 16807517--16807569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16807507 CCGGTCCGAT
**
16807517 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16807543 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16807569 C
1 C
16807570 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16808441 original size:26 final size:26
Alignment explanation
Indices: 16808405--16808455 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16808395 CCGATCCGAT
*
16808405 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16808431 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16808456 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16808882 original size:888 final size:883
Alignment explanation
Indices: 16807149--16810136 Score: 3817
Period size: 888 Copynumber: 3.4 Consensus size: 883
16807139 ATCGATAGGG
* * *
16807149 TGGTAGACGTGATCCTTGTATTTTTCTAGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGCG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCG
*
16807214 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
**
16807279 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCAATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
16807344 GTGGCCAAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-------CCCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCC
* * ** * * * ** * *
16807402 CCGGT--CAGG--TTC--T-CGGGCGAT--GGTGTCTC-GACGATGGTGTTTCAGTGAAGAGAAA
261 CCGATCGCCGGAACCCAATGCCGTCGGTCAGGT-TCTCTGACGATGGTGTCCCAGCGAAGAAAAA
* * *
16807457 TACGGCACCAGCACATGCTCGAACCCA-CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
325 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTA
* * * *
16807521 GACTGGGAATTAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGA
390 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGA
* * * * *
16807586 AACGAGCGTGCGGGCGCTCTACCGGCCAGAGGGGCAGGATGCACAAGCCGGAGATCGGCCGAGTC
455 AACGAGCGTGCGGGCG-TTTACCGGCCAGA-GGGCGGGATGCGCAAGCAGG-GATCGGCCGGGTC
* * * * * * * *
16807651 CCCCTCTGTATGCTGCCGGTCCAGCTGCCACAACCCTCGATCT-AGTCGGATCTTACACTGGGAA
517 CCCCTCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAA
* ** * * * *
16807715 TGAACTTCGTATGCCTAAGCCAAATGACGAAACGAGCGGGAGGGCAGGCAGGCACGATGCCGGCC
581 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCC
*
16807780 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
646 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * * *
16807845 CTTCTGCCTTGGCAATGCCAATTTTCTGGCTTGTAAATTAATACAGTGGTCCCTTAAGCCTTCAT
711 TTTCTGCCTTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
16807910 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTACGGTTC
776 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC
* *
16807975 GAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCTCCAAACT
841 G-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
16808019 TGGTAGACGTGATCCTTTTATTTTTGTTGGCTTGCAAAAAAAAATTCAGCTAAAAACTCAAAGCG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCG
* *
16808084 TGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAAT-GCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
16808148 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
16808213 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CGGCCCC
* * * * * * *
16808278 CCCGGATCGTCGGAACCCAATACCGCCAGTTAGGTTCTCTGGCGATGGTGTCCC-GATGAAGAAA
260 CCC-GATCGCCGGAACCCAATGCCGTCGGTCAGGTTCTCTGACGATGGTGTCCCAG-CGAAGAAA
16808342 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
323 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
*
16808407 TAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATACCTAAGTCAACCCAC
388 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCAC
* * * ** *
16808472 GAAATGAGTGTGCAGGCGTTTAGCCGATCAGAGTGGCGGGATGTGCAAGTCAGGGATCGGCCGGG
453 GAAACGAGCGTGCGGGCGTTTA-CCGGCCAGAG-GGCGGGATGCGCAAG-CAGGGATCGGCCGGG
* *
16808537 TCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTAGGA
515 TCCCCCTCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGA
* *
16808602 ATGAACTCCGTATGCCTAAGCCAGCCGACGAAACGAACGGGCGGGCGGGCGGGCACTATGCCGGC
580 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGC
* *
16808667 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTACGTGGGTTTAGGCACATCTTCAT
645 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
16808732 ATTTCTGCCTTGCCAATGCCATTTTTCTAGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCA
710 ATTTCTGCCTTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
16808797 TGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTCAAAACTTTTTAGGGTT
775 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
* *
16808862 CAGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGACCCCAAACT
840 C-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * * *
16808907 TGGTGGACGTGATCCGTGTATTCTTT-TTGGCATGCACAAGAAAGTTCAGCTAAAAACTCGAAGT
1 TGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGC
* * * *
16808971 GTACAAGATTTTGTGTCCA-TTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
16809035 GCAAGCGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
16809100 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GGCCC
* * * * * *
16809165 CCCCGATCGCCGAAACCGTATTGCCGTCGGTCAGGTTCACCGATGATGGTGTCCCAGCGAAGAAA
259 CCCCGATCGCCGGAACC-CAATGCCGTCGGTCAGGTTCTCTGACGATGGTGTCCCAGCGAAGAAA
*
16809230 AAT---G--CC-G--CA------A---C-GC---T--T---G--A-------TCCGATCCAATCT
323 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
* * * * *
16809260 TAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGAAATGAACTCTGTGTTCCTAAGTCAACCAA
388 TAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCA
* * * ** * * * **
16809324 CGAAAGGAGCGTACGGGCACTCAATCGGCCAGAGGACCGGGATGCGCAAGCTGGGGATCGATCGG
452 CGAAACGAGCGTGCGGGC-GTTTACCGGCCAGAGG-GCGGGATGCGCAAGC-AGGGATCGGCCGG
* * * *
16809389 GTCCCCCTCTGCACGCTGTCGATCCTGCTGTCGTAACCCTCGGT-TCGGTCTGATCTTAGACTGG
514 GTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT-GATCTGATCTTAGACTGG
* * *
16809453 GAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCAGGGCGGGCGGGCACTACGCC
578 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGGGCGGGCACTATGCC
* * * * *
16809518 GGCCAAAGAGGCGGGATGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTTGGCTTAGGTACATCTT
642 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
16809583 CATATTTCTGCCATGACAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
707 CATATTTCTGCCTTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
16809648 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACG
772 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* *
16809713 GTTCGGGATTTTTTAAAATTTTTTCAAAAGGACTTTTGGCCCCAAACT
837 GTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
16809761 TGGTAGAC--G-TCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCG
* * *
16809823 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGACAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
16809888 CAAACCTGTAAAATCTCAAATTCTATTTAAGGGGGTGTGAGTTCTCGAGATTTCATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
16809953 GGGG-CAATTATAAGGCCCAAG--CCAGCACCCAACGCACATCATGTGCGCACACCCCCCGGTCC
196 GGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGG-CC
**
16810015 CCCCCGATCGCCGGAACCCTGTTGCCGTCGGTCAGGTTCTCCT-ACGATGGTGTCCC-GACGAAG
258 CCCCCGATCGCCGGAACCC-AATGCCGTCGGTCAGGTTCT-CTGACGATGGTGTCCCAG-CGAAG
* *
16810078 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCTGTCCG
320 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
16810137 GTCCCCCTCT
Statistics
Matches: 1840, Mismatches: 198, Indels: 144
0.84 0.09 0.07
Matches are distributed among these distances:
850 35 0.02
851 130 0.07
852 124 0.07
853 206 0.11
854 250 0.14
856 2 0.00
857 1 0.00
859 2 0.00
860 1 0.00
862 1 0.00
865 2 0.00
867 1 0.00
868 1 0.00
869 124 0.07
870 110 0.06
871 1 0.00
872 1 0.00
874 2 0.00
877 7 0.00
878 2 0.00
879 1 0.00
880 4 0.00
882 2 0.00
883 2 0.00
884 1 0.00
885 5 0.00
886 9 0.00
887 95 0.05
888 709 0.39
889 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCC
CCGATCGCCGGAACCCAATGCCGTCGGTCAGGTTCTCTGACGATGGTGTCCCAGCGAAGAAAAAT
ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAG
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGTTTACCGGCCAGAGGGCGGGATGCGCAAGCAGGGATCGGCCGGGTCCCCC
TCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGA
GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCCTTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGATT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
Found at i:16810939 original size:26 final size:26
Alignment explanation
Indices: 16810887--16810939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16810877 CTGATCTGAT
* *
16810887 CTTAGACTGGGAATGAACTTTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
*
16810913 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
16810939 C
1 C
16810940 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:16811397 original size:35 final size:35
Alignment explanation
Indices: 16811312--16811387 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
16811302 CTCGTTTTTT
16811312 ATTTTTCACG-ATTTTTGAAATTTTTACGGTTCAGG
1 ATTTTT-ACGAATTTTTGAAATTTTTACGGTTCAGG
* *
16811347 ATTTTTACGAATTTTTGAAATTTTTATGGTTCGGG
1 ATTTTTACGAATTTTTGAAATTTTTACGGTTCAGG
16811382 ATTTTT
1 ATTTTT
16811388 TATAATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 3 0.08
35 35 0.92
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (35 bp):
ATTTTTACGAATTTTTGAAATTTTTACGGTTCAGG
Found at i:16812710 original size:26 final size:26
Alignment explanation
Indices: 16812681--16812733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16812671 CTGATCCGAT
*
16812681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16812707 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16812733 C
1 C
16812734 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16813087 original size:878 final size:878
Alignment explanation
Indices: 16810136--16817087 Score: 8604
Period size: 880 Copynumber: 7.9 Consensus size: 878
16810126 CCCTCTGTCC
* * * ** *
16810136 GGTCCCCCTCTGCGTGTTGTCGGTCCTGCTGCCGCAACCCTGGGTCTGGTCTGATCTTAGACTAG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * *
16810201 GAATGAACTCCGTATGCCTAAGCCGACTGACGAAAC-AA-----GTG-G-GCGGGCACTACGTCG
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* * *
16810258 ACCAGAGAGGCGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
131 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16810323 ATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
196 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
16810388 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGG
261 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * *
16810453 TTCGAGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCTCCAAACTTGCTAGACGTGATACTTG
326 TTCG-GGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
16810518 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA-ATTTTTGTGACC
390 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACC
* *
16810582 ATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
16810647 AAATCCTCATTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGAGGCCAATATAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
16810712 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGGCCCCCGGATCGTCGGAACCC
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA---C-C---CCCCC-GATCGTCGGAACCC
* ** ** *
16810777 TAATGCCGTCGATCAGGTTCTCCGATGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACAT
641 TAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACAT
* * * * *
16810842 GCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTT
706 GCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGTC-GGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
16810907 TGCATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCG
769 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
16810972 CTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCG
834 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * * *
16811017 AGTCCCCCTCTACGTGCTGCCTATCCTGCTGCAGTAACCCTCGGTCTGATCCGATCTTAGACTGG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* ** *** * **
16811082 GAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGTGCGGGCGGGCGGGCGGGCACTACGCTA
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* *
16811147 GCCAGAGAGGCGGGATGTGCAAGCTGTGGAAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTT
131 GCCAGAGAGGCGGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * **
16811211 CATATTTTTTCCATGCCAATGCCATTTTTCTATCTTGTAAATTCATACAATGGTCCCTTAAGCCT
195 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
16811276 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAATTTTTACGG
260 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AA-----A---
* *
16811341 TTCAGGATTTTTACGAATTTTTGAAATTTTTATGGTTCGGGATTTTTTATAATTTTTTTAGAAGG
316 --C----TTTTTAC-------------------GGTTCGGG-TTTTTTAAAATTTTTTCAGAAGG
* * *
16811406 AATTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTAGGCATGCACAAAAAAATTCA
355 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
16811471 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACT
420 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
16811536 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCTA
485 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * **
16811601 GGTTTGATGAGGGAAAAGGGGCCAATATAAGGGCCAAGAATTAGCACCCATCGCACATCATGTGC
550 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
16811666 GTACACCTCCCCCGATCG-CAGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGACGGTGTCCC
615 GCACACC-CCCCCGATCGTC-GGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCC
** * *
16811730 GACGAAGAAAAATGTGGCACCAGCACATGGCCGAGCCAAGCATGTGCTGCCGTAAGCCTCGGTCC
678 GGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGT-C
* * * *
16811795 GGTCTGATCTTAGACTGGGAATGAACTCCCTATGCTTATACTAGGAATGAACTTCGTATGCCTAA
741 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
16811860 GTCAACCCATGAAATGAGCATACGGGCGCTCAGTCGACCGGAGGGGTGGGATGGGCAAGCCGGGG
806 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGG
*
16811925 ATCGGTCG
871 ATCGATCG
* * * * *
16811933 GGCCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * * ** * * * *
16811998 GAATAAACTCCGTATACCTAAGCCAACCAACGAAACGAGTGGGC-AGCGGGAGGGCACTACGCTG
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* * * *
16812062 GCCAAAGAGGTGGGATGCGCAAGCCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAGATCTT
131 GCCAGAGAGGCGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
16812127 CATATTTCAGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
195 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
16812192 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATATTTCACGATTTTTGAAA-TTTTTACG
260 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * *
16812256 GTTTGGGTTTTTTTAAATTTTTTCAGAACGAGTTTTGGCCCCAAAGTTGGTAGACATGATCCTTG
325 GTTCGGGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
16812321 TATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCA
390 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
16812386 TTTGAAAAAAATGTCCCCATTTCAAACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCA
455 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
16812451 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCC
520 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
16812516 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGATCGTCGGAACCCCAATGCCGT
585 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGTCGGAACCCTAATGCCGT
* *
16812580 CGGTCAGGTTCTCCGGTGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAAGCC
650 CGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * *
16812645 TAGCATGTGCTGCCGTAACCATCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
715 CAGCATGTGCTGCCGTAACC-TCGGTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* **
16812710 AGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGG
778 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
16812775 CCAGAGTGGCGGGATTCGTAAGCTGAGGATCGATCG
843 CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
16812811 GGTCCCCCTCTGCGTGTTGTCGATCCTGCTGCTGCAACCCTCAGTCTGGGCCAATCCTAGACTGG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * *
16812876 GAATGAACTTCATATGCCTAAGCCAATCGATGAAACAAACGGGCGGGCAAGCGAGCACTACGCCG
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* * * *
16812941 GCCTGAGAGGCGAGATACAG-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTC
131 GCCAGAGAGGCGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
16813005 CATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
195 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* **
16813070 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTTTTGAAACTTTTTATT
260 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
*
16813135 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
325 GTTCGGG-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
16813200 GTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGCTGAC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGAC
*
16813264 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTTAAATCT
453 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
16813329 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATACGGGGCCAATATAAGGG
518 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
16813394 CCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCATCGGAAC
583 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---------CCCCCCCGATCGTCGGAAC
* * ** ** *
16813459 CCTAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGTTCCGGTGAAGAAAAATACGATAACAGCAC
639 CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCAC
** * *
16813524 ATGCTTGAGCCCAGCATGTGCTACCGCAACC-C--TC-G---G----T---CT-GG--T----T-
704 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCTCGGTCGGTCTGATCTTAGACTGGGAATGAACTC
16813567 CG-AT-CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
769 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
16813629 TTCAACCGGCCAGAGGGGTGGGATGCGCATA-CCGGGGATCGATCG
834 CTCAGCCGGCCAGAGGGGTGGGATGCGCA-AGCCGGGGATCGATCG
* ** *
16813674 GGTCCCCCTCTGTGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGATCTC-ATCTTAGACTA
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTC-CGATCTTAGACTA
* * *
16813738 GGAATGGACTCCGTATGCCTAAGCCAA-C--TGAAA-AAACGAGCGGGCGGGCGGGCACTACGCC
65 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCC
*
16813799 GGCCAGAGAGGCGGGATGCGCAAACCGTGGATCGATAGGGTGGTCA-GTGGGTTTAGGCACATCT
130 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCT
* * * *
16813863 TCATATTTCTACCGTACCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCGTAAGCC
194 TCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
16813928 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT-TTTTTTTTACGATTTTTGAAACTTTTTAC
259 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* *
16813992 GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAAC-T--T-GACGTGATCCT
324 GGTTCG-GGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-
* * *
16814053 TTGTATTTTTTTTGGCAAGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
387 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
16814118 CAATTTGAAAAAAGTGTCCCTATTCCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
452 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
16814183 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
517 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * ** *
16814248 GACAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGAAAC
582 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA------C--CCCCCCGATCGTCGGAAC
* ** * *
16814313 CCTAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGACACCAGCAC
639 CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCAC
*
16814378 ATGCCCGAGCCGAGCATGT-CTGCCGTAACC-C--TC-G---G---TT---C--GG--T---CT-
704 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCTCGGTCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
16814421 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAATGAGCGTTCGAGTG
769 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
16814483 CTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCG
834 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* * * * ** *** *
16814528 GGTCCCCCTTTACGTGCTGCTGATCCTGCTACCGCAACCCTTGGTCCAATCTGATCTTAGACTAG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * * *
16814593 GAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCAAGCGGGCACTACGCCG
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* * *
16814658 GCCA-AGAGGCAGGATGCGCAAGTCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTC
131 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
16814722 ATATTTCTGCCATGCCAATGCCATTTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCT
196 ATATTTCTGCCATGCCAATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
16814787 TCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
260 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * * * * *
16814852 ATTCAGGATTTTTTAAAATTTTCTCAAAACGATTTTTGGACCCAAACTTGGTAGACGTGATCCCT
325 GTTC-GGGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
16814917 GTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACT
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
16814982 ATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
16815047 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
16815112 CAAGTACCAGCACCCATCGCACATCCTGTGCGCACATCCCCCCCGGCCCCCCCGATCG-CTGGAA
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA----------CCCCCCCGATCGTC-GGAA
* * *
16815176 CCCTAATACCGTCGGTCAGGTTCTTCGGGTGATGGTGTCCCGGTGAAGAAAAATGCT-GCACCAG
638 CCCTAATGCCGTCGGTCAGGTTC-TCCGGCGATGGTGTCCCGGTGAAGAAAAATG-TGGCACCAG
* * * * *
16815240 CACATTCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCTGATTTTAGATTGGGAATG
701 CACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGT-CGGTCTGATCTTAGACTGGGAATG
*
16815305 AACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
764 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
16815370 GGGCGCTCAGCCAGCTAGAGGGGTGGGATGCGCAAGCTGGGGATCGACCG
829 GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* * * * ** * *
16815420 GGTCCCTCTCTACGTGCTGCCGATCTTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGG
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * *
16815485 GAATGAACTCCGTATGCCTAAGCCAACCGATG----AAATGAGC--G-G-GCGGGCACTACGTCG
66 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
* * * *
16815542 GCCAGAGAAGCGGGATGCACAAGCCGTGGATGGATAGGGTGATAGGTGGGTTTAGGCACATCTTC
131 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** *
16815607 ATATTTCTGCTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
196 ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * **
16815672 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACAT
261 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
*
16815737 TTCGGGATTTTTTAAAATTTTTTCAG-AGAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
326 TTCGGG-TTTTTTAAAATTTTTTCAGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
16815801 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATCTTGTGACC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
16815866 ATTTCAAAAAGGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
16815931 AAATGCTCTTTCAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
16815996 CAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCAGCGGAATC
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-G---AT-CG-T---CGGAA-C
* * * ** *
16816061 CC-AATGCCGCCTGTCAGGTTCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCCC
639 CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCAC
* * * *
16816125 ATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCTGTCCGGT-TCGATCTTAGACTGGGAATGAA
704 ATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGT-CGGTCT-GATCTTAGACTGGGAATGAA
* * ** * *
16816189 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTTAGTCAACCCATAAAACGAGTGTGTGG
766 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
16816254 GCGCTCAGCCAGCCAGAGGGGTGGAATGCGCAAGCCGAGGATCAACCG
831 GCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* * * ** * * *
16816302 GGTTCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTTGTC-CGACTTGATCTTAGACTA
1 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTC-CGATCTTAGACTA
* * * * *
16816366 AGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCTCTACGCC
65 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCC
** *
16816431 GGAAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCT
130 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
16816496 CATATTTCTGCCGTGCCGATGCCATTTTTCTGGCTTCTAAATTCATACAATGGTCCTTTAAGCCT
195 CATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
16816561 TCATGTGAAGTGTCATGGCCAA-ACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
260 TCATGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* *
16816625 GGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCT
324 GGTTCGGG-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
16816690 TGTATTTTT-TAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
388 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
16816754 TATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
453 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
16816819 CAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
518 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
16816884 CCAAGTACCAGCACCCATCGCACATCATGTGCTCACATCCCCCCCGGCCCCACCGATCGCTGGAA
583 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC-G----ATCG-T--C-GGAA
* * * **
16816949 CCCTAATGTCGCCGGTCAAGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCA
638 CCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCA
* * ** * *
16817014 CATTCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAGGAA
703 CATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGTC-GGTCTGATCTTAGACTGGGAATGAA
16817079 CTCCGTATG
766 CTCCGTATG
16817088 TCGTAACGGT
Statistics
Matches: 5335, Mismatches: 576, Indels: 311
0.86 0.09 0.05
Matches are distributed among these distances:
852 5 0.00
853 40 0.01
854 252 0.05
855 217 0.04
856 5 0.00
857 79 0.01
858 168 0.03
859 241 0.05
860 8 0.00
862 224 0.04
863 160 0.03
864 55 0.01
865 54 0.01
866 16 0.00
867 3 0.00
868 1 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 2 0.00
874 9 0.00
875 2 0.00
877 4 0.00
878 468 0.09
879 50 0.01
880 527 0.10
881 99 0.02
882 272 0.05
883 25 0.00
884 389 0.07
885 75 0.01
886 7 0.00
887 2 0.00
888 9 0.00
889 396 0.07
890 488 0.09
891 11 0.00
892 176 0.03
895 1 0.00
900 8 0.00
904 7 0.00
910 1 0.00
915 42 0.01
916 456 0.09
917 6 0.00
919 1 0.00
920 1 0.00
922 1 0.00
923 267 0.05
924 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (878 bp):
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGAGCGGGCACTACGCCG
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
TTCGGGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGTCGGAACCCTAATGCCGTC
GGTCAGGTTCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
AGCATGTGCTGCCGTAACCTCGGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
Found at i:16815327 original size:26 final size:26
Alignment explanation
Indices: 16815291--16815342 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16815281 CAGTCTGATT
*
16815291 TTAGATTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
*
16815317 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
16815343 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:16816201 original size:26 final size:27
Alignment explanation
Indices: 16816172--16816229 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
16816162 CCGGTTCGAT
*
16816172 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCATATGC
16816198 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
16816225 CTTAG
1 CTTAG
16816230 TCAACCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:16818089 original size:16 final size:16
Alignment explanation
Indices: 16818065--16818127 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
16818055 GGATTTTTTT
*
16818065 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16818081 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* * *
16818098 GGGGTTTTCGATTT-A
1 AGGATTTTGGATTTCA
16818113 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16818128 TTAGGGGTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
16 25 0.69
17 11 0.31
ACGTcount: A:0.19, C:0.06, G:0.30, T:0.44
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16818135 original size:33 final size:33
Alignment explanation
Indices: 16818074--16818138 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
16818064 TAGGACTTTG
*
16818074 GATTTCAAGGATTTTGGATTTCGGGGGGTTTTC
1 GATTTCAAGGATTTTGGATTTCGAGGGGTTTTC
**
16818107 GATTT-AATGGATTTTGGATTTTTAGGGGTTTT
1 GATTTCAA-GGATTTTGGATTTCGAGGGGTTTT
16818139 AGAATCCTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.17, C:0.05, G:0.31, T:0.48
Consensus pattern (33 bp):
GATTTCAAGGATTTTGGATTTCGAGGGGTTTTC
Found at i:16818708 original size:38 final size:38
Alignment explanation
Indices: 16818636--16818708 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
16818626 GGTCTGATCG
* * ***
16818636 GTTCGACGGTTGGATCGGCGGTTCAGGTGGTCTGACCT
1 GTTCGACGGTCGGATCGGCGGTCCAGGCAATCTGACCT
*
16818674 GTTCGACGGTCGGATCGGCGGTCCGGGCAATCTGA
1 GTTCGACGGTCGGATCGGCGGTCCAGGCAATCTGA
16818709 TCGGTTCAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 29 1.00
ACGTcount: A:0.12, C:0.23, G:0.40, T:0.25
Consensus pattern (38 bp):
GTTCGACGGTCGGATCGGCGGTCCAGGCAATCTGACCT
Found at i:16819334 original size:18 final size:18
Alignment explanation
Indices: 16819293--16819339 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
16819283 TATTTTTTTA
* *
16819293 TTTTTGTTTCTGTTTTGG
1 TTTTTTTTTTTGTTTTGG
16819311 TTTTTTTTTTTGTTTTGG
1 TTTTTTTTTTTGTTTTGG
16819329 TTTTTTTTTTT
1 TTTTTTTTTTT
16819340 ATGTCGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTTGTTTTGG
Found at i:16819520 original size:12 final size:12
Alignment explanation
Indices: 16819505--16819584 Score: 63
Period size: 12 Copynumber: 6.7 Consensus size: 12
16819495 ATAGGGTGCC
*
16819505 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
16819517 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
16819529 TGGTCGGAG-AGT
1 TGGTCGG-GTAAT
*
16819541 TGGTTGGGTAAT
1 TGGTCGGGTAAT
* *
16819553 TGGTCGGGGAGT
1 TGGTCGGGTAAT
* *
16819565 TGGTTGGATAAT
1 TGGTCGGGTAAT
16819577 TGGTCGGG
1 TGGTCGGG
16819585 GCAGTTCGGC
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
11 1 0.02
12 47 0.96
13 1 0.02
ACGTcount: A:0.16, C:0.05, G:0.46, T:0.33
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:16819585 original size:24 final size:23
Alignment explanation
Indices: 16819505--16819590 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 23
16819495 ATAGGGTGCC
* *
16819505 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGGGAGTTGGT-TGGTAAT
*
16819529 TGGTCGGAGAGTTGGTTGGGTAAT
1 TGGTCGGGGAGTTGGTT-GGTAAT
16819553 TGGTCGGGGAGTTGGTTGGATAAT
1 TGGTCGGGGAGTTGGTTGG-TAAT
16819577 TGGTCGGGGCAGTT
1 TGGTCGGGG-AGTT
16819591 CGGCGTCGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
23 2 0.04
24 49 0.89
25 4 0.07
ACGTcount: A:0.16, C:0.06, G:0.45, T:0.33
Consensus pattern (23 bp):
TGGTCGGGGAGTTGGTTGGTAAT
Found at i:16819646 original size:12 final size:12
Alignment explanation
Indices: 16819631--16819675 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
16819621 TTATTTTCGT
16819631 TTTGTTTTTTTG
1 TTTGTTTTTTTG
*
16819643 TTTGTTTTTTTTT
1 TTTG-TTTTTTTG
*
16819656 TTTATTTTTTTG
1 TTTGTTTTTTTG
16819668 TTTGTTTT
1 TTTGTTTT
16819676 GTTAAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (12 bp):
TTTGTTTTTTTG
Found at i:16820253 original size:49 final size:49
Alignment explanation
Indices: 16819850--16820378 Score: 656
Period size: 49 Copynumber: 10.9 Consensus size: 49
16819840 ACAGAAAAGG
* *
16819850 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAAATCTC-T-TGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
* *
16819897 GCTCCTCTCAATAGAGGCTCCACGACTTTAAAAATCTCATCTG-AAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
* ** *
16819945 GCTTCTCTCAGGAGAGGCTCAACAACTTT-AAAATCTCATCTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
16819993 GCTCCTCTCAACAGAGGCTCCACAAC--T--AAATCTCATCTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
16820038 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATCTCATCTTGAAAAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TG---AAAAAA
* *
16820090 GCTCCTCTCAGCAAAGGCTCCACAACTTTAAAAATTCTC-TCTTGAAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGAAAAAA
* * * * *
16820140 ACTTCTCTTAGCAGAGGTTCCACAACTTTAAAAATCTCATCTG-AAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
*
16820188 GCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATTCTC-TCTTG-AAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TGAAAAAA
* * *
16820237 GCTCCTCTCAACAGAGGCTCGACAACTTTAAAATTCTCATCTTG-GAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TGAAAAAA
* *
16820286 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCTCATCTG-AAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATCTCATCTGAAAAAA
*
16820335 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCTCATCTG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATCTCATCTG
16820379 TTTTCAAATT
Statistics
Matches: 432, Mismatches: 33, Indels: 32
0.87 0.07 0.06
Matches are distributed among these distances:
45 44 0.10
46 1 0.00
47 48 0.11
48 106 0.25
49 142 0.33
50 45 0.10
52 33 0.08
53 9 0.02
54 4 0.01
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAA
Found at i:16831064 original size:16 final size:16
Alignment explanation
Indices: 16831003--16831065 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
16830993 GGATATTTTT
*
16831003 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
16831019 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* * *
16831036 GGGGTTTTTGATTT-A
1 AGGATTTTGGATTTCA
16831051 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
16831066 TTAGGGGTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
16 25 0.69
17 11 0.31
ACGTcount: A:0.19, C:0.05, G:0.30, T:0.46
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:16831073 original size:33 final size:33
Alignment explanation
Indices: 16831012--16831076 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
16831002 TAGGACTTTG
*
16831012 GATTTCAAGGATTTTGGATTTCGGGGGGTTTTT
1 GATTTCAAGGATTTTGGATTTCGAGGGGTTTTT
**
16831045 GATTT-AATGGATTTTGGATTTTTAGGGGTTTT
1 GATTTCAA-GGATTTTGGATTTCGAGGGGTTTT
16831077 AGAATCCTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.17, C:0.03, G:0.31, T:0.49
Consensus pattern (33 bp):
GATTTCAAGGATTTTGGATTTCGAGGGGTTTTT
Found at i:16831637 original size:26 final size:26
Alignment explanation
Indices: 16831586--16831639 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16831576 GGCGGTTGGA
* *
16831586 TCGACGGTTCGGGCAATCTGGCCGGT
1 TCGACGGTCCGGGCAATCTGACCGGT
*
16831612 TCGACGGTCCGGGCAATCTGATCGGT
1 TCGACGGTCCGGGCAATCTGACCGGT
16831638 TC
1 TC
16831640 AATCCGGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.28, G:0.35, T:0.24
Consensus pattern (26 bp):
TCGACGGTCCGGGCAATCTGACCGGT
Found at i:16832379 original size:12 final size:12
Alignment explanation
Indices: 16832364--16832419 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
16832354 ATAGGGTGGC
*
16832364 TGGTCGGGTAGT
1 TGGTCGGGTAAT
**
16832376 TGGTAAGGTAAT
1 TGGTCGGGTAAT
*
16832388 TGGTCAGAG-AAT
1 TGGTC-GGGTAAT
*
16832400 TGGTTGGGTAAT
1 TGGTCGGGTAAT
16832412 TGGTCGGG
1 TGGTCGGG
16832420 GCAGTTCGGC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
11 2 0.06
12 30 0.91
13 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.43, T:0.32
Consensus pattern (12 bp):
TGGTCGGGTAAT
Found at i:16832391 original size:24 final size:23
Alignment explanation
Indices: 16832364--16832419 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
16832354 ATAGGGTGGC
*
16832364 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGG-AATTGGTAAGGTAAT
* **
16832388 TGGTCAGAGAATTGGTTGGGTAAT
1 TGGTC-GGGAATTGGTAAGGTAAT
16832412 TGGTCGGG
1 TGGTCGGG
16832420 GCAGTTCGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.08
24 22 0.85
25 2 0.08
ACGTcount: A:0.20, C:0.05, G:0.43, T:0.32
Consensus pattern (23 bp):
TGGTCGGGAATTGGTAAGGTAAT
Found at i:16833462 original size:26 final size:26
Alignment explanation
Indices: 16833426--16833478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16833416 CCAGTCCAAT
16833426 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
16833452 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
16833478 C
1 C
16833479 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:16834344 original size:26 final size:26
Alignment explanation
Indices: 16834315--16834365 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16834305 CGGTCTGATC
16834315 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
16834341 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16834366 CCTAAGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:16834894 original size:884 final size:885
Alignment explanation
Indices: 16832555--16836987 Score: 6201
Period size: 885 Copynumber: 5.0 Consensus size: 885
16832545 GGTGTCTACA
* * * * *
16832555 CCGTATGCTTAGACAGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGAGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * *
16832620 GCTCAGCTGGCTAGAGGGGTGGGATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * * * *
16832685 -TCGATCTTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGA-TTGGAAATGAACTCCGTATGC
131 CT-GATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGG-AATGAACTCCGTATGC
*
16832748 CTAAGCCAACCAACGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
194 CTAAGCCAACCGACGAAACGAGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* *
16832813 CGCAAGCCGTGGATCAATAGGGT-GACAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCC
255 CGCAAGCCGTGGATCGATAGGGTGGA-AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* *
16832877 AATGCCATTTTTTTTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
319 AATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* ** * *
16832942 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAA
384 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
*
16833007 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
449 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
16833072 CACAAAAAATTTCAGCTAAAAAATCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTTC
514 CACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
16833137 TCATTTAAGGCAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
16833202 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
644 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
16833267 CGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGGT-GGTCA
709 CGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCC-GTCGGTCA
* *
16833331 GGTTCTCTGACGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
772 GGTTCTCTGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
16833396 GTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAAAGAACT
837 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
16833445 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * * * * * * *
16833510 GCTCAGTCGGCCAGAGGGACGAGATGCGTAAGCCGGAGATTGGTCGAGTCGCCCTCTGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * * * * * *
16833575 CCGATCTTGCTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGACT
131 CTGATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * *
16833640 AAGCCAACCGACGAAACGAACGGTCGGGCGGGCGGGCACTACGCCAGCCAGAAAGGCAGGATGCG
196 AAGCCAACCGACGAAACG-A--G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
* *
16833705 CAAGCCGTGGATCGATAGGGTGGTA-GTCGGGTTTAGGCACATCTTCATATTTCTGCCATACCAA
257 CAAGCCGTGGATCGATAGGGTGGAAGGT-GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
*
16833769 TGCCATTTTTCTGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
321 TGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *** *
16833834 AAGATGACTCGTTTTTTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGATTTTTTAAAAA
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAT
* *
16833899 TTTTTCAGAAAGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
451 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
16833964 CAAAACAA-TTCATCTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCC
516 CAAAA-AATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
16834028 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
16834093 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATC
645 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
16834158 GCACATCATATGCGCACA-CCCCCGGCCCCCCCGATCGCTGGAACCCTAATGTCGTCGATCAGGT
710 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
16834222 TCTTTGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGGCCAGCATGTG
775 TCTCTGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
16834287 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
840 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
16834333 CCGTATGTTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCAATGAAACGAGCGTGCGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * **
16834398 GCTCAACCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * * *
16834463 CTGATCCTGCTACCACAACACTCGGTCTGGTTCGATCTTAGACTAGGAATCAACTCCGTATGCCT
131 CTGATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCT
* ** * ** *
16834528 AAGCCAAACGGTGAAACGAGCGGGCGGGCGGGCGCTACATCGGCAAGAGAGGCGGGATGCGCAAG
196 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
16834593 CCGTGGATCGATAGGGTGGAAAGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
261 CCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
16834658 TTTTTCTAGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
326 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
16834723 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA-TTTTT
* * *
16834788 TC-GAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAA
455 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16834852 AAATTTCAGCTCAAAAA-TCGAAGTTTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATT
520 AAATTTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16834916 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16834980 AGTTCTCGAGGTTTGATGAGGGATAGGGTGCTAATATAAGGGCCAAGTACCAGCACCCATCTCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16835045 ATCATGTGCGCACACCCCCTCGGCCCCCCCGATTGCCGGAACCCCAATACCGCCGGTCAGGTTCT
714 ATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * *
16835110 CCAGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGCTA
778 CTGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
16835175 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
843 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
16835218 CTGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGTGGGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * * *
16835283 GCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGGGTGCCG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * ** * * * * *
16835348 CAGATCCTGCTTTCGTAACCCTCAGTCCGG-TCAAATCTTAGACTGGGAATGAACTCCGTATGCC
131 CTGATCTTGCTACCGCAACCCTCGGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCC
* * * * *
16835412 TAAGCCAACTGATGAAACGAACGGGCGGGCAGGCACTACGCCGACCAGAGAGGCGGGATGCGCAA
195 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * ** *
16835477 ACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTGCCCTGCCAATGCC
260 GCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
16835542 ATTTTTTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCTTGTGAAGTTTCATGGCAAGA
325 ATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
16835607 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAAGTTTTTTTAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGA-TTTTTTAAAATTTT
* * *
16835671 TTCAGAAGGGGTTTTGGCCCCAAACATGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAA
454 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
16835736 AAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATT
519 AAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
16835801 TCAAACACTTTAATGGCTCCTGGCAGCAAACCTGAAAAATCTCAAATGCCCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16835866 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
16835931 ATCATGTGTGCACACCCCCCCGGCACCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAAGTTC
714 ATCATGTGCGCACA-CCCCCCGGC-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
16835996 TCCGGCGATGGCGTCCCGGCGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCTAGCATGTGCT
777 TCTGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
16836061 GCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAGTGACCT
842 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
16836105 CCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGC
1 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * * ** *
16836170 TCTCAGCCTGCCAGAGGGGCGGGATGCGAAAGTCGGGGATATG-TTAGGTCCCCCTCTACGTGCT
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-CGATCGGGTCCCCCTCTGCGTGCT
* * * *
16836234 G-TCGATCTTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGC
130 GCT-GATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGC
* *
16836298 CTAAGCCAACCGACGGAACGAGCGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATG
194 CTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * * *
16836363 CGTAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCA
255 CGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
16836428 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
320 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * *
16836493 CAAGACGACTCATTTTTTATTTTTCACGA-TTTTGAAA-TGTTTTACGGTTTTGGATTTTTTAAA
385 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTTGGGATTTTTTAAA
* * *
16836556 ATTATTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATGTTTGTTGGCATG
449 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
16836621 CACAAAAAAATTT-AGCTAAAAACTCAAAGTGTACAAG----T-TGACCAGTTGAAAAAAGTGTC
514 CAC-AAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
16836680 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
578 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
16836745 GGTG-GTAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGCACCAGCACCC
643 GGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
16836809 ATCGTACATCATGTACGCACACCCCCTGG----CCC--TC-CC-GATCCCCAATGTCGTCGATCA
707 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* ** * *
16836866 AGTTCTCTGATGATGGTGTCCTGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
772 GGTTCTCTGGCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
16836931 GTGCTACCTCAACCCTCGGTTCGATCCGATCTTAGATTGGGAATGAACT
837 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
16836980 CCGTATGC
1 CCGTATGC
16836988 CTAACCCTTC
Statistics
Matches: 3159, Mismatches: 350, Indels: 83
0.88 0.10 0.02
Matches are distributed among these distances:
875 120 0.04
876 2 0.00
877 2 0.00
879 3 0.00
883 82 0.03
884 403 0.13
885 854 0.27
886 86 0.03
887 323 0.10
888 317 0.10
889 7 0.00
890 754 0.24
891 199 0.06
892 1 0.00
893 1 0.00
894 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
CTGATCTTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
CCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
GCGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
Found at i:16835228 original size:26 final size:26
Alignment explanation
Indices: 16835199--16835251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835189 CCGGTCTGAT
* *
16835199 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16835225 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16835251 C
1 C
16835252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16836115 original size:26 final size:26
Alignment explanation
Indices: 16836086--16836138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16836076 CCGGTCCGAT
* * *
16836086 CTTAGACTGGGAGTGACCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16836112 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16836138 C
1 C
16836139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16837541 original size:26 final size:26
Alignment explanation
Indices: 16837491--16837543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16837481 CCGGTCTGAT
* **
16837491 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16837517 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16837543 C
1 C
16837544 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16838388 original size:26 final size:26
Alignment explanation
Indices: 16838358--16838410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16838348 CCGGTCCGAT
16838358 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16838384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16838410 C
1 C
16838411 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16839826 original size:864 final size:862
Alignment explanation
Indices: 16836993--16843697 Score: 6738
Period size: 864 Copynumber: 7.6 Consensus size: 862
16836983 TATGCCTAAC
* *
16836993 CCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * **
16837058 ACGGTTTGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
16837122 CTTGTA------TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTC
131 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
16837181 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * * **
16837246 CACAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATAAGAGATAGGGGATCAATATAAG
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
16837311 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCTCGATCGTGGG
326 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGG
** * * * *
16837376 AACCCCAATGCCACCGGTCAGGTTCTCCAGAGATGGTGTCCCGGTAAAGAAAAATATGGCACCAG
390 AACCCCAATG-CGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAG
* * ** *
16837441 CACATGCCCGAACCCAGCACGTGCTGTCATAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATG
454 CACATG-CCGAGCCCAGCATGTGCTACCACAACC--C--T-C-G---G----T---CT-GG--T-
* * *
16837506 AACTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
498 --C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * * * *
16837571 AGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC-GCGGATCGGTCGGGTCCCCTTCTGCA
557 AGGCGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGATCGGGTCCCCCTCTGCG
* * * * * * * *
16837635 TGCTGTCGATCCTACTACCGCAACCCTCAGTCCAGTTCGATCTTAGACTGTGAATGAACTTCATA
621 TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * ** * *
16837700 TGCCTAAGCCAACTGACAAAACGAGCGGGC-AACAGGCGGGCATTACGTCGGCCAGAGAGGCGGG
686 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGG
* * *
16837764 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTG
751 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
16837829 CCAATGCCATTTTTCTAGCTTGTAAATTCATACAGTGGTCCCTTAAG
816 CCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
16837876 CCTTCATGCGAAGTTTCATGGCAAGATGACTGGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
16837941 ACGGTTCGAGAGTTTTTAAAATTTTTTCAGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
16838006 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT-AACAAGATTTTGTG
131 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
16838070 ACCATTTGAAAAAAGTGTCCCCTTTTCAGTCACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** *
16838135 CTCAAATG-TCTTTAAGGGGGTGTGAGTTCTTGTCGTTTGATGAGGGATAGGGGGCCAAAATAAG
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
16838199 GGCTAAGTGCCAGCACCCAACG-ACATCATGTGCG-ACA------C-GCCCCCCTGATCGTTC-G
326 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-TCGG
* * * * * * * ***
16838254 AA---TAATACGTCGATTAGGTTCTCGA-TGATAGTGT-CCGAT-AAG-AAAATAACTTTACCAG
390 AACCCCAATGCGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAAT-ACGGCACCAG
** * * ** ** *
16838312 CACATGCCCGAAGCAAAGTATGTACTGGCACTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
454 CACATG-CCG-AGCCCAGCATGTGCT---AC-CA---C-AACC---C-T---C--GGTCTG--GT
* * ** * *
16838377 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACAAGCATGCGGGC
498 CC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGC
* * * * * * *
16838442 GCTCAGCTGGCCAGAGGGGC-GGATGCGTAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTA
561 GCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * *** * * *
16838506 CCGAT-CTGCTGCCACAACCCTCAAACCGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCT
626 TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
*
16838570 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGATGGGCGGGCACTACG-CTTGCCAGAGAGG
691 AAGCCAACCGACGAAACGA----GCGGGCGGGC----GGGCGGGCACTACGTC-GGCCAGAGAGG
* * * ** *
16838634 AGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGTGTTTAGAAACATTTTCATATTTCTGC
747 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
16838699 CATGCCAATGCCAGTTTTT-TGCCTTGTAAATTCATACAATGGTCCCTTAAG
812 CATGCCAATGCCA-TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
16838750 CCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
16838815 ACGGTTCGGGATTTTTTAAAAATTTTTCAAAAGGAGTTTTTGCCCCAAACTTGGTAGATGTGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
** * *
16838880 CTTGTATTTTTTTTTTCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
131 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
16838945 ACAATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
16839010 CTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAA-
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
16839074 GGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCCGGCCCCCCCGATTGCCGG
326 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGG
* * * * *
16839139 AACCCCAATGTCGCCGGTCAGGTTGTCCAGTGGTGGTGTCCCGACGAAGAAAAATACGGCACCAG
390 AACCCCAATG-CGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAG
* *
16839204 CACATAACCGAGCCTAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
454 CACAT-GCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* ** *
16839269 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTGCAGGCGCTAAGTTGGCAAGAGGGGCGG
518 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGCCGGCCAGAGGGGCGG
* * * *
16839334 GATGCGCAAGCCAGGGATCGGTCGGGTCCCCCACTACGTGCTGTCGATCTTGCTGCCGCAACCCT
583 GATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * * * * *
16839399 TGTTCTGGTCAGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCA
648 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
16839463 GGCGGGCGGGCGGGCACTACGTCAGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTG
713 GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
16839528 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAAT
778 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAAT
16839593 TCATACAATGGTCCCTTAAG
843 TCATACAATGGTCCCTTAAG
* * *
16839613 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTTATTTTTCACTATTTTTGAAACTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTT
*
16839678 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGAT
65 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
16839743 CCTTGTATTATTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
130 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
16839808 GACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
195 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
16839873 TCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
260 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * **
16839938 GGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCCGACCCCAGCGATCGTCGG
325 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
* * * ***
16840003 AACCCCAATGCTGTAGGTCAGGTTCTCC-GACGATGGTGTCTCGACGAAGAAAAATGTTGCACCA
390 AACCCCAATGC-GTCGGTCAGGTTCTCCAG-CGATGGTGTCCCGATGAAGAAAAATACGGCACCA
* * ** * * *
16840067 GCACATGCTCGAGCCCAACATGTGCTGCTGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAAT
453 GCACATGC-CGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* * *
16840132 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGGCTTAA-CCGGCTAGAGGGGC
517 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGC-TAAGCCGGCCAGAGGGGC
* * * * *
16840195 GCGATGCGCATGCC-GTGGATCGACCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTGCCGCAAC
581 GGGATGCGCAAGCCAG-GGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * * *
16840259 CCTCGGTCCGGCCCGATATTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA
645 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
16840324 GCGGGCGGACGGGAGTGCACTATGTCGGCCAGAGAGGCGGGGTACGCAAACCGTGGATCGATAGG
710 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * *
16840389 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCGTGCCAATGCCATTTTTTTGGCTTGTA
775 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTA
*
16840454 AATTCATACAATGGTCCCTTCAG
840 AATTCATACAATGGTCCCTTAAG
* *
16840477 CCTTCATGTGAAGTTTAATGGCAATACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
*** * * * *
16840542 ACGGTTCAAAATTTTTTAAAACTTTTTCAGAAGGAATTTTGTCCCCAAAC-T--T-GACATGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
16840603 CGTGTGT-TTTTCTTTTGGCATGCATAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
131 C-T-TGTATTTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
16840667 GTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAA
193 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
16840732 AACCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAAGGGGCCAATAT
258 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
16840797 AAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACA------C--CCCCCCCGATCG-C
323 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
* * * * *
16840853 TGGAACCCCAATGCTGTCAGTCAGGTTCTCC-GACGATGGTGTCGCGGTGAAGAAAAATGCCGCA
388 -GGAACCCCAATGC-GTCGGTCAGGTTCTCCAG-CGATGGTGTCCCGATGAAGAAAAATACGGCA
* * * *
16840917 CCAGCACGTGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGG
450 CCAGCACATG-CCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* *
16840982 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
514 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGCCGGCCAGAGGG
** * * *
16841047 GCGGGATGCGCAAGCCAGGGATCGATTAGGTCCCCCTCTGCTTGCTGTCGATCTTGCTGCCACAA
579 GCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAA
* * * * *
16841112 CCCTCGGTCCGGTCCGATCTTAGACTAGGAATAAACTTCGTATACCAAAGCCAACCGACGAAACG
644 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * ** *
16841177 AGCGAGCGGGTC-GGTGGGCACTACGTCGGCCAGAGAGGCAGGATACGCAAGCCAAGCATCGATA
709 AGCGGGCGGG-CGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * *
16841241 AGGTGGTAGGTGGGTTTAGGAAAATCTTCATATTTCTGCCATGCCAATGCCATTTTTTCTGGCTT
773 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTTCTGGCTT
16841306 GTAAATTCATACAATGGTCCCTTAAG
837 GTAAATTCATACAATGGTCCCTTAAG
* * * * *
16841332 CCTTCATTTAAAGTTTCATGGCACGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
16841397 ACGGTTCGGGATTTTTTTAAATTTTTTCAAAAGCAGTTTTGGCCCGAAACTTGGTAGACGTGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
16841462 CTTGTA-TTTTTTTAGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTG
131 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
16841526 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
16841591 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAG
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** * * *
16841655 GGCCAAGTACCAGCACCCATCGTTCATCATGTGCGCACA-CCCCCCGGCCCTGCCGGATCGCCGG
326 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCCGATCGTCGG
* * ** * *
16841719 AACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGTGACACTAG
390 AACCCCAATGC-GTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAG
** * * *
16841784 CACATGCCGGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATG
454 CACATGCC-GAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* * * * *
16841849 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCGTATGC
518 AACTCCGTATGCCTA-A----G--TCAAC-CC--A--C---GA-----AATGAGCGT--GCAGGC
*** * * * *
16841913 -CTAAGTCAACCCATGAAACGAGCATGCGTATGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGT
561 GCTAAG-CCGGCCA-G--AGGGGC--G-GGATG--C-GCAAGCC--A-----GGGAT-CG--A-T
****** * * *** * * * *
16841977 CGGGGATTGGTC-GGGTCCCCCCTGCGTGCTGCCGATCCTATTATCGCAACCCTCGGTCCGATCC
605 CGGGTCCCCCTCTGCGTGCTGTC-G-ATCCTG-C--TGC------CGCAACCCTCGGTCCGGTCC
* * * * *
16842041 GATCTTAGACTGGGAATGAACTCTGCATGCTTAAGTCAACTGACGAAACGAGCGGGCACTACGCC
659 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-----CG--
** * * * * ** * *
16842106 ATCCGACGAACGGC-CAACCGAC-GAAATGAGTGGGCGGACGAGTGTGCACTACTTCGTCCAGAG
717 GGCGGGCG---GGCACTA-CGTCGGCCA-GAG-AGGCGG--GA-TGCGCA--A----G-CC----
* * ** * * * **** * **
16842169 AGGCGGGATGCGTAAACCGTGGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTCATATTT
762 --G-TGGAT-CG-ATAGGGTGG-TAGGT-GGGT-TTAGGCACATCTT---CATAT-TTC---TGC
* * ** ** * *** * * * ** *
16842233 C-TGCC-GTGCCA-ATGCCAT-TTTTTTGGCTT-GTA-AATTCGTACAAT-GG
812 CATGCCAATGCCATTTTTC-TGGCTTGTAAATTCATACAA-TGGTCCCTTAAG
* * * * *
16842279 TCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTCTCTATTTTTCATGATTTTTG
1 --CCTT----CAT-GTG--AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** ** * *
16842344 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAATAAGTTTTCACGCCAAACCTGGTA
57 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
16842409 GGCGTGATCCTTGTATTTTTGTTGGCATTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
122 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
16842474 GATTTTGTGATCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAAC
187 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
16842539 CTGTAAAATCTAAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTCATGAGGGATA-GGGGC
252 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* ** * *
16842603 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTACACACCCCTCCAGCCCCCCCG
317 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * * * *
16842668 ATCATCGGAACCCCAATGCCG-CTGATCAGGTTCTCCGGCTATGGAGTCCTGGTGAAGAAAAATG
382 ATCGTCGGAACCCCAATG-CGTC-GGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATA
* * * *
16842732 CGGCACCAGCGCATGCTCAAGCCCAGCATATGCTACCACAACCCTCGGTCTGGTCCAATCTTAGA
445 CGGCACCAGCACATGC-CGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGA
*
16842797 CTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAA
509 CTGGGAATGAACT-C-----C-------------G-------TATGCCTAAGTCAACCCACGAAA
* * * * *
16842862 CT-AGCGTGCCGGCGCTTAG-CGTACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTC
548 -TGAGCGTGCAGGCGCTAAGCCG-GCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTC
* * * * * * *
16842925 CCCCTCCGCATG-TCGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGATTGGGAA
611 CCCCTCTGCGTGCT-GTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * *
16842989 TGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-------AGCGGGCGGGTACTATGTCGGCC
675 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCC
* * *
16843046 AGAGAGGCGGAATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
740 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
16843111 TTTCTGCTATGCCAATGACATTTTTCTGGCTTTTAAATTCATACAATGGTCCCTTAAG
805 TTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
16843169 CCTTCATGTGAAGTTTCATGGCAATACGACTTGTTCTCTATTTTTCACGATTTTCGAAGCTTTTT
1 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
**
16843234 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAATTAGTTTTGGCCCCAAACTTGGTAGACGTGATC
66 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
16843299 CTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTA
131 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
16843364 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
16843429 CTCAAATGCTCTTCAAGGGGG-GTGAGTTCTCGAAGTTTGGTGAGGGATAGGGGTCCAATATAAG
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
16843493 GGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
326 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
* * *
16843558 AACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGTCCCGATGAAGAAAAATACGACACCAGC
391 ACCCCAATG-CGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAGC
* ** *
16843623 ACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
455 ACATGC-CGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
16843688 ACTCCGTATG
519 ACTCCGTATG
16843698 GTTAGACTGG
Statistics
Matches: 4848, Mismatches: 719, Indels: 538
0.79 0.12 0.09
Matches are distributed among these distances:
852 1 0.00
853 164 0.03
854 225 0.05
855 186 0.04
856 164 0.03
857 6 0.00
858 2 0.00
859 18 0.00
860 6 0.00
861 212 0.04
862 13 0.00
863 453 0.09
864 645 0.13
865 99 0.02
866 38 0.01
867 85 0.02
868 1 0.00
869 7 0.00
870 80 0.02
871 99 0.02
872 47 0.01
873 10 0.00
874 300 0.06
875 109 0.02
876 63 0.01
877 3 0.00
878 15 0.00
879 3 0.00
880 30 0.01
881 434 0.09
882 3 0.00
883 91 0.02
884 63 0.01
885 16 0.00
886 7 0.00
887 23 0.00
888 85 0.02
889 107 0.02
890 51 0.01
891 20 0.00
892 25 0.01
893 14 0.00
894 6 0.00
895 3 0.00
896 3 0.00
900 5 0.00
901 2 0.00
903 7 0.00
904 7 0.00
905 3 0.00
906 1 0.00
908 3 0.00
910 5 0.00
911 1 0.00
913 5 0.00
914 70 0.01
915 4 0.00
917 5 0.00
919 2 0.00
920 1 0.00
921 2 0.00
923 4 0.00
924 9 0.00
925 4 0.00
927 2 0.00
928 4 0.00
930 1 0.00
931 1 0.00
932 59 0.01
934 1 0.00
935 2 0.00
938 2 0.00
940 1 0.00
941 4 0.00
942 11 0.00
943 7 0.00
944 6 0.00
945 5 0.00
946 11 0.00
947 8 0.00
948 7 0.00
949 15 0.00
950 4 0.00
951 5 0.00
952 4 0.00
953 10 0.00
954 1 0.00
956 120 0.02
957 329 0.07
958 12 0.00
959 4 0.00
961 1 0.00
962 6 0.00
963 9 0.00
964 2 0.00
968 2 0.00
971 1 0.00
973 1 0.00
975 1 0.00
976 5 0.00
978 1 0.00
982 1 0.00
983 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
ACCCCAATGCGTCGGTCAGGTTCTCCAGCGATGGTGTCCCGATGAAGAAAAATACGGCACCAGCA
CATGCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATTCA
TACAATGGTCCCTTAAG
Found at i:16841870 original size:26 final size:26
Alignment explanation
Indices: 16841834--16841912 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
16841824 CTGGTCCAAT
16841834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16841860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16841886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16841912 C
1 C
16841913 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16842827 original size:26 final size:26
Alignment explanation
Indices: 16842791--16842843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16842781 CTGGTCCAAT
*
16842791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16842817 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16842843 C
1 C
16842844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16843702 original size:26 final size:26
Alignment explanation
Indices: 16843672--16843847 Score: 289
Period size: 26 Copynumber: 6.8 Consensus size: 26
16843662 CCGGTCCGAT
16843672 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16843698 GTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16843724 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16843750 GTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16843776 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16843802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16843828 CTTAAACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
16843848 TATATTCCTA
Statistics
Matches: 137, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 137 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16843755 original size:52 final size:52
Alignment explanation
Indices: 16843672--16843847 Score: 325
Period size: 52 Copynumber: 3.4 Consensus size: 52
16843662 CCGGTCCGAT
*
16843672 CTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
1 CTTAAACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
16843724 CTTAAACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
1 CTTAAACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
* *
16843776 CTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
16843828 CTTAAACTGGGAATGAACTC
1 CTTAAACTGGGAATGAACTC
16843848 TATATTCCTA
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 121 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (52 bp):
CTTAAACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCTTATG
Found at i:16845768 original size:142 final size:141
Alignment explanation
Indices: 16845510--16845772 Score: 313
Period size: 142 Copynumber: 1.9 Consensus size: 141
16845500 GAAGGATCAG
* * *
16845510 GCGATGGTGTTTACGTAGGGGGGATAGCATCGAGCCAAAGGGATGCACGGGCTAGCTAGCGGGCA
1 GCGATGGTATTCACGTAGGAGGGATAGCATCGAGCCAAAGGGATGCACGGGCTAGCTAGCGGGCA
* * * *
16845575 CGCTGCTAGACCCCTGTGGCCAGTCGGGCTGGTCGGTTGCAGCTAGGGCAGTCCACACCCTTGCG
66 CGCTGCTAGACCCCAGTGGCCAGTCGAGCTAGTC-GTTGCAGCTAGAGCAGTCCACACCCTTGCG
16845640 AGACTAGACCAC
130 AGACTAGACCAC
* *
16845652 GCGATGGTATTCATGTAGGAGGGAT-GCCATCGAGCC-AAGAGGATGCGCGGGCTAGC-AG-GTA
1 GCGATGGTATTCACGTAGGAGGGATAG-CATCGAGCCAAAG-GGATGCACGGGCTAGCTAGCG--
* *
16845713 GGCATGCTGCTAGGCCCCAGTGGCCAGTCGAGCTAGT-GTACTGCAGCT-GAAGCAGTCCAC
62 GGCACGCTGCTAGACCCCAGTGGCCAGTCGAGCTAGTCGT--TGCAGCTAG-AGCAGTCCAC
16845773 CTGAGTCCCC
Statistics
Matches: 103, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
140 3 0.03
141 7 0.07
142 93 0.90
ACGTcount: A:0.21, C:0.25, G:0.36, T:0.18
Consensus pattern (141 bp):
GCGATGGTATTCACGTAGGAGGGATAGCATCGAGCCAAAGGGATGCACGGGCTAGCTAGCGGGCA
CGCTGCTAGACCCCAGTGGCCAGTCGAGCTAGTCGTTGCAGCTAGAGCAGTCCACACCCTTGCGA
GACTAGACCAC
Found at i:16846924 original size:24 final size:24
Alignment explanation
Indices: 16846892--16846955 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
16846882 CCACAAGTGG
16846892 GATGGTCAGTGGACCATGTGCTGT
1 GATGGTCAGTGGACCATGTGCTGT
16846916 GATGGTCAGTGGACCATGTGCTGT
1 GATGGTCAGTGGACCATGTGCTGT
*
16846940 GATGGTTAGTGGACCA
1 GATGGTCAGTGGACCA
16846956 GGAGTTCTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (24 bp):
GATGGTCAGTGGACCATGTGCTGT
Found at i:16848755 original size:26 final size:26
Alignment explanation
Indices: 16848719--16848771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16848709 GTTGACTTAG
16848719 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16848745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16848771 G
1 G
16848772 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16851932 original size:26 final size:26
Alignment explanation
Indices: 16851902--16851954 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16851892 GTTTACTTAT
16851902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16851928 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16851954 G
1 G
16851955 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16852515 original size:888 final size:888
Alignment explanation
Indices: 16850096--16864138 Score: 18368
Period size: 889 Copynumber: 15.9 Consensus size: 888
16850086 CCCGCCCGTC
* * * * * * * *
16850096 CGCCCGCCCGCTCGTTTAATGGGCTGACTTAGGCGTGCGAAATTCATT-CTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
16850160 GAGTTCATTCCCAGACTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGG
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGG
* * ** * * * *
16850225 -ATGTGCTGGTGTCGTATTTTTTTTCGTCGGGACACCATCACCGAAGAATCTAACCGGCGGCATT
130 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
16850289 GGGGTTCCGACGATCAGGGGGG-C-GGGGGGTGTGCACACATGATGTGCGGTGGGTGCTAGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16850352 TGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
16850417 TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
16850482 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAAT
* * * * *
16850547 AAAAGGATCACGTCTACCAA-ATTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCAA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * * *
16850611 ACCCTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * *
16850676 GAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
* *
16850741 TGAAGATGTGCCTAAACCCACCTACCACCCTATCAATACACGGCTTGCGCATCCCGCCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
16850806 -CTGACGTAGTGCCCACCCGCCCACCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCAT
714 CCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
16850870 TCCCGGTCTAAGATCAAACCAGATTGAGGGTTACAGTAGTAGGATCGGTAGCACGCAGAGGGGGA
778 TCCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
16850935 CCC-TTCGATCCCTGGCTTGCGCTTCCCGCCCCTCTAGCCGGCTGAG
842 CCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16850981 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16851046 GAGTTCATTCCCAATCTAAGATCAGGCT-GGACCGAGGATTGCGGCAGCACATGCTGGGCTCAGG
66 GAGTTCATTCCCAGTCTAAGATC-GGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** **
16851110 CATGTGCTGGTGCCATATTTTTCTTCGCCGGGACACCATCGTCGGAGAACAGGACCGGTGGCATT
130 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT
* * * * * *
16851175 GGTGTTCCAACGATCGGGGGGGCCAGGGCGGTGTGCGCACATGATGTACGGTGGGTGCTGGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
16851240 TGGCCCTTATATTGGCCCCCTATCCCTCGTAAAACCTTGAGAACTCACACCCCTTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
16851305 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16851370 ATGGTCACAAAATCTTGAACACTTCGACTTTTTAGCTGAATATTTTTGTGGATGCCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAAT
* *
16851435 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * * *
16851500 ATCGTAAAAAGTTTTGATAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* ** * *
16851565 GAAGGCTTATGCAACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGGTAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
* * * *
16851630 TGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACGGCTTGCGAATCCCGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* ** *
16851695 CCGGAGTAGTGCCCACCCGATCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATT
714 CCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
16851760 CTCAGTCTAAGATCGGACCAACTGAGAGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
779 CCCAGTCTAAGATCAGACCAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * *
16851825 CGATCGGTCCCCGGCATGCGCATCCTGCCCCTCTGGCCGGTTGAG
844 CGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * * *
16851870 GGCCCGCACGCTAATTTCATGGGTTTACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
16851935 GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
16852000 ATGTACTGGTGCCGTATTTTTCTTCTTCGGGACACCATCGTCGGAGAACCTGACC-AGCGGCATT
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGA-CGGCATT
* * * *
16852064 GGGGTTCCGGCGATCGAGGGCGCCGGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16852129 TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16852193 TTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16852258 ATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAATTTTTTATGGATGCCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAAT
* * *
16852323 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTATGAAAAAAATTTAAAAAATCTCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * * * *
16852388 ATCATAAAAAGTTTTGATAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * * *
16852453 GAAGGCTTATGCGACCATTGTATGAATTTACAAGCCAGAAAAATGGTATTGGCATGGTAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
16852518 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
** * ** *
16852583 TTGGAGTAGTGCCCACCCGATCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGATTTCATT
714 CCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
16852648 CCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGGAC
779 CCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * * * *
16852713 CTGACCGGTCCCTGACATGCGAATCCTGCCCCTCTGGCCTGCTGAG
843 CCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** *
16852759 GGCCCGCACGTTAATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
16852821 G-G---ATT----G----A-A-C----C--A---AGGGTTGCGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * ** *
16852863 ATGTGCTGGTGCTGTATTTTTCTTCACCAGGACACCATCG-CTGGAGAACAGGACCGACGACATT
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTC-GGAGAACCTGACCGACGGCATT
* * * *
16852927 GGTGTTCCGACGATCGGGGGGGCCAGGGCGATGTGCGCACATGATGTGCGATGGGTGCTGGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
16852992 TGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16853057 TTGAGACTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16853122 ATGATCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAAT
* * * * * *
16853187 ACAAGGATCATGTCCACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* ** ** * *
16853252 ACCCTAAAAAGTTTTGGAAATAATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * * *
16853317 GAAGGCTTAAAGGACCATTGTATGAATTTACAAACCAGAAAAATGGCATTGGCACGGCAAAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
** **
16853382 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGAACGGCTTAAGCATCCCGCCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * *
16853447 CCGGCGTAGTGCCCGCCCGTCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
714 CCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * ** * * *
16853512 CTCAGTCTAAGATCAGACCAGACCGAGGTTTATGGTAGTAGGATCGACAGCACAG-AGAGGGGGA
779 CCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC-GCAGAGGGGGA
* *
16853576 CCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAG
842 CCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16853623 CGCCCGCACGCTAGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
16853688 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16853753 ATGTGCTGGTGTCGCT-TTTTTCTTCGTTGGGACACCATCCTCGGAGAACCTGATCGACGGCATT
131 ATGTGCTGGTGCCG-TATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT
* * * * * * *
16853817 GGGGTTTCGACAATCGAGAGGGCCAGGGGGAGGGTATGCGCACTTGATGTACGATGGGTGCTGGT
195 GGGGTTCCGACGATCGGGGGGGCC--GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16853882 ACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGAG
257 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16853947 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
322 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
16854012 CAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTTATGCATGCCAACAA
387 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A-ATTTTTTGTGCATGCCAACAA
*
16854076 AAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATC
450 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* * *
16854141 CCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
515 TCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
**
16854206 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGTGTTGGCATGGCAGA
580 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGA
* *
16854271 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCCGTCTCT
645 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* * * * * * *
16854336 CTGACTGGCGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTT
710 CTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * * * *
16854401 CATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTATGGTAGTAGGATCGGTAGCATGCAGAGGG
775 CATTCCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * * *
16854466 GGACTC-AGCCGATCCTCGTCTTGTGCATCCTGCCCCACTTGCCGGTTGAG
839 GGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** *
16854516 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGCTTACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** ** * * * *
16854581 TAGTTCATTCCCAGTCTAAGATCATATTAGACCGAGGGTTACGGTAGCGCATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * * *
16854646 ATGTGCTGGTGTCGTATTTTTCTTCACCGGGACACCATCGCCAGATAACCTGACCGGCGGCATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * *
16854711 GGGTTTCGATGATCGGGGGGGCC-AGGGGGTGTACGCACATGATGTGCGGTGGGTGCTGGTACTT
196 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* **
16854775 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCACACTCGTTTAAAGAGCAT
261 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCAT
*
16854839 TTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
16854904 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAAAAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAAT
* *
16854969 ACAAGGATCACGTCTA-AAATGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
454 ACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
* *
16855033 AACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
518 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
*
16855098 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAATATGGGATTGGCATGGCAGAAA
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAA-ATGGCATTGGCATGGCAGAAA
* *
16855162 TATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * *
16855227 GGTCGGCGTAGTGCCCGCACGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
712 GGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** * *
16855292 TTACCAGTCTAAGATCGGACCGGAGTGAGGGTTGCAACAGTAGGATCGGCAGCACACAGAGGGGG
777 TTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * ** * * * ** *
16855357 ACCTGGTCGATCCCTAACTTGCGCATCCCGTCCATCTAGCCAACCGAG
841 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
16855405 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGATCATTCCCTGTGTAAGCATATG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * ** *
16855470 AAGTTCATTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTGATGCAGCACATGCTGGGCTCGGTC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
16855535 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
16855600 GGGTTCCGGCTATCAGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
196 GGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16855665 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
16855730 TTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGAGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
16855795 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAAT
* ** * *
16855860 ACAAGGATCACGTCTACCACGTTTGGGGGAAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * ** *
16855925 ACCATAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
16855990 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGAATTGGCATGCCAGAAAAA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG--AAA---AA-T-G---G-C-------
** *
16856055 TGGAATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGAATGG
631 ----ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * *
16856120 CTTGCGCATCCCGCCTCTCTGGTCGGAAG-AGTGCCTACCCGCCCGTCCGCTCCTTTCGTCGGTT
692 CTTGCGCATCCCGCCTCTCTGGCCGG-AGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
16856184 GGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACTGCAGTAGG
756 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGG
* * * * * * *
16856249 ATCGGCAACATGAAGAAGGGGACCTGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGC
820 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
16856314 TGAG
885 TGAG
16856318 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
16856380 G-G---------A--C------C--A---GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
16856422 ATGTGCTGGTGCTGCATTTTTCCTCGTCGGGACACCATCGTTGGAGAACCTGACCGTCGACATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
16856487 GGGTTCCGGCGATC-GGGGGGCCGTGGGGGGTGTGCGCACATGACGTGCGATGGGTGTTGGTACT
196 GGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
16856551 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAAAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16856616 TTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATTGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
16856681 ATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTGTTTTGTGCATGCAAAAAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAAT
* * * * *
16856746 ACAAGTATCATGTCTACCAAGTTTAGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * *
16856811 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGGAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
16856876 GAAGGCTTAAGGGACCATTGTATGAATATACAAGCCAGAAAAATGGCAATGGCATGGCAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
* * **
16856941 TGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGACTTGCGCATCCCGTTTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * * *
16857006 CCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCTTT
714 CCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * *
16857071 CCCATTCTAAGATTGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGA-
779 CCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
16857135 CCTAGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTTAG
843 CCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16857182 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16857247 GAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * * *
16857312 ATGTGCTGGTGCCGCATTTTTCTTTGTCGAGACACCATCGCCGGAGAATCGGACCGGCGACATTA
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT-
** * *
16857377 GGGGTTCCGACGATCGGGGGGGCC-GACGGGTGTGCGCACAGGATGTGCGATGGGTGCTCGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16857441 TGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCTTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
16857505 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16857570 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAAT
* * * *
16857635 ACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAACAATTTCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * * *
16857700 ACCGTAAAAAGTTTTGAAAGTCGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
16857765 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATG
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
* ** **
16857830 TGAAGATGTTCCTAAACCCATGTACCACCC-ATCGATCCACGGCTTGCGCATGTCGCCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * * *
16857894 CCGGCGTAGTGCCCGCCTGCCCACCCGCTCGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTT
714 CCGGAGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * *
16857959 CATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGAAGGATCGGCAGCATGCAGAGAG
775 CATTCCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
16858024 GGACCCAACCGATCCCCGACTTGTGCATCCCGCCCTTCTGGCCGACTGAG
839 GGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16858074 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGGGTTAATTCCCAG--T---C-TA--
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
16858131 -AG---A-T--CAG--T----TC--A--GG-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16858178 ATGTGCTGGTGCCATATTTTTCTTCGTCGGGACACCATCGTCGAAGAACCTAACTGGA-GGCATT
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGAC-CGACGGCATT
* ** * * * *
16858242 AGGGTTCCGGTGATC-AGGGGGCCGGGGGGGTGTGCTCACATGATGTGTGATGGGTGCTCGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16858306 TGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16858371 TTGAGATTTTACAGGTTTGCTGCAAGTACCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
16858435 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAAT
*
16858500 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * *
16858565 GCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * *
16858630 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAGTGGCATGGCAGAAATT
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
* * * *
16858695 TAAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTTTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
16858760 CTGGCA-TAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGAAGTTCAT
714 CCGG-AGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
16858824 TCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGAAGAGGGGGA
778 TCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * *
16858889 CCCGATCGATCCCCAACTTGTGCATCCCGCCCCTTTGGCCGGCTGAA
842 CCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
16858936 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * ** *
16859001 GAGTTAACTCCCAGTCTAAGACCAGA-CAGGATCGAGGGTTGCAACAGCACATGCTGGGCTCGAG
66 GAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
16859065 CATGTGCTGGTGCTGCATTTTTCTTCGTCGAGACACCATCGTTGAAGAACCTAACCGACGGCATT
130 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT
* *
16859130 GGAGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAATTGTGCGATGGGCTGCTGGT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG-A-TGTGCGATGGG-TGCTGGT
* *
16859194 ACCTGGCCCTTAATATTGGCCCCCTATCCCTCATCAAACCCTCGAGAACTCACACCCCTTTAAAG
257 ACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAG
* *
16859259 AGCATTTGAGATTTTACAGGTTTGCTGGCCAATCGCCATTAAAGTGTCTGAAATGGGGACACTTT
320 AGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
16859324 TTTCGAAATGGACACGAAAATCTTGGTACACGTTC-AATTTTTAGCGGAATTTTTTTGTGCATGC
384 TTTC-AAATGGTCAC-AAAATCTT-GTACAC-TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
* * *
16859388 CAAC-AAAA-ACAAGGATCACG-CTTACCAAG-TTGGGG-AAAAAATCTTTCTGAAAAAATTTT-
444 CAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * * * *
16859447 AAAAATCTCGAACCGTAAAAAAG-TTTCAAAATCGTGAAAAGTCAGAGAGCGAGACATCTTGCCA
508 AAAAATCTCGAACCGT-AAAAAGTTTTAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCA
* *
16859511 TG-AACTTCATATGAAGGC-TAAGGTGACCATTGGGTACTGAATTTACAAGCCATGAAGAATGGC
571 TGAAACTTCACATGAAGGCTTAAGG-GACCATT--GTA-TGAATTTACAAGCCA-GAAAAATGGC
* * * * * *
16859574 ATTGGCCTGGTAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGATCCGCGACTTG
631 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
16859639 CGCATCCCGCCTCTCTGGCC-GACGTAGTGCCCGCCTGCCCGCTCGCTCGTTTCATCGGTTGGCT
696 CGCATCCCGCCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
16859703 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTTGCAGTAGCAGGATCG
760 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCG
* * * *
16859768 GCAGCACGAAGAGGGGGACCC-AGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
824 GCAGCACGCAGAGGGGGACCCGATC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
16859832 G
888 G
*
16859833 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *** * * *
16859898 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCCATAGCAGATGCTGGGCTCGAGA
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
16859963 ATGTGCTGGTGCCGTATTTTTCTTCATCGGGACACCATCGCCGGAGAACCTGACCGACAGCATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * * *
16860028 GTGTTCCGGCGATCGGGGGGGTC-GGGGGGTGTGCTCACATGATGTGTGATGGGTGCTCGTACTT
196 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
16860092 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
261 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
16860157 TGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
326 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
16860222 TGGACACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTTTCCATGCCAACAAAAATA
391 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA
** *
16860287 CAAGGATCACGTCTACCAAGTTTGGGGGAAAAACTCTTTCTGAAAAAATTTTAAAAAATCTCGAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAA
* * * * * *
16860352 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAGCGAGACATCTTGCCAAGAAACTTCACATG
520 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
*
16860417 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATAT
585 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATAT
* *
16860482 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGC
650 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * * *
16860547 C-GACGTAGTGCCCGCCCGCTCGCTCGCTCGTTTCGTCTGTTGGCTTAGGCGTACAGAGTTCATT
715 CGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** **
16860611 CTTAGTCTAAGATCAGACCAGA-TCGAGGGTTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGA
779 CCCAGTCTAAGATCAGACCA-ACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * *
16860675 CCC-AGCTGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCGGTTGAG
842 CCCGATC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16860722 GGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * *
16860787 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAACAGCAGATGCTGGGCTCGGGA
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
16860852 ATGTGCTGGTGCTC-CATTTTTCTTCATCGGGACACCATCGTCGGAGAACCTGACC-AGCAGCAT
131 ATGTGCTGGTGC-CGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGA-CGGCAT
* * *
16860915 TGGGGTTCCGGCGATC--GGGGGACGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTG
194 TGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16860978 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16861042 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
16861107 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAA
* * *
16861172 ATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCC
452 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
* * *
16861237 GAACCGTAAAAAGTTTAAAAAATCATGTAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
517 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
16861302 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAA
582 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAA
* * * *
16861367 TATGAGGATGTTCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCTCCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
16861432 GGTCGGTGTAGT--------GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
712 GGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
16861489 TTCCCAGTCTAAGATTAGAACAGACTGAGGGTTGCAGTAGCAGGATCGACAGCACACAGATGGGT
777 TTCCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
16861554 ACCCGATTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
841 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * **
16861602 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16861667 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTCCGGCAGCACATGCTGGGCTAGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * ** * * *
16861732 ATGTGCTAGTGCCATATTTTTCTTCGCCCGAACACCATCGCCAAAGAACCTAACCGATGGGATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
* *
16861797 GGGTTCCGGCGATCGGGGGTGCCGGGGGGGTG-GACGCACATGATGTGCGATGGGTGCTGGTACT
196 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACT
** * *
16861861 TGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
16861926 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT---G--A------TC--
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16861978 A---T---AAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTCTGTGCATACCAACAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAAT
* *
16862037 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
* * *
16862102 ACCGTAATAAGTTTTCAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
519 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * * * *
16862167 GAAGGCTTAAGGGACCATTGTGTGAATTTACAATCCAAAAAAATGGAATTGGCATGACAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
*
16862232 TGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCC-CTGGCTTGCGCATCCCGCCTCTCTG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGCCTCTCTG
* * *** *
16862296 GCC-GACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGATTCAATTAGGCATAC-GACTTCA
713 GCCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** ** * * * *
16862359 TTCCCAGTCTAAGATTGGACTGGA-TCGGGGGTAGCGGCAACAGGATCGGCAACACGCAGAGGGG
777 TTCCCAGTCTAAGATCAGAC-CAACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
*
16862423 GACCCGATCGATCCCC-AGCTTGCGCAT----CCCCTCTGGCCGACTGAG
840 GACCCGATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
16862468 TGCCCGCAAGCTCGTTTCGTTGGTTGACTT-GGCATACGGAGTTCATTCCCAGTCTAAGCATGCG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
16862532 GAGTTTATTCCCAGTCTAAGATC-GAACTGCACTGAGGGTTGCGACAGCACATGCTGGGCTTGGA
66 GAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * *
16862596 AATGTGCTGGTGCCGCATTTTTCTTAGCCGGGTCACCATCGTCAGAGAACCTGACCGATGGCATT
130 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATT
* * *
16862661 GGGGTTCCGACGATCGGGGGGG-CTGCGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
195 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
16862725 TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * **
16862789 TTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTTAAATGGCTACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16862854 ATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAAT
16862919 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTG
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC-G
*
16862983 AACCGTAAAAAGTTTTAAAAATCATGAAAAATTA-AAAACGAGTCGTCTTGCCATGAAACTTCAC
518 AACCGTAAAAAGTTTTAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16863047 ATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAA
582 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAA
**
16863112 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCGTGCCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* *
16863177 GGCTGGCGTAGT----GCCCGCCCG--C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
712 GGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
16863234 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGG
777 TTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * *
16863299 ACCCGATCGATCCTCGACTTACGTA-CCCGCCTCTCTAGCCGGCTGAG
841 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
16863346 CGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16863411 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
16863476 ATGTGCTGGTGCCGCATTTTTCTTTGTCGAGACACCATCGTCGGAGAACCTGACCGACGGCATTG
131 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
** * *
16863541 GGGTTCTAACGATCGGTGGGGGTC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
196 GGGTTCCGACGATCGG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16863605 TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
16863669 TTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGCAATTGGGGACATTTTTTTTA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCA
* * *
16863734 AATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATGTTTGTGCATGCCAATAAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAA
* * *
16863799 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACTTTTTGAAAAAATTTTAAAAAATCTCG
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
* *
16863864 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACA
518 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * *
16863929 TGAAGGCTTAAGGGAGCATTGTATGAATCTACAAGCCAGAAAAATGGCATTGGCATGGCCGAAAT
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAAT
* *
16863994 ATGAAGATATGCCTAAA-CCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGCCTCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * *
16864058 GGC-GACGTAGT----GCTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCA
713 GCCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
16864118 TTCCCAGTCTAAGATCAGACC
777 TTCCCAGTCTAAGATCAGACC
16864139 GGATTGAGGG
Statistics
Matches: 11632, Mismatches: 1254, Indels: 545
0.87 0.09 0.04
Matches are distributed among these distances:
862 193 0.02
863 549 0.05
864 931 0.08
865 533 0.05
866 229 0.02
867 6 0.00
868 6 0.00
869 3 0.00
870 76 0.01
871 41 0.00
872 1 0.00
873 1 0.00
874 26 0.00
875 83 0.01
876 5 0.00
877 8 0.00
878 49 0.00
879 168 0.01
880 521 0.04
881 359 0.03
882 365 0.03
883 8 0.00
884 57 0.00
885 47 0.00
886 517 0.04
887 128 0.01
888 1351 0.12
889 2313 0.20
890 362 0.03
891 451 0.04
892 355 0.03
893 940 0.08
894 94 0.01
895 35 0.00
896 47 0.00
897 447 0.04
898 36 0.00
899 5 0.00
900 1 0.00
901 1 0.00
909 1 0.00
912 2 0.00
913 280 0.02
914 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (888 bp):
CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAAC
CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
GGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
ATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:16853685 original size:26 final size:26
Alignment explanation
Indices: 16853655--16853707 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16853645 GTTGACTTAG
16853655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16853681 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16853707 G
1 G
16853708 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16854587 original size:26 final size:26
Alignment explanation
Indices: 16854551--16854600 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16854541 GACTTAGGCA
**
16854551 TACGGAGTTCATTCCTTGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
16854577 TACGTAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16854601 ATCATATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:16856048 original size:22 final size:22
Alignment explanation
Indices: 16856023--16856074 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
16856013 GAATTTACAA
16856023 GCCAGAAAAATGGAATTGGCAT
1 GCCAGAAAAATGGAATTGGCAT
16856045 GCCAGAAAAATGGAATTGGCAT
1 GCCAGAAAAATGGAATTGGCAT
*
16856067 GGCAGAAA
1 GCCAGAAA
16856075 TATGAAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.15
Consensus pattern (22 bp):
GCCAGAAAAATGGAATTGGCAT
Found at i:16857250 original size:26 final size:26
Alignment explanation
Indices: 16857214--16857266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857204 GTTGACTTAG
16857214 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
16857240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16857266 G
1 G
16857267 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16858997 original size:26 final size:26
Alignment explanation
Indices: 16858968--16859020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16858958 GTTGACTTAG
* *
16858968 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
16858994 GCATACGGAGTTAACTCCCAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
16859020 G
1 G
16859021 ACCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAACTCCCAGTCTAA
Found at i:16859895 original size:26 final size:26
Alignment explanation
Indices: 16859865--16859917 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16859855 GTTGACTTAG
16859865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16859891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16859917 G
1 G
16859918 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16860784 original size:26 final size:26
Alignment explanation
Indices: 16860754--16860806 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16860744 GTTGACTTAG
16860754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16860780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16860806 G
1 G
16860807 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16861670 original size:26 final size:26
Alignment explanation
Indices: 16861634--16861686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861624 GTTGACTTAG
*
16861634 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16861660 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16861686 G
1 G
16861687 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16862535 original size:26 final size:26
Alignment explanation
Indices: 16862499--16862551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16862489 GGTTGACTTG
16862499 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16862525 GCATGCGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16862551 G
1 G
16862552 ATCGAACTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16863416 original size:26 final size:26
Alignment explanation
Indices: 16863380--16863430 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16863370 TGACTTAGGT
16863380 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
16863406 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16863431 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16864770 original size:700 final size:703
Alignment explanation
Indices: 16863404--16864871 Score: 2302
Period size: 699 Copynumber: 2.1 Consensus size: 703
16863394 CCCAGTCTAA
* * *
16863404 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
*** *
16863469 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGAGACACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGACACCATCGTCGAAGAACCTGACCGAC
* * *
16863534 GGCATTGGGGTTCTAACGATCGGTGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
131 AGCATTGGGGTTCCAACGATCGGTGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
*
16863599 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAG
196 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAA
* * * *
16863664 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGCAATTGGGGACATTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAAATGGGGACACTTT
* * * *
16863729 TTTTAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATGTTTGTGCATGCCAAT
326 TTTCAAATGGACACAAAATCTTGTACACATCGAGTTTTTAGCTGAATATGTTTATGCATGCCAAC
* *
16863794 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACTTTTTGAAAAAATTTTAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAAAA
*
16863859 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACT
456 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
16863924 TCACATGAAGGCTTAAGGGAGCATTGTATGAATCTACAAGCCAGAAAAATGGCATTGGCATGGCC
521 TCACATGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCAGAAAAATGGCATTGGCATGGCA
* * *
16863989 GAAATATGAAGATATGCCTAAACCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGCCTC
586 AAAATATGAAGATATGCCGAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
*
16864054 TCTGGGCGACGTAGT-GCTCGCCCGCCCG-T-TCGTTTCGTCGGTTGGCTTAG
651 TCTGGGCGACGTAGTCGCCCGCCCGCCCGTTCTCGTTTCGTCGGTTGGCTTAG
* * * * *
16864104 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGGGGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* *
16864169 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCGAAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGACACCATCGTCGAAGAACCTGACCGAC
* * *
16864234 AGCATTGGGGTTCCGACGATC-G-GGTGGCCGAGGGGGTGTGTGCACATGATGTGTGATGGGTGC
131 AGCATTGGGGTTCCAACGATCGGTGGGGGCCG-GGGGGTGTGCGCACATGATGTGTGATGGGTGC
*
16864297 TGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACACCCTTAA
16864362 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACT
259 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAAATGGGGACACT
* *
16864426 TTTTTCAAAT-GATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
324 TTTTTCAAATGGA-CACAAAATCTTGTACACATCGAGTTTTTAGCTGAATATGTTTATGCATGCC
*
16864490 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAA
16864555 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16864620 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATG
518 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCAGAAAAATGGCATTGGCATG
* *
16864685 GCAAAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
583 GCAAAAATATGAAGATATGCCGAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* **
16864750 CCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGCTTA
647 CCTCTCTGGGCGACGTAGT---CGCCCGCCCGCCCGTT------CTCGTTTCGTCGGTTGGCTTA
16864815 G
703 G
* * * *
16864816 GCATATGGAGTTCAGTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCA
16864872 GGATCGACAG
Statistics
Matches: 695, Mismatches: 57, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
698 8 0.01
699 334 0.48
700 272 0.39
704 12 0.02
705 1 0.00
712 68 0.10
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (703 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGACACCATCGTCGAAGAACCTGACCGAC
AGCATTGGGGTTCCAACGATCGGTGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAA
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAAATGGGGACACTTT
TTTCAAATGGACACAAAATCTTGTACACATCGAGTTTTTAGCTGAATATGTTTATGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCAGAAAAATGGCATTGGCATGGCA
AAAATATGAAGATATGCCGAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
TCTGGGCGACGTAGTCGCCCGCCCGCCCGTTCTCGTTTCGTCGGTTGGCTTAG
Found at i:16865011 original size:26 final size:26
Alignment explanation
Indices: 16864975--16865027 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16864965 GTTGACTTAG
*
16864975 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16865001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16865027 G
1 G
16865028 ATCAAAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16867464 original size:26 final size:26
Alignment explanation
Indices: 16867434--16867486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16867424 GTTGACTTAG
*
16867434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16867460 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16867486 G
1 G
16867487 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16868178 original size:879 final size:877
Alignment explanation
Indices: 16865991--16869051 Score: 4107
Period size: 879 Copynumber: 3.5 Consensus size: 877
16865981 TTTCTTCGTC
* * *
16865991 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
* * * * *
16866056 GCATGCCAATAAAAATACAAGGATCCCGTCTA-TAACTTTGGGACCAAAACTCCTTCTGAAAAAA
66 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
16866120 TTTTAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCGTGAAAAAT-GAAAAACGAGTCGTCTT
131 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTT
16866184 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATA-CCAAAAAAATGGC
195 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCAAAAAAATGGC
*
16866248 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
259 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
16866313 TGCATCCTGCCTCTCTGGCTGGCGTAGTGCTCGCCCGCCCGCCCGCCTGTCAGCTCGATTCGTCG
324 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--T-TCATTTC-A-T--TCG
* *
16866378 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAA-GGTGTCGGCA
382 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGA-CGAAGGGTGT-GGTA
* * * *
16866441 GCAGGATCGACAGCACATAAAGTGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTGG
444 GCAGGATCG-CAGCACGTAAAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCACCCCTCTGG
* *
16866506 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAATCT
508 C-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * **
16866571 AAGCATACGGAGTTCATTCCCCGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCACATGCTG
572 AAGCATAC-GAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * *
16866636 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGAATCTGACCG
635 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCG
* *
16866701 GCGGCATTGGGGTTTCGGCAATCGGGGGGATCGGGGGGGTGTGCGCACATGATGTACGATGGGTG
700 GCGGCATTGGGG-TT---C---C--GGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
16866766 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTCA
756 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTA
* *
16866831 AAGAGCATTTGAGATTTTAGAGGTTTACTGCCAGTAGCCATTAAAGTGCCTAAAATG
821 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATG
*
16866888 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTATAGCTGAATTTTTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
* *
16866953 GCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCC-AAACTTCTTCTGAAAAAA
66 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* ** * *
16867016 TTTTAAAAAATCCCTAACTATAAAAACTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
131 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16867081 CCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCAAAAAAATGGCAT
196 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAT
* * *
16867146 TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTGGCG
261 TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
16867211 CATCCCGCCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCTCGTTTC-GTCTGTTGGCTTA
326 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCATTTCATTCGGTTGGCTTA
* * *
16867275 GGCATACGGAGTTCATTCCCAGTCTAATATCAGACTAAATC-AAGGGCTGTGGTAGTAGGATCAG
391 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-CGAAGGG-TGTGGTAGCAGGATC-G
* * * * *
16867339 CAG-ACGCAAAGGGGGACTCGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGC
453 CAGCACGTAAAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCACCCCTCTGG-CGGCTGAGC
* * * *
16867403 ACACGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
517 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-
16867468 AGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
581 AGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** *
16867533 TGTGCTGGTGCCGTTTTTTTTTTCGTCGGGACACCATC-TCCGGAGAACCTGACCCACGTCATTG
645 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGT-CGGAGAACCTGACCGGCGGCATTG
* * * * * *
16867597 GGGTTCCGGTGATCGGGGGGGTGTGCGCATATAATGTGCAATGGGTGCTGGTATTTGGCCTTTAT
709 GGGTTCCGGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
16867662 ATTGGCCCCCTATCCCTCATCAAATCTCGAGCACTCACAGCCCCTTAAAGAGCATTTGAGATTTT
774 ATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
16867727 ACAGGTTTGCTGCTAGTAGCCATTAAAGTGCCTAAAATG
839 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATG
16867766 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
16867830 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
66 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
16867895 TATTAAAAAATCCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
131 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
16867960 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCAT
196 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAT
* * * * *
16868025 TGGCATAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACG
261 TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
16868090 AATCCCGCTTCTCTAGCCGGTATAGTGCCCGCCCGCCCGCCCGTTCATTTCATTC-GTTGGCTTA
326 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCATTTCATTCGGTTGGCTTA
* ** ** * *
16868154 GGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTG-AGGGTTGCGGTAGCAAGATCGG
391 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAC-GAAGGG-TGTGGTAGCAGGATC-G
* * * *
16868218 TAGCACGTAGAGGGGGACCCGGTCGATCCCCA-ACTTGCGCATCCCACCCCTCTGGCCGGCTGAG
453 CAGCACGTAAAGGGGGACCCGATCGAT-CCCAGGCTTGCGCATCCCACCCCTCTGG-CGGCTGAG
* * * *
16868282 CGCCCACATGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
516 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16868344 AG--------A--C------CGGACC--A---AGGGTTGCGGCAGCACAAGCTGGGTTCTGGCAT
581 AGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** *
16868388 GTGCTGGTGCCGTATTTTTCTTCGTCGGGACACTTTCGTC-GAGAACCTAACCGGCGGCATTGGG
646 GTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * *
16868452 GTTCTGACGATCTAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
711 GTTCCGGCGATC------G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
16868517 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGA
768 CCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16868582 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
833 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATG
* * *
16868627 GGGACACGTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
* * * *
16868692 GCATGCCAAAAAAATTACAAGGATCACATCTACCAAGTTTGGGGTCAAAAATCCTTCTGAAAAAA
66 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
16868757 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTT
131 TTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16868822 GCCATGAAACTTCACATGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCA
195 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
* * * *
16868887 TTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACAGCTTGT
260 TTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16868952 GCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCTGCCCGCTCGTTCGTTTCA-TCGGTTGGCTT
325 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCATTTCATTCGGTTGGCTT
*
16869016 AGGCATACGGAGTTCATTACCAGTCTAAGATCAGAC
390 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
16869052 CGAACCGAGG
Statistics
Matches: 1930, Mismatches: 204, Indels: 94
0.87 0.09 0.04
Matches are distributed among these distances:
853 29 0.02
854 64 0.03
855 1 0.00
857 1 0.00
859 7 0.00
861 148 0.08
862 121 0.06
863 258 0.13
865 1 0.00
867 1 0.00
876 2 0.00
877 95 0.05
878 163 0.08
879 299 0.15
880 100 0.05
881 4 0.00
883 1 0.00
886 5 0.00
887 225 0.12
888 62 0.03
889 5 0.00
893 4 0.00
896 234 0.12
897 95 0.05
898 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (877 bp):
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAT
TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCATTTCATTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACGAAGGGTGTGGTAGCAGGATCGCAG
CACGTAAAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTC
ATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
GGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGCCTAAAATG
Found at i:16869155 original size:16 final size:16
Alignment explanation
Indices: 16869136--16869169 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
16869126 TTTTTTGTAT
16869136 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
16869152 TTTATTATTATTATTA
1 TTTATTATTATTATTA
16869168 TT
1 TT
16869170 GTGTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:16869260 original size:14 final size:12
Alignment explanation
Indices: 16869248--16869280 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
16869238 TAATATTATG
16869248 TTATCATTATTA
1 TTATCATTATTA
16869260 TTAT-ATTATTA
1 TTATCATTATTA
16869271 TTATCATTAT
1 TTATCATTAT
16869281 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:16869263 original size:17 final size:17
Alignment explanation
Indices: 16869241--16869280 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
16869231 TATTTGTTAA
*
16869241 TATTATGTTATCATTAT
1 TATTATATTATCATTAT
*
16869258 TATTATATTATTATTAT
1 TATTATATTATCATTAT
*
16869275 CATTAT
1 TATTAT
16869281 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (17 bp):
TATTATATTATCATTAT
Found at i:16869741 original size:26 final size:27
Alignment explanation
Indices: 16869696--16869752 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
16869686 CTGTAGGGAT
*
16869696 CGAAAATAATTTTTTAGAAATTTTTGG
1 CGAAAATAATTTTTTAGAAATTTCTGG
* *
16869723 CGAAAAT-TTTTTTTGGAAATTTCTGG
1 CGAAAATAATTTTTTAGAAATTTCTGG
16869749 -GAAA
1 CGAAA
16869753 TTTCCAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 4 0.15
26 16 0.59
27 7 0.26
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (27 bp):
CGAAAATAATTTTTTAGAAATTTCTGG
Found at i:16869820 original size:31 final size:31
Alignment explanation
Indices: 16869767--16869827 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
16869757 CAGATTCCGG
* * ** *
16869767 CGAAAATTCCGGCGAAGTTTGAATTTTTCGA
1 CGAAAACTCCGGCCAACCTTGAAGTTTTCGA
16869798 CGAAAACTCCGGCCAACCTTGAAGTTTTCG
1 CGAAAACTCCGGCCAACCTTGAAGTTTTCG
16869828 GCGACCAACC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (31 bp):
CGAAAACTCCGGCCAACCTTGAAGTTTTCGA
Found at i:16870178 original size:24 final size:23
Alignment explanation
Indices: 16870136--16870189 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
16870126 GCCGCTCCAG
* *
16870136 GTTTTTTTTTTTTTCATTTATTT
1 GTTTATTTGTTTTTCATTTATTT
*
16870159 GTTTATTTGTTTTTCTATTTTTTT
1 GTTTATTTGTTTTTC-ATTTATTT
*
16870183 ATTTATT
1 GTTTATT
16870190 AGATTAGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.11, C:0.04, G:0.06, T:0.80
Consensus pattern (23 bp):
GTTTATTTGTTTTTCATTTATTT
Found at i:16870305 original size:35 final size:33
Alignment explanation
Indices: 16870216--16870307 Score: 93
Period size: 35 Copynumber: 2.8 Consensus size: 33
16870206 ATATTTTTTA
16870216 TCTTTATCTTATTTTTAT-TT-TTGT-TTTACTTT
1 TCTTTAT-TTATTTTTATATTCTT-TATTTACTTT
* *
16870248 TCTTTATTTATTTTTTTCTTCTTTATTTACTTT
1 TCTTTATTTATTTTTATATTCTTTATTTACTTT
16870281 TACTTTTATTT-TGTTTTATATTCTTTA
1 T-C-TTTATTTAT-TTTTATATTCTTTA
16870308 AATAAAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
31 9 0.18
32 10 0.20
33 11 0.22
34 2 0.04
35 19 0.37
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.74
Consensus pattern (33 bp):
TCTTTATTTATTTTTATATTCTTTATTTACTTT
Found at i:16870512 original size:177 final size:178
Alignment explanation
Indices: 16870317--16870779 Score: 673
Period size: 177 Copynumber: 2.6 Consensus size: 178
16870307 AAATAAAAAT
*
16870317 AAAAAAAATACTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
* * *
16870382 TATTTTTGGGGAAAAGTTTAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-AAAAAAAGGATT
66 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAAAAAGATT
** * *
16870445 TTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCA
131 TTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTCCA
16870494 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
* **
16870559 TATTTTTGGGGAAAAGTGGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAAAAAA
66 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTC----AAAAAAAAA
*
16870624 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCCA
127 GATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCCA
*
16870676 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAAGTAAATTTTCAAAA
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAA-TAAA-TTTC---C
*
16870739 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
60 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
16870780 CTACACAAGA
Statistics
Matches: 259, Mismatches: 15, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
177 103 0.40
178 7 0.03
181 4 0.02
182 55 0.21
183 51 0.20
186 39 0.15
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (178 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAAAAAGATT
TTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCCA
Found at i:16870520 original size:61 final size:59
Alignment explanation
Indices: 16870317--16870779 Score: 591
Period size: 57 Copynumber: 7.7 Consensus size: 59
16870307 AAATAAAAAT
*
16870317 AAAAAAAATACTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC-
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
* * * *
16870375 -CAAAAAATATTTTTGGGGAAAAGTTTAAAGTATCAATTTTCCTTAAAAATAAATTTTC-
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCA
** * *
16870433 AAAAAAAGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTCA
16870494 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC-
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
* * * *
16870552 -CAAAAAATATTTTTGGGGAAAAGTGGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTC----A
* * *
16870616 AAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCCA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTTCA
16870676 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAAGTAAATTTTCAA
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAA-TAAA-TTTC-A
16870737 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
16870780 CTACACAAGA
Statistics
Matches: 357, Mismatches: 32, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
57 94 0.26
58 7 0.02
59 57 0.16
60 58 0.16
61 91 0.25
64 3 0.01
65 47 0.13
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (59 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
Found at i:16876105 original size:26 final size:26
Alignment explanation
Indices: 16876065--16876114 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16876055 AACTTAGGGC
*
16876065 TACGGAGTTCATTCCCCGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
16876091 TACGGAGTTCTTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16876115 ATCGAACCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:16877854 original size:26 final size:26
Alignment explanation
Indices: 16877817--16877869 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16877807 GTTGACTTAG
*
16877817 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16877843 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16877869 G
1 G
16877870 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16878688 original size:890 final size:890
Alignment explanation
Indices: 16876953--16878733 Score: 2599
Period size: 890 Copynumber: 2.0 Consensus size: 890
16876943 GTTGACTTAG
* * * *
16876953 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGTACTAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * *
16877018 CTCGGGCATGGGCTGGTGTCGCATTTTTTTTCGTCGGGACACCATCCCTGAAGAACCTGACCGAC
66 CTCGGGCATGGGCTGGTGCCGCATTTTTTATCGTCGAGACACCATCCCAGAAGAACCTGACCGAC
* * *
16877083 GACATTAGGGTTCCGGCGATCGGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
131 GACATTAGGGTTCCGACGATCGGGGGGGGCGGGGGGTGTGCCCACATGATGTGCAATAGGTGCTG
* * *
16877148 CTACTTGGCCCTTATATTGGCCCCTTATCCCTCATGAATCCACGAGAACTCACAACCCCTTAAAG
196 CTACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCACGAGAACTCACAACCCCTTAAAG
* *
16877213 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTCTGAAATGGGGACATTTT
261 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTCTGAAATGGGGACATTTT
* *
16877278 TTCAATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
326 TTCAATATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAA
* * *
16877343 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTGAAAAAA
391 AAAAATAAAAGGATCACGGCTACCAAGTTTGGGGCCAAAAAGCCTTCTGAAAAAATTTGAAAAAA
* * * ** *
16877408 TCTCGAACCGTGAAATGTTTTGAAAATCTTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
456 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* * * *
16877473 TCACATGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCATGGCA
521 TCACATGAAGGCTTAAGAGACCAATGTATGAATTTAAAAGCAAGAAAAATGGCATTGGCATGGCA
* * *
16877538 GAAATATGAAGATGTGTCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
586 GAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGAGCCACAGCTTGCGCATCCCGCCT
* * ** * * *
16877603 CTCTGGCCGATGTAATGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCCTACAGAG
651 CTCTGGCCGACGTAATGCCAGCCCGCCCGCCCACTAGTTTCATCGGTTGGCTTAGGCATACAGAG
** *
16877668 TTCATTCCCAGTCTAATGTCAGACCAGAATGAGGGTTGCCATAGTAAGATTGACAGCACGTAGTG
716 TTCATTCCCAGTCTAATGTCAGACCAGAATGAGGGTTGCCATAACAAGATCGACAGCACGTAGTG
* * * ***
16877733 GGGGACTCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGTCCGCACGCTC
781 GGGGACTCCGACGATCCCCGACTTCCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
*
16877798 GTCTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAA
846 GTCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
16877843 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * *
16877908 CTCGGGCATGTGCTGGTGCCGTATTTTTTATCGTCGAGACACCGTCACCAG-AGAACCTGACCGG
66 CTCGGGCATGGGCTGGTGCCGCATTTTTTATCGTCGAGACACCATC-CCAGAAGAACCTGACCGA
** * * * * * *
16877972 CGGTATTGGGGTTCTGATGATCGATGGGGGGCGGGGGGTGTGCCCATATGATGTGCGATAGGTGC
130 CGACATTAGGGTTCCGACGATCG-GGGGGGGCGGGGGGTGTGCCCACATGATGTGCAATAGGTGC
* * *
16878037 TTG-TACTTGACCCTTATATTGGCCCAC-TATCCTTCATCAAACCTCGAGAACTCACACCCCCTT
194 -TGCTACTTGACCCTTATATTGGCCC-CTTATCCCTCATCAAACCACGAGAACTCACAACCCCTT
16878100 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG-TCTGAAATGGGGACA
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTCTGAAATGGGGACA
*
16878164 CTTTTTTCAA-ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
322 -TTTTTTCAATATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATG
* * * *
16878228 CCAAAAAAAATAAAAGGATCATGGCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTA
386 CCAAAAAAAATAAAAGGATCACGGCTACCAAGTTTGGGGCCAAAAAGCCTTCTGAAAAAATTTGA
* *
16878293 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTG
451 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
* *
16878358 AAACTTCACATGAAGGCTTAAGAGACCAATGTGTGAATTTAAAAGCCAGAAAAATGGCATTGGCA
516 AAACTTCACATGAAGGCTTAAGAGACCAATGTATGAATTTAAAAGCAAGAAAAATGGCATTGGCA
** *
16878423 TGGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACAGCTTGCGCATCC
581 TGGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGAGCCACAGCTTGCGCATCC
*
16878488 CGCCTCTCTGGCCGACGTAATGCCAGCCCGTCCGCCCACTAGTTTCATCGGTTGGCTTAGGCATA
646 CGCCTCTCTGGCCGACGTAATGCCAGCCCGCCCGCCCACTAGTTTCATCGGTTGGCTTAGGCATA
* * * *** *
16878553 CGGAGTTCATTCCCAGTCTAA-GATCAGACCGGACTGAGGGTTGTGGTAACAGGATCGACAGCAC
711 CAGAGTTCATTCCCAGTCTAATG-TCAGACCAGAATGAGGGTTGCCATAACAAGATCGACAGCAC
*
16878617 GCT-GTGGGGGAC-CCGACCGATCCCCGACTTCCGCATCCCGCCCCTTTGGCCGG-TCGAGCACC
775 G-TAGTGGGGGACTCCGA-CGATCCCCGACTTCCGCATCCCGCCCCTCTGGCCGGCT-GAGCACC
* *
16878679 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 CGCACGCTCGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
16878733 G
1 G
16878734 ATCAGACCGG
Statistics
Matches: 791, Mismatches: 91, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
889 5 0.01
890 635 0.80
891 148 0.19
892 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGGGCTGGTGCCGCATTTTTTATCGTCGAGACACCATCCCAGAAGAACCTGACCGAC
GACATTAGGGTTCCGACGATCGGGGGGGGCGGGGGGTGTGCCCACATGATGTGCAATAGGTGCTG
CTACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCACGAGAACTCACAACCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTCTGAAATGGGGACATTTT
TTCAATATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAA
AAAAATAAAAGGATCACGGCTACCAAGTTTGGGGCCAAAAAGCCTTCTGAAAAAATTTGAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGAGACCAATGTATGAATTTAAAAGCAAGAAAAATGGCATTGGCATGGCA
GAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGAGCCACAGCTTGCGCATCCCGCCT
CTCTGGCCGACGTAATGCCAGCCCGCCCGCCCACTAGTTTCATCGGTTGGCTTAGGCATACAGAG
TTCATTCCCAGTCTAATGTCAGACCAGAATGAGGGTTGCCATAACAAGATCGACAGCACGTAGTG
GGGGACTCCGACGATCCCCGACTTCCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
GTCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16878819 original size:159 final size:159
Alignment explanation
Indices: 16878529--16878892 Score: 505
Period size: 159 Copynumber: 2.3 Consensus size: 159
16878519 CCGCCCACTA
* * **
16878529 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
* * * * *
16878594 TGTGGTAACAGGATCGACAGCACGCTGTGGGGGACCCGACCGATCCCCGACTTCCGCATCCCGCC
66 TGCGGTAACAGGATCGACAGCACGCTGAGGGGGACCCGACCAACCCCCGACTTACGCATCCCGCC
* *
16878659 CCTTTGGCCGGTCGAGCACCCGTACGCTC
131 CCTCTGGCCGGTCGAGCACCCGCACGCTC
* *
16878688 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
** ** * *
16878753 TGCGGTAACAGGATCGGTAGTGCG-TAGAGGGGGACCCGATCAACCCCCGACTTACGCATCCTGC
66 TGCGGTAACAGGATCGACAGCACGCT-GAGGGGGACCCGACCAACCCCCGACTTACGCATCCCGC
* ** *
16878817 CCCTCTGGCCGGTTGAGTGCCCGCATGCTC
130 CCCTCTGGCCGGTCGAGCACCCGCACGCTC
16878847 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16878893 CATACAAAGC
Statistics
Matches: 179, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 1 0.01
159 178 0.99
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
TGCGGTAACAGGATCGACAGCACGCTGAGGGGGACCCGACCAACCCCCGACTTACGCATCCCGCC
CCTCTGGCCGGTCGAGCACCCGCACGCTC
Found at i:16880407 original size:892 final size:886
Alignment explanation
Indices: 16878683--16881555 Score: 3974
Period size: 892 Copynumber: 3.2 Consensus size: 886
16878673 AGCACCCGTA
* * * *
16878683 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** * ** ** * * * * * * * *
16878748 AGGGTTGCGGTAACAGGATCGGTAGTGCGTAGAGGGGGACCCGATCAACCCCCGACTTACGCATC
66 AGGGTTGCGACAGCAGGATCGACAGCACGCAGTGAGGGACCCGACCGATCCCCGGCTTGCGCATC
* ** * * *
16878813 CTGCCCCTCTGGCCGGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*** * *
16878878 CATTCCCAGTCTAAGCATACAAAGCTCATTCCCAGTCTAAGATC-GAACCGGACCGAAGGTTGCG
196 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCG
* * *
16878942 ACAGCACAGGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGACACCATCACCG
260 ACAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCA-CGGGACACCATCGCCG
* * *
16879007 AGGAACCTAACCGACGGTATTGGGGTTCGAGCAATCG-GGGGGTGGCCGA-GGGGGGTGTGCGCA
323 A-GAACCTGACCGACGGTATTGGGGTTCCAGCGATCGAGGGGGT---CGAGGGGGGGTGTGCGCA
* * *
16879070 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACATCG
384 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
16879135 AGAACTCACACCCTCATAAAGGGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGT
449 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
16879200 GTCTGAAATGGGGATACTTTTTTCAAATGGTCAGAAAATCTCGTACACTTCAAGTTTTTAGCTGA
514 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
16879265 ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCT
579 ATTTTTTTATGCATGCC-AACAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCC-
* * * * *
16879329 TTCTGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
642 TTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAAC
16879394 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
707 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
* *
16879459 AAAAATGGCATTGGCATGGCAGAGATATGAAGATGTGCGTAAA-CCACCTACCACCCTATCGATC
772 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
16879523 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGCGCCCACCCGCCCG
837 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG
*
16879573 TCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 -C-GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
16879638 CGAGGGTTACGACAGTAGGATTGGCAGCATGCAGCGAGGGACCCGACCGATCCCCGGCTTGCGCA
64 CGAGGGTTGCGACAGCAGGATCGACAGCACGCAGTGAGGGACCCGACCGATCCCCGGCTTGCGCA
* * * ** * **
16879703 TCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTTGTGCATTGACTTAGGCGTACAAAG
129 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
16879768 TTCATTCCCAGTCTAAGCATATGGAGTTCATTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
194 TTCATTCCCAGTCTAAGCATATGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
*
16879833 C-AGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCG
258 CGA-CAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTC-ACGGGACACCATCG
*
16879897 CCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGTCGAGGGGGGGTGTGCGCA
320 CC-GAGAACCTGACCGACGGTATTGGGGTTCCAGCGATCGAGGGGGTCGAGGGGGGGTGTGCGCA
*
16879962 CATGATGTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
384 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
16880027 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGTCAGTAGCCATTAAAAT
449 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
16880092 ATCTCAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
514 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * *
16880157 ATGTTTTGGTGCTTGCCAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
579 ATTTTTTTATGCATGCCAACAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
16880222 CTAAAAAAATTTTAAAAAATTCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGA
644 CTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGA
* * *
16880287 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTCACAAGCCAAAA
709 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA
*
16880352 AAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
774 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * *
16880417 CGGTTTGCGCATCCCGCCTCTCTGGCAAGCGTAGTGTCCGCCTG-CC-
839 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG
16880463 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-----CAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * *
16880523 AGGGTTGCGATAGCAGGATCGACATCACGCAGTGAGGGACCCAGA-CGATCCCCGGCTTGTGCAT
66 AGGGTTGCGACAGCAGGATCGACAGCACGCAGTGAGGGACCC-GACCGATCCCCGGCTTGCGCAT
* ** * * *
16880587 CCCGCCCCTCTGGTCGACTGAATGCCTGCACGCTCGTCTCGTTGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
16880652 TTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCG
195 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * *
16880717 ACAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCACTGAGACACCATCGCCG
260 ACAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCAC-GGGACACCATCGCCG
* * * * *
16880782 AAGAACCTGACTGGCGGTATAGGGGTTTC-GACGATTGAGGGGG--G-GCGGGGGGTGTGCGCAC
323 -AGAACCTGACCGACGGTATTGGGGTTCCAG-CGATCGAGGGGGTCGAG-GGGGGGTGTGCGCAC
* * *
16880843 ATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAA
385 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
16880908 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCGAGTAGCCATTAAAGT
450 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGT
*
16880972 GCCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
514 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
16881036 ATTTTTTTATGCATGCCAACAAAAATAGAATGATCAAGTCTACCAAGTTTGGGGCAAAAACTCCT
579 ATTTTTTTATGCATGCCAAC-AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
16881101 TCTAAAAAAA-TTTGAAAAATCCCGAACCTTGAAATGTTTTAAAAATCTTGAAAAATAGAAAACG
643 TCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACG
16881165 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGA
708 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGA
16881230 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
773 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
16881295 ACGGCTTGTGCATCCCGCTTCTCTGGCCGACGTAATGCCCACCCGCTCGCC
838 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGC-C-CG
* * * * *
16881346 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * *
16881411 AGGGTTGTGACAGCAGGATCGACAGCACGCAGTG-GTGGACTCGACCGATCCTCGGCTTGCGCAT
66 AGGGTTGCGACAGCAGGATCGACAGCACGCAGTGAG-GGACCCGACCGATCCCCGGCTTGCGCAT
* * *
16881475 CCCGTCCCTCTGGCCG-GTCGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
130 CCCGCCCCTCTGGCCGACT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
16881539 TTCATTCCCAGTCTAAG
194 TTCATTCCCAGTCTAAG
16881556 ATCATACCAG
Statistics
Matches: 1755, Mismatches: 196, Indels: 65
0.87 0.10 0.03
Matches are distributed among these distances:
879 270 0.15
880 200 0.11
881 4 0.00
882 123 0.07
883 191 0.11
884 2 0.00
887 4 0.00
888 179 0.10
889 1 0.00
891 207 0.12
892 445 0.25
893 119 0.07
894 10 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AGGGTTGCGACAGCAGGATCGACAGCACGCAGTGAGGGACCCGACCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA
CAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGTATTTTTCTTCACGGGACACCATCGCCGAGA
ACCTGACCGACGGTATTGGGGTTCCAGCGATCGAGGGGGTCGAGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TATGCATGCCAACAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGC
ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG
Found at i:16880677 original size:26 final size:26
Alignment explanation
Indices: 16880641--16880693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16880631 GTTGACTTAG
*
16880641 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16880667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16880693 G
1 G
16880694 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16881595 original size:159 final size:159
Alignment explanation
Indices: 16881359--16881873 Score: 746
Period size: 159 Copynumber: 3.2 Consensus size: 159
16881349 TCGTTTCATC
* * * *
16881359 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATCGAGGGTTGTGACAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAG
* * * *
16881424 CAGGATCGACAGCACGCAGTGGTGGA-CTCGACCGATCCTCGGCTTGCGCATCCCGTCCCTCTGG
66 CAGGATCGACAGCACGTAGTGGGGGACCT-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
16881488 CCGGTCGAGCGCCCGCACGCTCATTTCGTG
130 CCGGTCGAGCGCCCGCACACTCATTTCGTG
* *
16881518 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTCTGACAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAG
* *
16881583 CAGGATCAACAGCACGTAGTGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
66 CAGGATCGACAGCACGTAGTGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
16881648 CGGTCGAGCGCCCGCACACTCGTTTCGTG
131 CGGTCGAGCGCCCGCACACTCATTTCGTG
* * * **
16881677 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGAGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAG
* ** * * * * *
16881742 CAGGATTGGTAGCACGTAGAGGGGGACCTAATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGC
66 CAGGATCGACAGCACGTAGTGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
16881807 C-GACTGAGCGCCCGCACACTCATTTCGTG
131 CGGTC-GAGCGCCCGCACACTCATTTCGTG
16881836 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16881874 CATACAAAGT
Statistics
Matches: 321, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
158 2 0.01
159 317 0.99
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAG
CAGGATCGACAGCACGTAGTGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGTCGAGCGCCCGCACACTCATTTCGTG
Found at i:16883662 original size:26 final size:26
Alignment explanation
Indices: 16883626--16883676 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16883616 GTTGACTTAG
16883626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16883652 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16883677 CTATGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16884535 original size:26 final size:26
Alignment explanation
Indices: 16884505--16884557 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16884495 GTTGACTTAG
16884505 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
16884531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
16884557 G
1 G
16884558 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:16885363 original size:889 final size:888
Alignment explanation
Indices: 16881656--16886317 Score: 6514
Period size: 888 Copynumber: 5.3 Consensus size: 888
16881646 GCCGGTCGAG
* * * * *
16881656 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * ** * *
16881721 CCGGACCGAGGATTGAGGTAGCAGGATTGGTAGCACGTAGAGGGGGACCTAATCGATCCCCGACT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* *
16881786 TGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
** * **
16881851 ACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * *
16881916 GGTTGCAGCAGCACATGCTTGGCTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCACCGAGACACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
*
16881981 ATCGTCGGAGAACCTGACCGACGCCATTGGGGTTCCGGCGATCGGGGGGTGCCGGGGGGTGTGCG
326 ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGG-GCCGGGGGGTGTGCG
* *
16882046 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAACCCT
390 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
16882111 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAA
455 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
16882176 ATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
520 GTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
16882241 GAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAAAT
584 GAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * * *
16882306 CCATCTAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
648 CCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
16882371 ACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCT
713 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
16882436 AGAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGA
778 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
16882501 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGACCGTC
843 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
16882547 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATGCGGAGTTCATTCCCAATCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
16882612 CTGGATCGAGGGTTGCGGTAGTAGGATCAGC-GACACACAGAGGGGGACCCGACCGATCTCCGGC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG-CACGCAGAGGGGGACCCGACCGATCCCCGGC
* * ** * *
16882676 TTGCGTATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGTA
130 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * *
16882741 TACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTTCCAGTCTAAGATCGGACTGGAACGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * **
16882806 GGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGACAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACAC
* * * * * * *
16882871 CATCGTCGAAGAATCTTAACGACGACACTGGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCG
325 CATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCG
* *
16882936 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAAACT
390 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
16883001 TGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAA
455 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
16883066 GTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAATTTTTAGCT
520 GTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
16883131 GAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTATCAAATTTGGGGCCAAAACTC
584 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * * *
16883196 TTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAA
649 CTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
16883261 GGAGTCGTCTTGCCATGAAA-TTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTA
714 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
16883325 AAAAAATGGGATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
779 GAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
16883390 CCACGGCTTGCGCATCCAGCCTTTCTGGCTGGCGTAGTGCCTGCC
844 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
16883435 TGCCTGCCCGTTCGCTTCATCGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * ** * * *
16883500 CCGAACTGATGGTTATGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCTCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * **
16883565 TGCGCATCCCGCCCCTCTGGCCGACTGAACGTCCGCACGCTTGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
**
16883630 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACTAT-GGACCGGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * *
16883694 GGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
* * * ** * * * *
16883759 ATCGTCGGAGAACCTAACC-AGCGGCATTGGCGTTCCGATGATCGAGCGTGTCGGGGGGTGTGCG
326 ATCGTCGGAGAACCTGACCGA-CGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCG
* *
16883823 CA-ATGATGTGAGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
390 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
16883887 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
455 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
16883952 -TGT-TG-AATGGGACAC-TTTTTCAAAT-GTCAC-AAATCTTGTACACTTTGAGTTCTTAGCTA
520 GTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
16884011 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTGCCAAGTTTGGGGCCAAAAATCC
585 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* ** *
16884076 TTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
650 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * *
16884141 GAGTCGTCTTGCCATGAATCTTCACATGAAGGCTTAACGGACCATAGCATGAATTTACAAGCCAG
715 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
*
16884206 AAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
780 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
16884271 CACGGCTTGCGCATCCCGCCTCTC-AGCCGGCGTAGTGCCCGCC
845 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
16884314 CGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * * * *
16884379 TCAAACCGAGGGTTACGGCAGCAAGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
16884444 TGCGTATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* *
16884509 ACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * *
16884574 GGTTGTGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGACACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
* * * * * *
16884639 ATC-TCGAAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGAAGGTGTGCG
326 ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGTGTGCG
* *
16884703 CAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
390 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
16884768 TGAGAACTCACATCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
455 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
16884833 GTGTCCGAAATGGTGACACTTTTTTCAAATGGTCACAAGATCTTGCACACTTCGAGTTTTGAGCT
520 GTGTCTGAAATGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
16884898 GAATTTTTTTCTGCTTGCCTGA-AAAAATACAAGGACCACGTCTACCAAGTTTGGGGCAAAAAAT
584 GAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * * *
16884962 CCTTTTGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGCTTCAAAAATCCTGTAAAATAGAA
648 CCTTCTGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
16885026 AATGAGTCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGC
712 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
16885091 CAGAAAAGTGGCATTGGCATGGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCG
777 CAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
16885156 ATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
842 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
16885203 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCCTACGGAGTTCATTCTCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
16885268 CCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATGCCAGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * * * * *
16885333 TGCGCATCCTGTCCCTCTGGCTGGCTGAGCGCCCGTACGTTCGTTTCGTCGGTTGATTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * *
16885398 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCAAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* ** * * *
16885463 GGTTGCGTCAGCACATGCTGGGCTCGAACATTTGCTGGTGCCGTATTTTTCTTCGCCTGGACACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
* * **
16885528 ATCATCGGAGAACCTGACCAACGACATTGGGGTTCCATCGATCGGGGGGGCC-GGGGGTGTGCGC
326 ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGC
*
16885592 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
391 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
16885657 GAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAT
456 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
16885722 TGTCTGAAATGGGAACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTA
521 TGTCTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
16885787 AATTTTTTTATGCATGCCAACAAAAATACACGGATCACGTCTACCATGTTTGGGGCCAAAAATCC
585 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * *
16885852 TTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAT
650 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
16885917 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCAA
715 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
*
16885982 AAAAATGGCATTGGCATGGTAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
780 AAAAATGGCATTGGCATGGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
16886047 CCATGGCTTGCGCATCTCACCTCTTTGGCTGGCGTAGTGCCCGCC
844 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * ** ** *
16886092 TGCCCGCCCGCTCGTTTCGTCTTTTGGCTTAGGCATATAGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
16886157 TCGGACCGAGGGTTGCAGCAGTAAGATTGACAGCATGCAGAGGGGGACTCGACCGATCCCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * *
16886222 TGCACATCCCGCCCCCTCTAGCC-AGCTAAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
131 TGCGCATCCCG-CCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * *
16886286 ATACGGAGTTCATTCTCTGTCGAAGCATACGG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGG
16886318 TGTAGACTCC
Statistics
Matches: 3322, Mismatches: 424, Indels: 51
0.87 0.11 0.01
Matches are distributed among these distances:
879 430 0.13
880 209 0.06
881 131 0.04
882 10 0.00
883 4 0.00
884 6 0.00
885 8 0.00
886 131 0.04
887 128 0.04
888 1008 0.30
889 629 0.19
890 310 0.09
891 318 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
TCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGA
AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
Found at i:16885423 original size:26 final size:26
Alignment explanation
Indices: 16885394--16885446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16885384 GTTGATTTAG
16885394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16885420 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16885446 G
1 G
16885447 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16886397 original size:4 final size:4
Alignment explanation
Indices: 16886388--16886433 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
16886378 ATATTTAACA
* * *
16886388 AAAC AAAC AAAA AAAC AAAC AAAC AAA- AAAA AAAC AAAA AAAC AAA
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAA
16886434 ACGAAAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:16886440 original size:19 final size:19
Alignment explanation
Indices: 16886387--16886434 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
16886377 AATATTTAAC
16886387 AAAACAAACAAAAAAACAAA
1 AAAACAAA-AAAAAAACAAA
*
16886407 CAAACAAAAAAAAAACAAA
1 AAAACAAAAAAAAAACAAA
16886426 AAAACAAAA
1 AAAACAAAA
16886435 CGAAAATAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAACAAAAAAAAAACAAA
Found at i:16886511 original size:12 final size:12
Alignment explanation
Indices: 16886480--16886559 Score: 63
Period size: 12 Copynumber: 6.7 Consensus size: 12
16886470 GTCGAACTGC
*
16886480 CCCGACCAATTA
1 CCCGACCAACTA
* *
16886492 CCCAACCAACTC
1 CCCGACCAACTA
*
16886504 CCCGACCAATTA
1 CCCGACCAACTA
*
16886516 CCCAACCAACT-
1 CCCGACCAACTA
* *
16886527 CTCTGACCAATTA
1 C-CCGACCAACTA
**
16886540 CCTTACCAACTA
1 CCCGACCAACTA
16886552 CCCGACCA
1 CCCGACCA
16886560 GCCACCCTAT
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
11 1 0.02
12 49 0.96
13 1 0.02
ACGTcount: A:0.33, C:0.46, G:0.05, T:0.16
Consensus pattern (12 bp):
CCCGACCAACTA
Found at i:16886548 original size:28 final size:24
Alignment explanation
Indices: 16886474--16886559 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
16886464 TACGACGTCG
16886474 AACTGCCCCGACCAATTACCCAACC
1 AACT-CCCCGACCAATTACCCAACC
16886499 AACTCCCCGACCAATTACCCAACC
1 AACTCCCCGACCAATTACCCAACC
* * **
16886523 AACTCTCTGACCAATTACCTTACC
1 AACTCCCCGACCAATTACCCAACC
*
16886547 AACTACCCGACCA
1 AACTCCCCGACCA
16886560 GCCACCCTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 50 0.93
25 4 0.07
ACGTcount: A:0.33, C:0.45, G:0.06, T:0.16
Consensus pattern (24 bp):
AACTCCCCGACCAATTACCCAACC
Found at i:16886742 original size:14 final size:13
Alignment explanation
Indices: 16886722--16886752 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
16886712 ATTTTCGACG
16886722 CAAAAAAAAAAAC
1 CAAAAAAAAAAAC
16886735 CAAAAAAAAAAAC
1 CAAAAAAAAAAAC
16886748 CAAAA
1 CAAAA
16886753 CAGAAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAAAC
Found at i:16887421 original size:38 final size:38
Alignment explanation
Indices: 16887342--16887431 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 38
16887332 GGACTGGATT
* * * * *
16887342 GAACCGGTCAGATTGCCCGGACCGCCGATCCGACTGCC
1 GAACCGATCAGATCGCCCGAACCGCCGATCCAACCGCC
* *
16887380 GAACCGATTAGATCGCCCGAACCGCCGATCCAACCGTC
1 GAACCGATCAGATCGCCCGAACCGCCGATCCAACCGCC
*
16887418 GAACCGGTCAGATC
1 GAACCGATCAGATC
16887432 ACCGGGACCA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.23, C:0.38, G:0.26, T:0.13
Consensus pattern (38 bp):
GAACCGATCAGATCGCCCGAACCGCCGATCCAACCGCC
Found at i:16887949 original size:16 final size:15
Alignment explanation
Indices: 16887928--16887989 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 15
16887918 AAACCCCTAA
16887928 AAATCCAAAATCCATT
1 AAATCCAAAATCC-TT
* **
16887944 AAATCCAAAACCCCCG
1 AAATCCAAAA-TCCTT
16887960 AAATCCAAAATCCTT
1 AAATCCAAAATCCTT
*
16887975 GAAATCCAAAGTCCT
1 -AAATCCAAAATCCT
16887990 AAAAAAATCC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
15 2 0.05
16 33 0.89
17 2 0.05
ACGTcount: A:0.45, C:0.31, G:0.05, T:0.19
Consensus pattern (15 bp):
AAATCCAAAATCCTT
Found at i:16888374 original size:15 final size:16
Alignment explanation
Indices: 16888356--16888388 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
16888346 AAATATTTTT
16888356 TAATA-AAAAAAAAAA
1 TAATACAAAAAAAAAA
16888371 TAATACTAAAAAAAAAA
1 TAATAC-AAAAAAAAAA
16888388 T
1 T
16888389 CTTTTTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
17 11 0.69
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
TAATACAAAAAAAAAA
Found at i:16889074 original size:21 final size:21
Alignment explanation
Indices: 16889049--16889094 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
16889039 CAACAGTTGG
*
16889049 ATTTAATTGATTTTATTTTAT
1 ATTTAATTGAATTTATTTTAT
* *
16889070 ATTTAATTTAATTTCTTTTAT
1 ATTTAATTGAATTTATTTTAT
16889091 -TTTA
1 ATTTA
16889095 TTTTTTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTAATTGAATTTATTTTAT
Found at i:16900137 original size:49 final size:49
Alignment explanation
Indices: 16900060--16900495 Score: 562
Period size: 49 Copynumber: 8.9 Consensus size: 49
16900050 AATTTGAAAA
*
16900060 CAGATGAGAAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
1 CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
* *
16900109 CAGATGAGAATTTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTC
1 CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
*
16900158 CAAGATGAGAA-TTTTAAAGTTGTCGAGCCTCTGTTGAGAGGAGCTTTTT
1 C-AGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
* * *
16900207 CAAAAGAGAATTTTTAAAGTTATGGAGCCTCTGTTGAGAGGAGCTTTTT
1 CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
* * * * * * *
16900256 CCATATGAG-ATTTTTAAAGTTGTGAAACCTCTGCTAAGAGTAGTTTTTTTT
1 -CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAG--CTTTTT
16900307 CAAGA-GAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
1 C-AGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
* * * * *
16900356 CCAAATGAG-A-TTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTC
1 -CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
16900404 CAGATGAG-ATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
1 CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
* * *
16900452 CCAGATGAG-ATTTTTAAAGTTGTTGAGCCTCTATTAAGAGGAGC
1 -CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGC
16900496 CATTTTCTGT
Statistics
Matches: 338, Mismatches: 38, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
47 8 0.02
48 75 0.22
49 196 0.58
50 23 0.07
51 36 0.11
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (49 bp):
CAGATGAGAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTT
Found at i:16900687 original size:12 final size:12
Alignment explanation
Indices: 16900670--16900701 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
16900660 AATATTTACC
16900670 AAAACAAACAAA
1 AAAACAAACAAA
16900682 AAAACAAACAAA
1 AAAACAAACAAA
16900694 AAAACAAA
1 AAAACAAA
16900702 ACGAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAACAAA
Found at i:16902567 original size:26 final size:26
Alignment explanation
Indices: 16902537--16902586 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16902527 TGACTTAGGC
**
16902537 ATACGGAGTTCATTCTTAGTCTAATT
1 ATACGGAGTTCATTCCCAGTCTAATT
16902563 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
16902587 GATCGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAATT
Found at i:16904228 original size:861 final size:863
Alignment explanation
Indices: 16900808--16904904 Score: 5620
Period size: 861 Copynumber: 4.7 Consensus size: 863
16900798 CCCAGTCTAA
* * * * *
16900808 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * ** *
16900873 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGACACCATCGCCAGAGAACTTGACCGGC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGCCAGAGAACCTGACCGGC
*
16900938 GGCATTGGGGTTCC-AGTGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGC
131 GGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16901001 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16901066 AGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-TAGAAATGCGGACACT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACT
16901130 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
16901195 AAAAAAATACAAGGATCACGTCT-GCAATGTTTTGGGCCAAAACTCCATCTAAAAAAATTTTAAA
389 ACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAA
** * *
16901259 AAATCTCGAACCGTAAAATA-TTTGGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
453 AAATCTCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * ** *
16901323 AACTTCCCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGCCATTCACAC
517 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCAT
* * *
16901388 GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCC
582 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
16901453 GCCTCTCTCGTCGGTGTAGTGCCTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
647 GCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
16901518 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGTTCGATAGCACGC
712 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
16901583 AGAGGGGGA-CTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
777 AGA-GGGGACCT-GGCCGATCCCCGACTTGCGAATCCCGCCACTCTGGCCGACTGAGCGCCCGCA
16901647 CGCTCGTTTCATGGGTTGACTTAG
840 CGCTCGTTTCATGGGTTGACTTAG
* * **
16901671 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* *
16901736 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGTCAGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGCCAGAGAACCTGACCGGC
* *
16901801 GGCATTGGGGTTCCGAGGATCGGGGGGGCCGGGGTGGGTGTGCGCACATGATGTTCGATGGGTGC
131 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
16901866 TGGTGCTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16901931 AGCGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
16901996 TTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
16902061 AAAAAATACAAGGATCACGTCTGCCAAGTTTCGGACCAAAACTCCTTCTAAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAA
* * ** *
16902126 ATCCCAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
455 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* ** *
16902191 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACAGT
520 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCATGGC
* *
16902256 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTAGCGCATCCCGCC
585 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * *
16902321 TCTC-GGCCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTTGTTGGTTGGCTTAGGCGTACGGA
650 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** ** * * * * *
16902385 GTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAGTAGGATGGGCAGCATGCAGA
715 GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * * * * *
16902450 GAGGGACTTGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAATGAGCGCCCGTACGCT
780 G-GGGACCTGGCCGATCCCCGACTTGCGAATCCCGCCACTCTGGCCGACTGAGCGCCCGCACGCT
*
16902515 CGTTTCATGTGTTGACTTAG
844 CGTTTCATGGGTTGACTTAG
** *
16902535 GCATACGGAGTTCATTCTTAGTCTAATTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTC------TA---AG---------A-TC--AGACCGGACCA-A-
** * *
16902600 CGAAGGTTGCAGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTC-CCTGGG
43 -G--GGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACC-GGG
* * * *
16902664 ACACCATCGCCTGAGAACCTGACGGGCGGCATTGGGGTTCTGAAGATCGGGGAGGGCC-GGG-GG
104 ACACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGG-GGGCCGGGGTGG
16902727 GTGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
167 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
16902791 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
232 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
16902856 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGCAAAA-CCTGTACACTTCGAGT
297 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGT
* * *
16902920 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTGCCAAGTTTGGGCC
361 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
16902985 CAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACATTAAAAAGTTTCAAAAATTGTGAAA
426 CAAAACTCCTTCTAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAA
16903049 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
490 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
**
16903114 TACAAGCTAGAAAAATGAAATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
555 TACAAGCTAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * ** * *
16903179 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCAGGCCGGTGCAGTGCCTGCTTGCCCGCTCAT
620 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCAC
* * *
16903244 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGACCAGACTGAGG
685 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGG
* * * * * **
16903309 GTTGCGGCAACAGGATTGACATCACGCAGAGGAGGACCCGGTCGATCCTTGACTTGCGAATCCCG
750 GTTGCGGCAGCAGGATCGACAGCACGCAGAGG-GGACCTGGCCGATCCCCGACTTGCGAATCCCG
* *
16903374 CCACTCTGGCCGACTGAGCG-CCACACGCTCGTTTCGTGGGTTGACTTAG
814 CCACTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
16903423 GCATACGGAGTTCATTCCCAGTC-AAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
** * * **
16903487 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGAT
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGCCAGAGAACCTGACCGGC
*
16903552 GGCATTGGGGTTCCGACGATCGGGGGGTCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
16903617 GGTACTTGGCCATTATACTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAGA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
16903682 -AGCATTTGAGATTTTACGGGTTTGCTACCAGTAGCCATTTAAGTGTCTGAAATGGGGACATTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
16903746 TTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAA
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
*
16903811 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAA
*
16903876 ATCTGGAACCGTAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
455 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
16903940 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAATTGGCATTGGCATGGC
520 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCATGGC
* * *
16904005 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCGCC
585 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * *
16904070 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGA
650 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
16904135 GTTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAGCACACAGA
715 GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* *
16904200 GTGGGACCTGGCCGATCCTCGGCTTGCGAATCCCGCCACTCTGGCCGACTGAGCGCCCGCACGCT
780 G-GGGACCTGGCCGATCCCCGACTTGCGAATCCCGCCACTCTGGCCGACTGAGCGCCCGCACGCT
*
16904265 CGTTTCGTGGGTTGACTTAG
844 CGTTTCATGGGTTGACTTAG
* * *
16904285 GCATAGGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGACTAAGATCGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CCGGACCAAG---GG--T---T
* * * * *
16904350 CGGGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCATATTATTCTTCACCGGGA
48 -----G-T--GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGA
* * * * *
16904415 CCCCATCACCGGAGAACCTGACCGGTGGCATTTGGGTTCCGACGATCGGGGGGGCCGAGGGT-GG
105 CACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGTGGG
* * *
16904479 TGTGCGGACATGATGTGCGGTGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
168 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
16904544 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
233 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
16904609 ATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
298 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
16904674 TTAGCTGAATTTTTTTGTGCACGCCTACAAAAATACAGGGACCACGTCTACCAAGCTTGGGGCCA
363 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ***
16904739 AAATTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTTTAAATCGTGAAAAAT
428 AAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
16904804 AGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTAC
493 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
16904869 AAGCTAGAAAAATGGCATTGGCATGGCAAAAATATG
558 AAGCTAGAAAAATGGCATTGGCATGGCAAAAATATG
16904905 CAAAGAACCT
Statistics
Matches: 2893, Mismatches: 261, Indels: 132
0.88 0.08 0.04
Matches are distributed among these distances:
859 4 0.00
860 11 0.00
861 552 0.19
862 204 0.07
863 139 0.05
864 215 0.07
865 454 0.16
866 14 0.00
867 2 0.00
868 2 0.00
869 1 0.00
870 3 0.00
873 10 0.00
876 2 0.00
878 3 0.00
881 2 0.00
882 1 0.00
883 2 0.00
885 10 0.00
886 2 0.00
887 2 0.00
888 470 0.16
889 274 0.09
890 287 0.10
891 227 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (863 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGCCAGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCATGGCA
AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
GGGACCTGGCCGATCCCCGACTTGCGAATCCCGCCACTCTGGCCGACTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAG
Done.