Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 89 of 160
Found at i:16905336 original size:481 final size:481
Alignment explanation
Indices: 16904427--16905385 Score: 1553
Period size: 481 Copynumber: 2.0 Consensus size: 481
16904417 CCATCACCGG
** * *
16904427 AGAACCTGACCGGTGGCATTTGGGTTCCGACGATCGGGGGGGCCGAGGGTGGTGTGCGGACATGA
1 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGTGGTGTGCGCACATGA
* *
16904492 TGTGCGGTGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
66 TGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
16904557 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCACTAGCCATTAAAGTGTCTA
*
16904622 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
196 AAATGAGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
16904687 TTTGTGCACGCCTACAAAAATACAGGGACCACGTCTACCAAGCTTGGGGCCAAAATTCCTTCTAA
261 TTTATGCACGCCAACAAAAATACAAGGACCACGTCTACAAAGCTTGGGGCCAAAACTCCTTCTAA
** *** *
16904752 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTTTAAATCGTGAAAAATAGAAAATGAGTCG
326 AAAAATTTTAAAAAATCCCGAACAATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
16904817 TCTTGCCATGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTAGAAAAAT
391 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAAT
*
16904882 GGCATTGGCATGGCAAAAATATGCAA
456 GGCATTGGCATGGAAAAAATATGCAA
*
16904908 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCTG-GGAG-GGTGTGCGCACAT
1 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGAGG-GTGGTGTGCGCACAT
*
16904971 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
64 GATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16905036 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCTACTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCACTAGCCATTAAAGTGTC
*
16905101 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATT
194 TAAAATGAGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
16905166 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTGTACAAAGTTTGGGGCTAAAACTCGTTCT
259 TTTTTATGCACGCCAACAAAAATACAAGGACCACGTCTACAAAGCTTGGGGCCAAAACTCCTTCT
* **
16905231 GAAAAAATTTTAAAAAATCCCGAGGAATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
324 AAAAAAATTTTAAAAAATCCCGAACAATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
16905296 CGTCTTGCCATGAAACTTCGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAA
389 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAA
16905361 ATGGCATTGGCATGGAAAAAATATG
454 ATGGCATTGGCATGGAAAAAATATG
16905386 TAGATGTGCC
Statistics
Matches: 439, Mismatches: 37, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
481 436 0.99
482 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (481 bp):
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGTGGTGTGCGCACATGA
TGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCACTAGCCATTAAAGTGTCTA
AAATGAGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTATGCACGCCAACAAAAATACAAGGACCACGTCTACAAAGCTTGGGGCCAAAACTCCTTCTAA
AAAAATTTTAAAAAATCCCGAACAATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAAT
GGCATTGGCATGGAAAAAATATGCAA
Found at i:16906590 original size:26 final size:26
Alignment explanation
Indices: 16906539--16906591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16906529 GTTGACTTAG
**
16906539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
16906565 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
16906591 G
1 G
16906592 TTCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:16907456 original size:26 final size:26
Alignment explanation
Indices: 16907420--16907479 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
16907410 GTTGACTTAG
16907420 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
16907446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16907472 G-AT-CGGAG
1 GCATACGGAG
16907480 CGGACCAAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16908734 original size:422 final size:422
Alignment explanation
Indices: 16907950--16908743 Score: 1121
Period size: 422 Copynumber: 1.9 Consensus size: 422
16907940 AAACGAGTCG
**
16907950 TCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCAGAAAAAT
1 TCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
** *
16908015 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
66 GGCATTGGCATGGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** ***
16908080 TTGCGCATCCCGCCTCTCTTGTTGACGTAATGCCCGTCCGCCCGCCCGCTCATTTCATCGGTTGG
131 TTGCACATCCCGCATCTCTGGCCGACGTAATGCCAACCCGCCCGCCCGCTCATTTCATCGGTTGG
* * ** *
16908145 CTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGTAGGAT
196 CTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGAT
* * * * *
16908210 TCGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGTTTACGCATCCTACCCTTCTGGCCGACTG
261 TCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCTTCTAGCCGACTG
* ** * *
16908275 GGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTCGTCGAGACACCATCG
326 AGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCTTCGTCGAGACACCATCG
16908340 TCGAAGAACTTGACCTAGGAATACGGAGTTCA
391 TCGAAGAACTTGACCTAGGAATACGGAGTTCA
*
16908372 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
1 TCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
16908437 GGCATTGGCATGGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
16908502 TTGCACATCTCGCATCTCTGGCCGGCGTAGTGCCAACCCGCCCGCTCGCTCGTTTCGTTGGTTGG
131 TTGCACATCCCGCATCTCTGGCCGACGTAATGCCAACCCGCCCGCCCGCTCATTTCATCGGTTGG
* *
16908567 CTTAGGCAGATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTG-TATCTA-CAGG
196 CTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGA--TAGCAGG
* * * *
16908630 A-TCGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCGCC-TCTAGCCT
259 ATTC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCAC-CCTTCTAGCC-
*
16908693 G-CTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
321 GACTGAGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
16908744 ATTCCCAGTC
Statistics
Matches: 324, Mismatches: 43, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
421 3 0.01
422 316 0.98
423 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (422 bp):
TCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
GGCATTGGCATGGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCACATCCCGCATCTCTGGCCGACGTAATGCCAACCCGCCCGCCCGCTCATTTCATCGGTTGG
CTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGAT
TCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCTTCTAGCCGACTG
AGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCTTCGTCGAGACACCATCG
TCGAAGAACTTGACCTAGGAATACGGAGTTCA
Found at i:16911391 original size:26 final size:26
Alignment explanation
Indices: 16911362--16911414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16911352 GTTGACTTAG
*
16911362 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCACTCTAA
* *
16911388 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTAATTCCCACTCTAA
16911414 G
1 G
16911415 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCACTCTAA
Found at i:16912098 original size:889 final size:889
Alignment explanation
Indices: 16908372--16918942 Score: 13548
Period size: 888 Copynumber: 12.0 Consensus size: 889
16908362 ACGGAGTTCA
16908372 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
**
16908437 GGCATTGGCATGGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** *
16908502 TTGCACATCTCGCATCTCTGGCCGGCGTAGTGCCAACCCGCCCGCTCGCTCGTTTCGTTGGTTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * ***
16908567 CTTAGGCAGATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTATCTA-CAGGA
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC-AGCAGGA
* * * * * *
16908631 TCGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCGCCTCTAGCCTGCT
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16908696 GAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGCAT
325 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
16908761 ACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCAT-GGCTC
390 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTC
* * ** * * *
16908825 AGGCATATGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTAACCGGCGAC
454 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGC
* * * *
16908890 ATTGGGGTTCC-AGCAATCGGGGGGGCC-GGGGGGTCTGCACACATGATGTGCGATGGGTGCTGG
519 ATTGGGGTTCCGA-CGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
16908953 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTAAAGA
582 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16909018 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTT
647 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
16909083 TCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAA
712 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
16909148 AAATACAAGGATCACGTCTACCATGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATC
777 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* * * *
16909213 CCCAACCCTAAAAAGTTTCGAAAATCATAAAAAATAGAAAACGAGTCG
842 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
16909261 TCTAGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTGAAAAGCCAAAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* * * *
16909326 GGCATTTGCACGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
16909391 TTGCGCATCCCACCTATCTAGCCAGCGTAGTGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * *
16909456 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGCAGCAGGG
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGA
** * * * * *
16909520 TCGGTAGTACGCAGAGGGGGACCC-AGTCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGAC
260 TCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
16909584 TGAGCGCCCGCACG--C---T--T--GTT---TT--G--T--GG-GTTGA----C--T-T-ACCA
324 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
16909622 TACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTACAGCTGCACATGCTGGGCTC
389 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
16909687 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGACACCATCGTCGAAGAAACTGACCTG-CGG
454 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACC-GACGG
* * * *
16909751 CATTGGGGTTGCGATGA-TCGGGGG-CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
518 CATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
16909814 ACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTGAAAGAG
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16909879 CATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * *
16909944 CGAATGGTTAAAAAATCTTGTACACTTTGCA-TTTTTAGGTGAATTTTTTTGTGCTTGCCAACAA
713 CAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
16910008 AAATGCAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAATC
777 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* * *
16910072 CCGAACTGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGTCG
842 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
16910120 TCTTGGCATGAAACTTCATATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
** *** *
16910185 TACATTGGCCCAGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
16910250 TTGTGCATCCCGCCTCTCTGGCTGGCATAGTGCACGCCCG--C-C-CGCTCGTTTCGTCGGTTAG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * ** * *
16910311 CTTAGGCATACGAAGTTCATTCCCAGTCTATGATCGGACTGGACTGAGGGTTGCGGTAGTAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
** * * * * * * * * *
16910376 CGGTAGCACGCAAATGGAGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCTGGCTA
261 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16910441 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGCATA
326 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** * * *
16910506 TAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGG
391 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * ** * * *
16910571 GCATGTGCTGGTGTCGTATTTTTCATCACCGGGACACCATCGTCGGAGAACCTAACTGACGGCAT
456 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCAT
* * * * * *
16910636 TAGAGTTCCGACAATCGGAGGGGCC-GGGGGGTGTGCGCATAAGATGTGCGATGGGTGCTGGTAC
521 TGGGGTTCCGACGATTGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
16910700 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
585 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
16910765 TTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCA
650 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
16910829 AATGGTCACAAAAACTTATACACTTTGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAA-AAACA
715 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-A
* * * * **
16910892 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCTAAAAAAATTTAAAAAAATCTT
779 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
* *
16910957 GAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCG
844 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
16911003 TCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* *
16911068 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
**** * * * * * * *
16911133 TTGCGCATCCTATTTCTCTGGCTGACGTAGTGCCGGCCCTCCCGCCCTCTCGTTTCATCGGTTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * ** * *
16911198 CTTATGCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCAGAAGGAGGATTGTGGCAGCAGGA
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGA
* * * **
16911262 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAAT
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16911327 GAGTGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCAT
325 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * *
16911392 ATGGAGTTCATTCCCACTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATACTAGGCTCG
390 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * **
16911457 GGCATGTGCTGGTGCCGTATTTTTTTTCGTCGGGACACCATTGCCGGAGAACCTGACTAACGGCA
455 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCA
* * *
16911522 TTGGGGTTCCGACGATTGGGAGGGCCGTGGGGGTGTGCGCACATGACGTGTGATGGGTGCTGGTA
520 TTGGGGTTCCGACGATTGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
16911587 CTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTGGGAACTCACA-CACCTTAAAGAGC
584 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16911651 ATTTGAGATTTTACTGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
649 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16911716 AAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CATAGAAA
714 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAA
* * * *
16911780 AATACAGGGACCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAAAAAATCC
778 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * ** *
16911845 CGAACCTTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
843 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16911892 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AACAAA
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA-AAA
* * * *
16911956 TGGCATTAGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGA
65 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * ** * *
16912021 CTTGCGCATCCCGCCTATCTGGCCAACGTAGTGCTCGCCCGTTCGCTCGCTCATTTCGTCAGTTG
130 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * ** * * *
16912086 GCTTAGGCATACGGAGTTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTGTGGCCGTAGGA
195 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* ** * * ** *
16912151 TTGACAGCACATAGAGGGGGACCCGGCTGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
16912216 GAGCGCCCGTACGTTCGTTTCATGGGCTGACTTAGGCATACGGAGTTTATTCCCAGTCCAAGCAT
325 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** *
16912281 ACGGAGTTCATTCCCAGTCTAAGATATGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCG
390 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * *
16912346 GGCATGTGCTGGTGCTGAATTTTTCTTCGTCGGGACACTATTGCCAGAGAACCTGACCGACGGTA
455 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCA
* *
16912411 TTAGGGTTCCGGCGATTGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
520 TTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16912475 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGGAAGTCACACCCCCTTAAAGAGC
585 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGC
* * *
16912539 ATTTGAGATTTTACAGGTTTGCTGCGAGTAGCAATTAAAGTGTCTGAAATGGGGACACTCTTTTC
649 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
16912604 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTAA-AAA
714 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAA
* ** * * * * * *
16912668 AATACAAGGATCACATCTAATAAGTTTCGGGTCAAAACTCTTTGTAAAAAAATTTTGAAAAATCC
778 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * *
16912733 CGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCG
843 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
16912780 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCTAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* *
16912845 GGCATTGGCATGGCAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
16912910 CTCCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCGTCAGTTCG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * **** * *
16912975 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGCCATGGTAGCAAGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* ** * *
16913040 CGACAGCACGCAAAGGGGGACCCGGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTG
261 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16913105 AGCGCCCGCACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
326 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
16913170 CAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGTTGGGCTCGG
391 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * *
16913235 GCATGTACTGGTGTCGTATTTTTCTTCGCCTGGACACCATTGCCGGA-ATACCTGATCGACGGCA
456 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGA-ACCTGACCGACGGCA
* ** * *
16913299 TTGGGGCTT-TGACGATTGGGGGGTTGGGGGTGGTGTGCGCAGATGATGTGTGATGGGTGCTGGT
520 TTGGGG-TTCCGACGATTGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* ** * *
16913363 AGTTGGCCCTTATATTGGCCCTTTATCCCTCACCAAACCTC-AGGAACTCACACCCCCTTAAAAA
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGA
* *
16913427 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTT
647 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
16913492 TCAAATGGTCACAAGATCTTGTACAGTTCGAGTTTTTAGCTGAATTTCTTTGCGCATGCCTACAA
712 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
16913557 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
777 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* * *
16913622 TCGAAGCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
842 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * * **
16913670 TCTTGCCATGAAACTTAACGTGAAGGGTTAAGGAACCATTGTATGAATTTACAAGGTAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* ** * * * * *
16913735 GGCATTGACACAGCAAAAACATGAAGATGTGCCTAAACACACCTACCACCCTATCGGTCCATGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
16913800 TTGTGCATCCCGCCTCTCTGGCCAACGTAGTGCCCGCCCGCCCG-TCCGCTCATTTCGTCAGTTA
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT-CGCTCGTTTCGTCGGTTG
* * * * *
16913864 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCAGTAGCAGGA
195 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * ** * * *
16913929 TCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCAGCTTGGGCATCCCACCCCTCTGGCCGGCT
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
16913994 GAGCGCCCACACGCTCGTTTCGTGAGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
325 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
16914058 -C--AG---A----C---C----A----A----ACCGAGGGCTACGGTAGCACATGCTAGGCTCG
390 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * **
16914098 GGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGACACCATCACCGGAGAACCTGACCGGTGGCA
455 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCA
* * * *
16914163 TTAGGGTTCCTACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTA
520 TTGGGGTTCCGACGATTG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* **
16914228 CTTGGCCTTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
584 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16914293 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTC
649 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16914358 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
714 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
16914423 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCTGAAAAAATTTTATAAAATCTC
779 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
* * ** *
16914488 AAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
844 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
16914534 TCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG-AAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* * * * *
16914598 GGCATTGGCATGGCAGAGATATGAAGATGTGCCTAAACCCACATACCACTCTATTGATCCACTGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
16914663 TTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCGTCCGCCCG-TCCGTTCGTTTCGTCGGTTG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT-CGCTCGTTTCGTCGGTTG
* * *** * * * * *
16914727 GCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCA-AATTGAATCGACGGCTACGGTAGCAGG
195 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGG
* * * * * * **
16914791 ATCGGCAGCATGCAGAGGTGGACCC-AGTCGATCCCCGGCTTACGCATCCGGCCCCTCTGTTCGG
259 ATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** *
16914855 TTGAGCGCCCGCACGCTCAATTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
323 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
16914920 ATACAGATTTCATTGCCAGTCTAAGAACGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGCCT
388 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
16914985 CGGGCATGTGCTGGTGCCATATTTTTCTTCG-CTGGGTCACCATCGCCGGAGAACCTGACCGGCG
453 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGACACCATCGCCGGAGAACCTGACCGACG
* * *
16915049 GCATTGGGGTTCCGACGATCAGGGCGGCCGGGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCT
517 GCATTGGGGTTCCGACGAT-TGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* **
16915114 GGTACTTGGCCCTTTTATTGGTGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
580 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
16915179 GAGAATTTGAGATTTTACAAGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTT
645 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
16915244 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
710 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
16915309 AAAAATAGAAGTATCACGTCTACCAACTTTGGGGCCAAAAGTCCTTCTGAAAAAAATTTAAAAAA
775 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * *
16915374 TCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
840 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
16915424 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
*
16915489 GGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * *
16915554 TAGCGCATCTCTCGTCTCTGGCCGACGTAGTGCCCGCCCACCCACCCGCTCGTTTCGTCGATTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
** * *
16915619 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCAAGGGTTACGGCAGTAGGA
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGA
** * * ** * *
16915683 TCGACAAAATGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGTT
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16915748 GAGCGCTCGCACACTCGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCT----A-
325 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
16915808 A---AG---------A---T----T-GGACTGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCG
390 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * * *
16915853 GGCATGTACTGGTGCCGTATTTTTCTTCGCCAGGACACCATTGTCGAAGAACCTGACCAACGGCA
455 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCA
* * * *
16915918 TTGAGGTTCCGACGATTGGGGGGGTCGGGGGTGGTGTGCGCAGATGATGTACGATGGGTGCTGGT
520 TTGGGGTTCCGACGATT-GGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
16915983 ACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGGGAACTCACACCCCCTTAAAAAA
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
16916048 AATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGATACTTTTTT
648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16916113 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCTACAAA
713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
16916178 AATACAAGGATCACGTCTACCAAGTTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATC
778 AATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* * * *
16916243 TCGAACCGCAAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTTG
842 CCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
16916292 TCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGGCAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* *
16916357 AGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
16916422 TTGCGCATCCCGTCTTTATGGCCGGCATAGTGCCCACCTGCCCGCTCGCTCGTTTCGTTGGTTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
** *
16916487 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* ** * * * *
16916552 CGATAGCACATAAAGGGGGACCCAATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
261 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
16916617 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
326 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
16916682 CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGG
391 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* ** ** *
16916747 GCATGTGTTGGTGCC--ACATTTCTTCACCGGGACACCATCGCCAGAGAACCTGACC-AGCGGCA
456 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGA-CGGCA
*
16916809 TTGGGGTTCCGACGATCGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
520 TTGGGGTTCCGACGAT-TGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16916874 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTCGACAACTCACACCCCCTTAAAGAG
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16916939 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTT
648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** * *
16917004 CAAATGGTCACAAAATCTTGTACTGTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
16917069 AATACAAGGATCACGCCTA-AAAGTTTTGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCC
778 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * *
16917133 AGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCG
843 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16917180 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTA-AAAAA
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-AGAAAAA
* * * * *
16917244 TGGCATTGGAACGGTAGAAATATAAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGG
65 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
16917309 CTTGCGCATCCAGCCTCTCTGGTCGGCGCAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTT
130 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * * *
16917374 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAAACTGAGGGCTACGGTAGCAAGA
195 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* ** ** *
16917439 TCGATAGCACATAGAGGGGGACCCGACCGATCCAAGG-TTCGCGCATCCCGCCCTTCTGGCCGGC
260 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGC
* *
16917503 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTTCCAGTCTAAGCA
324 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
16917568 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTTGCCGCAACACATGCTAGGCTC
389 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * * * * *
16917633 GGGCATGTGCTGGCACCATATTTTTCTTTGTCGGGACACCTTCGTCGGAGAACTTGACTGACGGC
454 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGC
* * * *
16917698 ATTGGGGTTCCGACGATCGGGGGGGTCGGGGAGGGGTGTGCGCACATGATGTGTGATTGGTGCTG
519 ATTGGGGTTCCGACGAT-TGGGGGG-CCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
16917763 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAG
581 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16917828 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTT
646 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
16917893 TTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTGTGCATGCCAAC
711 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC
16917958 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
775 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * ** * *
16918023 TCTCGAATCGTAAAAAGTTTTTAAAATCATGTAAAATAGAAAACGAGTCA
840 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16918073 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
1 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
* * *
16918138 CGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGC
66 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
16918203 TTGTGCATCCTACCACTCTGGACGGCGTA--G--CGTCCGCCCGCTCG-T--TTT-GTCGGTTGG
131 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * * * *
16918260 CTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGTGACAGCAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
16918325 CGACAGCACGAAGA-GGGGACCCGACCGATCCTCTGCTTACGCATTCCGCCCCT-TGACCAGCTG
261 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16918388 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCTCAGTCTAAGCAGA
326 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
16918453 CAGAGTTCATTCCCAGTCTAAGCATACGGACC-GAAC-A---TTGCGACAGCACATGCTTGGCTC
391 CGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * ** **
16918513 GGGCATGAGTTGCTACCGTATTTTTCTTCGTCGGGACACCATCATCGGAGAACCTGACCGGTGGC
454 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGC
* * ** * * * * *
16918578 ATTGAGGTTCTGACGAACGGGGGGCTGGGGGGGTGGGCGCACGTGATGTGCCATGGGTGCTAGTA
519 ATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
16918643 CTTGG-CCTTATATTGGCCCCTTTTCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGC
584 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16918707 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
649 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16918772 AAATGGTCACAATATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCGAACAAAA
714 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*** * *
16918837 ATACAAGGATCACGTCTACCAAGTTTTTTTGCCAGAACTCCTTCTGAAAAAATTTTAAAAAATCA
779 ATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* *
16918902 CAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
843 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
16918943 CAAGTTTGGG
Statistics
Matches: 8455, Mismatches: 1072, Indels: 323
0.86 0.11 0.03
Matches are distributed among these distances:
855 134 0.02
856 4 0.00
857 2 0.00
859 195 0.02
860 268 0.03
861 2 0.00
862 129 0.02
863 273 0.03
864 460 0.05
865 18 0.00
866 343 0.04
867 48 0.01
868 372 0.04
869 2 0.00
870 5 0.00
871 4 0.00
872 2 0.00
873 3 0.00
874 6 0.00
875 46 0.01
876 230 0.03
877 38 0.00
878 5 0.00
879 7 0.00
880 90 0.01
881 6 0.00
882 192 0.02
883 363 0.04
884 160 0.02
885 84 0.01
886 9 0.00
887 427 0.05
888 1320 0.16
889 1036 0.12
890 1096 0.13
891 758 0.09
892 46 0.01
893 272 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
Found at i:16913169 original size:26 final size:26
Alignment explanation
Indices: 16913139--16913191 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16913129 GTCGACTTAG
16913139 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16913165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16913191 G
1 G
16913192 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16914931 original size:26 final size:26
Alignment explanation
Indices: 16914892--16914944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914882 GTTTACTTAG
*
16914892 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16914918 GCATACAGATTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16914944 G
1 G
16914945 AACGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16916687 original size:26 final size:26
Alignment explanation
Indices: 16916651--16916703 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16916641 GTTGACTTAG
16916651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16916677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16916703 G
1 G
16916704 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16917575 original size:26 final size:26
Alignment explanation
Indices: 16917539--16917591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16917529 GTTGACTTAG
* *
16917539 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16917565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16917591 G
1 G
16917592 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16924541 original size:26 final size:26
Alignment explanation
Indices: 16924511--16924562 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924501 AGTTGACTTG
*
16924511 GGCATACGGAGTTCATTCCCAATCTA
1 GGCATACGAAGTTCATTCCCAATCTA
*
16924537 GGCATACGAAGTTCATTCCCAGTCTA
1 GGCATACGAAGTTCATTCCCAATCTA
16924563 AGATCGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GGCATACGAAGTTCATTCCCAATCTA
Found at i:16927642 original size:26 final size:26
Alignment explanation
Indices: 16927606--16927658 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16927596 GTTGACTTAG
16927606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16927632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16927658 G
1 G
16927659 GTCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16928525 original size:471 final size:470
Alignment explanation
Indices: 16927643--16928587 Score: 1484
Period size: 471 Copynumber: 2.0 Consensus size: 470
16927633 CATACGGAGT
* ** *
16927643 TCATTCCCAGTCTAAGGTCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGT
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCAGGGCTTGGGCATGT
* *
16927708 GCTGATGCCGTATTTTTCTTTGTCGAGACACCATCGTCGGAGAACCTGACCAACGGCATTGGGGT
66 ACTGATGCCGTATTTTTCTTCGTCGAGACACCATCGTCGGAGAACCTGACCAACGGCATTGGGGT
* *
16927773 TCCGACGATCGTGGGGGGTCGGGGGGTGTGCGCACATGATGTACAATGGGTGCTGGTACTTGGCC
131 TCCGACGATCGTGGGGGCTCGGGGGGTATGCGCACATGATGTACAATGGGTGCTGGTACTTGGCC
*
16927838 GTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
16927903 ATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGT
*
16927968 CACAAAATCTTGTACACTTCAAATTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAG
326 CACAAAATCTTGTACACTTCAAACTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAG
*
16928033 GATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAATCTCGAACCGT
391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAATCTCGAACCGT
16928098 AAAAAGTTTCAAAAA
456 AAAAAGTTTCAAAAA
* *
16928113 TCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCAGGGCTTGGGCATGT
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCAGGGCTTGGGCATGT
* * * *
16928178 ACTGGA-GCCGTATTTTTCTTCGTCGGGACGCCATCGTTGGAGAACCTGACCGACGGCATTGGGG
66 ACT-GATGCCGTATTTTTCTTCGTCGAGACACCATCGTCGGAGAACCTGACCAACGGCATTGGGG
* * * *
16928242 TTTCGGCGATCG-GGGAAGGCTGGGGGGGTATGCGCACATGATGTACGATGGGTGCTGGTACTTG
130 TTCCGACGATCGTGGG--GGCTCGGGGGGTATGCGCACATGATGTACAATGGGTGCTGGTACTTG
* * * *
16928306 GCCCTTATATTGGCCTCCTATCCTTCATCAAACC-CAGAGAACTTAGACCCCCTTAAAGAGCATT
193 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATT
16928370 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAA
257 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAA
** *
16928435 TGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAAT
322 TGGTCACAAAATCTTGTACACTTCAAACTTTTAGCTGAAGT-TTTTTGTGCATGCCAACAAAAAT
* * * * *
16928499 ACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTGCTTCTGAAAAAGTTTTAAAAAATCTCGA
386 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAATCTCGA
**
16928564 ACCGTAAAAAGTTTTGAAAA
451 ACCGTAAAAAGTTTCAAAAA
16928584 TCAT
1 TCAT
16928588 GAAAAATAGA
Statistics
Matches: 433, Mismatches: 37, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
469 3 0.01
470 126 0.29
471 304 0.70
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (470 bp):
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCAGGGCTTGGGCATGT
ACTGATGCCGTATTTTTCTTCGTCGAGACACCATCGTCGGAGAACCTGACCAACGGCATTGGGGT
TCCGACGATCGTGGGGGCTCGGGGGGTATGCGCACATGATGTACAATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCAAACTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAATCTCGAACCGT
AAAAAGTTTCAAAAA
Found at i:16929866 original size:26 final size:26
Alignment explanation
Indices: 16929827--16929879 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16929817 GTTGGCTTAG
*
16929827 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
16929853 GCATACTGATTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16929879 G
1 G
16929880 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16930399 original size:26 final size:26
Alignment explanation
Indices: 16930362--16930414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16930352 GTTGACTTAG
*
16930362 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
* *
16930388 GCATACGGAGTTCATTTCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
16930414 G
1 G
16930415 ATTGACCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:16930601 original size:535 final size:534
Alignment explanation
Indices: 16929588--16930659 Score: 1536
Period size: 535 Copynumber: 2.0 Consensus size: 534
16929578 CCACCCTATC
* * *
16929588 GATCCACAGCTTGTGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCTTTT
1 GATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCTGCTCGTTT
* ** *
16929653 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTG
66 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCG
**
16929718 ATAGTAGGATCGATACCGTGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTC
131 ATAGTAGGATCGATACCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTC
* * * *
16929783 TGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCTG
196 TGGCCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
* * * *
16929848 TCTAAGCATACTGATTTCATTCGCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATG
261 TCTAAGCATACGGAGTTCATTCGCACTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
** * **
16929913 TTGGGCTGGGGCATGTGCTTGTGCCGTATTTTTCTTCATCGGGACACCATCGCCGGAGAACCTGA
326 TTGGGCTCAGGAATGTGCTTGTGCCACATTTTTCTTCATCGGGACACCATCGCCGGAGAACCTGA
* * * *
16929978 CCGACGACATTGGGGTTCCTGTGATCGGAGGGGTCGGAGGGGTGTGCACACACGATGTGCGACGG
391 CCGACGACATTCGGGTTCCTGCGATCGGAGCGGCCGGAGGGGTGTGCACACACGATGTGCGACGG
16930043 ATGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
456 ATGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
16930108 TAAAGAACATTTGA
521 TAAAGAACATTTGA
* *
16930122 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCTCGCCCGCCC-CGCTCGCTCGT
1 GATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGC-CT-GCTCGT
16930186 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA-CTAGACCGAGGGTT
64 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-AGACCGAGGGTT
* * * *
16930250 GCGGTAGTAGGATTGGTAGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGCGCATCCCGTC
128 GCGATAGTAGGATCGATACCACGCAGAGGGGGACCCGAT-CGATCCCCGGCTTGCGCATCCCG-C
*
16930314 C-CTCTGGCC-GACTGAGCACCCACACGCTCATTTTGTGGGTTGACTTAGGCATAC-GAAGTTCA
191 CTCTCTGGCCAG-CTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCA
* *
16930376 TTCCCAGTCTAAGCATACGGAGTTCATTTC-CACTCTAAGAT-TGACCGGACCGAGGGTTGCGGC
254 TTCCCAGTCTAAGCATACGGAGTTCA-TTCGCACTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* *
16930439 AGCACATGTTGGGCTCAGGAATGTGC-TGCTGCCACATTTTTCTTCGTCGGGACACCATCGCTGG
318 AGCACATGTTGGGCTCAGGAATGTGCTTG-TGCCACATTTTTCTTCATCGGGACACCATCGCCGG
* * * * *
16930503 AGAACCTGATCGGCGACATTCGGGTT-CTGACGATCAGG-GCGGCCGAGGGGGGTGTGCGCACAT
382 AGAACCTGACCGACGACATTCGGGTTCCTG-CGATC-GGAGCGGCCG-GAGGGGTGTGCACACAC
* * *
16930566 GATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAA
444 GATGTGCGACGGATGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAA
* *
16930631 CTCACACCCCCTTAAGGAGCATTTGA
509 CTCACACCCCCTTAAAGAACATTTGA
16930657 GAT
1 GAT
16930660 TTTACAGGTT
Statistics
Matches: 479, Mismatches: 47, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
533 6 0.01
534 160 0.33
535 308 0.64
536 5 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (534 bp):
GATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCTGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCG
ATAGTAGGATCGATACCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTC
TGGCCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCGCACTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
TTGGGCTCAGGAATGTGCTTGTGCCACATTTTTCTTCATCGGGACACCATCGCCGGAGAACCTGA
CCGACGACATTCGGGTTCCTGCGATCGGAGCGGCCGGAGGGGTGTGCACACACGATGTGCGACGG
ATGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAACATTTGA
Found at i:16933193 original size:885 final size:886
Alignment explanation
Indices: 16931284--16934785 Score: 4748
Period size: 885 Copynumber: 3.9 Consensus size: 886
16931274 GAGGTGCCTT
* ** * *
16931284 ATTTTTCTTCGCCGGGACACTATCACCGGAGAACCTAATCGACGGCATTGGGGTTCCGACGATCG
1 ATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
16931349 GGGGGGCCGGGGGGGTGTGCGCACATGATTTACGATGGGTGCTGGAACTTGGCCCATATATTGGC
66 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
16931414 TCCCTATCCCTCATCAAACCAT-GAGAACTCACACCCTCTTAAAGAGCATTAGAGATTTTACAGG
131 CCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16931478 TTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACATTTTTTTCAAATGGTCATAAAATC
195 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
16931542 TTGTACACTTCCAGTTTTTAACAGAATTTTTTTTTGCATGCCAACAAAAATACAAGTATCATGTC
259 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
16931607 TACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAATTCCCGAACCGTAAAAA-TTT
324 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
16931671 CAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAACGCTTAAGGGA
389 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
*
16931736 CCATTGTACGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
454 CCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
* *
16931801 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTTGCCGGCGTAGTGCCC
519 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----
* * * *
16931866 GCCCGCCCTCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCAAGG
580 ----G-CCT---GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
16931931 CTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGTACCGCACAAAGGGGGACCCGACC
637 CTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * * *
16931996 AATCCCCGGCTTGCGTATCCCGCCTCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTAGGTT
702 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * * * *
16932061 GACTTAGGCAGACGGAGTTCATTCCCTGTCTAAGCATGCTGATTTCATTCCCAGTCTAAAATCGG
767 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
16932126 ATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
832 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * **
16932181 ATTTTTCTTCGTCGGGACACCATCGCCTGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCG
1 ATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
*
16932246 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGC
66 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16932311 CCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGT
131 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
16932376 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTT
196 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16932441 GTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTA
261 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * * * *
16932506 ACAAGTTTGGGGTAAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTCA
326 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* *
16932571 AAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
391 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
*
16932636 ATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
456 ATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* *
16932701 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCTGGCGTAGTGCCTGC
521 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGC
* * ** ** *
16932766 CCGCCCACTCGTTTCATCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCG
586 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
16932831 GACTGGGGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGATCCCTGACTTGC
651 GACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * *
16932896 GCAT-CTGCCCCTCTGGTCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATTCG
716 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * ** *
16932960 AAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAATCAGACCGAGGGT
781 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * **
16933025 TGCGATAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCAT
846 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * ** * *
16933066 ATTTTTCCTCGCCAGGACACCATCGTCAAAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG
1 ATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * * ** * *
16933131 GGGGGGCCAGGGGGGTGTGCGCAAATGATGTGTGATGGGTGCTAGCGCTTGGCCCATATATTGGA
66 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16933196 CCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
131 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
16933261 TTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
196 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** *
16933326 GTACACTTTTAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
261 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
16933391 CCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
326 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
16933456 AAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACC
391 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * * *
16933521 ATTGTTTGAATTTACAAGCCAGAAAAATGGCATTGGCACGACAAAAATATGAAGATGTGCCTAAA
456 ATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
*
16933586 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--TGC
521 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGC
* * * *
16933647 CCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCA
586 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
16933712 GA-TAGAGGGATGA-GGCAACAGGATCTGCAGCATGTAGAGGGGGACTCGACCGATCCCCGGCTT
651 GACT-GAGGG-TTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT
* **
16933775 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCAATTCGTGGGTTGACTTAGGCATA
714 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
16933840 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAATCAGACCGAGG
779 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
*
16933905 GTTGC-AGCAGCACATGCTGGGCTCGGGCACGTGCTGGTGCCGC
844 GTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
16933948 ATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACTGACGGTATTGGGGTTCCGACGATC-
1 ATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
16934012 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGTGTTGGCACTTGGCCCTTATATTAGC
66 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16934077 CCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
131 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
16934142 TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTT
196 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
16934207 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAT-CCAACAAAAATACAAGGATCACGTCT
261 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGATCACGTCT
** * *
16934271 AGTAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTGAAAAAAATCCCGAACCGTAAAAAGTTT
325 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTT
** * * * * *
16934336 TGAAAATCATGCAAAATAGGAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGA
389 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
*
16934401 CCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
454 CCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
* * * * * * * *
16934466 AACCCACCTACCAACCTATCGATCCTCGACTTACGCATCCCACCTTTCTGGCCGGCGTAATGCCC
519 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCT
16934531 GCCCGCTAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
584 G-CC-C--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** ** ** ** * *
16934596 AGATCAAACCAAGGGTTGTGGCAGCAGGATCAACAGCACAG-AGATGGGGACCCGACCGATCCTC
645 AGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCAC-GCAGAGGGGGACCCGACCGATCCCC
* ** * * *
16934660 -AGCTTGCGCATCCCGCCCTTCTGGCCAACTGAGAGCCCACACGCTCGTTTCATGGGTTGACTTA
709 GA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * **
16934724 GGCATACGGAGTTCATTCCAAGTCTAAGCAGAAGGAGTTCATTTTCAGTCTAAGATCGGACC
773 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
16934786 GGACTAAGGG
Statistics
Matches: 2310, Mismatches: 274, Indels: 49
0.88 0.10 0.02
Matches are distributed among these distances:
880 1 0.00
881 381 0.16
882 398 0.17
883 1 0.00
884 1 0.00
885 670 0.29
886 112 0.05
887 2 0.00
888 1 0.00
889 4 0.00
890 207 0.09
891 1 0.00
896 1 0.00
897 343 0.15
898 187 0.08
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
ATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
GACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
Found at i:16933871 original size:26 final size:26
Alignment explanation
Indices: 16933835--16933887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933825 GTTGACTTAG
*
16933835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16933861 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16933887 G
1 G
16933888 ATTGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16935465 original size:702 final size:703
Alignment explanation
Indices: 16934110--16935479 Score: 2101
Period size: 702 Copynumber: 2.0 Consensus size: 703
16934100 AGAACTCACA
* *
16934110 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
1 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
*
16934175 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
66 GGAACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
16934240 GCAATCCAACAAAAATACAAGGATCACGTCTAGTAAGTTTGGGGCCAAAACTCATTCTGAAAAAA
131 GCAAGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGAGGCCAAAACTCATTCTGAAAAAA
* * *
16934305 TTTGAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGCAAAATAGGAAACGAGTCATCTT
196 TTTGAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCATCTT
*
16934370 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
261 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCAAAAAAATGGCA
* *
16934435 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCTCGACTTAC
326 TTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCACGACTTAC
* * *
16934500 GCATCCCACCTTTCTGGCCGGCGTAATGCCCGCCCGCTAGCCCGCTCGTTTCGTCGGTTGGCTTA
391 GCATCCCACCTTTCTGGCCGACGTAATGCCCGCCCCCCAGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
16934565 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGTGGCAGCAGGATCAAC
456 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCAAC
* * *
16934630 AGCACAGAGATGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCTTCTGGCCAACTGAGAG
521 AGCACAAAGATGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCAACTGAAAG
*
16934695 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCAGAAGGA
586 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAACAGAAGGA
**
16934760 GTTCATTTTCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGCAGCAAATGCC
651 GTTCATTACCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGCAGCAAATGCC
*
16934813 CCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
1 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
* *
16934878 GGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
66 GGAACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16934943 GCAAGCCAACAAACATACAAGGATCACATCTAACAAGTTTGAGGCCAAAACTCTTTCTGAAAAAA
131 GCAAGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGAGGCCAAAACTCATTCTGAAAAAA
* * * *
16935008 TTT-TAAAAAATCCCGAACGGTAAAAAGTTTTGAAAATCATGAAAAATATAAAATGAATCATCTT
196 TTTGAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCATCTT
* *
16935072 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAGAAAAATGGCA
261 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCAAAAAAATGGCA
* *
16935137 TTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
326 TTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCACGACTTAC
* * *
16935202 GCATCCC-GCTTCTCTGGCCGACGTAGTGCGCGCCCACCCA-CCCGCTCGTTTCGTCGGTTGGCT
391 GCATCCCACCTT-TCTGGCCGACGTAATGCCCGCCC-CCCAGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
16935265 TAAGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCG
454 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATC-
* *
16935330 AA-AGCACGTAAAG-T-GGGACCCGACCGATCC-CTGACTTGCGCATCCCGCCCCTCTGGCCAGC
518 AACAGCAC--AAAGATGGGGACCCGACCGATCCTCAG-CTTGCGCATCCCGCCCCTCTGGCCAAC
* ** * * *
16935391 TGAAAGCCCGCACGCTCGTTTTGTGGGTTGCCTTAGGTATAGGGAGTTCATTCCCAAG-CTAAAC
580 TGAAAGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAAGTCTAAAC
*
16935455 -GTATGGAGTTCATTACCAGTCTAAG
644 AG-AAGGAGTTCATTACCAGTCTAAG
16935480 TTCAGACCAG
Statistics
Matches: 603, Mismatches: 56, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
701 6 0.01
702 399 0.66
703 195 0.32
704 3 0.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (703 bp):
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
GGAACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCAAGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGAGGCCAAAACTCATTCTGAAAAAA
TTTGAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCATCTT
GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCAAAAAAATGGCA
TTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCACGACTTAC
GCATCCCACCTTTCTGGCCGACGTAATGCCCGCCCCCCAGCCCGCTCGTTTCGTCGGTTGGCTTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCAAC
AGCACAAAGATGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCAACTGAAAG
CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAACAGAAGGA
GTTCATTACCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGCAGCAAATGCC
Found at i:16935671 original size:173 final size:173
Alignment explanation
Indices: 16935344--16935682 Score: 412
Period size: 173 Copynumber: 2.0 Consensus size: 173
16935334 CACGTAAAGT
** * *
16935344 GGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAAAGCCCGCACGCTCG
1 GGGACCCGACCGATCCCCAACTTGCGCACCCCACCCCTCTGGCCAGCTGAAAGCCCGCACGCTCG
* * ** * * * *
16935409 TTTTGTGGGTTGCCTTAGGTATAGGGAGTTCATTCCCAAGCTAAACGTATGGAGTTCATTACCAG
66 TTTCGTAGGTTAACTTAGGCATAGAGAGTTCATTCCCAAGCTAAACATACGGAGTTCATTACCAG
*
16935474 TCTAAGTTCAGACCAGACCGAGGGTT-ACGGCAGCACGCAGAGG
131 TCTAAGATCAGACCAGACCGAGGGTTGA-GGCAGCACGCAGAGG
* * * * **
16935517 GGGATCCGGCCGATCCCCAACTTGTGCACCCCACCCCTCTGGCCAGTTGAGCGCCCGCACGCTCG
1 GGGACCCGACCGATCCCCAACTTGCGCACCCCACCCCTCTGGCCAGCTGAAAGCCCGCACGCTCG
* * *
16935582 TTTCGTAGGTTAACTTAGGCATATAGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCA
66 TTTCGTAGGTTAACTTAGGCATAGAGAGTTCATTCCCAAG-CTAAACATACGGAGTTCATTACCA
* * * *
16935646 GTCTAAGATCTGATCGGATCGAGGGTTGAGGCAGCAC
130 GTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCAC
16935683 ATGCTGGGCT
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
172 2 0.01
173 135 0.98
174 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (173 bp):
GGGACCCGACCGATCCCCAACTTGCGCACCCCACCCCTCTGGCCAGCTGAAAGCCCGCACGCTCG
TTTCGTAGGTTAACTTAGGCATAGAGAGTTCATTCCCAAGCTAAACATACGGAGTTCATTACCAG
TCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACGCAGAGG
Found at i:16936515 original size:26 final size:26
Alignment explanation
Indices: 16936485--16936535 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936475 GTTGACTTAG
16936485 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16936511 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16936536 GGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16937150 original size:891 final size:888
Alignment explanation
Indices: 16935501--16945209 Score: 11927
Period size: 891 Copynumber: 11.0 Consensus size: 888
16935491 CCGAGGGTTA
* * * * * * *
16935501 CGGCAGCACGCAGAGGGGGATCCGGCCGATCCCCAACTTGTGCACCCCACCCCTCTGGCCAGTTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16935566 AGCGCCCGCACGCTCGTTTCGTAGGTTAACTTAGGCATA-TAGAGTTCATTCCCAGTCTAAGCAT
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCAT
* * * * *
16935630 ACGGAGTTCATTCCCAGTCTAAGATCTGATCGGATCGAGGGTTGA-GGCAGCACATGCTGGGCTC
130 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGGCAGCACATGCTGGGCTC
* * * * * * * * *
16935694 AGGAATGTGCTGGTGCCACATTTTTCTTCGCCAGGACACCATCGCCAGAGAACCTGACCGGCAGA
194 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGC
* * * *
16935759 ATTGGGGTTCCGACGATCGA-GAGG-C-GGGGGTGTGTGCACATGATGTGCGGTGGGTGCTGGTA
259 ATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
16935821 C-TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCTCTTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16935885 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* *
16935950 AAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * **
16936015 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTAAAAAAAATC-C
519 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
* * * * *
16936079 TAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCTTGAAATTTCA
584 -GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16936144 CATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAA
648 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
* * **
16936209 ATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCAACCTCTC
713 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * *
16936274 TGGCCGGCGTAGTTCCCGTTCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGAAGTTC
778 TGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
16936339 ATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGAT
842 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * *
16936386 CGGCAGCACGCAAAGGGGGATCTGGCTGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16936451 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * * *
16936516 CAGAGTTCATTCCCAGTCTAGGATCGGACCAGACCGAGGGTTGCGGTAGCACGTGCTGGGCTCGG
131 CAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * ** * *
16936581 GCATGTCCTGGTGCCGTATTTTTCTTCGCCACGACACCATCGTCGAAGAACCTGACCGGCGGCAT
196 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCAT
* * * *
16936646 CGGGGTTCCGGCGATCGATAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGAGCTAGTA
261 TGGGGTTCCGGCGATCG--AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * **
16936711 CTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCATACCCTATTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16936776 ATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGATACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
16936841 AAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
16936906 ATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAGTCCTTCTGAAAAAAATTTTAAAAAATCT
519 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCT
*
16936971 CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
583 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16937036 CATGAAGGATTAAGGGATCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
648 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
* * *
16937101 ATATGAAGATGTGCCTAAACCCACCTACGACCCT-TCGATCCATGGCTTGCACATCCCGCCTCTC
713 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * *
16937165 TGGCCGACGTAGTGCCTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
778 TGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * *
16937230 ATTCCCAAG-CTAAGATC-GAACTAGACTGAGGGTTGTGGGAGAAGGAT
842 ATTCCC-AGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
16937277 CGACAGCACGTAGAGGGGGACCCGACAGATCCCCGACTTACGAATCCCGCCACTCTGGCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
16937342 AGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCAT
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCAT
* * * *
16937406 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCAC-GCAGCAAATGCTGGGCTCG
130 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * *
16937470 AGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGACACCATCGTCGGAGAACCTGACCGACAGCA
195 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCA
* * * * * *
16937535 TTGGGGTTCCGACAATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGGGTCCTGGTA
260 TTGGGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
16937600 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16937664 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGTGACACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* *
16937729 AAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
16937794 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-C
519 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
* ** * *
16937858 TGAGCCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
584 -GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
16937923 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
648 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
* *
16937988 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCATCCGGCCTCTC
713 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * * * *
16938053 GGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCTTTTCATCGGTTGGCTTGGGCATGCGGGGTTC
778 TGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
16938118 ATTCCCAGTCTAAGATC-GGCTGGGACTGAGGGTTGCGGTAGCAAGAT
842 ATTCCCAGTCTAAGATCAGAC-CGGACTGAGGGTTGCGGCAGCAGGAT
* * ** * *
16938165 CGACAGCACGCAGAGGGGGATCCGATCGA-CCCTCGACTTACGCATCCCACCCCTCTGGCCGGCT
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16938229 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
* * * * *
16938294 ACACAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACGTGCTGGGCTCG
130 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* ** ** * *
16938359 GGCATGTCCTGGTGCCTTATTTTTC-TCTGCCATGACACCATCGCCGAAGAACCTGACCGACGGC
195 GGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGACACCATCGTCGGAGAACCTGACCGACGGC
* ** * *
16938423 ATTGGGGTTCTGATGATCGGCGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
259 ATTGGGGTTCCGGCGATC-GAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
16938488 ACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCTCCTTAAAGAC
323 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16938553 CATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTTT
388 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
*
16938618 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
453 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAA
* * **
16938683 AAATACAAGGATCACGTCTACCAAGATTGGGGCTAAAAAGCCTT-TCGAAAAAATTTTAAAAAAT
517 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAAT
*
16938747 ACT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
581 -CTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
16938811 TCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGCCATGGCA
645 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCA
*
16938876 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCT
710 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * * * * *
16938941 CTCTGGCCGACGTAGTGCTCGCCTGCACGCCCGCTCTTTTCGTCGGATGGCTTAGGCATTCGAAG
775 CTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
16939006 TTCATTCCCTGTCTAAGATCGGACCGGA-TCGAGGGTTACGGCAGCAGGAT
839 TTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGAT
* * * ** * * *
16939056 TGGCAGCATGCAGAGGGGGACCTGATCGATCCCC-AGCTTGCGTATCCTGCCCCTCTGGCTGGCT
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16939120 GAGCGCCCCCACGCTCGTTTCGTTGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAG-A
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCA
* *
16939183 T-C-G-G---------A--C-----T---A-C--ACCGAGGGTTATGGCAGCACATTCTGGGCTC
129 TACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* * * ** * * *
16939223 GAGCATGTGCT-GTGCTGCATTTTTCTTCACCGGGACACCATCACCGGAGAACCTGATCGGCGAC
194 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGC
* * * * *
16939287 ATTGCGGTTCCGACGATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
259 ATTGGGGTTCCGGCGATCGAGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
16939352 TACTCGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGA
322 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16939417 GCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTT
387 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
*
16939482 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAA
452 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** *
16939547 AAATACAAGGATCACGTATAAAAAGTTTGGGGCCAAAA-TGCCTTCTGAAAAAAGTTTAAAAAAT
517 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAAAAT
* * * *
16939611 CTCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCTTGAAACTT
581 CTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
16939676 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGTGTGGCAG
646 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAG
* *
16939741 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGCCTC
711 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * *
16939806 TCTGGCAGGCATAGTGCCCGCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
776 TCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
16939871 CATTCCCAGTCTAAGATCAGACCAGACAGAAGGTTGCTGTAGCAGGAT
841 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * *
16939919 CGGCAGCCCACAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGTCCCTCTGGCTGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
16939984 AACGCCAGCACGCTAGTTTCATTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAGGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * * *
16940049 C-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCACATGCTGGGCT-G
131 CAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * *
16940112 GGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGACACCATCGTCGTAGAACCTGACCGACGGCA
195 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCA
* *
16940177 TTGAGGCTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
260 TTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
16940241 TTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCA
325 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
16940306 TTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
390 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* * *
16940371 AATGGTCACAAAATCTTGTACACTTCGAGTTTGTGGCTGAATTTTTTTGTGCATACCAACAAAAA
455 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
16940436 TACAAGGATCATGTCGACCAAGTTTGGAGCCCAAACTCCTTCTGAAAAAATTTTAAAAAGTCTCA
520 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
* * * * ** *
16940501 AATCTTAAAAAGTTTCAAAAATCGTGAAAATTAGAAAATAAGTCGTCTTGTCATGAAACTTCACA
585 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
** *
16940566 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGATATGGGAGAAAT
650 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAAT
* *
16940631 ATGAAGATGTGCCTAAACCCACCTACCATCATATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
715 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
** * * * **
16940696 AACGACATAGTGCTCGCCGTCTAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
780 GCCGGCGTAGTGCCCGCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
16940761 TCCCAGTCTAAGATAAGACTGGACCGAGGGTTGCTGCAGCAGGAT
844 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * *
16940806 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCCCGGCCTTTTGGCCGGTT
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
16940870 GAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCAT
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
* * * * * *
16940935 AC-GCAGTTCATTCCTAGT-TGAAGATCAGACCAGACCAAGGGTTCCAGCAGCACATGATGGGCT
130 ACAG-AGTTCATTCCCAGTCT-AAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * * * * **
16940998 CGAGAATGTGCTGGTGCCGGATTTTTCTTCGTCGGGACACCATCATCGGAGAACCTGACCGGTGG
193 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGG
* * * * * * *
16941063 CCTTGAGGTTTCGGTGATCGAGGAGGGCCGGGGGGGGGGTGTGCGCACATGATGTACAATGGGTA
258 CATTGGGGTTCCGGCGATCGAGG-GGGCC----GGGGGGTGTGCGCACATGATGTGCGATGGGTG
** * *
16941128 CTGGTACTTGGCCCTTATATTGGCCCAATATACCTCATCAAACCTCGAGAACTCACACCCTCTTA
318 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
16941193 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACATT
383 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* *
16941258 TTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGCT-CTTGCC
448 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCC
*
16941322 AA-AAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAA
512 AACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* ** ** * *
16941386 AAAATCTCAAACCGTAAAAAGTTTCGAAAATCACGAAAAATAGAAAACGAGTCGTGTTGCCGTGA
576 AAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
16941451 AACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
641 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCAT
* * ** * *
16941516 GGTAGAAATATAAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCACATCCC
706 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
16941581 GCCTCTCTGGCCGGCGTAGAGCCCGTCTGCCCACCCGCTC-TTTCGTCGGTTGGCTTAGGCATAC
771 GCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
16941645 GGAGTTCATTCCTAGTCTAAGATCAGACCGGA-TAGAGGGTTACGGTAGCAGGAT
835 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGAT
* * * * * * * **
16941699 CGGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGTGCCTCCCAACCCTCTGGCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16941764 AGTGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * * * *
16941829 CAGAGTTCATTACCAGT-TGAAGATCGAACCAGATCGAGGGTTACGGTAGCACTTGCTGGGCTCG
131 CAGAGTTCATTCCCAGTCT-AAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * * * **
16941893 AGCATGTGCTGGTGCCGTATTTTTCTTCTCCAGGACACCATCATCGGAGAACCTTACCGGTGGCA
195 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCA
* * *
16941958 TTAGGGTTCCGGTGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
260 TTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
16942022 TTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCA
325 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
16942087 TTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATAAAAGTGTCTGAAATGTGGACACTTTTTTCA
390 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* *
16942152 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAT
455 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
16942217 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCG
520 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
16942282 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
585 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
16942347 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTACAAAT
650 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAAT
* * *
16942412 ATGAAGATGTGCCTAAACCCAGCTACCACCCTATCAATCCACGGCTTACGCATCCCGCCTCTCTG
715 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* *
16942477 GCCGGC--A-T-----CCGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
780 GCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** ** * * * ** *
16942533 CCCAGTCTAAAATTGGATAGAACCGAGGGTTACGATAGTAGGAT
845 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * * **
16942577 CGACAGCACGTAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCTCGCCCCTCTTCCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
16942642 AGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCAAAC-AGAGTTCATTCCCAGTCTAAGCAT
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCAT
* * ** * * * * * * * *
16942706 ACGGACTTCATTCCCAACCTAAG-T--GA--TGGCCGAAGGTTGCGCCAGCATATCCT-GGCTTG
130 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * **
16942765 GG-ATGTGCTCGGT-CCGCA-TTTT-TTCG-C-AGACACCATCGACTGGAGAA-CT-ACTCGAAA
195 GGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGGGACACCATCGTC-GGAGAACCTGAC-CGACG
* * * ** * *
16942822 GCATTGGCCAACGATCGGGAAAT-GAGCGGGG--GGGGGCTGT-CGGCCCATGA-GTGCGAT-GG
257 GCATTGG----GGTTCCGGCGATCGAG-GGGGCCGGGGGGTGTGC-GCACATGATGTGCGATGGG
* ** *** ** * *
16942881 TAAGCGTGG-A-TGATAG-CCTGTA-GGTGG--GTTTAGGCATCATTTCATAACCTCCAGAA-TG
316 T--GC-TGGTACT--TGGCCCT-TATATTGGCCCCCTATCCCTCA--TCA-AACCTCGAGAACT-
** *** * * *
16942939 C-CA---TTTTTCTG-GC-TTT-AAATTCTACATGG--T-C--CC-TTAAGCCATT-AAGT-TC-
371 CACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGT-AGCCATTAAAGTGTCT
* *
16942988 --GATGGGGA-AC-TTTTTC-AATGGTCAC-AAAT-TTGTACACTTCGATTTTTTAGCTGAATTT
434 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * **
16943046 TTTCAAGTGC-TGCC--CCAAAATACAAGGATC-TGTCTACC-AGTTT--GG-C-TGA-TCCTTC
499 TTT--TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
16943101 TAAAAAAATTTTAAAAAATCTCGAACCGTAACAAAGTTTTAAAAATCGTG--AAATAGAAAACGA
562 TGAAAAAATTTTAAAAAATCTCGAACCGTAA-AAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * *
16943164 GTCATCTTGCCGTGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTAGAA
626 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA
* * * * *
16943229 AAATGGCATTGTCACGACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCA
691 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
16943294 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT-------GCCCGCCCACTCGTTTCGTCGGT
756 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGT
* *
16943352 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACTGAGGGTTGCAGCAGCA
821 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCA
16943416 GGAT
885 GGAT
* * * ** * * * * *
16943420 CGGCTGTACACAGATGGGGG-CCCGATCGATCCCCGGCTTGCGCCTCCCGCCCCTCTAGCTGGCC
1 CGGCAGCACGCAGA-GGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16943484 GAGTGTCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
** * * * * * * *
16943549 ATGGAGTTCATTCCTAGTCTAATATCGAACCAAACCGAAGGTTACGACAGCACATGCTAGGCTCG
130 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * *** *
16943614 GGCATGTGATGGTGTCGCATTTTTCTTCACCGGGACACCATTACCGGAGAACCTGATCGACGGCA
195 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCA
* * ** *
16943679 TTGGGGTTTCGGCGATCG-GGGAGGCCAGGTAGTGTGCGTACATGATGTGCGATGGGTGCTGGTA
260 TTGGGGTTCCGGCGATCGAGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
**
16943743 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGGCCCCCTTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16943808 ACTTGAGATTTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
**
16943873 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCATGCATGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * *
16943938 ATACAAGGATCACATCTACCATGTTTGGGGTCAAAAATCGTTCTAAAAAAATTTTTAAAAATC-C
519 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
* * * *
16944002 TGAACCGTAAAAAGTTTTGAATATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
584 -GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16944067 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGTATTGGCATGGTAGAA
648 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
* * * *
16944132 ATATGAAGATATGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGCCTCTC
713 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
*
16944197 TAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
778 TGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * *
16944262 ATTCCCAGTCTAAGATCAGACTAGA-TCGAGAGTTACGCCAGCAGGAT
842 ATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGAT
** * * * ** * * * *
16944309 CGGCAGCGTGCAGAGGGGGACACGACCGATCCCTGGGTTGCGTAACCTGCCCTTCTGGCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
16944374 AGCACCCGTACTCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCACTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * * * * *
16944439 CAGAGTTCATTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGA
131 CAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * ** *
16944504 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCACCGGAGAACCTGACCGACGGTAT
196 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCAT
* *
16944569 TGGGGTTCCAGCGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTA
261 TGGGGTTCCGGCGATCGA-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
** * *
16944634 CTTGGCCCTTATATTGGCCCGATATCCCTCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
16944699 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAACTGTTTGAAATGGGGACATTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
16944764 AAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
16944829 ATACAATGATCAAGTCTACCATGTTTGGGTCCAAAACTCCTT-TCGAAAAAATTTAAAAAAATCT
519 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCT
* * *
16944893 TGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
583 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *** *
16944958 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCACAAAA
648 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAA
* *
16945023 ATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTC
713 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
** * * * *
16945088 TGGCCGATGTAGTGCCCGCCCACCCGCCCGCTCGTTTCCTCGATTGGCTTAGGCATACAGAGTTC
778 TGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** *
16945153 ATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGAT
842 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
*
16945200 CGGTAGCACG
1 CGGCAGCACG
16945210 TAAAAGGGGA
Statistics
Matches: 7628, Mismatches: 988, Indels: 410
0.85 0.11 0.05
Matches are distributed among these distances:
841 160 0.02
842 40 0.01
843 209 0.03
844 8 0.00
845 2 0.00
846 1 0.00
847 5 0.00
848 28 0.00
849 26 0.00
850 50 0.01
851 30 0.00
852 40 0.01
853 22 0.00
854 32 0.00
855 10 0.00
856 2 0.00
857 4 0.00
858 10 0.00
859 6 0.00
860 9 0.00
862 8 0.00
863 195 0.03
864 326 0.04
865 260 0.03
866 3 0.00
867 32 0.00
868 18 0.00
869 18 0.00
870 47 0.01
871 49 0.01
872 40 0.01
873 32 0.00
874 6 0.00
875 5 0.00
876 2 0.00
877 8 0.00
878 202 0.03
879 18 0.00
880 33 0.00
881 161 0.02
883 1 0.00
885 237 0.03
886 467 0.06
887 880 0.12
888 545 0.07
889 635 0.08
890 273 0.04
891 1477 0.19
892 180 0.02
893 316 0.04
894 457 0.06
895 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
CAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
CCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
Found at i:16937412 original size:26 final size:26
Alignment explanation
Indices: 16937376--16937428 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16937366 GTTGACTTAG
16937376 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16937402 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16937428 G
1 G
16937429 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16940046 original size:26 final size:26
Alignment explanation
Indices: 16940015--16940068 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16940005 TTGGTTGACT
16940015 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
16940041 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
16940067 TA
1 TA
16940069 AGATCAGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCCAGTC
Found at i:16940508 original size:17 final size:17
Alignment explanation
Indices: 16940483--16940519 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
16940473 CCTTCTGAAA
*
16940483 AAATTTTAAAAAGTCTC
1 AAATCTTAAAAAGTCTC
*
16940500 AAATCTTAAAAAGTTTC
1 AAATCTTAAAAAGTCTC
16940517 AAA
1 AAA
16940520 AATCGTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (17 bp):
AAATCTTAAAAAGTCTC
Found at i:16942288 original size:887 final size:884
Alignment explanation
Indices: 16939155--16945209 Score: 7184
Period size: 887 Copynumber: 6.9 Consensus size: 884
16939145 GTTGACTTAG
* * * * *
16939155 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTACACCGAGGGTTATGGCAGCACATTCTGGG
1 GCATACAGAGTTCATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
16939220 CTCGAGCATGTGCT-GTGCTGCATTTTTCTTCACCGGGACACCATCACCGGAGAACCTGATCGGC
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGACACCATCACCGGAGAACCTGACCGAC
* * * *
16939284 GACATTGCGGTTCCGACGATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGC
129 GGCATTG-GGTTCCGGCGATCGGGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
16939349 TGGTACTCGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAG
191 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16939414 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
16939479 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** *
16939544 TAAAAATACAAGGATCACGTATAAAAAGTTTGGGGCCAAAA-TGCCTTCTGAAAAAAGTTTAAAA
386 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAA
* * *
16939608 AATCTCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCTTGAAA
450 AATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
16939673 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGTGTGG
515 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGG
* *
16939738 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGC
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * *
16939803 CTCTCTGGCAGGCATAGTGCCCGCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
645 CTCTCTGGCCGGCGTAGTGCCCGCCGCCCACCCGC-TCTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
16939868 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAAGGTTGCTGTAGCAGGATCGGCAGCCCACAGA
709 GTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
16939933 GGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGTCCCTCTGGCTGGCTGAACGCCAGCACGCT
774 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
16939998 AGTTTCATTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAG
839 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16940044 GCATAC-GAAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTACAGTAGCACATGCTG
1 GCATACAG-AGTTCATTCCCAGT-TAAGATCGA-ACCAGACCGAGGGTTACGGCAGCACATGCTG
* * * ** *
16940107 GGCT-GGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGACACCATCGTCGTAGAACCTGACCG
63 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGACACCATCACCGGAGAACCTGACCG
*
16940171 ACGGCATTGAGGCTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
127 ACGGCATTG-GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
16940235 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTAGAGAACTCACACCCCCTTAA
191 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16940300 AAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
16940365 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTGGCTGAATTTTTTTGTGCATACCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
16940430 CAAAAATACAAGGATCATGTCGACCAAGTTTGGAGCCCAAACTCCTTCTGAAAAAATTTTAAAAA
386 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * * ** * * ** *
16940495 GTCTCAAATCTTAAAAAGTTTCAAAAATCGTGAAAATTAGAAAATAAGTCGTCTTGTCATGAAAC
451 ATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
** *
16940560 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGATATGGG
516 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGC
* *
16940625 AGAAATATGAAGATGTGCCTAAACCCACCTACCATCATATCGATCCACGGCTTGCGCATCCCGCC
581 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
** * * * * *
16940690 TCTCTGAACGACATAGTGCTCGCCGTCTAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
646 TCTCTGGCCGGCGTAGTGCCCGCCGCCCA-CCCGCTC-TTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
16940755 GTTCATTCCCAGTCTAAGATAAGACTGGACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAGA
709 GTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
* * * * *
16940820 GGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGGCCTTTTGGCCGGTTGAGCGCCCGCACGCT
774 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
16940885 CGTTTCGTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
839 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16940931 GCATAC-GCAGTTCATTCCTAGTTGAAGATC-AGACCAGACCAAGGGTTCCAGCAGCACATGATG
1 GCATACAG-AGTTCATTCCCAGTT-AAGATCGA-ACCAGACCGAGGGTTACGGCAGCACATGCTG
* * *
16940994 GGCTCGAGAATGTGCTGGTGCCGGATTTTTCTTCGTCGGGACACCATCATCGGAGAACCTGACCG
63 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGACACCATCACCGGAGAACCTGACCG
** * * * * * *
16941059 GTGGCCTTGAGGTTTCGGTGATCGAGGAGGGCCGGGGGGGGGGTGTGCGCACATGATGTACAATG
127 ACGGCATTG-GGTTCCGGCGATCG-GGGGGGCC----GGGGGGTGTGCGCACATGATGTGCGATG
* ** * *
16941124 GGTACTGGTACTTGGCCCTTATATTGGCCCAATATACCTCATCAAACCTCGAGAACTCACACCCT
186 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
16941189 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGA
251 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
16941254 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGCT-CT
316 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCA
*
16941318 TGCCAA-AAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
380 TGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * *
16941382 TTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCACGAAAAATAGAAAACGAGTCGTGTTGCC
444 TTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16941447 GTGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
509 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTG
* * ** * *
16941512 GCATGGTAGAAATATAAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCACA
574 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
16941577 TCCCGCCTCTCTGGCCGGCGTAGAGCCCGTCTGCCCACCCGCTCTTTCGTCGGTTGGCTTAGGCA
639 TCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCACCCGCTCTTTCGTCGGTTGGCTTAGGCA
* * * *
16941642 TACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATAGAGGGTTACGGTAGCAGGATCGGTAGCA
703 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGCAGGATCGGCAGCA
* * * * ** *
16941707 CGTAGAGGGGGACCCGACCGATCCTCGGCTTGTGCCTCCCAACCCTCTGGCCGGCTGAGTGCCCG
768 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
16941772 CACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16941824 GCATACAGAGTTCATTACCAGTTGAAGATCGAACCAGATCGAGGGTTACGGTAGCACTTGCTGGG
1 GCATACAGAGTTCATTCCCAGTT-AAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * **
16941889 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCTCCAGGACACCATCATCGGAGAACCTTACCGGT
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCT-CGGGACACCATCACCGGAGAACCTGACCGAC
*
16941954 GGCATTAGGGTTCCGGTGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
129 GGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
16942018 GTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAG
193 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
16942083 ATCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATAAAAGTGTCTGAAATGTGGACACTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
16942148 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACA
323 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
16942213 AAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAAT
388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * *
16942278 CCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
453 CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16942343 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAC
518 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAG
* * *
16942408 AAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCAATCCACGGCTTACGCATCCCGCCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* *
16942473 TCTGGCCGGC--A-T--CCGCC-CGCCACTCG---TTTCGTCGGTTGGCTTAGGCATATGGAGTT
648 TCTGGCCGGCGTAGTGCCCGCCGC-CCACCCGCTCTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** ** * * ** * * *
16942529 CATTCCCAGTCTAAAATTGGATAGAACCGAGGGTTACGATAGTAGGATCGACAGCACGTAGAGGG
712 CATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * ** *
16942594 GGACCCGACCAATCCTCGGCTTACGCATCTCGCCCCTCTTCCCGGCTGAGCGCCCGCAAGCTCGT
777 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
16942659 TTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
842 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * * *
16942702 GCATACGGACTTCATTCCCAACCTAAG-T-G-A--TGGCCGAAGGTTGCGCCAGCATATCCT-GG
1 GCATACAGAGTTCATTCCC-AGTTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
16942761 CTTG-GGATGTGCTCGGT-CCGCA-TTTT-TTCGC-AGACACCATCGACTGGAGAA-CT-ACTCG
65 CTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCTCGGGACACCATC-ACCGGAGAACCTGAC-CG
** ** * * * * *
16942819 AAAGCATT-GG--CCAACGATCGGGAAATGAGCGGGGGGGGGCTGTCGGCCCATGA-GTGCGAT-
127 ACGGCATTGGGTTCCGGCGATCGGG---GGGGCCGGGGGGTG-TG-C-GCACATGATGTGCGATG
* ** *** ** * *
16942879 GGTAAGCGTGG-A-TGATAG-CCTGTA-GGTGG--GTTTAGGCATCATTTCATAACCTCCAGAA-
186 GGT--GC-TGGTACT--TGGCCCT-TATATTGGCCCCCTATCCCTCA--TCA-AACCTCGAGAAC
** *** * * *
16942937 TGC-CA---TTTTTCTG-GC-TTT-AAATTCTACATGG--T-C--CC-TTAAGCCATT-AAGT-T
242 T-CACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGT-AGCCATTAAAGTGT
*
16942987 C-G--ATGGGGA-AC-TTTTTC-AATGGTCAC-AAAT-TTGTACACTTCGATTTTTTAGCTGAAT
304 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * **
16943044 TTTTTCAAGTGC-TGCC--CCAAAATACAAGGATC-TGTCTACC-AGTTT--GG-C-TGA-TCCT
369 TTTTT--TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
16943099 TCTAAAAAAATTTTAAAAAATCTCGAACCGTAACAAAGTTTTAAAAATCGTG--AAATAGAAAAC
432 TCTGAAAAAATTTTAAAAAATCTCGAACCGTAA-AAAGTTTTGAAAATCATGAAAAATAGAAAAC
* * * *
16943162 GAGTCATCTTGCCGTGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTAG
496 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
* * * * *
16943227 AAAAATGGCATTGTCACGACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATC
561 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
16943292 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG--C-CCGCCCACTCG---TTTCGTCGG
626 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCACCCGCTCTTTCGTCGG
* * * *
16943351 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACTGAGGGTTGCAGCAGC
691 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACAGAGGGTTACGGCAGC
* * * * * *
16943415 AGGATCGGCTGTACACAGATGGGGG-CCCGATCGATCCCCGGCTTGCGCCTCCCGCCCCTCTAGC
755 AGGATCGGCAGCACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
16943479 TGGCCGAGTGTCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
819 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
16943544 A
884 A
** * * * * * *
16943545 GCATATGGAGTTCATTCCTAGTCTAATATCGAACCAAACCGAAGGTTACGACAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
16943610 CTCGGGCATGTGATGGTGTCGCATTTTTCTTCACCGGGACACCATTACCGGAGAACCTGATCGAC
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGACACCATCACCGGAGAACCTGACCGAC
* * * ** *
16943675 GGCATTGGGGTTTCGGCGATCGGGGAGGCCAGGTAGTGTGCGTACATGATGTGCGATGGGTGCTG
129 GGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
**
16943740 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGGCCCCCTTAAAG
193 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
16943805 AGCACTTGAGATTTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
**
16943870 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCATGCATGCCAACA
323 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * * *
16943935 AAAATACAAGGATCACATCTACCATGTTTGGGGTCAAAAATCGTTCTAAAAAAATTTTTAAAAAT
388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* *
16944000 C-CTGAACCGTAAAAAGTTTTGAATATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
453 CTC-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
16944064 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGTATTGGCATGGTA
517 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCA
* * * *
16944129 GAAATATGAAGATATGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGCCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* *
16944194 CTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
647 CTCTGGCCGGCGTAGTGCCCG-CCGCCCACCCGCTC-TTTCGTCGGTTGGCTTAGGCATACGGAG
** * * **
16944259 TTCATTCCCAGTCTAAGATCAGACTAGATC-GAGAGTTACGCCAGCAGGATCGGCAGCGTGCAGA
710 TTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
* * * * * * * * * *
16944323 GGGGGACACGACCGATCCCTGGGTTGCGTAACCTGCCCTTCTGGCCGGCTGAGCACCCGTACTCT
774 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
** *
16944388 CGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCACTCTAA
839 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16944434 GCATACAGAGTTCATTCCCAGTCAAAGATC-AGACCAGACTGAGGGTTGCAGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGT-TAAGATCGA-ACCAGACCGAGGGTTACGGCAGCACATGCTGG
*
16944498 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCACCGGAGAACCTGACCGA
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGACACCATCACCGGAGAACCTGACCGA
* * *
16944563 CGGTATTGGGGTTCCAGCGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTA
128 CGGCATT-GGGTTCCGGCGATCG-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
** * *
16944628 CTGGTACTTGGCCCTTATATTGGCCCGATATCCCTCATCAAACCTTGAGAACTCAGACCCCCTTA
190 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
16944693 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAACTGTTTGAAATGGGGACATT
255 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16944758 TTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCA
320 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
16944823 ACAAAAATACAATGATCAAGTCTACCATGTTTGGGTCCAAAACTCCTT-TCGAAAAAATTTAAAA
385 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAA
*
16944887 AAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
449 AAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
16944952 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACC
514 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATG
* * * *
16945017 ACAAAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
579 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * * * *
16945082 CCTCTCTGGCCGATGTAGTGCCCGCCCACCCGCCCGCTCGTTTCCTCGATTGGCTTAGGCATACA
644 CCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCACCCGCTC-TTTCGTCGGTTGGCTTAGGCATACG
* * *
16945147 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCA-AGGGTTACGGCAGCAGGATCGGTAGCACG
707 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTACGGCAGCAGGATCGGCAGCACG
16945210 TAAAAGGGGA
Statistics
Matches: 4416, Mismatches: 612, Indels: 274
0.83 0.12 0.05
Matches are distributed among these distances:
841 160 0.04
842 36 0.01
843 210 0.05
844 10 0.00
845 3 0.00
846 1 0.00
847 5 0.00
848 28 0.01
849 22 0.00
850 42 0.01
851 29 0.01
852 35 0.01
853 24 0.01
854 31 0.01
855 16 0.00
856 4 0.00
857 5 0.00
858 19 0.00
859 6 0.00
860 9 0.00
862 8 0.00
863 15 0.00
864 10 0.00
865 7 0.00
866 6 0.00
867 34 0.01
868 20 0.00
869 18 0.00
870 38 0.01
871 38 0.01
872 39 0.01
873 32 0.01
874 6 0.00
875 5 0.00
876 1 0.00
877 3 0.00
878 195 0.04
879 19 0.00
880 34 0.01
881 169 0.04
882 3 0.00
883 1 0.00
885 10 0.00
886 466 0.11
887 696 0.16
888 98 0.02
889 399 0.09
890 17 0.00
891 549 0.12
892 8 0.00
893 314 0.07
894 458 0.10
895 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATACAGAGTTCATTCCCAGTTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGACACCATCACCGGAGAACCTGACCGACGG
CATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
GGCCGGCGTAGTGCCCGCCGCCCACCCGCTCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16943555 original size:26 final size:26
Alignment explanation
Indices: 16943519--16943570 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943509 GTTGACTTAG
16943519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16943545 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16943571 TATCGAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16946632 original size:26 final size:26
Alignment explanation
Indices: 16946575--16946632 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16946565 ACTCCTTTTG
* ***
16946575 TAAAAATTTTAAAAAATCAGGAACCG
1 TAAAAATTTTAAAAAATCACGAAAAA
16946601 TAAAAATTTT-AAAAATCACGAAAAA
1 TAAAAATTTTAAAAAATCACGAAAAA
16946626 TAGAAAA
1 TA-AAAA
16946633 CGAGTCATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (26 bp):
TAAAAATTTTAAAAAATCACGAAAAA
Found at i:16947030 original size:26 final size:26
Alignment explanation
Indices: 16947001--16947051 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946991 TGACTTAGGG
16947001 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
16947027 ATACGGAGTTGATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16947052 ATCGGAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:16948796 original size:26 final size:26
Alignment explanation
Indices: 16948760--16948812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16948750 GTTAACTTAG
*
16948760 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
16948786 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
16948812 G
1 G
16948813 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:16949688 original size:26 final size:26
Alignment explanation
Indices: 16949652--16949703 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16949642 GTTGACTTAG
16949652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16949678 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16949704 TATCGAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16950122 original size:889 final size:887
Alignment explanation
Indices: 16945226--16952674 Score: 9739
Period size: 889 Copynumber: 8.4 Consensus size: 887
16945216 GGGACCTTGC
* *
16945226 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
* * * ** *
16945291 CTGCAGCACATGTTGGGCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCAT
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGT
* *
16945356 CGGAGAACCTGATCGACGGTATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGTGGTTTGCGCAC
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGT-G--TGCGCAC
* ** ***
16945419 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTCACCATATATCCCTCATCAAACCTCGA
193 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16945484 GAACTCACACCCGCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTG
258 GAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16945549 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAA
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
16945614 TGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
387 T-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * *
16945679 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACAA
451 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
16945744 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAA
516 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA
*
16945809 AAATGGGATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
581 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * ** *
16945874 CGGCTTGCACATCCTGCCTCTCTGGTCGGCGTAGTGCCCGCACGCCCTCCCACTCGTTTCACAAT
646 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTT--C-GT
* * * *
16945939 CGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCAGACCGAGGGTTGCGAC
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACTGAGGGTTGCGGC
* * * * * * * * *
16946003 AGTAGGATCGGCCGCATGCAGAAGGGGACCC-ACCCAATCCTCGACTTGCGCAGCCCGCCCCTCT
772 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * *
16946067 GGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGA
836 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
16946119 GATCATTCCCTA-TATAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTT
1 GTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* * * * ** **
16946183 ACGTCAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCG
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCG
* * * * * * * * *
16946248 CCGGAGAACCTGACCGACGACATTAGGGTTTCAGCTATTGGGGCGGGTCGGGGGGTGTGCGCACA
130 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGGCCAGGGGGTGTGCGCACA
*
16946313 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAG
194 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16946378 AACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGT
259 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
** * *
16946443 CTGAAATGAAGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAAG
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * *
16946508 TTTTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTT
387 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** * **
16946573 TGTAAAAATTTTAAAAAATCAGGAACCGTAAAAA-TTTTAAAAATCACGAAAAATAGAAAACGAG
452 TGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
16946637 TCATCTTGCCATGAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAA
517 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAA
* * * * * *
16946702 AATGGAATTGGCATTGTAGAAATATGAAGATATGCCTAAACCCACTTACCACCCTATCGATCCAT
582 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
16946767 GGCTTGTGCATCCCGTCTTTCTGGCCGACGTTGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGT
647 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGGT
* * * * * *
16946832 TGTCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCGGCAGCAA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAG
* * * *
16946897 GATTGGCAGCGCGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
777 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* *
16946962 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGGATACGGA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16947008 GTTCATTCCCAGTCTAAGTATACGGAGTTGATTCCCAGTCTAAGATCGGAA-TGGACAGAGGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTT
* * * ** *
16947072 GTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATAGGCACACCATCG
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCG
*
16947137 TCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAGAGGGGGTGTGCGCA
130 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC---AGGGGGTGTGCGCA
* * * *
16947201 CATGAAGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACTTTG
192 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
16947266 ATAACTCACACCCCCTTAAAGAGCAGTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGT
257 AGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
16947331 GTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGA
321 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
16947396 ATTTTTTTTTGCATGCCAAAAAAAATACAAGAATCAAGTCTACCAAGTTTGGGGCCAAAACTCCT
386 A-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
16947461 TCTGAAAAAATTTTATAAAATCTCGAACAGTAAAACGTTTCAAAAATCGTGAAAAATATAGAACG
450 TCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
16947526 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATA
515 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGA
** * *
16947591 AAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCC
580 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
16947656 ATGGCTTACGCATCACACCCCTCTGGCCGGCGTAGTGCCCGCGCACCCG-CT--T-GTTTCATCG
645 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCG
* * * * * *
16947717 GTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGATC-GAATTGAGGGTTACGGTAG
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACTGAGGGTTGCGGCAG
* * * ** * * *
16947781 CAGGATCTGG-AGCACGTAGAGGGGGACCTGACAGATCCTTGGCTTACGCATCCTGCACCTCTGA
774 CAGGATC-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * *
16947845 CTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
838 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16947895 GTTCATTCCCCA-TCTAAGCATGACGGAGTTCATTACCAGT-TGAAAGATCGAATCGGATCGACG
1 GTTCATT-CCCAGTCTAAGCAT-ACGGAGTTCATTCCCAGTCT--AAGATCGAACCGGACCGA-G
** * * ** *
16947958 GGTTAATGGTAGCACTTGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCTCCGGGACAC
61 GGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACAC
* ** * * *
16948023 CATCATCGGAGAACCTGACCGGTGGCATTAGGGTTCTGGTGATCGGGGGGGCC--GGGGTGTGCG
125 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCG
* ** *
16948086 CACATGATGTGTGATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCT
190 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
16948151 CGAGAACTCACACCCCTTAAAGATCATTT--GATTTTACAGGTTTGCTG-CAGTAGCCATAAAAG
255 CGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
16948213 T-TCTG-AATGTGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTG
320 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
16948275 AATTTTTTTGTGCATCCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC
385 AA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
16948340 TTCGGAAAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAA
449 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAA
*
16948404 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCA
513 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
16948469 GAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGAT
578 GAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
16948534 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC--A-T--CCG----CCCGCC-ACTCGTTTCGT
643 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGT
* * * * *
16948589 CGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA-TAGGATCA-AATCGACGGTTACGG
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCAGACT-GAGGGTTGCGG
* * ** * * * * *
16948652 TAGTAGGATCAACAGCACGTAGAGGGGGACTCGACCAATCCCCGACTTACGCAT-CTCGCCCCTC
771 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTC
** * * *
16948716 TTCCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTAACTTAGGCATACAGA
835 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16948769 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAATCGGACCGACGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
* * * * * * * *
16948834 TGGCAGCACATCCTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGACACCATCGC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGT
* * *** **
16948899 CGGAGAACCTAACCGACGGCGTTGGGGTTCCGGCGATCGGGGATATCGGGGGGGGCTGTGCGCAC
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGGC-CAGGGGG-TGTGCGCAC
16948964 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
193 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16949029 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTG
258 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16949094 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAA
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
16949159 TTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
387 TT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
16949224 CTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
451 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
16949289 GTCATCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAA
516 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA
* * * * *
16949354 AAATGGCATTGTCACGACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCA
581 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
16949419 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCACCCGCCTGCTCGTTTCGTCGG
646 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGG
* * *
16949484 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCA
* * * * *
16949549 GGATCGGCAGTACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCCTCCTGCCCCTCTAGCTG
776 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * *
16949614 GCCT-AGTGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGA
841 G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * ** * *
16949661 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAATATCGAACCAAAACGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
* * * * * * ***
16949726 CGACAGCACCTGCTAGGCTTGGGCATGTGTTGGTGCCATATTTTTCTTCACCGGGACACCATTAC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGT
* * * * **
16949791 CGGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGAGGCCAGGTAGTGTGCGCACATG
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATG
* * *
16949856 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTGGAGAA
196 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
16949921 CTCACACTCCCGTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGCGTTT
261 CTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
16949986 GGAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATAT
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-T
* * * *
16950051 TTTTGTGAATGTCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTG
389 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
16950116 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
454 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
16950181 GTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAA
519 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAA
* **
16950246 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCATAG
584 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * *
16950311 CTTGCGCATCCCGCCTCTCTGGCCGGCGCAGTGCCCACCCGGCCACAC-GCTCATTCCGTCGGTT
649 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGC-CTGCTCGTTTCGTCGGTT
* * *
16950375 GGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGG
** * * * * ** *
16950440 ATCGATAGCACGCAGAGGGGAACCCGACCGATCCTCGACTTACGCATCCCACCCCTCTGGCCGGT
778 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
** ** *
16950505 TGAATGCCTACACGCTCGTTTCGTGAGTTGACTTAGGCATACGGA
843 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16950550 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGATGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTT
* * * * * *
16950614 GCGGCATCAAATGCTGGGCTCGGGCATATGCTGGTGTCGTATTTTTCTTTGA-CGGGACACCTTC
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC-TTCACCGGGACACCATC
*
16950678 GTCGGAGAACCTAACC-AGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGTGTGCGCA
129 GTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCAG-GGGGTGTGCGCA
* *
16950741 CATGATGTGCGATTGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCG
192 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
16950805 AGAACTCAAACCCCTTAAAGAGCATTTTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAG
257 AGAACTCACACCCCTTAAAGAGCA--TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
16950870 TGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTGTAGCTG
320 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
16950935 AATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACAAAGTTTGGGGTCAAAAATCC
385 AA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* **
16951000 TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAAC
449 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
16951065 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAG
514 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAG
* *
16951130 AAAAATGGCATTGGAATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
579 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
16951195 CACGGCTTGTGCATCCCGCCTCTCTGGGCGACGTAGTGCCCGCCCACCCACCCGCTCGTTTCGTC
644 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTC
* * ** **
16951260 GATTGGCTTAGGCATGCAAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAG
709 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAG
* * * * *
16951325 TAGGATCGGCAGCACGCAGATGGGGACCC-AGTCGATCCCTGGCTTGCGCATACTGCCCCTCTGG
774 CAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * *
16951389 CCGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
838 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
16951439 GTTCATTCCCAG--T---C-TA---AG---------A-TC--AGAT-----CGGACCGAGGG-TG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
* ** *
16951477 CCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGACACCATTG
66 -CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCG
* * *
16951542 TCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGTCAGGGGGTGTGCGCAAAT
130 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACAT
* *
16951607 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
195 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16951672 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTC
260 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
16951737 TGAAATAGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCCAATTTTTAGCTGAAGT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
* * *
16951802 TTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAATTTAGGGCCAAAACTCCTTCT
388 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
16951867 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
453 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
16951932 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAA
518 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAA
** * *
16951997 ATGGCATTGGCATGGTGGAACTAT-AACGATGTGCCTAAACCCACCTACCACCCTATCGATCCAA
583 ATGGCATTGGCATGGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
16952061 GGCTTGCACATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCA-CC-CAT--TCGTTTCGTCGGT
647 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGGT
* * ** * * *
16952122 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-TTGAATCGAGGCTTTCGGCAGCA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACT-GAGGGTTGCGGCAGCA
* * * * *
16952186 GGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCTACCCCTCTGGCCA
776 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
*
16952251 GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
841 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * * *
16952298 GTTCATTCGCAGTCTAAACATACGAAGTTGACTCCCAATCTAAGATCGGACCGGAGCGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
** * * *
16952363 CGATAGCACATGCTGGGCTCGGGCATTTGCTGGTACCGTATTTTTCTTCACCGAGACACCATCGT
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGT
* * * * * * *
16952428 CGGAGAACTTGACCGGCGACATTGGGGTTACGGTGATCAGGTGGGCC-GGGGGTGGTGTTCGCAC
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGT-GTG--CGCAC
* * *
16952492 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCGTCAAACCTTGA
193 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16952557 GAACTCACACCCCTTTAAAGAGGATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTG
258 GAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16952622 TCTAAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
16952675 CTGAAAAAAT
Statistics
Matches: 5735, Mismatches: 704, Indels: 240
0.86 0.11 0.04
Matches are distributed among these distances:
858 2 0.00
859 170 0.03
860 1 0.00
861 2 0.00
862 8 0.00
863 518 0.09
864 47 0.01
865 16 0.00
868 6 0.00
870 90 0.02
871 10 0.00
872 18 0.00
873 27 0.00
874 172 0.03
875 82 0.01
876 16 0.00
877 2 0.00
878 20 0.00
879 14 0.00
880 296 0.05
881 62 0.01
882 296 0.05
883 16 0.00
884 25 0.00
885 110 0.02
886 21 0.00
887 440 0.08
888 80 0.01
889 1656 0.29
890 300 0.05
891 273 0.05
892 498 0.09
893 422 0.07
894 8 0.00
895 5 0.00
896 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATCGT
CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATG
GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
Found at i:16950577 original size:26 final size:26
Alignment explanation
Indices: 16950541--16950593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16950531 GTTGACTTAG
*
16950541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16950567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16950593 G
1 G
16950594 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16954018 original size:26 final size:26
Alignment explanation
Indices: 16953989--16954041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953979 GTTGACTTAG
*
16953989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16954015 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16954041 G
1 G
16954042 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16955800 original size:26 final size:26
Alignment explanation
Indices: 16955753--16955805 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16955743 GTTGCCTTAG
* *
16955753 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTAAGTCACAGTCTAA
* *
16955779 GCATACGGAGTTAATTCACAGTTTAA
1 GCATACGGAGTTAAGTCACAGTCTAA
16955805 G
1 G
16955806 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAAGTCACAGTCTAA
Found at i:16958386 original size:26 final size:26
Alignment explanation
Indices: 16958350--16958402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16958340 GTTGACTTAG
*
16958350 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16958376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16958402 G
1 G
16958403 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16959208 original size:877 final size:875
Alignment explanation
Indices: 16952685--16961885 Score: 11492
Period size: 877 Copynumber: 10.5 Consensus size: 875
16952675 CTGAAAAAAT
* * * *
16952685 TTTGGGGACAAAACT-CTAGCTGAAAAAATTTTGAAAAATCCCGAACCTTAAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
16952749 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
65 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
16952814 TATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
130 TATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
16952879 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGCTCGC
195 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC-CCC
* * * * *
16952944 CCGCCC-AT--TTT-GTTGCTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAACCG
259 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * *
16953005 AACCGAGGGTTGTGGCTGCAAGATCGGTAGCACGCAGAGGGGGACCC-AGTCGATCCTCGACTTG
324 GACCGAGGG-T-T-GC-G---G--C---AGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTG
* * *
16953069 CGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGTCATAC
376 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
16953134 AGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC---G----GA-C---CGAGGGT
441 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGT
* * * * *
16953174 TGTGACAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTTCTCTGGGACACCATC
506 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATC
* * * * ** * * *
16953239 GTCGGAGAACTTGACCGGCGACAGTGGGGTACCGACAACCGGGGGTGGTCGGGGGGGTGTGCGCA
571 GTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGG-GGCCGGGGGGGTGTGCGCA
* * *
16953304 AATGATGTGCGATGGATGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCG
635 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
16953369 CA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAG
700 -AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
16953433 TGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
764 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
**
16953498 AATGCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
829 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* *
16953546 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
16953611 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACATGAAGGCTTAAGGAACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
*
16953676 ATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
*
16953741 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG---CTC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCCC
* * * * * * * *
16953803 GCCCACCCATTTCGTTGGTTGGCTTTGGCATATGGAGTTCGTTCCCAGTCTAAGATCAGATCGGA
261 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * *
16953868 CTGAAGGTTGCGGTAGCAGGATCCGCAGCACATAGAGGGAGAACCGATCGATCCCCGACTTGGGC
326 CCGAGGGTTGC-G--GCAGCA--CGCAG-----AG-GGG-GACCCGACCGATCCCCGGCTTGCGC
** * *
16953933 ATCCCATCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
379 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
16953998 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGATCGAG
444 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA----A-CGAG
* * *
16954063 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTCTTCTTCACCGGGACACC
503 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACC
** * * * *
16954128 ATCGTCGGAGAACCTGAATGGCGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCG
568 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * *
16954193 CACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCT
633 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
16954258 TGAGAACTCACACCCCTTTAAAGAGCATTTGAGAATTTACAAGTTTGCTGCCAGTAGCCATTAAA
698 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
16954323 GTGTCTAAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCG
763 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
16954388 GAAGTTTTTTGTGCATGGCAAAAAAAATACAAGGATCATGTCTATCAAG
828 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CTCTACCAAG
* * * * *
16954437 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCAAACGGTGAAAAGTTTCAAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
16954502 CGTGAAAAGTAGAAAACGAGTCGTCTTGCCGTGAAACTTCAAATGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
16954567 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAATATGTGCCCAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
16954632 CTACCACCCTATCGATGCACGGCTTGCGCAGCCCGCCTCTCTCGTCGACGTAGTGCCCG---CTC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCCC
* * * *
16954694 G--C-CT-ATTTCGTCGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAA
261 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
** * ** * *
16954755 CTAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACTTGACCAATCCCCGGCTTGCGT
326 CCGAGGG-T----T-----G--CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * *
16954820 ATCCCGCCCCTCTGGTCGGCTGTGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCAAACAGA
379 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * **
16954885 GTTCATTCCCAGTCTAAGCATTCGAAGATCATTCCCAGTCTAAGATCAGATCGGTTCGAGGGTTG
444 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACGAGGGTTG
* * *
16954950 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGACACCATCGT
508 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGT
* * * *
16955015 CGGAGAACCTGACCCACGACATTGGGG-TTCAAGCGAT---------CGGGGGGGTGTGTGCACA
573 CGGAGAACCTGACCGACGGCATTGGGGTTTCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* ** *
16955070 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCTTGAG
637 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16955135 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGT
702 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16955200 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAAT
767 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
16955265 GTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
832 TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* **
16955310 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTGGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
16955375 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTCAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
*
16955440 ATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16955505 CTACCACCCTATCGATCCACGACTTGCACATCCCGCCTCTCTGGCCGGCATAGTGCCCG---CCC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCCC
* * * *
16955567 GTCCGCTCGTTTCATCGGTTGGTTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
261 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** * *
16955632 CCGAGGGTTGCAACAGCAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCTTGGCTTACGA
326 CCGAGGGTT------GC--G---G-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * ** *
16955697 ATCCCGCCACTCTGGCCGACTAAGCACCCATACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGA
379 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
16955762 GTTCAGTCCCAGTCTAAGCATACGGAGTTAATTCACAGTTTAAGATCAAACCGGACTGAGGGTTG
444 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTG
* * * * * *
16955827 C-AGCAACACATGCTAGGCTCAGTCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGACACCATCG
508 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCG
**
16955891 TCGGAGAACCTGACCGACGGCATTGGGG-TTCTGACGATC-GGGGGG-TTGGGGGGTGTGCGCAC
572 TCGGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
*
16955953 ATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
636 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16956018 GAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGAAGCCATTAAAGTG
701 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
16956083 TCTAAAATGGGGACATTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
766 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
16956148 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
831 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CTCTACCAAG
* * * * *
16956194 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA-ACTGAATCGTAAAAGGTTTCCAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
16956258 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
** * *
16956323 ATGAATTTACAAGCCAGAAAAATGGCATTGGTGTGGTAGAAATATGAAGATGTGCCAAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
16956388 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-CC
** ** *
16956453 CTTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGATCGG
260 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * *
16956518 ACTAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCGATCCCTGGCTTGCG
325 ACCGAGGGTTGC-G--GCA-G--C-AC-G--C--AGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
16956583 CATCCCGCCCCTCTGGTTC-GCTGAGAGCCCGCACACTCGTTTTGTGGGTTGAATTAGGCATACG
378 CATCCCGCCCCTCTGG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
16956647 GAGTTCATTCCCAATCTAA-TAT-C-G-G---A----C---C---G----GACC--A--AGGGTT
442 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTT
* * * * * *
16956687 GCGGCAGCACATTCTAGGCTCGGGCATGTGCTGGTGTCGCATTTTGCTTCGTCGGGACACCATCG
507 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCG
* *
16956752 TCGGAGAACCTGACCGGCGGCATT-GGGTTTCTGACGATCGGGAGGGCCGGGGGGGTGTGCGCAC
572 TCGGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* * *
16956816 ATAATGTGCGATGGGTG-TGGGTACTTGGCCCTTGTATTGGCCCTCTATCCCTCATCAAACCTCG
636 ATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
16956880 AGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGT
700 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * *
16956945 TTTTGAAATGGCGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGA
765 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
16957010 ATTTTTTTGTGCATGCCAATAAAAATACAAGGACCACATCTACCAAG
830 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* * * **
16957057 TTTGGGGTCAAAACGCCTTCTGAAAAAATTTTAAAAAATCCCGGACCGTAAAAAGTTTTGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
16957122 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
** * *
16957187 ATGAATTTACAAGTTAGAAAAATGGCATTGGCACGGCAGAAATATGAACATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16957252 CTACCACGCC-ATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACATAGTGCCCG---CC
196 CTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCC
* * *
16957313 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGG
260 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * ** * * *
16957378 A-TGAGGGTGGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGTCAATCCCTGACTTGCG
325 ACCGAGGGT---TGC-G---G--C---AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * *
16957442 CGTCTCGCCCCTCTGGCCGGCTGAGAGGCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
378 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
16957507 AGTTCATTCCCAGTCT----AT-----G---A-T--C-G-----GACCAGA-C---CGAGGGTTG
443 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTG
* *
16957547 CGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGT
508 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGT
* * * * ** *
16957612 CGGAGAACCTAACCGGCGGCATTGGCGTTCCGGTGATCGGAGGGGCC-GGGGGGTGTGCGCACAT
573 CGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
*
16957676 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
638 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
16957741 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
703 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
16957806 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGACTT
768 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
16957871 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAGG
833 TTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* *
16957915 TTTAGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT-CCGAAACCGTAAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAA
** * *
16957979 TTTTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTG
65 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
16958044 TACGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
130 TATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
*
16958109 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
195 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-C
* ** * * * * * **
16958174 CTGCCCATTCATTTCATCTGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATTG
259 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * *
16958239 GATCGAGGGTTGCGGTAGCACCCAGAGGGGAACCGGGCCGATCCCCGGCTTGCGCATCCCGCCCC
324 GACCGAGGGTTGCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
16958304 TCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCT
389 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
16958369 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGACAGCACA
454 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACGAGGGTTGCGACAGCACA
** * * * * *
16958434 TGCTGGGCTCGAACATGTGCTGGTGCCGCGTTTTTCTTTGCCGGGATAGCATCGTCAGAGAACCT
518 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCT
* * * * * *
16958499 GACCGGCGACATTGGGGTTT-TAGCAATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGTG
583 GACCGACGGCATTGGGGTTTCGA-CGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCG
*
16958563 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
646 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * ** * *
16958628 GCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGAGATTAATGTGTCTGACATGG
711 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16958693 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
776 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
16958758 CATGCCAACAAAAATACAAGGATCA-TGTACCAAG
841 CATGCCAACAAAAATACAAGGATCACTCTACCAAG
* * *
16958792 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAAAATCCCGAACCTTAAAAAGTTTTAAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * ** *
16958857 TGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAAGACCGTTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * *
16958922 ATGAATTTACAAGCCAGAAAAATCGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** ** * *
16958987 ATACCACCCTATCGATCCACGGCTTGCGCATCACGTTTCTCTGGTTGGCGTAGTGCTCGCCCATC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-CC
* * * ** *
16959052 CGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAATCTAAGATTGGACCAG
260 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * *
16959117 ATTGAGGGTTGCGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCT
325 ACCGAGGGTTGCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* **
16959182 CTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTA
390 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * ** *
16959247 GTGTAAGCATTCGGAGTTCATTCCAAGTCTAAGATCAGACCGAACTGAGGGTTACGGTATCACAT
455 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTGCGACAGCACAT
* * * * * * * *
16959312 GCTAGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTGCTGGGACACCATCGCCAGAGAACCTG
519 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTG
* * * *
16959377 ACCGACGACATTGGGGTTCCGACGATCAGGGGGGGCCACGAGGGGGTGTGCGTACATGATGTGCG
584 ACCGACGGCATTGGGGTTTCGACGATC-GGGGGGG-C-CGGGGGGGTGTGCGCACATGATGTGCG
*
16959442 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
646 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
16959507 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
711 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
16959572 GGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTTTG
776 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
16959637 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
841 CATGCCAACAAAAATACAAGGATCA-CTCTACCAAG
* * * * **
16959673 TTTGGGGCCAAAACGCCTTCTGAAAAAATTTGAAAAAATCCTGAACCCTAAAAAGTTTTGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
16959738 CGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * *
16959803 ATGAATTTACAAGCTAGAAAAATGGCATTGGCATGGCAAAAATAT--AGATGTGCCTAAGCCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
16959866 CTACCACCCTATCGATCCACGGCTTGCGCATTCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-CC
* *
16959931 CGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
260 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * *
16959996 ACCGAGGGTTACGGCAGCACGCAGAGAAGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCT
325 ACCGAGGGTTGCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
16960061 CTGGCTGACTGGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
390 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
16960126 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACAT
455 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACGAGGGTTGCGACAGCACAT
* * *
16960191 GCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCAGAGAACCTG
519 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTG
* *
16960256 ATCGACGGCATTGGGGTTTCGACGTTCGGGGGGGCCGGGGGGGGCTGTGCGCACATGATGTGCGA
584 ACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGG-TGTGCGCACATGATGTGCGA
*
16960321 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
647 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
16960386 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GG
712 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
**
16960450 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCATTTTGTGC
777 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
16960515 ATGCCAACAAAAATACAAGGATCACGTCTACCAAG
842 ATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* * *
16960550 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAATCCCGAACCGTAAAATGTTTCGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
16960615 CATGAAAAAAAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * *
16960680 ATGAATTTACAAGCCAGAAAAATGGCATTGGCACGGTAGAAATATGAAAATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
16960745 CTACCACCCTATCGATCCGCGGCATGCGCATCCCGCCTCTCTGGCTGACGTAAAT-CCCGCACGC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT-AGTGCCCGC-CCC
* * * * **
16960809 CCGCCCGCTCATTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTTCCAGTCTAAGATTGGACCG
259 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * *
16960874 AATCGAGGGTTTCGGCAGCAGGATCGACAGCACGCAGAGGGGGAGCTGACTGATCCCCGACTTGC
324 GACCGAGGG-TT-----GC--G---G-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
16960939 GCATCTCGTCGCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATAGG
377 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
16961004 GAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C---G----GA-C---CGAGGGTT
442 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTT
* * * * *
16961044 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGCTGAGACACCATCG
507 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCG
* * *
16961109 TTGGAGAACCTGACCGACGGTATTGGGG-TTCCAGCGATCGGGGGGGCC-GGGGGGTGTGCGCAC
572 TCGGAGAACCTGACCGACGGCATTGGGGTTTCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCAC
*
16961172 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
636 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
16961237 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
701 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16961302 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAA
766 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
16961367 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
831 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTACCAAG
* * *
16961413 TTTGGGACCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
16961478 CGTGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
16961543 GTGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
131 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
16961608 CTACCACCCTATCGAGCCACAGCCTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCTCCTGCC
196 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC-CCC
* * * * *
16961673 CGCCCGTTCGTTTTGTCGGTTGGCTTAGGCACACGGAGTTCATTCCCAATCTAAGATCAGACCAG
260 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
16961738 AACAAAGGTTGCGACAGCAGGATCGACAGCAAGCAGGCGGGGA-CCGATCGATCCCCAGCTTGCG
325 ACCGAGGGTTGCG---GCA-G--C-AC-GC-AG-A-G-GGGGACCCGACCGATCCCCGGCTTGCG
* * * *
16961802 CATCCCGCCCTTCTGGCCGGCCGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
378 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
16961867 AGTTCATTCCCAGTCTAAG
443 AGTTCATTCCCAGTCTAAG
16961886 AACAGACCAG
Statistics
Matches: 7324, Mismatches: 812, Indels: 407
0.86 0.10 0.05
Matches are distributed among these distances:
851 105 0.01
852 3 0.00
854 9 0.00
855 9 0.00
856 3 0.00
857 16 0.00
858 468 0.06
859 211 0.03
860 80 0.01
861 483 0.07
862 315 0.04
863 679 0.09
864 201 0.03
865 108 0.01
866 4 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 3 0.00
871 1 0.00
872 7 0.00
873 472 0.06
874 2 0.00
875 3 0.00
876 14 0.00
877 1173 0.16
878 164 0.02
879 972 0.13
880 14 0.00
881 171 0.02
882 99 0.01
883 198 0.03
884 277 0.04
885 3 0.00
886 2 0.00
887 338 0.05
888 8 0.00
889 4 0.00
890 4 0.00
891 583 0.08
892 102 0.01
894 4 0.00
896 5 0.00
897 1 0.00
898 1 0.00
899 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGCGACAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGACACCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACTCTACCAAG
Found at i:16959279 original size:26 final size:26
Alignment explanation
Indices: 16959227--16959279 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16959217 GTTGACTTAG
** *
16959227 GCATACGGAGTTCATTCGTAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
16959253 GCATTCGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16959279 G
1 G
16959280 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16960142 original size:26 final size:26
Alignment explanation
Indices: 16960106--16960158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16960096 GTTGACTTAG
*
16960106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16960132 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16960158 G
1 G
16960159 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16961938 original size:158 final size:159
Alignment explanation
Indices: 16961671--16962044 Score: 466
Period size: 158 Copynumber: 2.4 Consensus size: 159
16961661 TGCCCTCCTG
* * * * * * *
16961671 CCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCACACGGAGTTCATTCCCAATCTAAGATCAGACC
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACC
* *
16961736 AGAACAAAGGTTGCGACAGCAGGATCGACAGCAAGCAGGCGGGGA-CCGATCGATCCCCAGCTTG
66 AGAACAAAGGTTACAACAGCAGGATCGACAGCAAGCAGGCGGGGACCCGATCGATCCCCAGCTTG
16961800 CGCATCCCGC-CCTTCTGGCCGGCCGAGCA
131 CGCATCCCGCACCTT-TGGCCGGCCGAGCA
16961829 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACC
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACC
* * * * * * * * *
16961894 AGAACGAGGGTTACAACAGTAGGATCGGCAGCACGTAGAG-GGGGACCCGGTCGATCCTCGGCTT
66 AGAACAAAGGTTACAACAGCAGGATCGACAGCAAGCAG-GCGGGGACCCGATCGATCCCCAGCTT
* ** *
16961958 GTGCATCCCGCACCTTTGGCCGGTTGAGCG
130 GCGCATCCCGCACCTTTGGCCGGCCGAGCA
* * * * *
16961988 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGAACTTCATTCCCAGTCTAAG
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16962045 CATACAGATT
Statistics
Matches: 186, Mismatches: 27, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
158 93 0.50
159 89 0.48
160 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACC
AGAACAAAGGTTACAACAGCAGGATCGACAGCAAGCAGGCGGGGACCCGATCGATCCCCAGCTTG
CGCATCCCGCACCTTTGGCCGGCCGAGCA
Found at i:16962950 original size:26 final size:26
Alignment explanation
Indices: 16962910--16962962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16962900 GTTGACTTAG
*
16962910 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
16962936 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
16962962 G
1 G
16962963 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:16963085 original size:185 final size:185
Alignment explanation
Indices: 16962751--16963121 Score: 584
Period size: 185 Copynumber: 2.0 Consensus size: 185
16962741 GTTGGCTTAG
*
16962751 GCATACGGAGCTCATTACCAGTCTAAGATCAGACCGGAATGAGTGTTGTGGCATCAGGATCGACA
1 GCATACGGAGCTCATTACCAGTCTAAGATCAGACCGGAATGAGTGTTGTGGCAGCAGGATCGACA
* * *
16962816 GCACGCAGTGGGGGACCTGGACGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGC
66 GCACGCAGTGGGGGACCTGGACGATCCTCGACTTATGCATCCCGCCCCTCTGGCAGACTGAGCGC
16962881 CCGCACGCTCATCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCATCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
16962936 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGGAATGAGTGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGCTCATTACCAGTCTAAGATCAGACCGGAATGAGTGTTGTGGCAGCAGGATCGACA
* * *
16963001 GCACGTAGTGGGGGACCTGGACGATACC-CGACTTATGCATCCCGCCCCTTTGGCTAG-CTGAGT
66 GCACGCAGTGGGGGACCTGGACGAT-CCTCGACTTATGCATCCCGCCCCTCTGGC-AGACTGAGC
* * * * *
16963064 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
129 GCCCGCACGCTCATCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
16963121 G
1 G
16963122 ATCAGATCGG
Statistics
Matches: 170, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
185 167 0.98
186 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGCTCATTACCAGTCTAAGATCAGACCGGAATGAGTGTTGTGGCAGCAGGATCGACA
GCACGCAGTGGGGGACCTGGACGATCCTCGACTTATGCATCCCGCCCCTCTGGCAGACTGAGCGC
CCGCACGCTCATCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16963175 original size:159 final size:159
Alignment explanation
Indices: 16962936--16963280 Score: 442
Period size: 159 Copynumber: 2.2 Consensus size: 159
16962926 CCCAGTCTAA
* * *
16962936 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGGAATGAGTGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
16963001 GCACGTAGTGGGGGACCTGGA-CGATACCCGACTTATGCATCCCGCCCCTTTGGCTAGCTGAGTG
66 GCACGCAGAGGGGGACC-CGATCGATACCCGACTTACGCATCCCGCCCCTTTGGCCAGCTGAGCG
* *
16963065 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* **
16963095 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGG-ATCGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAAT-GAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
16963159 AGCACGCAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCTTTTGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCCGATCGATACCCGACTTACGCATCCCGCCCCTTTGGCCAGCTGAGCG
* *
16963224 GCCGCACGCTCATTTTGTGGGTTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAG
*
16963254 GCATACGGAGTTCACTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
16963281 CATACGGAGT
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
158 4 0.03
159 155 0.97
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGATCGATACCCGACTTACGCATCCCGCCCCTTTGGCCAGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16963290 original size:26 final size:26
Alignment explanation
Indices: 16963254--16963306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16963244 GTTGACTTAG
16963254 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
16963280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16963306 G
1 G
16963307 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16964189 original size:26 final size:26
Alignment explanation
Indices: 16964137--16964189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16964127 GTTGACTTAG
* *
16964137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
16964163 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
16964189 G
1 G
16964190 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:16965054 original size:26 final size:26
Alignment explanation
Indices: 16965025--16965077 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16965015 GTTGACTTAG
16965025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16965051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16965077 G
1 G
16965078 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16965146 original size:154 final size:154
Alignment explanation
Indices: 16964940--16965249 Score: 521
Period size: 154 Copynumber: 2.0 Consensus size: 154
16964930 AGCACGCAGA
* * * * * * *
16964940 GGGGGACCCGATCGATCCTCGGCTTGCGTATCCCGCCCCTCTAGCCGACTGAGTGCCCGTACGCT
1 GGGGGACCCGACCCATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACACT
*
16965005 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
16965070 AGTCTAAGATCGGACCGGACTGAG
131 AGTCTAAGATCGGACCGGACTGAG
* *
16965094 GGGGGACCCGACCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACT
1 GGGGGACCCGACCCATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACACT
*
16965159 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCC
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
16965224 AGTCTAAGATCGGACCGGACTGAG
131 AGTCTAAGATCGGACCGGACTGAG
16965248 GG
1 GG
16965250 TTGCGGCAGC
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
154 145 1.00
ACGTcount: A:0.18, C:0.32, G:0.28, T:0.22
Consensus pattern (154 bp):
GGGGGACCCGACCCATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACACT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACTGAG
Found at i:16965209 original size:26 final size:26
Alignment explanation
Indices: 16965179--16965231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16965169 GTTGACTTAG
16965179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16965205 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16965231 G
1 G
16965232 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16966979 original size:26 final size:26
Alignment explanation
Indices: 16966950--16967002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16966940 GTTGACTTAG
*
16966950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16966976 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16967002 G
1 G
16967003 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16968760 original size:26 final size:26
Alignment explanation
Indices: 16968730--16968782 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16968720 GTTGACTTAG
16968730 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* * *
16968756 GCATACGGGGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16968782 G
1 G
16968783 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:16969643 original size:26 final size:26
Alignment explanation
Indices: 16969613--16969665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16969603 GTCGACTTAG
*
16969613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16969639 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16969665 G
1 G
16969666 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16970065 original size:884 final size:883
Alignment explanation
Indices: 16965095--16972137 Score: 9688
Period size: 884 Copynumber: 8.0 Consensus size: 883
16965085 CGGACTGAGG
* * * *
16965095 GGGGACCCGACCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTC
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* *
16965160 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * *
16965225 GTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCACGAGCATGTGCTGGTG-C
131 GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * ** * *
16965289 TGCATTTTTTTTCGCCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTACGGTTTC-AGTG
196 -GTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CG
* * *
16965353 ATCGGGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATT
259 ATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
16965418 GG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
16965482 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
16965547 CTTATACACTTCGAGTTTTGAGATGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
16965612 CTACCAACTTTGGGGCCGAAACTCCTTGTGAAAAAATTTTATAAAATCTCGAACCGTAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
16965677 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
16965742 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
648 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * * *
16965807 AAACCCACCTACCACCCTATCGATCTACAGCTTGTGCATCCCGCCTCTCTAGCCGGCATAGTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCC
* * *
16965872 CGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGAT---A
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * *
16965934 TC-AGATTGAGGGTTGCGGCAGCAGGATAGGTAGCATGCAGAA
843 CCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG-A
* * *
16965976 GGGGACCCGATCGATCCCCGGTTTGCACAT-CCGACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * ** **
16966040 CGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTTGTTCCC
65 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * *
16966105 TGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGC
130 AGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * * * * *
16966170 CGCATTTTTCTTTGTCGGGACACCATCGTCGGTGAACCTGACCGACGGCATTGGGATTTCGACGA
195 CGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
16966235 TCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
260 TC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
16966300 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
16966365 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
16966430 GTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTGTGCATGCCATCAAAAATACAAGGATCACGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
16966495 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
*
16966560 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* *
16966625 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCTTGGCAGAAATATGAAGATGTGTCT
648 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * * * * *
16966690 AAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTAGCTGACGTAGTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCC
* * *
16966755 CGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCGCAGTCTAAGAT
778 CG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
16966820 CAGACCGAACCAAGGGTTGCGACAGCAGGATCGGCAGTACGTAGGT
839 CGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA-GA
* * * * * *
16966866 GGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTC
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
*
16966931 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
16966996 GTCTAAGATGGGACCGGAACAAGGGTTGCGACAGAACATGCTGGGCTCGGGCATGTGCTTGTGCC
131 GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * *
16967061 GTATTTTTCTTCG-CTGGGACACCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGA
196 GTATTTTTCTTCGTC-GGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
16967125 TCGGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATT
260 TC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
16967190 GGCCCCCTATCCCTCATGAAATCTCGAGAACTCACACCCCCTTAAAGAACATTAGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
16967255 AGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
16967319 CTTATACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCATCAAAAATGCAAGGATCACGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
16967384 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
16967449 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* *
16967514 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTACAT
648 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* *** *
16967579 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAACGTAGTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTG--
** * * * *
16967644 CACTCGCCCGCATGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGATCATTCCTAGTCTAAGAT
776 C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * ** * * *
16967709 CGGATTGGATCGAGGGTTGCAACAGCAGGATCAGCAACACGCAGA
839 CGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
* * * * * *
16967754 GGGGGACCCAATCGATCCCCGGCTTGCACATCCCGCCACACTGGCCGACTTAGCGCCCGTACGCG
1 -GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-
* * ** * *
16967819 TCTTTTCGTGGGTCGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGAAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
16967884 CAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
129 CAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * *
16967949 TC-TCATTTTTCTTCGTCGGGACATCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTTCGGC
194 TCGT-ATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
16968013 GATCGGCGGGGCCGGGGGGGTTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
258 GATCGG-GGGG-CGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
16968078 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTAACACCTCCTTAAAGAGAATTTCAGATTTT
320 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
16968143 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
385 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
16968208 AATCTTGTACACTTCAAGTTTTTAGCAGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
450 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
*
16968273 CG-CTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
515 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* *
16968337 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
580 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
*
16968402 GGGACCATTGAATGAATTTACAAGCCAG-AAAATAGGCATTGGCATGGCAGAAATATGAAGATGT
645 GGGACCATTGTATGAATTTACAAGCCAGAAAAAT-GGCATTGGCATGGCAGAAATATGAAGATGT
* * *** * *
16968466 GCATAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTAACGTAA
709 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAG
* *
16968531 TGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCTAGTCTA
774 TGCCCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * *
16968596 AGATCGAACCGAAATGAGGGTTGCGGTAGGAGGATCGGTAGCTCGCAGA
835 AGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
* * * * * * * *
16968645 GGGGGACTCGACCGATCGCTGACTTACGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCT
1 -GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * *
16968710 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATACGGGGTTCCTTCCC
65 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
16968775 AGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTACTGGTGT
130 AGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * * * *
16968840 CGCATATTTCTTCATCGGGACACCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGA
195 CGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
** * * *
16968905 TCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGCTACTTGGCCATTATATTG
260 TCG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16968970 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCGTAAAGTGCATTTGAGATTTTACAG
324 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * * *
16969035 GATTGCTGCCAGTAGCAATTAAAGTGCCTGATATGAGGACACTTTTTT-AAATGATCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
16969099 TTGTACACTTCGAGTTTTTAGCAGAATTTTTTTATTCATGCCAACAAAAATACAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
16969164 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CAGATCCGTTAAAAGTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTT
* *
16969228 TCAAAAATCGTGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * ** ** * *
16969293 ACCATTGTATGAATTTACAATCCAGAAAAATGGCACTGGCACAGTGGAAATTTGAAGATGTACCT
648 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * * * * * * * * *
16969358 AAACACGCCTACCACTCTATCGATCCATGGCTTGTGCATCTCGCCTCTTTGGCTGGCGTATTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCC
* * *
16969423 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCGGA
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
16969488 CCGAACCAAGGGTTGCAGCAGCAGGATCGGCAACATGCAGA
843 CCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
* ** ** * *
16969529 GGGGACCTGGCCGATCCTTGGCTTGCGTATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTC
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * *
16969594 GTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
16969659 GTCTAAGATCAGACCGGACCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
131 GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
** *
16969724 GTATTTTTCTTCGTCGGGACACCATCATCAGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGA
196 GTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGA
* * *
16969788 TCGAGGCGACGGGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
260 TCG-GGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * * *
16969853 GGCCCGCTATCCATCTTCAAACCTCGAGAACTCAAACCCTCTTAAGGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
16969918 AGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTATCAAATGGTCACGAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
16969983 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
16970048 CTACCAAGTTT-GGGCCAAAA-TGCCTTCTGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGT
518 CTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
* * * * *
16970111 TTCAATAATCGTGAAAAATAGAAATCGAGTCATCTTGCCATGAAACTTCA-AGTGAAGCCTTAAG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA-TGAAGGCTTAAG
* * * *
16970175 GGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCACGACAAAAATATGAAGATGTGC
646 GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* *
16970240 CTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGGCATAGTG
711 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTG
* * * * * *
16970305 TCCGCCCGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATAG
776 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
16970370 GAGC-AGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAA
841 GACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG-A
* * * * * ** *
16970414 GGGGACCCGGTAGATCCCCGACTTGCGCATCCTGCCCATCTGGCCGGTTGAGCACCCGCACGCTC
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* *
16970479 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
16970544 GTCTAAGATCGAACTGCACCAAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
131 GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* *
16970609 GTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTAACC-ATCGG-ATTGGGGTTCCGATGA
196 GTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGA
* * *
16970672 T-------C-GGGAGGTGTGCGAACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGG
260 TCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
16970729 CCCCCTATCTCTCATCAAACCTCGGGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* **
16970794 TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGAAGACACTTTTTTCAAATGGTCACAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
16970859 TGTACACTTCAAGTTTTTAGCTTAATGTTGTTGTACATGCCAACAAAAATACAAGGATCATGTCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
16970924 ACCAAGTTTGGGGCCAAAACTCTTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT
520 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
*
16970989 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
585 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
* * *
16971054 CATTGTACGAATTTACAAGCCAGAAAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAA
650 CATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* *
16971119 ACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCATAGTGCCCG
715 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTG--C-
*** *
16971184 CTCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTAGTAGTTTAAG
777 C-CGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
16971249 ATCAGACC-AGACTGAAGGTTGTGGTAGCAGGATCGGTAGCACGTAGAA
837 ATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG-A
* * * *
16971297 GGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCTGTACGCTC
1 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * * * *
16971362 GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTGTAACCATATGGAGTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
16971427 GTCTAAGATCGGACTGGACTAAGGGTTGC-AGCAACACATGCTGGGCTCGGGCATGTGCTGCTAT
131 GTCTAAGATCGGACCGGACCAAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * *
16971491 CGTATTTTTCTTCGTCGGGACACCATCGCCGGATAACCTGACCGACAGAATTGGGGTTCCGACGA
195 CGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
16971556 T--------TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGG
260 TCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
** *
16971613 CCCGTTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16971678 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCAAAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
16971743 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
16971808 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CGAAACCCTAAAAAGTTT
520 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTT
* * *
16971872 CAAAAATCATGAAAAATAAAAAATGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* *
16971937 CCATTGTATGAATTTTCAAG-CTGAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
649 CCATTGTATGAATTTACAAGCCAG-AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* *
16972001 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAACCCGCCTCTCTGGCCGGCATAGTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTG--
* *
16972066 CACCCGCCCGCCCGCTCGTTTCCTCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
776 --CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*
16972131 TGGACCG
839 CGGACCG
16972138 GACTGAGCAT
Statistics
Matches: 5486, Mismatches: 611, Indels: 130
0.88 0.10 0.02
Matches are distributed among these distances:
874 233 0.04
875 222 0.04
876 3 0.00
878 1 0.00
879 6 0.00
880 53 0.01
881 236 0.04
882 59 0.01
883 964 0.18
884 1027 0.19
885 299 0.05
886 3 0.00
887 135 0.02
888 382 0.07
889 520 0.09
890 746 0.14
891 481 0.09
892 114 0.02
893 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
GTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
CGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
AACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
Found at i:16970527 original size:26 final size:26
Alignment explanation
Indices: 16970498--16970550 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16970488 GTTGACTTAG
16970498 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
16970524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
16970550 G
1 G
16970551 ATCGAACTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16974022 original size:863 final size:863
Alignment explanation
Indices: 16972070--16976414 Score: 5461
Period size: 846 Copynumber: 5.0 Consensus size: 863
16972060 AGTGCCCACC
* * ** * **
16972070 CGCCCGCCCGCTCGTTTCCTCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * *
16972135 CCGGACTGAGCATTGTAGCAGCACATGCTGGGC-TCGAGCATGTG-TGGTGCC-TCATTTTTCAT
66 CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTCG-GCATGTGCTGGTGCCGT-ATTTTTCTT
* * * * *
16972197 CACCGGGACACCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC-
129 CATCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCG
* * * * *
16972261 GGGGGGTGTGCGCACAGGACGTGCGATGGGTGCTGATACTTGGCCCTTGTATTGGCCCCTTATCC
193 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
16972326 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
16972391 GTAGCCACTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGATCACAAAATCTTGTGCACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** *
16972456 GAGTTTTTAGCTGAATTTTTTTGTACATAACAACAAAAATACAAGGATCACGTCTACGAAGTTT-
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * **
16972520 GGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATTGTG
453 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
16972585 AAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACATGATGGCTTAAGAGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
16972650 ATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
583 ATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
16972715 CACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT--------GCCCGCC
648 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
** * * *
16972772 CGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTAAATTCCCAGTCTAAGATCAGACCAGATTG
713 CGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTG
* * ** * * * * *
16972837 AGGGTTACGACAATAGGATCGG-TAGCATGCAGAGGGGCACCCGACTGATCCCCGACTTACGCAT
778 AGGGTTGCGGCAGCAGGATCGGCT-GCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCAT
*
16972901 CCCGCCCCTCTGGCCAGCTGAG
842 CCCGCCCCTCTGGCCAGTTGAG
* * * *
16972923 CGCCCGTACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * *
16972988 CCAGATTGAGGGTTGCGGCAGCACATGCTAGGC-TCGGGCATGTGCTGGTGTCGTATTTTTCTTC
66 CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTC-GGCATGTGCTGGTGCCGTATTTTTCTTC
* * * * * * * * **
16973052 ATCGAGACATCATCATCGGAGAACTTGACCAGTGGCATTAGGCTTCCGATGATCGGGGGGGCCGA
130 ATCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCG-
* *
16973117 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCGCTATCC
193 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
16973182 CTCATCAAACCTCGAGAACTCAAACCCCCTTGAAGAGGATTTGAGATTTTACAGGTTTACTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCA
*
16973247 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
16973312 GAGTTTTTAGCTGACTTTTTTTTTGCATGCCAACAAAAAAACAATGATCACTTCTACCAAG-TTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * **
16973376 GGGCCAAAACTCCTTCTAAAAAAATTTTTAAAAATCTCGAACCGTAACAA-TTTCAAAAATTGTG
453 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* *
16973440 AAAAATAGGAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* *
16973505 ATTTACAAGCCAGAAAAATGGCAATGGTATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
583 ATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
16973570 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGACCGGCGTAGGGCCCGCCCGCCCGCC
648 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * **
16973635 CGCTCGTTTCGTCGGTTGACTTAGGCATA-TGAAGTTCATTCCCTGTCTAAGATCGGATTGGACT
713 CGCTCGTTTCGTCAGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACT
* * * * *
16973699 GAGGGTTACGGCACCAGGATTGGCTGCACGAAGAGGGGGACCCGGCCGATCCCCGTCTTGCGCAT
777 GAGGGTTGCGGCAGCAGGATCGGCTGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCAT
*
16973764 CCCGCCCCTCTGGCCTGTTGAG
842 CCCGCCCCTCTGGCCAGTTGAG
** * *
16973786 CGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTTTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
16973851 CCGGACCGAGGGTTGCAACAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGTATTTTTCTTCG
66 CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTCGGCATGTGCTGGTGCCGTATTTTTCTTCA
* * * * *
16973916 TCGGGACACCATCGTCAGAGAACCTGACCGGCAGCATTGGGGTTCCGGCAATCGACAGGGGCTGG
131 TCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG--GGGGGCCGG
* * * *
16973981 GGGGGTGTGCACACAGGACGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
194 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
16974046 TCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGAATTTGAGATTTTACAGGTTTGCTGCCAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAG
*
16974111 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
16974176 GGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGG
389 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
16974241 GGCCAAAAATCCTTCTAAAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCCAAAATCATGA
454 GGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
* *
16974306 AAAATAAAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * * * * **
16974371 TTTACAAGCTAGAAAAATGGCTTTGGCATGGTAAAAATACGAAGATGTGCCTAAAAACACCTACC
584 TTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
16974436 ACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCC
649 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* *
16974501 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACAGGACTG
714 GCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACTG
* * * ** *
16974565 AGGGTTGCGGCAGCAGGATTGACAGCACGTC-GAGGGGGACCCGGTTGATCCCTGACTTGCGCAT
778 AGGGTTGCGGCAGCAGGATCGGCTGCACG-CAGAGGGGGACCCGGCCGATCCCCGACTTGCGCAT
* ** *
16974629 CCCGCCCCTGTCACCGGTTGAG
842 CCCGCCCCTCTGGCCAGTTGAG
* * * * * *
16974651 CACCCGTACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * ** *
16974716 CCGGACCGAGGGTTACAGCAGCACATGCT-GTCCTCTGACATGTGTTGGTGTCACAATTTTCTTC
66 CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTC-GGCATGTGCTGGTGCCGTATTTTTCTTC
* * *
16974780 GTCGGGACACCATCGTTGGAGAACCTGA-------CA----GG---CGGC-AT--GGGGGCCGGA
130 ATCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGG
* * * *
16974828 GGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTTGCACTTATATTGGCCCCCTATTCCT
195 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * **
16974893 CATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAC
260 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
16974958 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGC
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
16975023 GTTTTTAGGTGAATATTTTTGTACATGCCAACAAAAATACAAGGACCACGTCTACCATGTTTGGG
390 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
16975088 GCTAAAACTCATTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAA
455 GCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
16975153 AAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAAT
520 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
16975218 TTTCAAGCCAGAAAAATGGCATTGGCACGGTAGAAATATGAACATGTGCCTAAACCCACCTACCA
585 TTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16975283 CCCTATCGATCCACGGCTTTCGCATCCCACCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCG
650 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
** * * * *
16975348 CTAATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCATTCTAAGATTGGACCGGA-TCGA
715 CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GA
* * * ** * * * *
16975412 GGGTTGTGACAGCAGGATCGGCAGCAATCAGAGGGGGACCCGACCAATCCCTGGCTTGCGCATCC
779 GGGTTGCGGCAGCAGGATCGGCTGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCC
**
16975477 TACCCCTCTGGCCAGTTGAG
844 CGCCCCTCTGGCCAGTTGAG
* * *
16975497 CCCCCGCACGCTCG-TTCTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATAC
1 CGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C
* *
16975561 AGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACAGTAGCACATGCTGGGC-TCGA
63 --AG---------A--C------CGGA-C---C-GAGGGTTGCAGCAGCACATGCTGGGCTTCG-
** * * *
16975625 GCATGTGCTGGTGGTGCATTTTTCTTCATCGGGACACCATCGTCGGAGAACCTGACCGACGGTAT
103 GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGACACCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * *
16975690 AGGGGTTCCAGCGATCGGGGGTGGTCGGAGGGGGTGTGTGCACATGATGTGCGATGGGAGCTGGT
168 TGGGGTTCCGGCGATC-GGGG-GGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
16975755 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
230 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
16975820 CATTTGACATTTTACAGGTTTGCTGCCAGTAGACC-TTAAAGTATCTGAAATGGGGATACTTTTT
295 AATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
16975884 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAA
359 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * **
16975949 AAATACAAGTATCACTTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAGGTTTAAAAAATC
424 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATC
* * *
16976014 CCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
489 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
16976079 ATATGAAGGCTTAAGGGACCATTGTACT-AATTTACAAGCCAGAAAAATGGCATTGGCATGGCAG
554 ACATGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAG
** * * * *
16976143 AAATATGAAGATGTAACTAAATCCACCTACCACCATATCGATCCACCGCTCGCGCATCCCGCCTC
618 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* *
16976208 TCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGATTCGTCAGTTGGCTTAGGCATACAGAGT
683 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGT
* * * *
16976273 TCATTCCCAGTCTAATG-TCAGACCAGACTGAGGGTTGCTGCAGCAGGATCGG-TAGCATGCAGA
748 TCATTCCCAGTCTAA-GATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCT-GCACGCAGA
* ** *
16976336 GGGGGACCCGGCCGATCCCCGACTTGTGCATCCAACCCCTCTGGCCAGCTGAG
811 GGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGTTGAG
*
16976389 TC-CCCTCACGCTCGTTTCGTGGGTTG
1 -CGCCCGCACGCTCGTTTCGTGGGTTG
16976415 CGACAGCACA
Statistics
Matches: 3016, Mismatches: 392, Indels: 129
0.85 0.11 0.04
Matches are distributed among these distances:
845 7 0.00
846 644 0.21
847 2 0.00
848 1 0.00
850 3 0.00
851 4 0.00
853 91 0.03
854 66 0.02
855 185 0.06
856 275 0.09
858 2 0.00
859 1 0.00
861 1 0.00
862 2 0.00
863 516 0.17
864 59 0.02
865 444 0.15
866 3 0.00
867 4 0.00
868 1 0.00
871 2 0.00
872 70 0.02
873 2 0.00
879 1 0.00
883 2 0.00
886 3 0.00
887 2 0.00
890 3 0.00
891 5 0.00
892 606 0.20
893 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTCGGCATGTGCTGGTGCCGTATTTTTCTTCA
TCGGGACACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
TCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGG
GTTGCGGCAGCAGGATCGGCTGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCG
CCCCTCTGGCCAGTTGAG
Found at i:16975558 original size:26 final size:26
Alignment explanation
Indices: 16975529--16975581 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16975519 GTTGACTTAG
*
16975529 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16975555 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16975581 G
1 G
16975582 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16977239 original size:26 final size:26
Alignment explanation
Indices: 16977203--16977263 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16977193 GGGTTGACTG
*
16977203 CAGTCTAAGCATACAAAGTTCTTTCC
1 CAGTCTAAGCATACAAAGTTCATTCC
**
16977229 CAGTCTAAGCATACGGAGTTCATTCC
1 CAGTCTAAGCATACAAAGTTCATTCC
16977255 CAGTCTAAG
1 CAGTCTAAG
16977264 ATTGAACCGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
CAGTCTAAGCATACAAAGTTCATTCC
Found at i:16977722 original size:815 final size:820
Alignment explanation
Indices: 16976772--16979691 Score: 2842
Period size: 883 Copynumber: 3.4 Consensus size: 820
16976762 AAGGATCCTG
* * * *
16976772 TCTACCAAGTTTGGGACGAAAACTCCTTCTGAAAAAAT-TTTAAAAATTCCCGAACCATAAAAAG
1 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAAGTCCTGAACCATAAAAAG
* *
16976836 TTTTGAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
66 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
*
16976901 GGACCATTGCATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGC
131 GGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGC
*
16976966 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCTGGCGTAGTG
196 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTG
*
16977031 CCCGTCCGCCCGCTCGATTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
261 CCCGTCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
* * *
16977096 GATCGGACTGAAAGTTGCGGCAGCAGGATCGGTAGCATGCAAAGAGGGACCCG-A-C-CG-AT-C
326 GATCAGACTGAAGGTTGCGGC-GCAGGATCGGCAGCA-GCAAAGAGGGACCCGCACCTCGCATCC
* * * * * **
16977156 CCCTTTGGCCGACTGAGTGCCCGCATGCTCGTTCCGTGGGTTGACTGCAGTCTAAGCATACAAAG
389 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-C--T-TAAGCATACGGAG
* *
16977221 TTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTGC
450 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGC
* **
16977286 AGCAGCACATGCTGGGCTCGGGCAACTGCTGGTGCCGTATTTTTCTTCACCGGGACACGATTGCC
515 AGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACGATTGCC
* ** *
16977351 GGAGAACCTGATCGGTGGCATTGGGGTTCCAGTGATCGGGGGGGTC-GGGGG-GTGCGCACATGA
580 GGAGAACCTGACCGACGGCATTGGGGTTCCAG-GATCGGGGGGGCCGGGGGGTGTGCGCACATGA
16977414 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
644 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16977479 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTG
709 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
16977544 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-CAC-GC-A
774 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGACACTGCGA
* *
16977588 -CTACCACGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAA-TCCTGAACCATAAAGAG
1 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAAGTCCTGAACCATAAAAAG
*
16977651 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGCTTAAG
66 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* * * *
16977716 GGACCATTTTATGATTTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
131 GGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGC
* * *
16977781 CTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTC-CTTGCTCGACGTAGT
196 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCT-GGCGTAGT
* * **
16977845 GCCCGTCCGCATGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAA
260 GCCCGTCCGC----CCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * * *
16977910 GATCGGACCAAACCGAGGGTTGAGGCGACAGGATCGACAGCA-CATATTG-GGGTACCCGGTCCA
321 GATCAGATCAGACTGAAGGTTGCGGCG-CAGGATCGGCAGCAGCA-A-AGAGGG-ACCC-G--CA
* * *
16977973 TCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACCCTCGTTTGGTGGGTTGA
379 ----C--C-T-CGCA--TC-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
16978038 CT-TT-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGA-TCA
433 CTCTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGA
* * * * * **
16978100 GACCGGACCGAGGGTTACGGCAGCACAGGCTGGCCTTGGGCATGTACTGGTGCCACATTTTTCTT
498 -ACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTT
* ** *
16978165 CACCGGGACA-GCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCTGGGGGGGC
562 CACCGGGACACG-ATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGGATC-GGGGGGGC
* *
16978229 CGGGGGGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCAC
624 C-----G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16978294 CCTATCCCTTATCAAACCT-GAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTT
683 CCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
16978358 TGCTGCCAGTGGTCATTAATGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
747 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-----
16978423 TACACTTCGATTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCA
807 T---CTT-G------A-C---A----------C-TG------------C---G---A
** * * * *
16978480 CGTCTACCAAGTTTGATGCCAAAAGTCCTTCTGAAAAAAT-TTTAAAAAATCCCGAACCGTAAAA
1 --TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAAGTCCTGAACCATAAAA
* * * * *
16978544 AGTTTTAAAAATCGTGAAAAATAGAAAATGTGTTGTCTCGCCATGAAACTTCACATGAAGGCTTA
64 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* *
16978609 AGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCAAGGCTGAAATATGAAGATGT
129 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGT
*
16978674 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCATAG
194 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAG
* * * * * *
16978739 TGCTCGCCCGTCCGCTCGATTCGTCGTTTGGCTTAGGGATATGGAGTTCATTCCTAGTCTAAGAT
259 TGCCCGTCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * * *
16978804 CAGATCAGACTGAAGGTTGCGCCTGTAGGATTGGCAGCACGTAAAGAGGGACCCAACCGATCAAT
324 CAGATCAGACTGAAGGTTGCGGC-GCAGGATCGGCAGCA-GCAAAGAGGGA--C--CCG--C-A-
* *
16978869 GGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA--CTT
379 --CCT-CGCAT--C-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCTT
* * * * *
16978932 ATGCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCGTTCCCAGTCTAAGATCGAACCGG
438 AAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGG
*
16978997 ACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTG-TCAGTGCCGTATTTTTCTTCACCG
503 ACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCT-GGTGCCGTATTTTTCTTCACCG
* * * *
16979061 GGACACCATTACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GGCACTCAGGGGAGCCGGGGG
567 GGACACGATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGG-A-TCGGGGGGGCCGGGGG
* *
16979125 AGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTA-ATTGGCCCTCTA-CCCTCA
630 -GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16979188 TCAAACCTCGAGAATTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
694 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
16979253 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
759 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-ACA---C----
16979318 TTTTTGCTGAA
816 ----TGC-G-A
16979329 TTTTTTTGTGCATGCCAACAAGAATACAAGGATCGCGTCTACCAAGCTTGGGGCCAAAACTCCTT
1 --------T-C-T----AC-------C-A--A----G--T-------TTGGGGCCAAAACTCCTT
* * * * ** * *
16979394 CTGAAACAA--TTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATG
29 CTGAAAAAATGTTTAAAAAGTCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* *
16979457 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCAGA
94 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAA
* *** * * *
16979522 AAAATGGCGTTGGCTTCGTAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCC
159 AAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
16979587 ACGGCTTGCGCATCTCGCCTC-CTTGGCCGACGTAGTGCCCGTCGGCATGTCCGCTCGTTTTGTC
224 ACGGCTTGCGCATCCCGCCTCTC-TGGCTGGCGTAGTGCCCGTC--C--GCCCGCTCGATTCGTC
**
16979651 GGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATC
284 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
16979692 GGACCGGACT
Statistics
Matches: 1734, Mismatches: 205, Indels: 259
0.79 0.09 0.12
Matches are distributed among these distances:
814 5 0.00
815 235 0.14
816 8 0.00
817 2 0.00
818 5 0.00
819 81 0.05
820 1 0.00
823 1 0.00
830 1 0.00
831 3 0.00
832 147 0.08
833 12 0.01
834 2 0.00
836 1 0.00
838 39 0.02
840 6 0.00
841 164 0.09
846 1 0.00
849 4 0.00
850 1 0.00
851 1 0.00
853 1 0.00
855 2 0.00
856 1 0.00
857 1 0.00
858 3 0.00
861 3 0.00
865 3 0.00
868 2 0.00
869 3 0.00
871 2 0.00
873 1 0.00
874 1 0.00
875 4 0.00
877 1 0.00
878 1 0.00
882 1 0.00
883 311 0.18
884 38 0.02
885 45 0.03
887 50 0.03
889 2 0.00
890 11 0.01
891 272 0.16
892 7 0.00
893 2 0.00
894 11 0.01
895 230 0.13
896 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (820 bp):
TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAAGTCCTGAACCATAAAAAG
TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTG
CCCGTCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
GATCAGACTGAAGGTTGCGGCGCAGGATCGGCAGCAGCAAAGAGGGACCCGCACCTCGCATCCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCTTAAGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCAGCAGC
ACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACGATTGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCAGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGACACTGCGA
Found at i:16978079 original size:26 final size:26
Alignment explanation
Indices: 16978043--16978095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978033 GTTGACTTTG
16978043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16978069 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16978095 G
1 G
16978096 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16978971 original size:26 final size:26
Alignment explanation
Indices: 16978935--16978985 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978925 TTGACTTATG
*
16978935 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
*
16978961 CATACGAAGTTCGTTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
16978986 GATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:16979570 original size:883 final size:886
Alignment explanation
Indices: 16977588--16979696 Score: 2900
Period size: 883 Copynumber: 2.4 Consensus size: 886
16977578 CTTGCACGCA
* * * *
16977588 CTACCACGTTTGGGGCCAAAACTCCTTCTGAAAAAATGTTTAAAAATCCTGAACCATAAAGAGTT
1 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT-TTAAAAAATCCTGAACCGTAAAAAGTT
* * *
16977653 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGCTTAAGGG
65 TTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * * *
16977718 ACCATTTTATGATTTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
130 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCT
* * *
16977783 AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCCTTGCTCGACGTAGTGCC
195 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCCTGGCT-GACGTAGTGCT
16977848 CGTCCGCATGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGAT
259 CG-CC-C--GTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGAT
* * * ** ** **
16977913 CGGACCAAACCGAGGGTTGAGGCGACAGGATCGACAGCACATATTGGGGTACCCGGTCCATCCCC
320 CAGACCAAACCGAAGGTTGAGCCGACAGGATCGACAGCACATAAAGGGGTACCCGAACCATCAAC
* * *
16977978 GGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACCCTCGTTTGGTGGGTTGACTTTG
385 GGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTTG
* * *
16978043 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGAC
450 GCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* *
16978108 CGAGGGTTACGGCAGCACAGGCTGGCCTTGGGCATGTACTGGTGCCACATTTTTCTTCACCGGGA
515 CGAGGGTTACAGCAGCACAGGCTGGCCTTGGGCATGTACTAGTGCCACATTTTTCTTCACCGGGA
* *** * *
16978173 CAGCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCTGGGGGGGCCGGGGGGTG
580 CACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCTAGGGGAGCC---GGGTG
*
16978238 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCT
642 GGAGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCT
* *
16978303 TATCAAACCTGAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
707 CATCAAACCTGAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
* * * *
16978368 GGTCATTAATGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
772 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
16978433 TTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGT
837 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * *
16978483 CTACCAAGTTTGATGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
1 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAATCCTGAACCGTAAAAAGTT
* * *
16978548 TTAAAAATCGTGAAAAATAGAAAATGTGTTGTCTCGCCATGAAACTTCACATGAAGGCTTAAGGG
65 TTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
*
16978613 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCAAGGCT-GAAATATGAAGATGTGCC
130 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGG-TAGAAATATGAAGATGTGCC
* *
16978677 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCATAGTGC
194 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC-CTGGCTGACGTAGTGC
* * * * ***
16978742 TCGCCCGTCCGCTCGATTCGTCGTTTGGCTTAGGGATATGGAGTTCATTCCTAGTCTAAGATCAG
258 TCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCAG
* * * * * * * * *
16978807 ATCAGACTGAAGGTTGCGCCTG-TAGGATTGGCAGCACGTAAAGAGGG-ACCC-AACCGATCAAT
323 ACCAAACCGAAGGTTGAGCC-GACAGGATCGACAGCACATAAAG-GGGTACCCGAACC-ATCAAC
*
16978869 GGCTTACGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
385 GGCTTACGCATCCCGCCCCTCTGGTC-GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTT-
*
16978933 T-GCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCGTTCCCAGTCTAAGATC-GAACCG
448 TGGCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCG
* * * * **
16978996 GACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGT-GTCAGTGCCGTATTTTTCTTCACC
512 GACCGAGGGTTACAGCAGCACAGGCTGGCCTTGGGCATGTACT-AGTGCCACATTTTTCTTCACC
* **
16979060 GGGACACCATTACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGC-A-CTCAGGGGAGCC-GG
576 GGGACACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCT-AGGGGAGCCGGG
* *
16979122 -GGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTA-ATTGGC-CCTCTA-C
640 TGGGAGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACC-CTATC
* * *
16979183 CCTCATCAAACCTCG-AGAATTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
704 CCTCATCAAACCT-GAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
16979247 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
768 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
16979312 TCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCGCGT
833 TCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
16979367 CTACCAAGCTTGGGGCCAAAACTCCTTCTGAAACAATTTAAAAAATCCTAAACCGTAAAAAGTTT
1 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAATCCTGAACCGTAAAAAGTTT
* *
16979432 CAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
66 TAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* * * * * *
16979497 CCATTGTATGAATTAACAAGCCAGAAAAATGGCGTTGGCTTCGTAAAAATATGAAGATATGCCTA
131 CCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
* *
16979562 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCCTTGGCCGACGTAGTGCCC
196 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCC-TGGCTGACGTAGTG--C
**
16979627 GTCGGCATGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATC
258 -TC-GCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATC
*
16979692 GGACC
321 AGACC
16979697 GGACTGAGGT
Statistics
Matches: 1070, Mismatches: 124, Indels: 48
0.86 0.10 0.04
Matches are distributed among these distances:
882 2 0.00
883 324 0.30
884 87 0.08
885 46 0.04
886 4 0.00
887 55 0.05
889 2 0.00
890 13 0.01
891 294 0.27
892 5 0.00
893 1 0.00
894 2 0.00
895 229 0.21
896 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (886 bp):
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAATCCTGAACCGTAAAAAGTTT
TAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCCTGGCTGACGTAGTGCTCG
CCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCAGACC
AAACCGAAGGTTGAGCCGACAGGATCGACAGCACATAAAGGGGTACCCGAACCATCAACGGCTTA
CGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTTGGCATAC
GGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTACAGCAGCACAGGCTGGCCTTGGGCATGTACTAGTGCCACATTTTTCTTCACCGGGACACCAT
CACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCTAGGGGAGCCGGGTGGGAGTGTGC
ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACC
TGAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
Found at i:16979880 original size:159 final size:159
Alignment explanation
Indices: 16979637--16980006 Score: 465
Period size: 159 Copynumber: 2.3 Consensus size: 159
16979627 GTCGGCATGT
* * *
16979637 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACCGGACT
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACT
* * * * *
16979702 GAGGTTTACGACAGTAGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTACAT
66 GAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTACAT
* *
16979767 CCCG-CCTCTCTGGTCGGC-GTAGTGCCCGC
131 CCCGTCC-CTCTGGCCGGCTG-AGCGCCCGC
* * * * * * * *
16979796 CCGCTCATTTCGTCGGTTGGCTAAAGCATACGGACTTCATTCCCAGTCTAAGATTGGACTGGTCT
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACT
* * ***
16979861 GAGGGTTGCGATAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGTGT
66 GAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTACAT
16979926 CCCGTCCCTCTGGCCGGCTGAGCGCCCGC
131 CCCGTCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
16979955 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAG
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
16980007 CATATGGAGT
Statistics
Matches: 177, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
159 174 0.98
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACT
GAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTACAT
CCCGTCCCTCTGGCCGGCTGAGCGCCCGC
Found at i:16981513 original size:889 final size:884
Alignment explanation
Indices: 16979789--16981770 Score: 2783
Period size: 889 Copynumber: 2.2 Consensus size: 884
16979779 GTCGGCGTAG
* * * *
16979789 TGCCCGCCCGCTCATTTCGTCGGTTGGCTAAAGCATACGGACTTCATTCCCAGTCTAAGATTGGA
1 TGCCCGCCCGCTCGTTTCGTCGGTTGGCT-TAGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
* * ** * *
16979854 CTGGTCTGAGGGTTGCGATAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
65 CTGATC-GAGGGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGACCGATCCCCGACT
** * *
16979919 TGTGTGTCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
128 TGTGCATCCCG-CCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCAT
* * *
16979984 ACGAAGTTCATTCCCTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAG
192 ACG-AGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * *
16980049 GGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGACACC
256 GGCTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGACACC
* *
16980114 ATCGCCAGAGAACCTGACCTGCGCCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGAATGCAC
321 ATCGCCAGAGAACCTGACCGGCGCCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGAATGCAC
16980179 ACATGATATGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTC
386 ACATGATATGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16980244 AAGAACTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
451 AAGAACTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
16980309 TGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
516 TGCCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
16980374 AATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGATTGGGGTGAAAACTCC
581 AATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGATTGGGGTCAAAACTCC
* * *
16980439 TTCAAAAAAAATTTTCAAAAATCCCAAACCTTAAAATGTTTCGAAAATCATGAAAAATAGAAAAC
646 TTCAAAAAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * *
16980504 GAGTCGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAA
711 AAGTCGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAA
* * * *
16980569 AAAAATGGCACTGGCATGATAGAAATATGAAGATATACCTAAGCCCACCTACCACCCTATCGATC
776 AAAAATGGCACTGGCATGACAAAAATATGAAGATATACCTAAACCCACCTACCACCCTATCAATC
* * * *
16980634 CACGGCTTGCGCATCCCGCCT-TTCTGGCCGGCGTAGTGCCCGCC
841 CACAGCTTGCACATCCCACCTCTT-TGGCCGACGTAGTGCCCGCC
* *
16980678 TGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG-CATACGGAGTTCATTCCCAGTCTAAGATTAGA
* * * * * *
16980743 CTGCATCGAGGGTTACGACAGTAGGATCGGCAGCACGCAGAGGAGGACTCGGCCGATCCCTGATT
65 CTG-ATCGAGGGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGAC-CGACCGATCCCCGACT
**
16980808 TGTGCATCCCGCCACTCTGGCCGACTGAGCGCTTGCACGTTCGTTTCGTGGGTTGACTTAGGCAT
128 TGTGCATCCCGCC-CTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCAT
* *
16980873 ACAGAGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
192 AC-GAGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* ***
16980938 GGCTGC-GACAGCACATGCTAGGCTTGGGCATGTGCTGGTTTTGCATTTTTCTTCATCGAGACAC
256 GGCTGCAG-CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGACAC
* * * ** ** * * **
16981002 CATCG-TAGGAGAACCTGATCGGCGGCATTAGGGTTTTGGTGATCGGGGGGGTCGGGGGGTGTGC
320 CATCGCCA-GAGAACCTGACCGGCGCCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGAATGC
* * * * *
16981066 GCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
384 ACACATGATATGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACC
* ** * *
16981131 TCGAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
449 TCAAGAACTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** *
16981196 AGTGTTTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
514 AGTGCCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
16981261 TGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTTCCAAG-TCTGGGG-CAAAAC
579 TGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGAT-TGGGGTCAAAAC
** ** *
16981324 TCCTTCTGAAAAAATTTT-AAAAACTCCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
643 TCCTTCAAAAAAAATTTTCAAAAA-TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
16981388 AAACAAGTCGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
707 AAACAAGTCGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * * *
16981453 CCAGAAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACTCACTTACCACCCTAT
772 CCA-AAAAAATGGCACTGGCATGACAAAAATATGAAGATATACCTAAACCCACCTACCACCCTAT
* *
16981518 CAATCTATAGCTTGCACATCCCACCTCTTTGGCCGACGTAGTGCCCGCC
836 CAATCCACAGCTTGCACATCCCACCTCTTTGGCCGACGTAGTGCCCGCC
*
16981567 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGA
1 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATTAGA
* * *
16981632 TCGGATCGAGGGTTACGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCTGACCGATCCCCGACT
65 -CTGATCGAGGGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGACC-GACCGATCCCCGACT
** * *
16981697 TGCACATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTT-GTTTCGTGGGTTGA-TTGAGGC
128 TGTGCATCCCG-CCCTCTGGCCGACTGAGCGCCCGCACG-TTCGTTTCGTGGGTTGACTT-AGGC
16981760 ATACGGAGTTC
190 ATAC-GAGTTC
16981771 TTCGTCGGGA
Statistics
Matches: 963, Mismatches: 113, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
887 5 0.01
888 131 0.14
889 815 0.85
890 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC
TGATCGAGGGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGACCGACCGATCCCCGACTTGT
GCATCCCGCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGA
GTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTG
CAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGACACCATCGC
CAGAGAACCTGACCGGCGCCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGAATGCACACATG
ATATGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
CTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCT
AAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGATTGGGGTCAAAACTCCTTCAA
AAAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
GTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAA
TGGCACTGGCATGACAAAAATATGAAGATATACCTAAACCCACCTACCACCCTATCAATCCACAG
CTTGCACATCCCACCTCTTTGGCCGACGTAGTGCCCGCC
Found at i:16982572 original size:190 final size:190
Alignment explanation
Indices: 16982249--16982600 Score: 537
Period size: 190 Copynumber: 1.9 Consensus size: 190
16982239 GAAAAATGGC
* *
16982249 ATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACTGCTTG
1 ATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCTTG
* * * * *
16982314 CGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTT
66 CGCATCCCGCCTCTCTCGCAGGCGTAGTGCCCACCCGCCCGCCCGCTCGATTCGTCGGTTGGCTT
*
16982379 AGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGATCGGACCTAGGGTTGCGATAGCAGA
131 AGGCATACGAAGTTCATTCCCTA-TCTAAGATCGGATCGGACCTAGGGTTGCGATAGCAGA
* *
16982439 ATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CAATGGCTT
1 ATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAT-GCTT
* * * * *
16982503 GCGCATCCCGCCTCTCTCGTAGGCGTAGTGCCCGCTCGCCCGTCCGTTCGATTCGTCGGTTGGCT
65 GCGCATCCCGCCTCTCTCGCAGGCGTAGTGCCCACCCGCCCGCCCGCTCGATTCGTCGGTTGGCT
16982568 TAGGCATACGAAGTTCATTCCCTATCTAAGATC
130 TAGGCATACGAAGTTCATTCCCTATCTAAGATC
16982601 AGACTGAATC
Statistics
Matches: 145, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
189 3 0.02
190 141 0.97
191 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.25
Consensus pattern (190 bp):
ATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCTTG
CGCATCCCGCCTCTCTCGCAGGCGTAGTGCCCACCCGCCCGCCCGCTCGATTCGTCGGTTGGCTT
AGGCATACGAAGTTCATTCCCTATCTAAGATCGGATCGGACCTAGGGTTGCGATAGCAGA
Found at i:16983639 original size:190 final size:190
Alignment explanation
Indices: 16983311--16983653 Score: 560
Period size: 190 Copynumber: 1.8 Consensus size: 190
16983301 GCATTGGCAT
* * *
16983311 GGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCC
1 GGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
16983376 GCCTCTCTGGCCGGCGTAGTGCCCACCCGTCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATAC
66 GCCTCTCAGGCCAGCGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATAC
*
16983441 GGAGTTCATTCCCAGACTAAGATTAGACCGAACCGAGGGTTGCGGTAGCAGAATTGGTAG
131 GAAGTTCATTCCCAGACTAAGATTAGACCGAACCGAGGGTTGCGGTAGCAGAATTGGTAG
*
16983501 GGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGCATCCC
1 GGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
16983566 GCCTCTCAGGCCAGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCTGTTGGCTTAGGCATAC
66 GCCTCTCAGGCCAGCGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATAC
*
16983631 GAAGTTCATTCCCAGTCTAAGAT
131 GAAGTTCATTCCCAGACTAAGAT
16983654 CAAACCAAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
190 139 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (190 bp):
GGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GCCTCTCAGGCCAGCGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATAC
GAAGTTCATTCCCAGACTAAGATTAGACCGAACCGAGGGTTGCGGTAGCAGAATTGGTAG
Found at i:16983822 original size:26 final size:26
Alignment explanation
Indices: 16983784--16983836 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16983774 GTTGACTTAG
16983784 GCATACGATGTTCATTCCCAGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
16983810 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
16983836 G
1 G
16983837 ATTGGAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:16984700 original size:26 final size:26
Alignment explanation
Indices: 16984670--16984720 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16984660 TTGACTTAGG
* * *
16984670 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGAACTTCATTCCCAATCTAAT
16984696 CATACGAACTTCATTCCCAATCTAA
1 CATACGAACTTCATTCCCAATCTAA
16984721 GTTTGGAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.29
Consensus pattern (26 bp):
CATACGAACTTCATTCCCAATCTAAT
Found at i:16985299 original size:885 final size:883
Alignment explanation
Indices: 16983501--16986438 Score: 4113
Period size: 885 Copynumber: 3.3 Consensus size: 883
16983491 GAATTGGTAG
* *
16983501 GGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGCATCCC
1 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
16983566 GCCTCTCAGGCCAGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCTG-TTGGCTTAGGCATA
66 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CTCGTTTCATC-GATTGGCTTAGGCATA
* * * * * *
16983630 CGAAGTTCATTCCCAGTCTAAGATCAAACCA-AACCAATGGTTACGGTAGCCA-GATCGGCAGCA
126 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-CGAGGGTTGCGATAG-CAGGATCGGCAGCA
* * * * * * * * *
16983693 CGCAAAAGGGGACCTGACCGATCCCCAGCTTGCGTATACCACCTCTTTGGTCGGTTGAGCGCCCA
189 CGCAGAAGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
*
16983758 CACGCTCATTTCGTGGGTTGACTTAGGCATAC-GATGTTCATTCCCAGTCTAAGCATACGGAGTT
254 CACGCTCATTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
16983822 CATTCCCAGTCTAAGATTGGAGTGGACCGATGGTTGCGGTAGCACATACTGGCCTCGGGCATGTG
318 CATTCCCAGTCTAAGATTGGAGTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
16983887 CTGGTGCCGCATTGTTT-TTCATCGGGACACCATTGTCGGAGAACCTGATCGACGGCATTGGGGC
383 CTGGTGTCGCATT-TTTCTTCGTCGGGACACCATTGTCAGAGAACCTGACCGACGGCATTGGGG-
* * * *
16983951 TTCGACGATTGGGGTGGCCGGGGGGGTGTGCGCCCATGATGTGCAATGGGTGCTGGTACTTGGCC
446 TTCGGCGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
16984016 CTTATATTGGGCCCCTATCCCTTATCAAACCTCGGGAACTCACA-CCCCTTAAAGAGCATTTGAG
510 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
16984080 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAGACTTTTTTCAAATGGT
575 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
16984145 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAAGCCTACAAAAATACAAG
640 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTACAAAAATACAAG
* * * * *
16984210 GATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCTGAAAAAATTTAAAAAAATCTGGAACCAT
705 GATCACGTCTACC-AGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGT
*
16984275 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
769 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
16984340 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
834 CTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAT
*
16984390 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCC
1 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
16984455 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGGATACGGAG
66 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
* * * * *
16984520 TTCATTCCCTGTCTAAGATCAGACCAGAATGAGGGTTGCGATAGTAGGATCGGTAGCACACAGAA
131 TTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAA
* ** *
16984585 GGGGACCCGACCGA-CCCTCGGCTTGCGCATCCCGCCGTTCTGGCCGGCTGAGCGCCCACACACT
196 GGGGACCCGACCGATCCC-CAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCT
* * * *
16984649 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCATACGAACTTCATTCCC
260 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
16984714 AATCTAAGTTTGGAGTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
325 AGTCTAAGATTGGAGTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * * *
16984779 AGTATTTTTCTTCG-CTGGGACACCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
390 CGCATTTTTCTTCGTC-GGGACACCATTGTCAGAGAACCTGACCGACGGCATTGGGGTT-CGGCG
* * * *
16984843 ATCGGGGGGGCCAGGGGGTTTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
453 ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
16984908 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACA
518 GGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
**
16984973 GGTTTTTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
583 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
16985038 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTATAAAAATACAAGGATCACAT
648 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTACAAAAATACAAGGATCACGT
* * *
16985103 CTACCGAGTTTGGGGCCAAAAATATTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
713 CTACC-AGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* * * *
16985168 TCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACTTGAAGGTTTAAGGG
777 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* *
16985233 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTAGCAT
842 ACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAT
* * * *
16985275 GGCAGAAATATGAGGATGTGCCTAAACCAACCTACCATCCTATCGATCCACGGCTTGCGCATCCC
1 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
16985340 GCCTTTATGGCCTGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAG
66 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
* ** * *
16985405 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGGTAGCACGCAGGA
131 TTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGCAGGATCGGCAGCACGCA-GA
* ** * * * *
16985470 GGGGGACCCGGTCGATCCCC-GACTTACGCATCCCGCCCCTATGGCTGGCTGAGTGCCCGA-ACG
195 AGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-ACACG
*
16985533 CTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
258 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16985598 CCAGTCTAAGATCGGACCT-GACCAAGGGTTTCAGCAGCACAAGCTGGGCTCGGGCATGTACTGG
323 CCAGTCTAAGATTGGA-GTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
16985662 TGTCGCATTTTTCTTCGTCGGGAGACCATTGTCAGTGAACCTGACCGACGGCATTGGGGTTTCGG
387 TGTCGCATTTTTCTTCGTCGGGACACCATTGTCAGAGAACCTGACCGACGGCATTGGGG-TTCGG
*
16985727 CGATTGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
451 CGATTGGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
16985792 TATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCGCTTAAAGAGCATTTGAGATTT
514 TATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* ** *
16985857 TACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGGGATGGGGATAC-TTTTTCAAATGGTCACA
579 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
16985921 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTACAAAAATACAAGGATC
644 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTACAAAAATACAAGGATC
* * * * *
16985986 ACGTCTACCAGGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCTTGAACAGCAAAA
709 ACGTCTACCA-GTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
* * *
16986051 AATTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTA
773 AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
16986116 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAT
838 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAT
* *
16986162 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCC
1 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
16986227 GCCTCTCTCGTCGGCGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTC-AGTTGGCTTAGGCATA
66 GCCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCTCGTTTCATCGA-TTGGCTTAGGCATA
* * * * *
16986291 CGGAGTTCATTCCCAGTCTAAGATCCGACC-GGACTGAGGGTTGCTATAGCAGGATTGGCAACAC
126 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAC-GAGGGTTGCGATAGCAGGATCGGCAGCAC
* * * * * * * * **
16986355 GCAGAGGGGGACCCAATCGATCCCCAGCTTGTGCATCACGCCCCTCTGGCTGACTGAGTGCCTGC
190 GCAGAAGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCAC
*
16986420 ACGCTCGTTTCATGGGTTG
255 ACGCTCATTTCATGGGTTG
16986439 CCCGCATTTT
Statistics
Matches: 1823, Mismatches: 199, Indels: 53
0.88 0.10 0.03
Matches are distributed among these distances:
884 92 0.05
885 774 0.42
886 230 0.13
887 328 0.18
888 148 0.08
889 93 0.05
890 69 0.04
891 89 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAA
GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTC
ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATTGGAGTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
GCATTTTTCTTCGTCGGGACACCATTGTCAGAGAACCTGACCGACGGCATTGGGGTTCGGCGATT
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCTACAAAAATACAAGGATCACGTCTA
CCAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCAT
Found at i:16985591 original size:26 final size:26
Alignment explanation
Indices: 16985555--16985607 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16985545 GTTGACTTAG
16985555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16985581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16985607 G
1 G
16985608 ATCGGACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16986078 original size:27 final size:27
Alignment explanation
Indices: 16986020--16986071 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
16986010 AGTCCTTCTG
* * *
16986020 AAAAAATTTTAAAAAATCTTGAACAGC
1 AAAAAATTTTAAAAAATCGTGAAAAAC
16986047 AAAAAATTTT-AAAAATCGTGAAAAA
1 AAAAAATTTTAAAAAATCGTGAAAAA
16986072 TAGAAAACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.25
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCGTGAAAAAC
Found at i:16988558 original size:888 final size:888
Alignment explanation
Indices: 16986440--16999215 Score: 11962
Period size: 888 Copynumber: 14.3 Consensus size: 888
16986430 CATGGGTTGC
* * * * * *
16986440 CCGCATTTTTCTTCG-CTGAGACACCATCGCCGGAGAACCTGATCGGCAGCATTGTGGTTCCGAC
1 CCGCATTTTTCTTCGTC-GGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGAC
* *
16986504 GATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
65 GATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
16986569 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACATCACACCCCCTTAACAGAGCATTTGAGATTT
129 TTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTTAA-AGAGCATTTGAGATTT
* * *
16986634 TACAGG-TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTATCAAATGGTCAC-
192 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
16986697 AAATCTTGTACACTTCCCGA-TTTTTAGCTCGAATTTTTGTG-GCATACCAACATAAAACACAAG
257 AAATCTTGTACACTT--CGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACA-AAAATACAAG
* * * *
16986760 GATC-C-TCTTGCCAAG-TTCGGGTCAAAACTCCTTCTGACAAAA-TTTAAAAAAT-CTCGAACC
318 GATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACC
*
16986820 GT-AAAAG-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
381 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
* *
16986883 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGTATTGGCATGGCAGAGATATGA
446 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGA
* * * *
16986948 AGATGTGCCTAAATCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCCCGCCTCTCTGGCTG
511 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * *
16987013 ACGTAGTGCCCG--C-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
576 GCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * *** * * *
16987075 GTCTAAGATGGGATCGGACCGAGGGTTATGGCAGCAGGATTGGCAGCACGCAGAGAGGGACCCGA
641 GTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * *
16987140 CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGACAGGCTGAACGCCCGCA----CGTTTCGTGGG
706 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
16987201 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGT-TGAAAAT
771 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGAT
* *
16987265 CGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
835 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
16987319 CCACTTTTTTCTTCGTTGGGACACCATCACCGGAGAACCTGACCGACGGCATTGGGGTT-TCAGC
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGA-C
* * *
16987383 GATCGTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGATACTTGACCCTTA
65 GATCG-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
16987448 TATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
127 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
16987513 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
192 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
16987578 AAATCTTGTACACTTTGAGTTTTTAGCCGAATGTTTTTGTGCATGCCCAA-AAAATTAC-AGCGA
257 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAG-GA
* * **
16987641 TCATGTCTACCAAGTTTAGGGTGAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAA
320 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAA
** * * *
16987706 AAAGTTTTGAAAATCTTGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTTCACATGAAGGCT
385 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
16987771 TAAGGGACCATTGTATGAATTTAGAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
450 TAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
*
16987836 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-CCTCTCTGGCCGGTGT
515 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* * *
16987900 AGTGCCCGCCTGCTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTC
580 AGTGCCCGCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * ** **
16987965 TAAGGTCAAACCGGGCTGAGGGTTACAGCAGCAGGATCGGCAGCGCATAGAGGGGGACTTGGCCG
644 TAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCG
** * * * * * *
16988030 ATCCCCGGCTTGCATATCCCGCCCCTCTGGCCGACTGAGCACCTGTACGCTCATTTTGTGGGTTG
709 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * *
16988095 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTCATTCCCAATCGAACATCGGA
774 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
16988160 CTGGACCGAGGGTTGTGGAAG-AAATTGCTGGGCTCGGGCATGTGTTGGTG
839 CCGGACCGAGGGTTGCGGCAGCACA-TGCTGGGCTCGGGCATGTGCTGGTG
* * *
16988210 CCGTATTTTTCTTC-TCCGGGACACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGAC
1 CCGCATTTTTCTTCGT-CGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGAC
* * *
16988274 GATCGCGGGGGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-T
65 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * * *
16988338 ATGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACTCGCTTAAAGGGCTTTTGAGATTTTA
130 -TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
16988403 CAGGTTTACTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGTTCACAAA
194 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16988468 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
259 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
16988533 GTCTACCAAGTTTGGGCCCAAAACTCCTTGTGAACAAATTTTAAAAAATCCTAAACCATAAAAAG
324 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
* * * * * *
16988598 TTTCGAAAATCTTAAAAAATAGAAAATGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAA
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* * ** *
16988663 GGACCATTATATGAATTTACAAGCCAAAAAAATGGCATTGGCACAGTAGAAATATGAAGATGTGC
454 GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* ** * * ** **** **** *
16988728 CTAAACCAAGTTTGAGGCCAAAACTCCTTTTGA-AAAAATTTTAAAAAATCCGGAACCATAAAAA
519 CTAAACCCA-CCT-A--CC---AC-CCTATCGATCCACGGCTT-GCGCATCCCG--CC-------
* **** ** **** ** * ** * * * **
16988792 GTTTCAAAAAATCGTGAAAAATA-TAAAAAG-GAGTCGTCTTGC-CATGAAACTTC-ACATGAAG
566 -TCTC---TGGCCG-G---CGTAGT-GCCCGCCCGCCG-CCCGCTC--G---TTTCGTC-GGTTG
* * ** * * * ** * * ** * *
16988853 GCTTAAGGGACCAT-TGTA-TGAATTTACAAG--TAAGA--AAAATGGCATCGGCACGGCAGAAA
615 GCTT-A-GG--CATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGG-A-CCG-AGGGTTGCAG
* * * * *** ** *** * * * * *
16988912 TATG-AAGAT-GTGCCTA-AACTCA-CCTGCCACCCTATCGATCCACAGCTTACGCATCCGGCCT
672 CA-GCAGGATCG-G-C-AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * **
16988973 CTCTGGCCGGC-GTAGTGCCCGCCCGATCGATCCTTGTCTTGCGCATCCTGCCCCACTGGCCGAC
733 CTCTGGCCGGCTG-AGCGCCCG--C-A-CG---CTCGT-TT-CG-----TG-------GGTTGAC
* * * * * *
16989037 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCT
776 TTA--G---GCA-------TACG-GAGTTCA-TT---C---C-C-----------AGTCTAAGCA
* * * * *
16989102 TACGTAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCGCATGCTGGGCTC
809 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
16989167 AGGCATGTGCTGGTG
874 GGGCATGTGCTGGTG
* * * *
16989182 CCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* * *
16989247 ATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATAT
66 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16989312 TGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGTGATTTTAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
16989377 AGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
16989442 TCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCTTGCCAACAAAAATACAAGGATCACG
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
16989507 TCTACCAAGTTTGGGTCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAG
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAG
* * *
16989571 TTTCAAAAATCGTGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACATGAAGACTTAAG
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* * *
16989636 GGACCATTGTATTAATTTACAAGCCAAAAAAATGGGATTGGCATGGCAGAAATATGAAGATGTGC
454 GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* * * * * * *
16989701 CTAAACCGACCTACCACCCTATCGATCCACGGCTTGTGCATCCCACCTTTCTGGTCGACGTAGCG
519 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * * *
16989766 CCCGCACGCCCGCCCGCTCGTTTCATCGGATGGCTTAGGCATACGGAGTTCATTACCAGTCTAAG
584 CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** ** * * * * * *
16989831 ATCGGATTGGAGTGAGGGTTACAGCAGTAGGATCCGCAGCATGTAGAGGGGGACCCGGTCGATCC
648 ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCC
* * * * * *
16989896 CCGACTTGCGCATCCCGCCCATCTAGCCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTT
713 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * * *
16989961 AGGCATACGAAGATCATTCCCTGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAG
778 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
*
16990026 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
843 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
16990072 CCACATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTCCGGCT
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* * * * *
16990136 ATCGAGGGGGCCGAGGGGTGTACACGCACATGATGTGCGATGGGTGCTGGTGCTTCGCCCTTATA
66 ATCGGGGGGGCCGGGGGGTGT--GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
16990201 TTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
129 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
16990266 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAAGAGGACACTTTTTTCAAATGGTCACAAA
194 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16990331 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
259 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * ** *
16990396 ATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCAAACCATAAAAAG
324 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
** * *
16990461 TTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTATG
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
*
16990526 GGACCATT-TAATGAATTTACAAGCCAGAAAAATGGAATTGGCATGGCAGAAATATGAAGATGTG
454 GGACCATTGT-ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * *
16990590 CCTAAACCCACCTACTACCCTATCGATCCTCGGCTTACGCATCCCGCCTCTCTGGCCGGCGTAGT
518 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * * * ** *
16990655 GTCCACCCACCCACCCGCTCATTTCGTTAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
583 GCCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * **
16990720 GATTAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGATTCGGCCGATC
647 GATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * * * * *
16990785 CTCGACGTGCGCATCCCGCACCTCTGGCCGGCTGAGCGACTGCACACTCGTTTCGTGGGTTGAC-
712 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
16990849 T-----TA--G-G--CA-T---A---T-----T---GAGTTCATTCCCAGTCTAAGATCGGACCG
777 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
*
16990889 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
842 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
16990936 CCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGTCGGTATTGGGGTTCCGACG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* *
16991001 ATCGGGGGGGGCCGTGGGGGTTGTGTGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTAT
66 ATC-GGGGGGGCCG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
16991066 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTT
128 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
16991131 ACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAA
193 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
16991196 AATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCA
258 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* ** *
16991261 CGTCTACCAAGTTTAGGGCCAAAACTCCACCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAT
323 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
* * * *
16991326 GTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTTACATGAAGGCTTAA
388 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * *
16991391 GGGACCGTTGTATGAATTTAGAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTG
453 GGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * *
16991456 CCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCGCCTCTCTGGCCGGCATAGT
518 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * * *
16991521 GCCCGCCCGTCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCTTTCCCTGTCTAA
583 GCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
16991586 GATCAGACCGGACCGAGGGTTGCAGCAGCAGGATTGATAGCACGCAGAGGGGGACCTGGCCGATC
647 GATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * *
16991651 CCCGGCTTGCGCATCCCACCCCTCTGGCCAGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACA
712 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
**
16991716 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTC-GATT
777 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACC
* * *
16991780 GGACCGAGGATTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
841 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * * * *
16991828 CCACATTTTTCTTCGTTGTGACAACGTCGCCAGAGAATCGGACCGACGACATTGGGGTT-TCGAC
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCT-GAC
* * * **
16991892 AATCGGGGGGCCCGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTCATACTTGGCCCTTATAT
65 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16991957 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTGAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
16992022 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
16992087 TCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAAAATACAAGGGTAACG
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* ** * *
16992152 TCCACCAAGTTTGGGGCCAAAAAGCCTTCTGAAAAAATTTTAAACAAT-CTCGAATCGTAAAAAG
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAG
** * *
16992216 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGG
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
16992281 GGACCATTGTATGAATTTAGAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
454 GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* * **
16992346 CTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGCCTCTTTGGCCGGCACAGTG
519 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * * *
16992411 CCCG--C-CTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAAA
584 CCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*** * * * *
16992473 TCAGACCGGACCGAGGGTTATGGTAGAAGGATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCC
649 TCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
** * * * *
16992538 CTACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTA
714 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * *
16992603 GGCATACAGAGTTCATTCCCAGTGTAAG-ATTGGACTGGA-CTGAGGGTTGCGGCAG-C-AGGAT
779 GGCATACGGAGTTCATTCCCAGTCTAAGCA-T--AC-GGAGTTCA---TT-C-CCAGTCTAAGAT
* * * * * * * *
16992664 CAGTAGCTC-G-CAGAGGG-GGACCAGGTCGATC-CATGGCTTGCGCATCCAGCCATTCTGGCCG
835 C-GGA-C-CGGACCGAGGGTTG--C-GG-C-AGCACAT-GC-TGGGC-T-CGGGCA---T-G--T
*
16992725 GCTGAGCG
882 GCTG-GTG
*** * * ** * ** * *
16992733 CCCGCA-CGCTCGTTTCGT-GGTTTGACTTAGGCAT--ACGGAGTTCATTCCCAGTCTAAGCATA
1 -CCGCATTTTTC--TTCGTCGG---GAC--A-CCATCGCCGGAGAACCTGACC-GAC--GGCAT-
* * ** * *** * * * *
16992794 CGGAGTTCATTCCCAGTCTAAGATTGGACCTGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGA
53 TGGGGTTC-TGACGA-TC---GGGGGGGCC-G---G-GGGGTGT-GC-GCACATGATGTG--CGA
* * **** * * * * * **
16992859 -GCATGTGCTGGTGTCGTATTTTTCTTCA-CTGGGACACC-AT-CGTC-GGAGAACCT-GACCG-
104 TG--GGTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTCATCA-AACCTCGA--GA
* ****** ** ** * ******** *
16992917 ACGGCA-TTGGGGTT-CCGA-CGATGGGGGGCCCGGGGGGGTGTG-TGCACA-TGATGTCCGA-T
160 AC-TCACACCCCCTTAAAGAGC-AT-TTGAGATTTTACAGGTTTGCTGC-CAGT-A-G-CC-ATT
* * * ** * *** ** * ** *
16992976 ACACT-TC-GAGTTATTAGCTGA-ATTTTTTTTGTGCATGCGAGAAAAAATACAAG--GA--TC-
217 AAAGTGTCTGA---AAT-GGGGACA-CTTTTTT-CAAATG-GTCACAAAAT-CTTGTACACTTCG
* * * * ** *
16993033 A-TGTTTA-CT-AA---GTTTG-G---GGC--C--AAA-AC-----TC-CTTCTGAAAAAATTT-
274 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTG
*** *** * * * * * *** ** ****
16993076 --TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-GTCTTG
338 GGGCCAAAA-CTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTA-AAAA-GTTTCAAAAAT-
* ** * * * * ** * * *
16993138 CCATGAAACCT--AACATGAAG--G-CTT---AAGAGACCATT-GTATCAA--TTTACA-AG-CC
399 -CGTGAAAAATAGAAAACG-AGTCGTCTTGCCATGA-AAC-TTCACATGAAGGCTTA-AGGGACC
**** * ** * * *** * *
16993190 AAAAAAATGGCATTGGCAAGGCA-AAAATATGAAG-ATGTGCCTAAACCCACCTACCACCCTATC
459 -ATTGTAT-GAATTTACAAGCCAGAAAA-ATG--GCAT-TGGC--ATGGCA--GA--A--ATAT-
* * * *** ** * * * **
16993253 GATCCACGGCATGCG-C--ATCCCGCCT-CTCTTGCTGGCGCAGTGCC-CGCCCGTCCGCCCGCC
509 GA---A--G-ATGTGCCTAAACCCACCTAC-CACCCTATCG-A-T-CCACG-GCTTGCG-CATCC
** ** * **** * * * * * * * *
16993313 CGTTTCGTC-GGTTGGCTTAG-G--CATATG--G--AGTTC-ATTC-CCAG-T--CTAAGATCAA
562 CGCCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG-GCAT
* * * * * * * * * * * *
16993365 AC-CAGATCGAGGGTT-GCGGTAGC-AGGATC-GGCAGCACGCAGAGGG--GTACCCG-ATCGAT
625 ACGGAGTTC-A---TTCCCAGT--CTAAGATCAGACCGGAC-C-GAGGGTTGCAGCAGCA-GGAT
** * * ** * *** * **
16993423 CCCCGGCTTACGC--A-----TCCC-GCCCCTCTAGCCGGC-TAAAC-TCCCGCACGCTCGTTTC
681 CGGCAGC--ACGCAGAGGGGGACCCGGCCGATC--CCCGGCTTGCGCATCCCGC-CCCTC-TGGC
** * **** ** * ***** * *
16993478 ATTTGTTGA-CTTAGGCATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCA-T-----
740 --CGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
16993533 --T-A-C---C--AG----------G-CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
801 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
16993578 CTGGGCTCGGGCATGTGCTGGTG
866 CTGGGCTCGGGCATGTGCTGGTG
* ** * *
16993601 TCGCATTTTTCTTCGTCGGGACACCATCATCGGAGAAGCTGACCGGCGGCATTGGGGTTCT-AGC
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGA-C
* * * *
16993665 GA-CGGGGGGGATCGGGGGGTGTGCGAACATGGTGTGGGATGGGTGCTGGTACTTGGCCCTTATA
65 GATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
16993729 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
129 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
16993794 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
194 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
16993859 ATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCA
259 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
16993924 CGCCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAGAAAATCCTGAACCGCAAAAA
323 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
*
16993989 GTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
388 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
**
16994054 GGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTG
453 GGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * * * *
16994119 CCTAAACCCACCTACCACCCTATCGATCCATGACTTACGTATCCTGCCTCTCTGACCGGCGTAGT
518 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * *
16994184 GCCCGTCTGCCCGTCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGT
583 G-CC--C-GCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
16994249 CTAAGATCAGACCGGACCGAGGGTTGCGGTAACAGGATCGACAGCACGCAGAGAGGGTCCCGGTC
643 CTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC
* * * * *
16994314 GATCCCTGGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCTTGGGTT
708 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
16994379 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGG
773 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * *
16994444 ACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTAGTG
838 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
16994495 CCGCATTTTTCTTCGCCGAGACACCATCGTCTGAGAACCTGACCGACGGTATTGGGGTTCTGACG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
16994560 AT-GGGGGGGACC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
66 ATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
16994623 TGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATATGAGATTTTAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
16994688 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAAGAGGACACTTTTTTCAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
16994753 TCTTGTACAATTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * ** *
16994818 TCTACCAGGTTTGGGGCCAAAACGCCTTCTGAAAAAACTTTAAAAAATCCCAAACCATAAAAAGT
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
** *
16994883 TTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
390 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * *
16994948 GACCATTGTATGAATTTACAAGCCAAAAAAATGGAATTGGCATGGTAGAAATATGAAGATGTGCC
455 GACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* * * * * * *
16995013 TAAACCCACCTACTACCCTATCGATTCTCGGCTTACGCATCCCGCCTTTCTGGCCCGCGTAGTGT
520 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC
* * *
16995078 CCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
585 CCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** ** * * * *
16995143 TTAGACCAAACCGAGGGTTGTGGCAGCAGAATCGGCAGCACGCAGAGGGGGATCCGGCCGAACCT
649 TCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* *
16995208 CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTA
714 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
16995273 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
779 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
*
16995338 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG
844 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
16995383 CCGTATTTTTTTTCGCCGGGACACCATCGTCTGAGAACCTGACCGACGGCATTGGGGTTCTGACG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
*
16995448 AT-GGGGGGGACCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
66 ATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16995512 TGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGC-TTTCGAGATTTTA
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTTA
* *
16995576 CGGGTTTGCTGCCA-TGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAA
194 CAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
16995640 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCATA-AAAAATACAAGGATC
258 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATC
** * *
16995704 AAATCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAA
322 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
*
16995769 AGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT-
387 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* * *
16995833 ATGGACCATTGTATGAATTTACAAACCAGAAAAATGGCATTGGCGTGGCAGAAATATGAAGATGT
452 AGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
** * * *
16995898 GCCTAAACCCACCTACCACCCTATCGATCCACGATTTGCGCATCCCACCTCTCTGGACGGCATAG
517 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * *
16995963 TGCCCGCCCGCCAGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTA
582 TGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * ** *
16996028 AGATCGGATCGAACTGAGGGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGGTTGAC
646 AGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* * * *
16996093 CCCCGACTTGCGCATCCC-CCCCTCTGGTCGGCTGAACGCCCGCACGCTCGCTTCGTGGGTTGAC
711 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
16996157 TTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGCATACGGA
776 TTAGGCATAC-G-G---------AG--T-----T-C--A-TTC---CC-AGTCTAAGCATACGGA
* *
16996222 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACGCATGCTGGGCTCGGGCAT
815 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
16996287 GTGCTGGTA
880 GTGCTGGTG
* * * * * * * *
16996296 TCGCATTTTTCTTTGCCAGGACACCATCGCCGAAGGACCTGACCGGCGGCAATGGGGTT-T--C-
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* * * * *
16996357 A-----GCGACCGTGGAGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
66 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
16996417 GGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
131 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
16996482 AGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGTCA-TTTCTTTCAAATGGTCACAAAA
196 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAA
* * * *
16996546 TCTTGTATACTTAGATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
16996611 TCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAT-CTCGAACCATAAAAAG
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAG
* *
16996675 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTGAG
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* * * *
16996740 GGACCATTGTATTAATTTACAAGCCAGAAAAATGGCATTGGCACGGTAGAATTATGAAGATGTGC
454 GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* *
16996805 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTATTG
519 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * *
16996870 CCCG--C-CCGCCAGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA
584 CCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * * *
16996932 TTAGACCAAACAGAGGGTTGTAGCAGCAGGATCGGTAGCACGTAAAGGGGGACCCGACTGATCCC
649 TCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * * * *
16996997 CGGCTTCCGCATCCCACCCTTATGGCCGGCTGAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTA
714 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
16997062 GGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
779 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
16997127 TCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG
844 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * ** ** *
16997172 CCGCATTTTTCGTCGTCGGGACACGATCGCCGGTGAACCTGACCGGTGGCATTACGGTTCTGGC-
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* * * * * *
16997236 ATTCTGAGGGG-C--TGGGAG-G-G--C--G--G-G-G-T--GTGCTGGTACTTTGCCTTTATAT
66 A-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * * *
16997285 CGGCCCCCTATGCCTCATCAAACCTTGAGAACTCACACCCGCTTAAAAAGCATTTGAGATTTCAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
16997350 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGCCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
** * *
16997415 TCTTGTACGTTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACT
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* **
16997480 TCTACCAAGTTTGGGGCCAAAAATCCTTC-GAAAAAAATTTTAAAAAATCCAAAACCGTAAAAAG
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
** * *
16997544 TTTTGAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
389 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
16997609 GGACCATTGTATGAATTTACAA-CCTAGAAAAATGGCAATGGCATGGCAAAAATATGAAGATGTG
454 GGACCATTGTATGAATTTACAAGCC-AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * **
16997673 CCTAAACCCACCTACTACCCTATCGATCCACCGCTTGCGCATCTCGCCTCTCTGGCCGATGTAGT
518 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
**
16997738 ----G--C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAG
583 GCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * *
16997796 ATCAGATCGAACCGAGGGTTGC-GATAGCAGGATTGGTAGCACGTAGAGGAGGACCCGACCGATC
648 ATCAGACCGGACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * *
16997860 CCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACT
712 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
16997925 TAGGCATACGGAGTTAATTCCAAGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATCAGATCG
777 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
*
16997990 GACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
842 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * ** * *
16998037 CCGTATTTTTCTTCACCGGGACACCATTGCCAAAGAACCTGACCGAAGGCATTGGGGTTCTGGCG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* *
16998102 ATCGGGGGGGCCGGGGGGTATGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
66 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
16998167 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACA
131 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
16998232 TGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATGATCACAAAAT
196 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
16998297 CTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGT
261 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
16998362 CTACCAAGTTTGGGGCCAAAACTACTTCTGACAAAATTTTAAAAAATCAC-AAACCATGAAAAGT
326 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGT
* *
16998426 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
390 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
16998491 GACCATTGTATGAATTTACAAGCCAGAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCC
455 GACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* * * * *
16998556 TAAACCCACCTAGCACCTTACCGATCGACGGCTT-CTGCATCCC-CCTCTCTGGCCGACGTAGTG
520 TAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGCCTCTCTGGCCGGCGTAGTG
* * **
16998619 CCCGCCCGTCCGCCCGCTGGTTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAG
584 CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
16998684 ATC-GAACCAGG-TCAAGGGTTGC-GACAGCAGGATCGGCAGCACGCAGAGAGGGACCC-GCCAA
648 ATCAG-ACC-GGACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* * * *
16998745 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTC-GCTAAGCGCCCGCACGCTCGTTTTGTGTGTCG
710 TCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * **
16998809 ACTTAGGCACATGGAGTTCATTCCTAGTTTAAGCATACATAGTTCATTCCCAGTCTAAGATCGGA
774 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
16998874 TCAGACTGGACCAAGGGTTACAGCAGCACATGCTGGGCTCAGGCATGTGCT--T-
839 -C---C-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * ** *
16998926 -CGCATTTTTCTTCGTCGGGACACCATCGCTAGAGAACCTGATCGGGGGCATTGGGGTTCCGACG
1 CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
* * *
16998990 ATCGGGGGGACCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
66 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
16999055 GGCCCCCTATCCCTCATCAAGCCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
131 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
16999120 GGCTTGCTGCTAGTAGCCATTAAACTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAAT
196 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
16999185 CTTGTACACTTCGAGTTTTTAGCTGAATTTT
261 CTTGTACACTTCGAGTTTTTAGCTGAATTTT
16999216 ACACTTTTTT
Statistics
Matches: 9702, Mismatches: 1619, Indels: 1143
0.78 0.13 0.09
Matches are distributed among these distances:
836 2 0.00
837 7 0.00
838 4 0.00
839 9 0.00
840 6 0.00
841 17 0.00
842 14 0.00
843 27 0.00
844 21 0.00
845 3 0.00
846 1 0.00
847 9 0.00
848 6 0.00
849 9 0.00
850 13 0.00
851 11 0.00
852 6 0.00
853 5 0.00
854 14 0.00
855 1 0.00
856 5 0.00
857 4 0.00
858 6 0.00
859 6 0.00
860 6 0.00
861 10 0.00
862 28 0.00
863 31 0.00
864 168 0.02
865 342 0.04
866 646 0.07
867 38 0.00
868 52 0.01
869 449 0.05
870 16 0.00
871 2 0.00
872 6 0.00
873 1 0.00
874 3 0.00
875 5 0.00
876 132 0.01
877 11 0.00
878 12 0.00
879 105 0.01
880 118 0.01
881 537 0.06
882 34 0.00
883 37 0.00
884 168 0.02
885 188 0.02
886 2 0.00
887 309 0.03
888 1355 0.14
889 833 0.09
890 757 0.08
891 189 0.02
892 432 0.04
893 202 0.02
894 126 0.01
895 10 0.00
896 15 0.00
897 1 0.00
898 5 0.00
899 3 0.00
900 2 0.00
901 114 0.01
902 53 0.01
903 6 0.00
904 344 0.04
905 146 0.02
906 22 0.00
907 16 0.00
908 9 0.00
909 17 0.00
910 37 0.00
911 17 0.00
912 29 0.00
913 158 0.02
914 30 0.00
915 18 0.00
916 20 0.00
917 20 0.00
918 32 0.00
919 67 0.01
920 38 0.00
921 6 0.00
922 15 0.00
923 14 0.00
924 20 0.00
925 4 0.00
926 16 0.00
927 3 0.00
928 5 0.00
929 21 0.00
930 28 0.00
931 14 0.00
932 17 0.00
933 9 0.00
934 10 0.00
935 6 0.00
936 12 0.00
937 2 0.00
939 2 0.00
940 8 0.00
941 5 0.00
942 13 0.00
943 55 0.01
944 8 0.00
945 14 0.00
946 5 0.00
948 4 0.00
949 4 0.00
950 3 0.00
952 6 0.00
953 5 0.00
954 2 0.00
955 4 0.00
957 1 0.00
960 1 0.00
963 2 0.00
965 10 0.00
966 5 0.00
969 2 0.00
971 1 0.00
972 144 0.01
973 410 0.04
974 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
CCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACG
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
Found at i:16988878 original size:197 final size:195
Alignment explanation
Indices: 16988537--16988930 Score: 596
Period size: 197 Copynumber: 2.0 Consensus size: 195
16988527 GATCACGTCT
* *
16988537 ACCAAGTTTGGGCCCAAAACTCCTTGTGAACAAATTTTAAAAAATCCTAAACCATAAAAAGTTTC
1 ACCAAGTTTGGGCCCAAAACTCCTTGTGAAAAAATTTTAAAAAATCCGAAACCATAAAAAGTTTC
* * *
16988602 GAAAATCTTAAAAAATAGAAAATGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAAGGAC
66 AAAAATCTGAAAAAATAGAAAAGGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAAGGAC
* *
16988667 CATTATATGAATTTACAAGCCAA-AAAAATGGCATTGGCACAGTAGAAATATGAAGATGTGCCTA
131 CATTATATGAATTTACAAG-CAAGAAAAATGGCATCGGCACAGCAGAAATATGAAGATGTGCCTA
16988731 A
195 A
* *
16988732 ACCAAGTTTGAGG-CCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCGGAACCATAAAAAGTTT
1 ACCAAGTTTG-GGCCCAAAACTCCTTGTGAAAAAATTTTAAAAAATCCGAAACCATAAAAAGTTT
* *
16988796 CAAAAAATCGTGAAAAATATA-AAAAGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
65 C-AAAAATC-TGAAAAA-ATAGAAAAGGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAA
* * *
16988860 GGACCATTGTATGAATTTACAAGTAAGAAAAATGGCATCGGCACGGCAGAAATATGAAGATGTGC
127 GGACCATTATATGAATTTACAAGCAAGAAAAATGGCATCGGCACAGCAGAAATATGAAGATGTGC
16988925 CTAA
192 CTAA
16988929 AC
1 AC
16988931 TCACCTGCCA
Statistics
Matches: 180, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
195 58 0.32
196 10 0.06
197 109 0.61
198 3 0.02
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (195 bp):
ACCAAGTTTGGGCCCAAAACTCCTTGTGAAAAAATTTTAAAAAATCCGAAACCATAAAAAGTTTC
AAAAATCTGAAAAAATAGAAAAGGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAAGGAC
CATTATATGAATTTACAAGCAAGAAAAATGGCATCGGCACAGCAGAAATATGAAGATGTGCCTAA
Found at i:16989112 original size:26 final size:26
Alignment explanation
Indices: 16989076--16989125 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16989066 GACTTAGGCA
16989076 TACGGAGTTCATT-CCTAGTCTAAGCT
1 TACGGAGTTCATTCCCT-GTCTAAGCT
*
16989102 TACGTAGTTCATTCCCTGTCTAAG
1 TACGGAGTTCATTCCCTGTCTAAG
16989126 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (26 bp):
TACGGAGTTCATTCCCTGTCTAAGCT
Found at i:16989992 original size:26 final size:26
Alignment explanation
Indices: 16989963--16990015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16989953 GTTGACTTAG
16989963 GCATACGAAGATCATTCCCT-GTCTAA
1 GCATACGAAGATCATT-CCTAGTCTAA
*
16989989 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGATCATTCCTAGTCTAA
16990015 G
1 G
16990016 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGATCATTCCTAGTCTAA
Found at i:16991755 original size:26 final size:26
Alignment explanation
Indices: 16991719--16991771 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16991709 GTTGACATAG
16991719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16991745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16991771 G
1 G
16991772 ATTCGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16992676 original size:159 final size:159
Alignment explanation
Indices: 16992434--16992789 Score: 446
Period size: 159 Copynumber: 2.2 Consensus size: 159
16992424 TCGTTTCATC
* * * * *
16992434 GGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAAATCAGACCGGACCGAGGGTTATGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
* * * *
16992499 AAGGATCGGCAGCACGCAGAGGGGGACCCA-GTCGATCCCCT-ACTTGCGCATCCCGCCCCTCTG
66 AAGGATCAGCAGCACGCAGAGGGGGA-CCAGGTCGAT-CCATGACTTGCGCATCCAGCCACTCTG
* *
16992562 GCCGACTGAGCGCCCGTATGCTCATTTCGTG
129 GCCGACTGAGCGCCCGCACGCTCATTTCGTG
* * ** * * *
16992593 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGATTGGACTGGACTGAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
* * * * *
16992658 CAGGATCAGTAGCTCGCAGAGGGGGACCAGGTCGATCCATGGCTTGCGCATCCAGCCATTCTGGC
66 AAGGATCAGCAGCACGCAGAGGGGGACCAGGTCGATCCATGACTTGCGCATCCAGCCACTCTGGC
* *
16992723 CGGCTGAGCGCCCGCACGCTCGTTTCGTG
131 CGACTGAGCGCCCGCACGCTCATTTCGTG
*
16992752 GTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16992790 CATACGGAGT
Statistics
Matches: 167, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 6 0.04
159 161 0.96
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
AAGGATCAGCAGCACGCAGAGGGGGACCAGGTCGATCCATGACTTGCGCATCCAGCCACTCTGGC
CGACTGAGCGCCCGCACGCTCATTTCGTG
Found at i:16992799 original size:26 final size:26
Alignment explanation
Indices: 16992763--16992815 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16992753 TTTGACTTAG
16992763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16992789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16992815 G
1 G
16992816 ATTGGACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16993523 original size:26 final size:26
Alignment explanation
Indices: 16993492--16993544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16993482 GTTGACTTAG
* *
16993492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGGCTAA
16993518 GCATACGGAGTTCATTACCAGGCTAA
1 GCATACGGAGTTCATTACCAGGCTAA
16993544 G
1 G
16993545 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGGCTAA
Found at i:16994425 original size:26 final size:26
Alignment explanation
Indices: 16994389--16994438 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16994379 GACTTAGGCA
16994389 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
16994415 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16994439 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:16995310 original size:26 final size:26
Alignment explanation
Indices: 16995274--16995326 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16995264 GTTGACTTAG
16995274 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16995300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16995326 G
1 G
16995327 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16996197 original size:26 final size:26
Alignment explanation
Indices: 16996161--16996239 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16996151 GTTGACTTAG
16996161 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16996187 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
* *
16996213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16996239 G
1 G
16996240 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16997092 original size:26 final size:26
Alignment explanation
Indices: 16997063--16997115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16997053 GTTGACTTAG
*
16997063 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16997089 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16997115 G
1 G
16997116 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16997964 original size:26 final size:26
Alignment explanation
Indices: 16997928--16997980 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16997918 GTTGACTTAG
16997928 GCATACGGAGTTA-ATTCCAAGTCTAA
1 GCATACGGAG-TACATTCCAAGTCTAA
*
16997954 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCAAGTCTAA
16997980 G
1 G
16997981 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCAAGTCTAA
Found at i:16999247 original size:57 final size:57
Alignment explanation
Indices: 16999159--16999272 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
16999149 TGTAATGGGG
16999159 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
16999216 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
16999273 TTTATGCGTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (57 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
Found at i:17000459 original size:26 final size:26
Alignment explanation
Indices: 17000424--17000476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17000414 GTTAACTTAG
*
17000424 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
17000450 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
17000476 G
1 G
17000477 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:17001340 original size:26 final size:26
Alignment explanation
Indices: 17001304--17001356 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17001294 GTTGACTTAG
17001304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17001330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17001356 G
1 G
17001357 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17001907 original size:877 final size:878
Alignment explanation
Indices: 16999914--17004777 Score: 6214
Period size: 877 Copynumber: 5.5 Consensus size: 878
16999904 CGGCATTAGG
* * *
16999914 GTTTTTAGGTTAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * ** *
16999979 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCTAACCATAAAAAGTTTTGAAAATCATGAA
66 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
17000044 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* *
17000109 TTACAAGCCAGAAAAATGGTATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
196 TTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * **
17000174 CCCTATCGATCAATGGCTTGCGCATCCCGCCTCTCTAGCCGGCACAGTGCCCGCCCGCCCGCCCG
261 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG
* * ** *
17000239 CCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGATCAGAC
322 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-
* * * * * * *
17000304 CGAAGGTTGTGGTAGCAGGATTGGCAGGACGCAAAGGGGGACCCAGTCGATCCCCGACTCGCACA
386 CGAAGG--GT--T-GC--GA----CAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCA
* * * *
17000369 TCCCGCCCCTCTGGCCGGTTGAGCGCC-CGCATGCTCGTTTCATTGGTTAACTTAGGCATACGGA
440 TCCCGCCCCTCTGGCCGGCTGAGCGCCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGA
* * * * * *
17000433 GTTCATTCCTAGTCTAAGCATAAGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCAAGGGTTG
505 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
17000498 CGGCA-ACACAAGCTAGGCTCGGGCATGTGCTGGTGTCGTGTTTTTCTTCGTCGGGACACCGTCG
570 CGGCAGA-ACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCG
* * ** * * *
17000562 CCGGAGAACCTGACCTGCGATATTGGGGTTCCGGCGATTAAGGGGGCCCGGGGGGGTGTGCGCAC
634 CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA-T-CGGGGGGCCGAGGGGGTGTGCGCAC
** * *
17000627 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCATTATCCCTTATCAAACCTCAA
697 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
**
17000692 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACGAAAGTG
762 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
17000757 TCTGAAATGGGAACATTTTTTTCAAAATGGTAACAAAATCTTGTACACTTCGA
827 TCTGAAATGGGGACATTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGA
* *
17000810 GTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
17000875 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCA-AACCTTTAACAGTTGCGAAAATCCTGA
66 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
17000939 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAA
130 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* *
17001004 TTTACAAGCCATAAAAATGACATTGGCATGGCAAAAATATGAAGATGTGCCTAAA-CCAGCCTAC
195 TTTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA-CCTAC
* * * *
17001068 CACCCTATCCATCCACGGCTTGCGCATCCCGCCACTCTGGCCAGCGTAGTGCCCGCCCGCCCGTC
259 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * *
17001133 CGCTCATTTCGTCGGTTGGCTTACGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACTG
324 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC-G
*
17001198 AA-GGTTGCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTG
388 AAGGGTTGCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTG
* * *
17001262 GCCGGCTGAGCGCCTAG-ACGTTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
453 GCCGGCTGAGCGCCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
17001326 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGAATATGC
518 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAACATGC
* * *
17001391 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCTTCGGGACACCATCGCTGGAGAACCTGAC
583 TAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCTGGAGAACCTGAC
** ** *
17001456 CGGCGGCATAAGGGTTCCGGCGATCGGGGGGCCGACAGGGTGTGCGCACATGATGTGCGGTGGGT
648 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
17001521 GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCCCCT
713 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
17001586 AAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
778 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
* *
17001651 TTTTTTCAAATGGTCACAAAATCTAGTACACTTCTA
843 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
17001687 GTTTGTAGCTGAATTTGTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACAAAATTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
17001752 GCCAAAACTCCTTCTGAAAGAATTTTAAAAAATCCAGAAGCGTAAAAAGTTTCAAAAATCGTGAG
66 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
17001817 AAATAGAAAACGAATCGTCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
17001882 TTACAAGCTAGAAAGATGGCATTGGCATTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
196 TTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
17001947 CCCTATCGATCCACGGCTTGCGGATCCCACCTCTCTGGCCGACGTAATGCCCCCCCGCCCGCCCA
261 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * *
17002012 CTCGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAG
326 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAAG
* * ** *** *
17002077 GGTTACGACAGCACGCAGAAGGGGACCCGACCGATCCTTAACTTGTGCATCCCGCCCCTCTGGCC
391 GGTTGCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
17002142 GACTGGGCGCC-CGCACGTTCGTTTCG-TGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
456 GGCTGAGCGCCTCGCACGCTCGTTTCGTTGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*** * ** *
17002205 AAGCATACGGAGTTCATTTTTAGTCTAAGATCGGACCAGACCGAGGGTTGCATCAGCACATGCTA
520 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAACATGCTA
* * *
17002270 GGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCT-TAGAACTTGACC
585 GGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCG-CTGGAGAACCTGACC
* *** *
17002334 GGCGGCATTGGGGTTTCGAATATCGAGGGGGCC-AGGGGGTGTGCGCACATCATGTGCGATGGGT
649 GGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
17002398 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAGCTCACACCCCGTT
713 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
17002463 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
778 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
17002528 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
843 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
17002564 GTTGTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
17002629 GCCAAAACTCCTTC-CAAAAATATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGA
66 GCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
17002693 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATCAA
130 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * ** * *
17002758 TTTACAAGCCTGAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAACCCACATACC
195 TTTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
17002823 ACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTAGCCGGCGTAGTGGCCGCCCGCCCGCTC
260 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* ** * * * ** * *
17002888 GCTCGTTTTGTCGGCCGACTTAGGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCGGACCAA
325 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAA
* * *
17002953 GGGTTGCGACAGTAGGATCAGCAGCACGTAGAAGGGGACCCGGCCGATCCCCGGCTTGCACATCC
390 GGGTTGCGAC---A-G--CA-C-GCA-G-AG--GGGGACCCGGTCGATCCTCGGCTTGCGCATCC
* * * * *
17003018 GGCCCCTCTGGCCGGCTGAGCG-CTCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTT
443 CGCCCCTCTGGCCGGCTGAGCGCCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTT
* * *
17003082 CATTTCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
508 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A---CC-G----
* * * *
17003147 ACATCAGACCAGACAGAGGGTTACGGCAGCACATACT-GGACTC-GAGCATGTGCTGGTGCCATA
558 ------GA-C---C-GAGGGTTGCGGCAGAACATGCTAGG-CTCAG-GCATGTGCTGGTGCCGTA
* * * * * * *
17003210 TTTTTTTTCATCGGGACACCATCACCGTAGAACCTGACCAGG-GGCATTGGGGTTTCGGTGATCG
610 TTTTTCTTCGTCGGGACACCATCGCTGGAGAACCTGACC-GGCGGCATTGGGGTTCCGGCGATC-
* * * *
17003274 GGGGGGTCCAGAGGGGGTGGGCGCACATCATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTG
673 GGGGGG-CC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
17003339 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAG
736 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
17003404 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATC
801 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATC
17003469 TTGTACACTTCGA
866 TTGTACACTTCGA
*
17003482 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
17003547 GCCAAAACTCCTTCTAAAAAAATTTTAAAATATCCTGAACCGGAAAAAGTTTCAAAAATCGTGAA
66 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
17003612 AAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* *
17003677 TTGCAAGCCAGAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
196 TTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
17003742 CCCTATCGATCCACGACTTGCGCATCCCGCCTCTCT-ACCTGGCGTAGCGCCCGCCCGCTCGCCC
261 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCCC
* *
17003806 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TCCCAAATCTAAGATTAGA-CTGGACT
325 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGATC-GGAC-
* *
17003869 G-AGGGTTGTGGCAGTAGGATCGGCAGCACACAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCA
387 GAAGGG-T-T-GC-----GA----CAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCA
* * *
17003933 TCCCGCCCCTCTGGCTGGCTGAGCG-ATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
440 TCCCGCCCCTCTGGCCGGCTGAGCGCCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGA
*
17003997 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
505 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
17004062 CGGTAGAACATGCTATGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGACACCATCG
570 CGGCAGAACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGACACCATCG
* * * * * * *
17004126 -TCGAAGAACCTGACCGACGGCATTGGGGTTCTGACAATCGGGAGGGGCCGGGGGGGTGTGCACA
634 CT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GG-GGGGCCGAGGGGGTGTGCGCA
** * *
17004190 CATGATGTGTAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTG
696 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
17004255 AGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAACT
761 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
17004320 GTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGA
826 GTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
17004373 GTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAACAAAGATCACGTCTACCAAGTTTGG
1 GTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
17004438 GGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATATC-GAACCGTAAAAAGTTTCAAAAATCATG
65 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTTTCAAAAATCGTG
* * *
17004502 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAAGAAGGGTAAAGGGACCATTGTATGA
129 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * * * *
17004567 ATTTACAAGCCAGAAAAATGGCATTGGCACT-GTAGAAACATGAAGAGGTGCCTAAACACACCTA
194 ATTTACAAGCCAGAAAAATGGCATTGGCA-TGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * *
17004631 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCTCGCCCGC
258 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
17004696 TCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACC
323 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-C
17004761 G-AGGGTTGCGACAGCAC
387 GAAGGGTTGCGACAGCAC
17004778 ATGCTGGGCT
Statistics
Matches: 3482, Mismatches: 395, Indels: 198
0.85 0.10 0.05
Matches are distributed among these distances:
876 13 0.00
877 1132 0.33
878 170 0.05
879 1 0.00
880 236 0.07
881 3 0.00
883 2 0.00
884 5 0.00
885 3 0.00
886 3 0.00
887 2 0.00
888 1 0.00
889 116 0.03
890 3 0.00
891 213 0.06
892 479 0.14
893 17 0.00
895 3 0.00
896 275 0.08
897 4 0.00
899 2 0.00
907 1 0.00
908 2 0.00
910 2 0.00
911 2 0.00
914 6 0.00
915 95 0.03
916 5 0.00
917 7 0.00
918 657 0.19
919 6 0.00
920 3 0.00
921 3 0.00
922 2 0.00
923 1 0.00
924 2 0.00
926 3 0.00
927 1 0.00
930 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCAGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAAG
GGTTGCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAACATGCTAG
GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGCTGGAGAACCTGACCGG
CGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGA
Found at i:17003099 original size:26 final size:26
Alignment explanation
Indices: 17003070--17003147 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
17003060 GTTGACTTAG
* *
17003070 GCATACGGAGTTCATTTCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17003096 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17003122 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17003148 CATCAGACCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17004024 original size:26 final size:26
Alignment explanation
Indices: 17003988--17004040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17003978 GTTGACTTAG
*
17003988 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17004014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17004040 G
1 G
17004041 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17006192 original size:26 final size:26
Alignment explanation
Indices: 17006156--17006208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17006146 GTTGAGTTAG
*
17006156 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCGGTCTAA
17006182 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCGGTCTAA
17006208 G
1 G
17006209 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGGTCTAA
Found at i:17006701 original size:884 final size:880
Alignment explanation
Indices: 17004841--17014683 Score: 12249
Period size: 888 Copynumber: 11.3 Consensus size: 880
17004831 CGCTGGAGAA
* * *
17004841 CCTTCTGAAAAAATTTAAAAAAATACTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
1 CCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
17004906 ATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17004971 AGAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * * *
17005036 TCCACGGCTTGCACATCCCTTCTTTCTGGTCGGCATAGTGCCCGCCCGCCCATCCGCCCGTTTCG
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCG-CC-T-CGCTCGTTTCG
* ** ** * ** * * * * * *
17005101 TCGGTTGGCTTAGGTATATAGAGTTCATTCTTAGTCTAAGATCGGATTGGACCAAGTGTTGTGGC
253 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGT
* * * * * *
17005166 AGCAGGAT-TAGCAGCATGCAGAGGGTGACCCGGTCGATCCCTGGCTTGCGCATCACGCCCCTCT
318 AGCAGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* ** * * * * ** *
17005230 GGTCGACTGAGCGCTTGTACGATTGTTTCGTGGGTTGACTCAGGCATACAAAGTTCATTCTCAGT
382 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
17005295 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGC
447 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
*
17005360 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGATACCATCGTCGGAGAACCTGAC
512 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGAC
* * * *
17005425 CGGTGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGGTTGTGCACACATGATGTTCGATGG
577 CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGG
17005490 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
640 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
17005555 TTAAACAGCATTTGAGATTTTACAAGTTTACTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
705 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
17005620 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTGTTTTGCGCAA
770 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT-TGCAT
*
17005684 GCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACT
833 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * **
17005732 CCTTCTGACAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
17005797 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
17005862 AAAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGAGCCAAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * **
17005927 TCCACGACTTGCGCATCCCGCCTCTCTGAG-CGACGTAGTGCCCG-CTCGCTTATTTCGTCGGTT
195 TCCACGGCTTGCGCATCCCGCCTCTCTG-GCCGGCGTAGTGCCCGCCTCGCTCGTTTCGTCGGTT
*
17005990 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGTGGTAGCAGG
259 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAGG
* * * * * * *
17006055 ATTGGCAGCACACAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
324 ATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* ** * *
17006120 TAAATGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCTGTCTAAGCA
389 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
17006185 TACGGAGTTCATTCCCGGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTC
454 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
17006250 AGGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGACGAC
519 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGCGGC
*
17006315 ATTGGGGTTCCGACGATCGGGGGGCACCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTA
584 ATTGGGGTTCCGACGATCGGGGGG--CCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTG
17006380 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
646 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** * **
17006445 AGCATTTGAGATTTTACAGGTTCACCGCCAGTAGCCATTAAAGTGTCTGAAATGGTAACACTTTT
711 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
17006510 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTTTGCATGCCAACA
776 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGCATGCCAACA
* *
17006575 AAAATACAATGATCACGTCTGCCAAGTTTGGGGCCAAAACT
840 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17006616 CCTTCTAAAAAAATTTTAACAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
17006681 ACGGGTCGGCTTGGCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
17006746 AGAAAAATGGCATTGGCACGGCAGAATTATGAAGATGTGCCTAAACTCACGTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * **
17006811 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCTGCGTAATGCCCGCCCGCCCGCTCGTTTCGTCAT
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG--C-CTCGCTCGTTTCGTCGG
* *
17006876 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGAATCAAGGGTTGCGGTAGCA
257 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCA
* * * * * * **
17006941 GGATCGACAGCACGCAGAAGGGGACCTGATCGATCCTCGACTTGCGCGTCCCACCCCTCTGGCAT
322 GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
17007006 ACTGAGAGCCCGCACGCTCGGTTT-GTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC---
387 ACTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17007061 -C---C--AG-----T--C-G---AAGATCAGACCGGGCTGAGGGTTGCGACAGCACTTGCTGGG
451 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
17007109 CTCGGGCATGTGCTGATGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGT
516 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGC
* * * *
17007174 AGCGTTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCT
581 GGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17007239 GGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
645 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
17007304 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAATAGGGACACTTT
710 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
17007369 TTTCAAATGGTCACAAAATCTTGTCCAGTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAA
775 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATGCCAAC
*
17007434 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACT
839 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * * *
17007476 -CTATCTGAAAAAATTTTAAAAAATCCCTAAGAGCAAAAAGTTTCGAAAATCATGAAAAATAGAA
1 CCT-TCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
17007540 AATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
64 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * * *
17007605 CAAAAAAATTGCATTGGCACGGTAGAAATATGAAGATGTGCCCAAACCCACCTCCCACCCTATCG
129 CAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
17007670 ATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGTCGTAGTGCTCAC-CCGTCTGTCCGTTCATTT
194 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC-C-CGCC-TC-G--C--TCGTTT
** * *
17007734 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAAAT-GAAGGGTTTC
251 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCG-AGGGTTGC
* * * * * *
17007798 AGTAGCAGGATCGACAGCACGCAGAGGGGAACCCGGTCGATCCCTGGCTTACGCATCCTGCCCCT
315 GGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
* * **
17007863 CCGGCCGGCTGAGCGCCCGCACGCTCACTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
380 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
17007928 G----A-C-TA---AG---A-T--C-G-----GA-C---CC-GATCGAGGGTTGCGGCAGCACAT
445 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
*
17007967 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTG
510 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTG
* ** *
17008032 ACCGGCGGCATTAGGGTTCCGGTGATCGAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
575 ACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
17008097 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
638 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17008162 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
703 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17008227 ACACTTTTTTCAAATGGTCAC-AAATCTTGTACAATTCGAGTTTTTAGCTGAATTGTTTTATGCA
768 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTTGCA
* * * *
17008291 CGCCAACAAAAATACAAGGATCATGTCGT-CCAAGTTTGGGGCTAAAACG
832 TGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACT
* * * *
17008340 CCTTCTGAAAAAATTTGAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
17008405 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
17008470 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
17008535 TCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCG
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG----CCCG--C-CTCGCTCGTTTCG
* * * * **
17008600 TCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTTTAAGATC-AGACCGGATCAAGGGTTTTGG
253 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAATCGAGGGTTGCGG
* * ** *
17008664 TAGTAGGATCGATAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-A
317 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * *
17008728 GGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGCTTAACTTAGGTATAAGGACTTCATTCCCAGT
382 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
17008793 CTAAGCATACAGAATTCATTCCCAGTCGAAGATC-GAACCGGACCGAGGGTTACGGTAGCACATG
447 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATG
* * * **
17008857 CTGAGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCACCGGAGAACCTGA
511 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGA
* * * ** * * * * *
17008922 TCGACGGCATCGGGGTTCCGGTGATCGGGGGGGTCAGGGGGG-G-ACGTACATGACGTGCGATGG
576 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
17008985 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
640 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17009050 TTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
705 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17009115 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATGTTTTTGTGCATG
770 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATG
* * *
17009179 CCAACAAAAATACAAAGATCACGTCTACCACGTTTGGGGCCAAAACG
834 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17009226 CCTTCTGAAAATATTTTAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
1 CCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
17009291 ACGAGTCGTCTTGCCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCT
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
17009356 AGAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
17009421 TCCACGGCTTACGCATCCCGCCTCTCTGGCCGGCGGAGTGCCCGCCTGCCCGCTCGCTCGTTTCG
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG--C-CC-G--C-CTCGCTCGTTTCG
** * * * *
17009486 TCGGTTGGCCAAGGCATATGGAGTTCATTCCCTGTCTAAGATC-AGACCGAACCGAGGGTTGCAG
253 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAATCGAGGGTTGCGG
* * * *
17009550 CAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATGCCGCCCCTCT
317 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * * * *
17009615 GGCTGGCTGAACGCTCACAGGCTTGTTTCGTGGGTCGACTTAGGCATACGGAGTTTATTCGCAGT
382 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
17009680 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGAACCGAGGGTTACGGCAGCACATGC
447 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * *
17009745 TAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTTC-TCGGGACACCATCGTCGGGGAACCTGG
512 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTC-TTCGTCGGGACACCATCGTCGGAGAACCTGA
* * *
17009809 CCGACGGCATTGGGGTTCCGACGATCGGGGGG--GGTCGAGGGGAGTCCGCACATGATGTGCGAT
576 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG--G-GGGGTGTGCGCACATGATGTGCGAT
* * *
17009872 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATTAAACCTTGAGAACTCACACCC
638 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17009937 CC-TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
703 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17010001 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCA
768 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCA
* * ** *
17010066 TGCCAACAAAAATACAAGGATGACATCTATGAAGTTTGGGACCAAAACT
832 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17010115 CCTTATGAAAAAAGTTT------T-------G--AAAA---TC----A---TGAAAAATAGAGAA
1 CCTTCTGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
17010155 CGAGTCATCTTGCCATGAAACTTCACATGAAAGCTTGAGGGACCATTGTATGAATTTACAAGCCA
66 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
17010220 GAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
131 GAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
17010285 CCACGGCTTGCGCATCCCGCATCTCTGGCTGGCGTAGTGCTCGCTTGCCAACCCGCTCGTTTCGT
196 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC-C-C--G-C--CTCGCTCGTTTCGT
* * * * * *
17010350 CGGTTGGCTTAGGCATACAGACTTTATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGT
254 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ATCGAGGGTTGCGGT
* ** * * ** * *
17010414 AGTAGGATCGACAGCACATAGAGGGGGA-CCTAGCCGATCCCTTGCTTGTGCATCCCCCCCCTCT
318 AGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
17010478 GGTCGGCTGAGTGCCCACACACTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
382 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * ** *
17010543 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGGTGCAACAGCACATAC
447 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
17010608 TGGGCTCGGGCATGTCCTGGTGTCACATTTTTCTTCGTTGGGACACCATCGTCGGAGAACCTGAC
512 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGAC
* * * * *
17010673 CGGCAGCATTGGGGTTCCGGCGATCAGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGAAGGGT
577 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
17010737 GCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
642 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * ** *
17010802 AAAGAGCATTTAAGATTTTACAGGTTCGCCGTCAGTAGCCATTAAAGTGTCTGAAATGGTAACAT
707 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
17010867 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCC
772 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGCATGCC
* *
17010932 AACAAAAATACAATGATCACGTCTGCCAAGTTTGGGGCCAAAACT
836 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
17010977 CCTTCTAAAAAAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
17011042 ACGGGTCGTCTTCCCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
17011107 AGAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
17011172 TCCACGGCATGCGCATCCCGCCTCTCTGGCCGGCGGAGTGCGCGCCCGCC-CGCTCGCTTATTTT
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCGCCTCGCTCG----TTTC
* * * * **
17011236 ATTGGTTGGCCTAGGCATATGGAGTTCATTCCTTGTCTAAGATC-AGACCGAA-CTGAGGGTTGC
252 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAATC-GAGGGTTGC
* * * * **
17011299 AGCAGCAGGATCGACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATGTCGCCCCT
315 GGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * **
17011364 CTGGCCGACTGAACGCTCACAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCGTA
380 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
17011429 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTACGGCAGCACAT
445 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
* * *
17011494 GCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTTGTCGGGACACCATCGTCGGGGAACCTG
510 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTG
* * * *
17011559 ACCGGCGGCATTGGGGTTCTGACGAT--------CGGAGGGGTGTCCGCACATGATGTGCAATGG
575 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
17011616 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCC
640 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17011681 CTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAC
705 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17011746 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATG
770 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATG
* * ** * *
17011811 CCAACAAAAATACAAGGATGATGTCTATGAAGTTTAGGACCAAAACT
834 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17011858 CCTTATGAAAAAAGTTT------T-------G--AAAA---TC----A---TGAAAAATAGAGAA
1 CCTTCTGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
17011898 CGAGTCATCTTGCCATGAAACTTCACATGAAAGCTTGAGGGACCATTGTATGAATTTACAAGCCA
66 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17011963 GAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
131 GAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
17012028 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCTGCCAGCCCACTCG-TTCTG
196 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCT--C-G----CTCGTTTC-G
* * * * * *
17012092 TCGGTTGGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGCGG
253 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ATCGAGGGTTGCGG
* * * * * *
17012156 TAGCAGGATCGACAGCACGTATA-AGGGA-CCTAGCCGATCCCCGGCTTGTGCATCCCGCCCCTC
317 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
17012219 TGGTCGACTGAGCGCTCGCACACTCGTTTCCTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG
381 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
17012284 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGGTGCGACAGCACATA
446 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * *
17012349 CTGGGCTCGGGCATGT-CTTGGTGTCGCATTTTTCTTCGTCGGGACATCATCGTCGGAGAACCTG
511 CTGGGCTCGGGCATGTGC-TGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTG
* * * *
17012413 ACCGGTGGCATTGAGGTTCCGACGATCGGGGGGCC-AGTGGGTGTGCGCACATGATGTGCGATGG
575 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
17012477 GTGCTGGTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
640 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17012541 TTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGAC
705 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
17012606 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGAATTTTTTTATGCATG
770 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATG
* * * *
17012671 CCAAGAAAATTA-AAGGATCACGTCTAACAAGTTTGGGGCCAAATCT
834 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * ** *
17012717 CCATCTAAAAAAATTTTAAAAAATCTCGAACC-TAAAAGGTTTTGAAAATCATGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
17012781 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17012846 AAAAAAATGGCATTGGCATGGTAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
17012911 TCCACAGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGCCGCTCGTTTCG
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCG-CC--TCGCTCGTTTCG
* * * * * *
17012976 TCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAACCGGACCAAGGG-T----T
253 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGT
* * * ** * *
17013036 A-C-GG-T----AGCACGTAGAGAGGGACCCGATCGATCCTCAACTTACGCATCCCACCCCTCTG
318 AGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
17013094 GCCCG-CTGAGCGACTGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCAAGT
383 G-CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
17013158 CTAAG-AT-C--AG---A----C---C--AGAT----------CGAGGGTTACGACAGAACATGC
447 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
17013197 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCATCGGAGAACCTGAC
512 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGAC
** * *
17013262 CGGCGGCATTGGGGTTTAGGCGATCGGGTGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGG
577 CGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
17013327 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCT
641 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
17013392 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CC
706 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
17013456 CTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCACGC
771 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATGC
* ** *
17013521 CAA-AACAAATACAAGGATCATGTCTACCAAGTTTGGCACCAAAAGT
835 CAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
17013567 CCTTC-GAAAAAAATTTAAAAAAATCCGAAACCATAAAAAGTTT-AGAAAATCGTGAAAAATAGA
1 CCTTCTG-AAAAAATTTTAAAAAATCCG-AACCGTAAAAAGTTTCA-AAAATCGTGAAAAATAGA
* *
17013630 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATGTACAAG
63 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
17013695 CCAGAAAAATGGCATTGGTATGGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATC
128 CCAGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
17013760 GATCCACGGCTTGCGCATCCCGCTTCTCTGGCCGACGTAGTGCCCGTCCGTCCGCCCGCTCGATT
193 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CC-T-----CGCTCGTTT
* * *
17013825 CGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCG
251 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCG
* * * *
17013890 ATAGCAGGATCGGCAGCATGCAGAGGGGGA-CC---C-A------GCTTGCGCATCCCGCCCCTT
316 GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
17013944 TGGTCGACTGAGCTCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
381 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
17014009 TCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
446 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * * *
17014074 CTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTTGCCAGGACACCATCGCCGGAGAACCTAA
511 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGA
* * * *
17014139 CCGGCGGCATTAGGGTTCCGACGATCGAGTGGTGCTGGGGGGGTGTTCGCACATGATGTGCGATG
576 CCGGCGGCATTGGGGTTCCGACGATCG-G-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
17014204 GGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCC
639 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17014269 CTTAAAGAGCATTTGATATTTTACAAGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGA
704 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17014334 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAC
769 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTTGCAT
* * * *
17014399 GCCAACAAAAATCCAAGGATCATGTCTACCAAGTTTGGGGCTAAAACG
833 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
17014447 CCTTCTGAAAAAATTTGAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAA
1 CCTTCTGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
17014512 ATGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
65 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17014577 AAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGA
130 AGAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
17014642 TCCACGGCTTGCG-ATCTCGCCTCTCTGGCCGTCGTAGTGCCC
195 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCC
17014684 ACCAGCCCTC
Statistics
Matches: 7815, Mismatches: 869, Indels: 548
0.85 0.09 0.06
Matches are distributed among these distances:
846 1 0.00
847 108 0.01
848 7 0.00
849 101 0.01
850 171 0.02
851 255 0.03
852 76 0.01
853 6 0.00
854 226 0.03
855 240 0.03
856 5 0.00
857 5 0.00
858 5 0.00
859 53 0.01
860 640 0.08
861 129 0.02
862 298 0.04
863 557 0.07
864 674 0.09
865 192 0.02
866 7 0.00
867 3 0.00
868 10 0.00
869 9 0.00
870 5 0.00
871 4 0.00
872 12 0.00
873 93 0.01
874 8 0.00
875 4 0.00
876 3 0.00
877 3 0.00
878 104 0.01
879 186 0.02
880 297 0.04
881 260 0.03
882 8 0.00
883 311 0.04
884 696 0.09
885 16 0.00
886 580 0.07
887 207 0.03
888 761 0.10
889 264 0.03
890 1 0.00
891 211 0.03
892 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CCTTCTGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
GAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
Found at i:17009687 original size:26 final size:26
Alignment explanation
Indices: 17009658--17009710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17009648 GTCGACTTAG
* *
17009658 GCATACGGAGTTTATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17009684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17009710 G
1 G
17009711 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17010557 original size:26 final size:26
Alignment explanation
Indices: 17010521--17010573 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010511 GTTGACTTAG
17010521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17010547 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17010573 G
1 G
17010574 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17011438 original size:26 final size:26
Alignment explanation
Indices: 17011409--17011461 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17011399 GTTGACTTAG
* * **
17011409 GCATACGGAGTTTATTCGTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17011435 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17011461 G
1 G
17011462 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17012299 original size:26 final size:26
Alignment explanation
Indices: 17012260--17012315 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17012250 TGGGTTGACT
*
17012260 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17012286 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17012312 TAAG
1 TAAG
17012316 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17014017 original size:26 final size:26
Alignment explanation
Indices: 17013988--17014040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17013978 GTTGACTTAG
*
17013988 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
17014014 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17014040 G
1 G
17014041 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17015725 original size:26 final size:26
Alignment explanation
Indices: 17015689--17015741 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17015679 GTTGACTTAG
*
17015689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17015715 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17015741 G
1 G
17015742 ATCGCACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17016793 original size:26 final size:26
Alignment explanation
Indices: 17016741--17016793 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17016731 CTCCTTCTGA
* * *
17016741 AAAAATTTTAAAAAATCCCGAACAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
* *
17016767 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
17016793 A
1 A
17016794 GAAACAGTCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCACGAAAAAT
Found at i:17017017 original size:585 final size:585
Alignment explanation
Indices: 17015905--17017041 Score: 1895
Period size: 585 Copynumber: 1.9 Consensus size: 585
17015895 ATGTGCGATG
* *
17015905 GGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17015970 CTTAAAGAGCATTTGAGATTTTACAAGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
66 CTTAAAGAGCATTTGAGATTTTACAAGCTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGA
* * * *
17016035 CCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTATTTAGCTGAATTTTTTTATGCAT
17016100 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
* **
17016165 AAAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
261 AAAAATCCCAAACAATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
17016230 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
326 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGACA
* * *
17016295 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATTC
391 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTACGCATTC
** * * * * *
17016360 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 CCCCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * *
17016425 TGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGATATGCAATA
521 CGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGATATGCAATA
17016490 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17016555 CTTAAAGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAAGCTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGA
17016620 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTATTTAGCTGAATTTTTTTATGCAT
131 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTATTTAGCTGAATTTTTTTATGCAT
*
17016685 GCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTT
*
17016750 AAAAAATCCCGAACAATAAAAAGTTTCAAAAATCATGAAAAATAG-AAAC-AGTC-TCTTGGCCA
260 AAAAAATCCCAAACAATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT-GCCA
*
17016812 TGAAACTTCAACATGAAGGCTTAAGGGAACCATTGTATGACTTTACAAGCCAGAAAAATGGCATT
324 TGAAACTTC-ACATGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATT
17016877 GACATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTACGC
387 GACATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTACGC
*
17016942 A-TCCCCCTCTCTGGCCGGCATAGTGCCCGCCCACCCACCCGCTCGTTTCATCAGTTGGCTTAGG
452 ATTCCCCCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCTCGTTTCATCAGTTGGCTTAGG
17017006 CATACGGAGTTCATTCCCAATCTAAGATCGAACCAG
517 CATACGGAGTTCATTCCCAATCTAAGATCGAACCAG
17017042 GCCAAGGGTT
Statistics
Matches: 513, Mismatches: 35, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
583 4 0.01
584 17 0.03
585 351 0.68
586 141 0.27
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (585 bp):
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAAGCTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGA
CACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTATTTAGCTGAATTTTTTTATGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
AAAAATCCCAAACAATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGACA
TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTACGCATTC
CCCCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCTCGTTTCATCAGTTGGCTTAGGCATA
CGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGATATGCAATA
Found at i:17018124 original size:159 final size:159
Alignment explanation
Indices: 17017856--17018211 Score: 577
Period size: 159 Copynumber: 2.2 Consensus size: 159
17017846 TGGTTTCATC
* * *
17017856 GGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGATCGGACTGAAGGTTGCAGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGCAGCAG
* * * * * *
17017921 CTGGATGAGCAGCATGCAGAGTGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGAT
66 CTGGATCAACAACATGCAGAGTGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGAC
*
17017986 CGGCTGAGCGCCCGCAGGCTCATTTCGTG
131 CGGCTGAGCGCCCGCACGCTCATTTCGTG
* *
17018015 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGTGAGGGTTGCAGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGCAGCAG
*
17018080 CTGGATCAACAACATGCAGAGTGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGAC
66 CTGGATCAACAACATGCAGAGTGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGAC
* *
17018145 CGGCTGAGCGCTCGCACGCTCGTTTCGTG
131 CGGCTGAGCGCCCGCACGCTCATTTCGTG
17018174 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17018212 CATATGGAGT
Statistics
Matches: 182, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 182 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGCAGCAG
CTGGATCAACAACATGCAGAGTGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGAC
CGGCTGAGCGCCCGCACGCTCATTTCGTG
Found at i:17018221 original size:26 final size:26
Alignment explanation
Indices: 17018185--17018235 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17018175 GTTGACTTAG
17018185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17018211 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17018236 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17019172 original size:158 final size:159
Alignment explanation
Indices: 17018893--17019259 Score: 445
Period size: 158 Copynumber: 2.3 Consensus size: 159
17018883 CCGCCCGTTC
* * * ** * *
17018893 GCTCGTTTCTTCGGTTGGCTTAGGCATACAAAGTTCA-TTCCTAGTCTAAGATTAGACCGGACTG
1 GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCC-AGTCTAAGATCAGACCGGACAG
* * *
17018957 AGGGTTGTGGTAATAGGATCAACAGCACGCAAAAGGGGACCCGATCGATCCCTGACTTATGCATC
65 AGGGTTGTAGCAATAGGATCAACAGCACGCAAAAGGGGACCCGATCGATCCCCGACTTATGCATC
* * *
17019022 TCACCCCTC-GGCCGGCTGAGCGCCCGCAT
130 CCACCCCTCTGGCCGACTGAACGCCCGCAT
* * * *
17019051 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTACGATCAGATCTGACAGA
1 GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACAGA
* * * * *
17019116 GGGTTGTAGCAGCT-GGATCAATAGCATGC-AGAGTGGGACCCGATCGATCCCCGACTTGTGCAT
66 GGGTTGTAGCA-ATAGGATCAACAGCACGCAAAAG-GGGACCCGATCGATCCCCGACTTATGCAT
* *
17019179 CCCGCCCTTCTGGCCGACTGAACGCCCGCAT
129 CCCACCCCTCTGGCCGACTGAACGCCCGCAT
* *
17019210 GCTCGTTTCGTAGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAG
17019260 CATACGGAGT
Statistics
Matches: 178, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
157 3 0.02
158 106 0.60
159 69 0.39
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.26
Consensus pattern (159 bp):
GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACAGA
GGGTTGTAGCAATAGGATCAACAGCACGCAAAAGGGGACCCGATCGATCCCCGACTTATGCATCC
CACCCCTCTGGCCGACTGAACGCCCGCAT
Found at i:17019262 original size:26 final size:26
Alignment explanation
Indices: 17019233--17019285 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17019223 GTTGACTTTG
17019233 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17019259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17019285 G
1 G
17019286 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17020156 original size:25 final size:26
Alignment explanation
Indices: 17020121--17020172 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
17020111 GTTGACTTAG
17020121 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17020147 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17020172 G
1 G
17020173 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 19 0.76
26 5 0.20
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17020996 original size:159 final size:159
Alignment explanation
Indices: 17020728--17021077 Score: 504
Period size: 159 Copynumber: 2.2 Consensus size: 159
17020718 CGTCGATTTT
* *
17020728 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAAACCGAGGGTTGCGGCAGTAGGAT
** * *
17020793 CGGTAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTACGCATCCAGCCCCTCTGGTCGGCTG
66 CGACAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTACGCATCCAGCCCCTCTAGCCGGCTG
* * *
17020858 AGCGCCCGCATGCTTATTTCGTGGGTTGA
131 AACGCCCGCACGCTCATTTCGTGGGTTGA
* ** *
17020887 CTTAGGCATATGGAGTTCATTCCTAATCTAAGATCGGACCGGATCGAGGGTTGC-GCTAGTAGGA
1 CTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAAACCGAGGGTTGCGGC-AGTAGGA
* * * * *
17020951 TCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCATCCTGCCCCTCTAGCCGGCT
65 TCGACAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTACGCATCCAGCCCCTCTAGCCGGCT
*
17021016 GAACGCCCGCACGCTCATTTCGTTGGTTGA
130 GAACGCCCGCACGCTCATTTCGTGGGTTGA
*
17021046 CTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CTTAGGCATACGGAGTTCATTCCTAATCTAAG
17021078 CATATGAAGT
Statistics
Matches: 169, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
158 2 0.01
159 167 0.99
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAAACCGAGGGTTGCGGCAGTAGGAT
CGACAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTACGCATCCAGCCCCTCTAGCCGGCTG
AACGCCCGCACGCTCATTTCGTGGGTTGA
Found at i:17021967 original size:26 final size:26
Alignment explanation
Indices: 17021938--17021990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17021928 GATGACTTAG
* * *
17021938 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17021964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17021990 G
1 G
17021991 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17022680 original size:889 final size:887
Alignment explanation
Indices: 17020874--17031873 Score: 14316
Period size: 888 Copynumber: 12.5 Consensus size: 887
17020864 CGCATGCTTA
* * * * * *
17020874 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAATCTAAGATCGGACCGGA-TCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGT
* * * * * *
17020938 TGCG-CTAGTAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCATCCTGC
65 TACGAC-AGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * *
17021002 CCCTCTAGCCGGCTGAACGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATT
128 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
17021067 CCCAATCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGC
193 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGC
* **
17021132 ACATGCTGGGTTCGGGCATGTGCTGGCACCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAA
258 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAA
* *
17021197 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTTGTGCGCACATGATGTGC
323 CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* * *
17021261 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATA
387 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
17021326 CCCCCTTAATGAGCATTTTTTGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
452 CCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17021391 TGGGACAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTCGTGTTTTTAGCT-AAATTCTTGT
516 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
*
17021454 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAA
581 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* ** * *
17021519 TTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
646 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
17021584 CAATGAAACGTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAACGGCAT
711 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
17021649 TGGCATGGCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCATATCGATCCATAGCTTGCG
776 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17021714 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCG
841 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * *
17021761 TTTCATCGGTTGGCGTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * *
17021826 GCGACAGCAGGATCGACAGCAC-CTAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
66 ACGACAGCAGGATCGGCAGCACGC-AGAGGG-GACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
17021890 CCTCTTGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATGGAGTTTATTC
129 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
17021955 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACGGCAGCA
194 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCA
* * * ** *
17022020 CATGCTGGGCTTGGGCATGTGCCGTTGCC-TCATTTTTCTTCACCGGGACACCATCGCCGGAGAA
259 CATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGACACCATCGTCGGAGAA
* *
17022084 CCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGAGGCCGGGGGGATGTGCGCACATGATGTG
323 CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGG-GGCCGGGGGG-TGTGCGCACATGATGTG
* * *
17022149 CAATGGGTGCTGGTACTTGG-CCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTC
386 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17022213 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAAT
451 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17022278 GGGGACACTTTTTTCAAAAGGTCACAAAATCTAGTACACTTTGAGTTTTTAGCTGAATTTTTTGT
516 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
** * *
17022343 GCATGCCAACAAAAATACGCGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTTGAAAAAA
581 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* ** *
17022408 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAGACGAGTCGTCTTG
646 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
17022473 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
711 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
17022538 AGGCATGGCAAAAATAT-AATGATGTGCCTAAACCCATCTACCACCCTTTCGATCCACGGCTTGC
776 TGGCATGGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17022602 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGGCCGCCCGCTCG
840 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * **
17022650 TTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATGA-ACCGAACCAAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGT
* * **
17022714 TATGACAGCA-GATCGACAGCACGCAGA-GGG----G---GA--CCCGGCTTGCGCATCCTACCC
65 TACGACAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
17022768 CTCTGGCCGGCTGAACGGCCGCACGTTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
17022833 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTACGGCAGTA
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCA
* * ** * *
17022897 AATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGACACCATTGCCGGAGAAC
259 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAAC
* * * * * * *
17022962 CTGACCGACAGCATTGGGGTTCTGATGATCGAGGTGGCTGGGGGGTGTGCGCACATGATATGCAA
324 CTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
17023027 TCGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACC
389 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
17023092 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
454 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
17023157 GACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AACTTTTTTTGTG
519 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTGTG
* *
17023221 CATGCCAAAAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
582 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* ** *
17023286 TTTAAAAAATCTCGAACCATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
647 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
17023351 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGACATT
712 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
17023416 GGCATGACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
777 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
17023481 ATCCCACCTCTCTGGGCGGCGTAGTGCCCGCCCGCCCGCTCGCTCG
842 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * *
17023527 TTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * * * * * *
17023592 ACGATAGTAGGATCGGTAGCACGCAAAAAGGGACCCGATCGATCCTCGACTTACGTATCCCGCCC
66 ACGACAGCAGGATCGGCAGCACGC-AGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* *
17023657 CTC-GGCCGGTTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * **
17023721 CTGCCTAAGCACACGGAGTTCATTCACAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* ** * * * *
17023786 ATGCTGGGCTCGAGCATGTGCTGGTGTTGTATTTTTCTTCGCCAGGACACCATCATCGAAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * * * * ** * * * *
17023851 TGACTGGCTGTATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCAAATGATGTGCGGT
325 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
17023916 GGGTGCTAGTACTTGACCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
390 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17023981 CCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGG
455 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17024046 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
520 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA
* * * *
17024111 GGCCAACAAAAATACAAGGATCACGTATACCAAGTTTCGGGTCC-AAACTTCTTCTGAAAAAATT
584 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATT
* * *
17024175 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCC
648 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
17024240 CTGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAAAAAAATGGCATTG
713 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17024305 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
778 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** *
17024370 TCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCATCCGCTCA
843 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * *
17024414 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGACTGAGAGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
** * * * * * *
17024479 ACGGTAGCTGGATCGGTAGCATGCAGAGTGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCC
66 ACGACAGCAGGATCGGCAGCACGCAGAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
*
17024544 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCT
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
17024609 CAGTCTAAG-AT-C--AG---A-T--C-G----A-A-C---T------GAGGGTTGCAGCAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* ** *
17024648 ATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGACACCATCGTCGGAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * * *
17024713 TGGCCGGA-GGCATTGGGGTT-TCAACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTACG
325 TGACC-GACGGCATTGGGGTTCT-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
17024776 ATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACAC
388 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
17024840 CCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
453 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
17024905 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
518 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
* * * *
17024970 CATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCTGAAAAAAT
582 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * *
17025035 TTTAAAAAATCTCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
647 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
17025100 CATGAAACTTCACATGAATGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGCCATT
712 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
17025165 GGGATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGC
777 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * *
17025230 ATCCCGCCTCTCTGGTTGACGTTGTG-CCGCCTGCCCGCCCGCTCA
842 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17025275 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* ** * * * *
17025340 GCGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCAGCCC
66 ACGACAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
17025405 CTCTGGTCGGCTGAGCGCCTGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
17025470 CAATCT----A-A--G-G-----T--C-G-----GA-C---T-GGATCGAGGGTTGCGGCAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* * * *
17025509 ATGCTGGGTTCGGGCATGTGCTGGTGTCGTATTTTTCTCCGTCAGGACACCATCGTCGGAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * * * * * *
17025574 TGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTCAGGGGGTGTGCGTACATGATATGCGAT
325 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
17025639 GGGTGGTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCGAACCTCAAGAACTCACACCC
390 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** * *
17025704 CCTTAAAGAGCATTTTTTGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATTGG
455 CCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * * *
17025769 GAGAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTTGTGTTTTTACCTAAATTGTTTTGTGC
519 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGC
* *
17025833 ATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATT
583 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* ** * * * *
17025898 TTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTCCC
648 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
17025963 ATGAAACGTCACATGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCAGAAAAATGGCATTG
713 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17026028 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCA
778 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
17026093 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGTTCACCCGCCCGCTCA
843 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17026138 TTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAATCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * ** * *
17026203 GCGACAGCAGGATCGACAGCACCCAGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCC
66 ACGACAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* *** * * * * * * *
17026268 CTCTTGCTAACTTAACGCCCGCACGCTTGTTTCGTAGGATGACTTAGGCATACAGAGTTTATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * ** **
17026333 TAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTATGGCAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* *
17026398 ATGCTGGGCTTGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGACACCATCATCGGAGAAC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGACACCATCGTCGGAGAAC
* * * *
17026462 CTAACC-AGCGGCATTGGTGTTCTGGCGATCGGGGGGGGCTGGGGGGGTGTGCGCACATGATGTG
324 CTGACCGA-CGGCATTGGGGTTCTGACGATC-GGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
*
17026526 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
386 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
17026591 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTATCAGTAGCAATTAAAGTGTCTGAAAT
451 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17026656 GGGGACACTTTTTTTAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
516 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * *
17026721 GCATGCCAACAAAAATACACGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAA
581 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
** ** *
17026786 TTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
646 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
17026851 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
711 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * * * *
17026916 AGGCAGGGAAAAAATATAAAGATGTGCCTAAACCCATCTACCACTCTTTCGATCCACGGCTTGCA
776 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** **
17026981 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCAACCGTTCGCTCG
841 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * *
17027028 TTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * **
17027093 ACGACAGTAGGATCGACAGCACGCAGA-GGG----G---GA--CCCGGCTTGCGCATCCTACCCC
66 ACGACAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * * ***
17027148 TCTGGCCGGCTGAGCGTCCGCACGTTCGTTTCATGGGTTGACTTAGATTTACGGAGTTCATTCCC
131 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
17027213 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTACGACAGTAA
196 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAC
* * * * *
17027277 ATGCTGGGCTCGAGCATGTGATGGTGTCGTATTTTTCTTCATCGGGACACCATCGCCGGAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * ** *
17027342 TGACCGACAGCATTGGGGTTCTGATGATCGGGGTGGTCGGGGGAGGGGGTGTGCGCACATGATAT
325 TGACCGACGGCATTGGGGTTCTGACGATC-GGG-GG--GGCCG-GGGGGTGTGCGCACATGATGT
* *
17027407 GCGATGGGTGCTGGTACTTGGCCTTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
385 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17027472 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
450 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17027537 TGGGGACACTTCTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTGTTT
515 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT-TTT
**
17027602 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCCCAACTCCTTCTGAAA
578 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * *
17027667 AAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAATACGGGTCGTC
643 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
17027732 TTGCCATTAAACTTCACATGAAGGCATAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
708 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
17027797 CATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTT
773 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
17027862 GTGCATCCCGTCTCTCTAACCGACGTAGTCCCCGCCCGCCCACCCGCTCG
838 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17027912 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * *
17027977 GCGGCAGCAGGATCGGCAACACACAGAGGGGTACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
66 ACGACAGCAGGATCGGCAGCACGCAGAGGGG-ACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
17028042 CTCTGGCCGGCTGAACGCCCGCACACTCGTTCCGTGTGTTGACTTAGGCATACGGAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * **
17028107 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCAACAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
*
17028172 ATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * ** * * *
17028237 TGCCCGACGACATTGGGGTTCCAACGATCGGGAGGGCTGGGGGGTGTGCGCAAATGATGTGCGAT
325 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
17028302 GGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCCTCAATCCTCAAGAACTCAGACCC
390 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17028367 CCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
455 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17028432 ACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTT-GCTGAATTGTTTTGTGC
520 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATT-TTTTGTGC
* * *
17028496 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCTAAAACTCTTTCTG-AAAAATT
583 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * * *
17028560 TTAAAAAATTCAGAACCACAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
648 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
17028625 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCAATG
713 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17028690 GCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACCGCTTGCGCA
778 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
17028755 TCCCACCTCTCTGGCTGACATAAT----GCCCACCCGCCCGCTCG
843 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17028796 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGA-TCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGT
* * * * * * *
17028860 TACGACAACAGCATCGGTAGCACGTA-AGGGGAACCCGACCAATCCCCGACTTGCGCATCCCGCC
65 TACGACAGCAGGATCGGCAGCACGCAGAGGGG-ACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* * * * ** *
17028924 CCT-TGGCCAGCTGAGCGTCCACACGCTCGTTTCGTGGGTTGACTTAGGCAAATAGAATTCATTC
129 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
17028988 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCA
194 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCA
* * * * * *
17029053 CATGCCGGACTTGAGCACGTGCTGGTGCCGTATTTTTCTTCGTCGAGACACCATCGCTGGAGCAT
259 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCAT--C----G---
* * * *
17029118 CATCGGAGAACCTGACC-AGCGACATTGAGATT-TCGATGATCGGGGGGGCCGGGGGGGTGTGCG
315 --TCGGAGAACCTGACCGA-CGGCATTGGGGTTCT-GACGATCGGGGGGGCC-GGGGGGTGTGCG
* * * *
17029181 CAAATGATGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCT
375 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
17029246 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
440 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17029311 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACT
505 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
17029376 GAATTTTTTTGTTCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTC
570 GAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
17029441 CTTCTGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAA
634 CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
17029506 CGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCA
699 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
17029571 TAAAAATGGCATTGGCACGGAAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCGTATCGAT
764 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17029636 CCACGGCTTGCGCATCCCGCCTCTCTTGCCGACGTAGTGCCCGCCCGCCCGCCCACTCG
829 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17029695 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGA-TCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGT
** * * * * * * *
17029759 TACGGTAGCAGGATCGACAGCACGTAGAAAGGGACCCGATTGATCTCTGGCTTGCGCATCCCACC
65 TACGACAGCAGGATCGGCAGCACGCAG-AGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* *
17029824 CCTCTGGCCGGTTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
129 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* ** * *
17029889 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGTTCGAGGGTTACGACAGCA
194 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCA
* * *
17029954 CATACTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGACACCATCGTCGAAGCAT
259 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTC---G---
* * *
17030019 CATCGAAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGTGC
318 ----G-AGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGG-GTGTGCGC
* *
17030084 TCATGATGTACGATGGGTGCTGGTACTTGGTCCC-TATATTGGCCCCCTATCCCTCATCAAACCT
376 ACATGATGTGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17030148 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAA
440 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17030213 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTATTTTTTAGCT
505 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
**
17030278 GAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACAACTACCAAGTTTGGGGCCAAAACTC
570 GAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
17030343 CTTTTGAAAAAATTTTAAAATATCCCGAACCGCAGAAAGTTTCAAAAGTCATGAAAAATAAAAAA
634 CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
17030408 CGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
699 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
17030473 TAAAAATAGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
764 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
17030538 CCACGACTTGCGCATCCCGCCTATC-AGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTG
829 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
** * *
17030596 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * *
17030661 ACGGCAGCAGGATCGGCAGCACACAGAAGAGTACCCGATCGATCCCCGGTTTGCGCATCCCGCCC
66 ACGACAGCAGGATCGGCAGCACGCAG-AGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
17030726 CTCTGGCCGACTGAACGCCCGCACGCTCGTTCCGT--G-TG---T-----T---GA---C-TT--
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
17030771 -AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACGGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* ** * * ** *
17030830 ATACTGGGCTCAAGCATATGCTGGTACCGTATTTTTCTTCACCGGGACACCATCGCCGGAGAACC
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * * ** *
17030895 TGACCGATGGTATTAGGGTTCTGGTGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGCGAT
325 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
17030960 GGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
390 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
17031025 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAACCATTAAAATGTCTGAAATGGGG
455 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
17031090 ATACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGTTGAATGTTTTTGTGCA
520 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCA
*
17031155 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTT
584 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
*
17031220 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCA
649 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
17031285 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGG
714 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
17031350 CACGGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCTTACCGATCCATGGCTTGTGCAT
779 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
17031415 CCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCG
844 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * *
17031459 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * * *
17031524 GCTACAGTAGTATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTACGCATCCCGCCC
66 ACGACAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* ** *
17031589 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
17031654 CAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAC
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* ** * *
17031719 ATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTTCGTCGGGACACCATCGTCGGAGAACA
260 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACC
* * * * * *
17031784 TGACCGACGGCATTGGAGTTCCGACAATCGGGTGGGCCGGAGGGGTGTACACACATGATGTGCGA
325 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGA
*
17031849 TGGGTGCTGGTATTTGGCCACTTAT
389 TGGGTGCTGGTACTTGGCC-CTTAT
17031874 TAAATTTATT
Statistics
Matches: 8861, Mismatches: 1070, Indels: 360
0.86 0.10 0.03
Matches are distributed among these distances:
856 6 0.00
857 1 0.00
858 1 0.00
860 6 0.00
861 747 0.08
862 953 0.11
863 410 0.05
864 38 0.00
865 2 0.00
866 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
871 2 0.00
872 2 0.00
873 1 0.00
874 1 0.00
875 138 0.02
876 168 0.02
877 568 0.06
878 18 0.00
879 205 0.02
880 11 0.00
881 7 0.00
882 354 0.04
883 42 0.00
884 456 0.05
885 4 0.00
886 9 0.00
887 494 0.06
888 1031 0.12
889 708 0.08
890 649 0.07
891 149 0.02
892 1 0.00
893 43 0.00
894 256 0.03
895 421 0.05
896 1 0.00
898 2 0.00
899 95 0.01
900 29 0.00
901 376 0.04
902 447 0.05
903 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
ACGACAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCGGAGAACCT
GACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
Found at i:17022845 original size:26 final size:26
Alignment explanation
Indices: 17022815--17022867 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17022805 GTTGACTTAG
17022815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17022841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17022867 G
1 G
17022868 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17026344 original size:26 final size:26
Alignment explanation
Indices: 17026315--17026367 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026305 GATGACTTAG
* *
17026315 GCATAC-AGAGTTTATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17026341 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17026367 G
1 G
17026368 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17027227 original size:26 final size:26
Alignment explanation
Indices: 17027197--17027246 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17027187 GACTTAGATT
17027197 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
17027223 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17027247 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17028118 original size:26 final size:26
Alignment explanation
Indices: 17028089--17028141 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17028079 GTTGACTTAG
17028089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17028115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17028141 G
1 G
17028142 ATTGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17029908 original size:26 final size:26
Alignment explanation
Indices: 17029872--17029924 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17029862 GTTGACTTAG
17029872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17029898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17029924 G
1 G
17029925 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17032550 original size:22 final size:22
Alignment explanation
Indices: 17032525--17032574 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
17032515 ATATGGTTTA
17032525 TATTATAAATATA-TATAATAT-T
1 TATTATAAAT-TACTATAAT-TGT
*
17032547 TATTTTAAATTACTATAATTGT
1 TATTATAAATTACTATAATTGT
17032569 TATTAT
1 TATTAT
17032575 CATACCTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTATAAATTACTATAATTGT
Found at i:17032969 original size:16 final size:16
Alignment explanation
Indices: 17032948--17032984 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
17032938 TTAATTTTAC
*
17032948 TATATAAATAATTATT
1 TATATAAATAACTATT
17032964 TATATAAATAACTATT
1 TATATAAATAACTATT
*
17032980 AATAT
1 TATAT
17032985 TTATTATCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
TATATAAATAACTATT
Found at i:17032988 original size:22 final size:21
Alignment explanation
Indices: 17032955--17033012 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
17032945 TACTATATAA
17032955 ATAATTATTTA-TATAAATAACT
1 ATAA-TATTTATTAT-AATAACT
**
17032977 ATTAATATTTATTATCCTAACT
1 A-TAATATTTATTATAATAACT
17032999 ATAATATTTATTAT
1 ATAATATTTATTAT
17033013 TATATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 13 0.41
22 13 0.41
23 6 0.19
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATATTTATTATAATAACT
Found at i:17033005 original size:21 final size:22
Alignment explanation
Indices: 17032972--17033012 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
17032962 TTTATATAAA
17032972 TAACTATTAATATTTATTATCC
1 TAACTATTAATATTTATTATCC
17032994 TAACTA-TAATATTTATTAT
1 TAACTATTAATATTTATTAT
17033013 TATATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
TAACTATTAATATTTATTATCC
Found at i:17033069 original size:20 final size:18
Alignment explanation
Indices: 17033028--17033085 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 18
17033018 AAATTAGCAA
17033028 ATAATATAAATTATAATT
1 ATAATATAAATTATAATT
17033046 ATAATATAACTATT-TAATTT
1 ATAATATAA--ATTATAA-TT
*
17033066 ATAATA-ACATTATAAATT
1 ATAATATAAATTAT-AATT
17033084 AT
1 AT
17033086 TTATAACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
17 3 0.09
18 14 0.41
19 6 0.18
20 11 0.32
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATATAAATTATAATT
Found at i:17033174 original size:15 final size:15
Alignment explanation
Indices: 17033154--17033185 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
17033144 ATATTAGTTA
*
17033154 TAATATCATTTAGAT
1 TAATATCATTTAAAT
17033169 TAATATCATTTAAAT
1 TAATATCATTTAAAT
17033184 TA
1 TA
17033186 TAATATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (15 bp):
TAATATCATTTAAAT
Found at i:17033203 original size:32 final size:32
Alignment explanation
Indices: 17033151--17033253 Score: 90
Period size: 32 Copynumber: 3.2 Consensus size: 32
17033141 TAAATATTAG
* *
17033151 TTATAATATCAT-TTAGATTAATATCATTTAAA
1 TTATAATATTATATTATATTAATAT-ATTTAAA
17033183 TTATAATATT-TATTATATTAA-A-ATTATAAAA
1 TTATAATATTATATTATATTAATATATT-T-AAA
* *
17033214 TTATAAAATTATATTATTTTAATA-ATTTATAA
1 TTATAATATTATATTATATTAATATATTTA-AA
17033246 TTTATAAT
1 -TTATAAT
17033254 TAATTATTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
29 3 0.05
30 1 0.02
31 15 0.25
32 30 0.51
33 10 0.17
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (32 bp):
TTATAATATTATATTATATTAATATATTTAAA
Found at i:17033214 original size:8 final size:8
Alignment explanation
Indices: 17033201--17033226 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
17033191 TTTATTATAT
17033201 TAAAATTA
1 TAAAATTA
17033209 TAAAATTA
1 TAAAATTA
17033217 TAAAATTA
1 TAAAATTA
17033225 TA
1 TA
17033227 TTATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAAAATTA
Found at i:17034505 original size:21 final size:21
Alignment explanation
Indices: 17034481--17034609 Score: 73
Period size: 23 Copynumber: 5.6 Consensus size: 21
17034471 AACTTTAATT
17034481 TTATATATATTTAATATATTA
1 TTATATATATTTAATATATTA
*
17034502 TTATATATATTTATAATAGTGAAATAA
1 TTATATATA-TT-TAATA-T---ATTA
*
17034529 TAATATATATTTAATAAATATTA
1 TTATATATATTTAAT--ATATTA
*
17034552 TTAAATATATTTATAATATATTTA
1 TTATATATA-TT-TAATATA-TTA
* * *
17034576 ATAAATATTATTAAATATA-T-
1 TTATATA-TATTTAATATATTA
17034596 TTATAATATATTTA
1 TTAT-ATATATTTA
17034610 TAAATTAAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 27
0.70 0.08 0.22
Matches are distributed among these distances:
20 7 0.08
21 13 0.15
22 2 0.02
23 24 0.28
24 14 0.16
25 10 0.12
26 3 0.04
27 12 0.14
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TTATATATATTTAATATATTA
Done.