Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 90 of 160
Found at i:17034575 original size:34 final size:34
Alignment explanation
Indices: 17034533--17034614 Score: 157
Period size: 34 Copynumber: 2.4 Consensus size: 34
17034523 AAATAATAAT
17034533 ATATATTTAATAAATATTATTAAATATATTTATA
1 ATATATTTAATAAATATTATTAAATATATTTATA
17034567 ATATATTTAATAAATATTATTAAATATATTTATA
1 ATATATTTAATAAATATTATTAAATATATTTATA
17034601 ATATATTT-ATAAAT
1 ATATATTTAATAAAT
17034615 TAAATGATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 6 0.12
34 42 0.88
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (34 bp):
ATATATTTAATAAATATTATTAAATATATTTATA
Found at i:17034610 original size:11 final size:11
Alignment explanation
Indices: 17034480--17034612 Score: 82
Period size: 11 Copynumber: 11.6 Consensus size: 11
17034470 TAACTTTAAT
17034480 TTTAT-ATATA
1 TTTATAATATA
17034490 -TT-TAATATA
1 TTTATAATATA
17034499 -TTATTATATATA
1 TTTA-TA-ATATA
17034511 TTTATAATAGTGAA
1 TTTATAATA-T--A
* *
17034525 ATAATAATATA
1 TTTATAATATA
*
17034536 TATT-TAATAAA
1 T-TTATAATATA
17034547 TATTATTAAATATA
1 T-TTA-T-AATATA
17034561 TTTATAATATA
1 TTTATAATATA
17034572 TTTAATAA-ATA
1 TTT-ATAATATA
17034583 -TTATTAAATATA
1 TTTA-T-AATATA
17034595 TTTATAATATA
1 TTTATAATATA
17034606 TTTATAA
1 TTTATAA
17034613 ATTAAATGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 33
0.72 0.04 0.24
Matches are distributed among these distances:
8 1 0.01
9 10 0.10
10 3 0.03
11 43 0.43
12 18 0.18
13 11 0.11
14 14 0.14
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (11 bp):
TTTATAATATA
Found at i:17034613 original size:23 final size:23
Alignment explanation
Indices: 17034533--17034614 Score: 93
Period size: 23 Copynumber: 3.6 Consensus size: 23
17034523 AAATAATAAT
17034533 ATATATTTAATAAATAT-TATTA-A
1 ATATATTT-ATAAATATAT-TTATA
17034556 ATATATTTAT-AATATATTTAATA
1 ATATATTTATAAATATATTT-ATA
17034579 A-ATA-TTATTAAATATATTTATA
1 ATATATTTA-TAAATATATTTATA
17034601 ATATATTTATAAAT
1 ATATATTTATAAAT
17034615 TAAATGATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
21 10 0.19
22 12 0.23
23 27 0.52
24 3 0.06
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATATTTATAAATATATTTATA
Found at i:17035412 original size:19 final size:20
Alignment explanation
Indices: 17035375--17035435 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
17035365 TATTTATATT
17035375 AATTACTTATTATTAATTTA
1 AATTACTTATTATTAATTTA
*
17035395 AATT-CTTATTATATATTTATA
1 AATTACTTATTAT-TAATT-TA
17035416 TTAATTACTTATTA-TAATTT
1 --AATTACTTATTATTAATTT
17035436 TTAATAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 8 0.24
20 8 0.24
21 3 0.09
22 4 0.12
23 4 0.12
24 7 0.21
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
AATTACTTATTATTAATTTA
Found at i:17035426 original size:24 final size:24
Alignment explanation
Indices: 17035364--17035435 Score: 93
Period size: 23 Copynumber: 3.2 Consensus size: 24
17035354 ATTAAAACTA
17035364 ATATTTATATTAATTACTTATTAT
1 ATATTTATATTAATTACTTATTAT
*
17035388 -TAATT-TA--AATT-CTTATTAT
1 ATATTTATATTAATTACTTATTAT
17035407 ATATTTATATTAATTACTTATTAT
1 ATATTTATATTAATTACTTATTAT
17035431 A-ATTT
1 ATATTT
17035436 TTAATAACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
19 8 0.20
20 8 0.20
21 2 0.05
22 2 0.05
23 12 0.29
24 9 0.22
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
ATATTTATATTAATTACTTATTAT
Found at i:17036116 original size:6 final size:6
Alignment explanation
Indices: 17036105--17036144 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
17036095 TCAATATTGT
* *
17036105 TTAATA TTAATA CTAAT- TTAATA TTGATA TTAATA TTAAT
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAAT
17036145 CTTTTTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:17036126 original size:17 final size:17
Alignment explanation
Indices: 17036104--17036144 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
17036094 ATCAATATTG
17036104 TTTAATATTAATACTAA
1 TTTAATATTAATACTAA
* *
17036121 TTTAATATTGATATTAA
1 TTTAATATTAATACTAA
17036138 TATTAAT
1 T-TTAAT
17036145 CTTTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATATTAATACTAA
Found at i:17036457 original size:17 final size:17
Alignment explanation
Indices: 17036432--17036482 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
17036422 TTAATTATTG
17036432 ATTTAAAATATTTATAAT
1 ATTT-AAATATTTATAAT
* *
17036450 ATTTAAATAATAATAAT
1 ATTTAAATATTTATAAT
*
17036467 ATTTAATTATTATATA
1 ATTTAAATATT-TATA
17036483 TAGAATTAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 20 0.74
18 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAAATATTTATAAT
Found at i:17037632 original size:181 final size:181
Alignment explanation
Indices: 17037305--17042606 Score: 3102
Period size: 181 Copynumber: 29.7 Consensus size: 181
17037295 TTTAAATTAT
* * * *
17037305 TTACTTATTAAATTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGTTTGTATAAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * *
17037370 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGACAATTGTTTAAAT
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAAT
* ** * *
17037435 AGTCGTAACTATTTGAATTTCTTCAATAAATAAATTTATTTCTTTTAA-CGC
131 AGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTT-TTTAAATCTC
* * * * * * *
17037486 GTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTAATTTATTTAGGATAAGCTTTTATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* **
17037551 CTAAAACAATTGTTTTATGTTAAAACAAAAGGTCATAATGATTTTAAATCA-ATAATTATTCAAA
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAAT-AGATAATTATTCAAA
** * * * *
17037615 TAACCATAACAATTTGAACTTG-CTCGATAAATAAATTTATTTTTTCAAATCTT
130 TAGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTT-AAATCTC
* * * * * * *
17037668 TTGCTTATTAATTTTTCAAATGTTAATAAATTTGGATTATTTTATTCCA-AATAAACTTGTA-AG
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TAGAATAAGCTTGTATA-
* * * * * * * *
17037731 ATA-TGAAACAAATATTTTATGACAAAA-AAAAGATCTTAA-CATTTGAGATTA-ATAATTGTTC
64 A-ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTA-AATAGATAATTATTC
* * * * * *
17037792 AAATAGTCATAACTATTTGAATTGGTTTAGTAAACATATTTATTTTTTAAATCTA
127 AAATAGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * * *
17037847 TTACTTATTAATTTTTCAAATATTAATAAATTAGTTTTGTTTTATTTCG-AT---CTTGTATAAT
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
** * * * * * * *
17037908 CAAAAATAATTATTTTATGACAAAACAAAAAAGTCGTAATGATTTGAAGTAGATAATCATTCAAA
66 CTGAAACAATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * * * * *
17037973 T-GGCGATAATTATTTTAACTGATTCAATAAATAGATTTATTTTTTAAATTTC
130 TAGTC-ATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * ** *
17038025 TTACTTATTAA-TTTAGAAAATATTAATAAATTAGTATTATTTTATTCCA-TCTAAGCTTGTATT
1 TTACTTATTAATTTTTG-AAATATTAATAAATTAGTATTATTTTATT-TAGAATAAGCTTGTATA
* * * * *
17038088 AATTGAAATAATTGTTTTATGACAAATCAAAAGGTTATAACGATTTTAAATAGATAATTATTCAA
64 AACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* * * * *
17038153 ATAGTAATAACTATTTAAATTTATTCAGTAAATAGATTTATTTTTTTAAATCTC
129 ATAGTCATAACTATTTGAATTGATTCAATAAATAAATTTA-TTTTTTAAATCTC
* * * * *
17038207 TTTCTTATTAATTTTTTG-AATGTTAATAAATTAATATTAATTTATTTTGAATAAGCTTGTATAA
1 TTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAA
* * * * * * * * * *
17038271 ATTGAAACAATTGTCTTATGACTAATCAAAAAGTTAGAAAGATTTAAAATAGATAATTATTCTAA
65 ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * * * * *
17038336 TAGTCTTAACCAATTGAACTGATTCGATAAA-AAAATTATTTTTTAAA--TC
130 TAGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * **
17038385 -T-CTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTA---ATCA-AA------ATAAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
** * * * * * * *** *
17038438 ---AAACAATTGCCTTACGATAAAGA-AAAA-GT-AAAACGATTTGAAATAAATAACCGTTCATA
66 CTGAAACAATTGTTTTATGACAAA-ACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * ** * *
17038497 TAGTCTTAACTATTTGAATTGGTT-AGGAAATTAGATTTA-TTTTTAAATTTTC
130 TAGTCATAACTATTTGAATTGATTCAATAAA-TAAATTTATTTTTTAAA-TCTC
** * * * * * ** ** * *
17038549 TTTGTTATTAAGTTTTGGACTATTATTAAATGAGTATTATTTTATTCCGAATAAAATAGTATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * *** * * * *
17038614 CAT-AACCAATTGTTTGATGACAAAATTTAAGGTTATAATGATTTGAAATAAATAGTTATTCAAA
66 C-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * *** * * *
17038678 TAGTCAAAACTATTTGAAAT-ATTTTGGTAAACAAATTTACTTTTTAAATCTT
130 TAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * * * * * * *
17038730 TTACTGATTAGTTTTCT-AAATATTAAGAAATTAGAATTATTTTATTTCGAACAAACTTATATTA
1 TTACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAA
** * * * * * ** * * *
17038794 ACAAAAACAATTATTTTATAACAAAACAAAAAGTAATAAAGATTTGGAATAGACACTTTTTCAAA
65 ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * * * * ** * *
17038859 TAGTTATAATTATTTAAACTGTTTTGATAAATAGAA-TTATTTTCTAAATCTT
130 TAGTCATAACTATTTGAATTGATTCAATAAATA-AATTTATTTTTTAAATCTC
* * * * * * * *
17038911 TTATTTATAAATTTTTAAAATATTAATAAATTAGTTTTATTCTATTTCGAATAAGCTTGTATGAG
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * * * ** * * * * *
17038976 CTAAAATAAATGTTTTATGACAAAGCAAAA-GTCATAACAATTTCAAATAAAAAATTTGTTCATA
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA-TTATTCAAA
* * * ** *
17039040 TAGTCTTAACTGTTTGAACT-AGTTTGACAAATAAATTTATTTTTTAAATCTC
130 TAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * * *
17039092 TTAATTATTAATTTTT-AGAATATTACTAAATTAGTATTATTTTA-TTACAAATAAGCATGTATG
1 TTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTA-GAATAAGCTTGTATA
* * * ** * *
17039155 AA-TAGAAACAATTGTTTTATGATAGAACAAAAGGTTATAACAATTTAAAATAGATAATTGTTCA
64 AACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCA
* *** * *
17039219 AATAGTCATAACTATTTGAACT-AGTTTGGTAAATAGATTTAATTTTTAAA--TC
128 AATAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * * *
17039271 -T-CTTATTAATTCTTGAAATATTAGTAAATTAGTATTATTTTATTTCGAATAAGCATGTAT--G
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * * * ** * * * *
17039332 TTGAAAAACAATTGTTTTATGATAAAATAAAAGGTAATAACAATTTGAAATAGATAGTTGTCCAA
66 CTG--AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* * * * *
17039397 AT-GACCATAATTATTTGAACAT-ATTCAGTAAACAAATTTATTTTTTAAATCTC
129 ATAG-TCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * ** * * *
17039450 TTACTTGTTAACTTTTGAAATATTAATAAAGGAGTATTCTTTTTTTTTAAGAA-AAGCTTTTAT-
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATT-ATTTTATTT-AGAATAAGCTTGTATA
* * * ** * * *
17039513 GAGTCAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTTAAAAATATAACTATTCA
64 AACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCA
* *
17039578 AATAGTCATAACTATTTGAACTT-ATTCAGTAAACAAATTTATTTTTTCAAATCTC
128 AATAGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTT-AAATCTC
* * * *
17039633 TTGCTTATTAATTTTTTG-AATCTTAATAAATGAGTATTATTTTATTTCA-AATAAGCTTGTATG
1 TTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTT-AGAATAAGCTTGTATA
* * * * ** * * * *
17039696 AACTGAAACAATTGTTATATGACTAAAGAAAAGGTCAGAACAATTTGAAATAAATAATAATTCTA
64 AACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
** * * * * * * *
17039761 ATAGTTTTAATTATTTGAACTGGTTCGACAAACACATTTATTTTTTAAA--TC
129 ATAGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * ** * *
17039812 -T-CTTATTAA-TTTTAAGAATATTATTAAGTTAGTATTATTTTTATCCA-AATAAGCTAGTATG
1 TTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTA-TTTTATTTAGAATAAGCTTGTATA
* ** * * * * * *
17039873 ATCAAAAACAATTGTTTTATGACAAAAC-AAAGATCATAATGATTTGAGATTGATATTTGTTCAA
64 AACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* *** * * * *
17039937 ATAGTCATAACTA-TTGAACT-AGTT-TGGAAACAACTTTAGTTTTTAAATTTC
129 ATAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * * * * *
17039988 TTACTTATTAATTTTTGAAATATTAGTAAAGTAGTATTATTTTATTTTGGATAAGTTTTTATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * * ** * * *
17040053 TTGAAATAATTGTTTTATGACAAAACAAAACGTCATAACAACTTTAAATATATAATTGTTCAAAT
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAAT
* * *
17040118 AGTCA-AATCTATTTGAATTTG-TTCAGTAAAGAGATTTATTTTTTTAAATCTC
131 AGTCATAA-CTATTTGAA-TTGATTCAATAAATAAATTTA-TTTTTTAAATCTC
* * * * * *
17040170 TTGCTCATTAATTTTTTG-AATGTTAATAAATTAGTATTAATTTATTCT-GAATAAGCTTATATG
1 TTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATT-TAGAATAAGCTTGTATA
* * * * ** * * *
17040233 AACTGAAATAATTGTTTTATGACTAAAGAAAAGATCATAACAATTTGAAATAGATAATTGTTCTA
64 AACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* * * ** * *
17040298 ATAGTCTTAACTATTTAAACT-AGTTCAGCAAACATATTTATTTTTTAAATCTC
129 ATAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* *
17040351 TTACTTATTAATTTTTGGAATA-TAATTAAATTAGTATTATTTTAATCTA-AATAAGCTTGTAGT
1 TTACTTATTAATTTTTGAAATATTAA-TAAATTAGTATTATTTT-ATTTAGAATAAGCTTGTA-T
* * * * * * * * * *
17040414 AAA-AGAAACAATTATTTTATGATAAAA-TAAAGATCATAACGATTTGAGATAGATAATTGTACA
63 AAACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCA
* * *
17040477 AATAGTCATAACTATTTGAACT-ATTTCAGTAAATAAATTTAGTTTTTAAA--TC
128 AATAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * ** * *
17040529 -T-CTTATTAATTTTTAAAATATTAATAGATTAGTATTATTTT-TTTTGAATAATTTTGCATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
** * *
17040591 CAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAAT
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAAT
* * * * * * * *
17040656 -GAACATGATTATATAAACTTG-TTC-ATACACATATTTATTTTTTAAATCTC
131 AG-TCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * * * * * *
17040706 CTACCTACTAATTTTT-AGAATATTAATAAATTACTATTA-TCT-CTT--AATAAACTTGAAT-A
1 TTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAA
* * * * * * *
17040765 A---AAATAATTCTTTTATGACAAAAAAAAAGATCATAACT-ATTTGAAATAAATAATTAATCAA
65 ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTTAAATAGATAATTATTCAA
* * ** *** * *
17040826 ACAGTCATAACTATTTGAATTTGCTT-GGTAAACGGATTTATTTTTTAAGTCTT
129 ATAGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * * *
17040879 TTACTT-TTTATTTTTG------TAGT--ATTA-TATTA---T-TTCA-AATATGCTTGTATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * * * * * *
17040929 -TAGAAACTATTAG-TTTATGACCAAACAAAAGGTCATAACT-CTTTCAATTAGATAATTGTTTA
66 CT-GAAACAATT-GTTTTATGACAAAACAAAAGGTCATAA-TGATTTTAAATAGATAATTATTCA
* * ** *
17040991 AATAGTCATAACTATTTGAACATG-TT-AAGGAAATAGGTTTATTTTTTAAAT-TA
128 AATAGTCATAACTATTTGAA-TTGATTCAA-TAAATAAATTTATTTTTTAAATCTC
* * *
17041044 TTACTTATTAATTTTTGGAATATTAATAAATTTA-TATTATTTTATTT-GAAATAAGCTTGCATG
1 TTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTAG-AATAAGCTTGTATA
* * * * * * * * *
17041107 AACAGAAACAATTGTTTTATTAGAAAACAAAATGTCATAATGATTTGAAATATAAAATTGTTCAT
64 AACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* * ** * *
17041172 ATAGCCATAACT-TTCTAAAGTTG-TTTGATAAACAAATTCATTTTTTAAATCTC
129 ATAGTCATAACTATT-TGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
** * * * * * * *
17041225 TTACTCCTTAATTCTTGAAATGTTAATAAATTAGTGTTATTTTATTTCGAATAAGCCTATATGAA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
* * * * ** *
17041290 CTGATAGACTTGCTTTATGATGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAAT
66 CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAAT
* * * ** ** * * * *
17041355 ATTTATGACTATTTGAACTTG-TTCGGTAAGCATATTTATTTTTAAAATTTT
131 AGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* ** * * * * *
17041406 TTACTTATTAATTGTCAAAATATTAAGAAATTAATTTTATTTTAATTT-GAATAAGCATGTATGA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTAGAATAAGCTTGTATAA
* * ** * * * * *
17041470 A-TAAAAACAATTGTTTTATGATAAAACAAAAAATCGTAACGA-TTGAAATAAATAATTGTTCAA
65 ACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAA
* * ** * *
17041533 ATAGTCATAACAATTTAAACTT-ATTTGATAAGTAAATTTATTTTTTAAATCTT
129 ATAGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * *
17041586 TTACTTATTAATTATTTG-AATATTAATAAATTTGTTTTTATTTTAATT-GAAATAAGCTTGTAT
1 TTACTTATTAATT-TTTGAAATATTAATAAATTAG-TATTATTTTATTTAG-AATAAGCTTGTAT
* * * * ** * *
17041649 GAATA-T-AAAAAATTATTTTATGACAAAACAAAAAGTTATAGCGATTTGAAATAGGTAATTATT
63 -AA-ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATT
* * * *
17041712 CAAATAGTCATAACTCTTTGAACTTG-TTCGATAAACAAATTTAGTTTTTAAA--T-
126 CAAATAGTCATAACTATTTGAA-TTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * * *
17041765 AT-CTTATTAATTTTTGAAATATTAATAGATTAGAATTATGTTATTCCA-AATAAGCTTGTACT-
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TAGAATAAGCTTGTA-TA
* * * ** * * * *
17041827 AA-TAGAAACAATTATTTTCTGATAAAACAAAAACTCATAATGATTTGAAAAAGATTATTGTTCA
64 AACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCA
* * * * *** * * *
17041891 AATACTAATAACTATTTGCATTTATT-AGGCCAACAGATTCA-TTTTTAAAT-TC
128 AATAGTCATAACTATTTGAATTGATTCA-ATAAATAAATTTATTTTTTAAATCTC
* * * * * *
17041943 ATTACTTATTAA-TTTTCATAATATTAATAAATTAGCATTACTTTCTTTTGAATAAAAC-TGTAT
1 -TTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTAGAAT-AAGCTTGTAT
* * * * *
17042006 CAA-TAGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAAACAATTATTC
63 AAACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTC
* * * * * * *
17042070 AAATTGTTATAACTAGTTGAATTGGTTTAGTAAATAGATTTATTTTTTAAA--T-
127 AAATAGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
* * * * * * * *
17042122 AT-CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTCCAAAAAAAACTTATATGA
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TAGAATAAGCTTGTATAA
* * **
17042186 AC--AAAAATATTTTCTTTATGACAAAACAAAAGGTCATAATGATTAGAAATAGATAATTATTCA
65 ACTGAAACA-ATTGT-TTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCA
* * * * **** * *
17042249 TATAGCCTTAACTATTTGAAAT-AGTTTGGCAAACAAATTTATTTTTTAAATCTA
128 AATAGTCATAACTATTTGAATTGA-TTCAATAAATAAATTTATTTTTTAAATCTC
* * * * * * *
17042303 TTAGTTATT-ATTTTTCATAATATTATTATATTAGTATTATTTTATTTTGAATAAGCGTGTATGA
1 TTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAA
** * * * * ** * * * *
17042367 ACAAAAATAATTATTTTATGACAAAATAAAAGGTTATAACAATTTGAAATATACAATTATT-TAA
65 ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAA
* * * * * * *
17042431 TAGTCATAACTATTTAAACTGGTT-AGGTAAACAGATTTATTTTTTAAATTTC
130 TAGTCATAACTATTTGAATTGATTCA-ATAAATAAATTTATTTTTTAAATCTC
* * * * * * * *
17042483 CTACTCATTAATTTTTGAATTATTAA-AAATTAGTATTATTATATTTTGAATAGGC-T-CATACG
1 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATA-A
* * * *
17042545 A-TGAACAACAATTGTTTTATGTCAAAACAAAAGTTCATGATGATTTGAAATAGATAATTATT
65 ACTG-A-AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATT
17042607 TGAACTGATT
Statistics
Matches: 4024, Mismatches: 884, Indels: 428
0.75 0.17 0.08
Matches are distributed among these distances:
160 3 0.00
161 51 0.01
162 17 0.00
163 28 0.01
164 6 0.00
165 10 0.00
166 135 0.03
169 1 0.00
170 2 0.00
172 77 0.02
173 29 0.01
174 23 0.01
175 106 0.03
176 179 0.04
177 373 0.09
178 305 0.08
179 229 0.06
180 541 0.13
181 1113 0.28
182 729 0.18
183 58 0.01
184 9 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTAGAATAAGCTTGTATAAA
CTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAAT
AGTCATAACTATTTGAATTGATTCAATAAATAAATTTATTTTTTAAATCTC
Found at i:17038194 original size:539 final size:537
Alignment explanation
Indices: 17037293--17045741 Score: 5161
Period size: 539 Copynumber: 15.8 Consensus size: 537
17037283 ATAGATTGAC
* *
17037293 TTTTTAAAT-TATTTACTTATTAAATTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAAT
1 TTTTTAAATCTA-TTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * ** * * * *
17037357 AAGTTTGTAT-AAACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAG
65 -A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAG
* * * * * * * *
17037421 ACAATTGTTTAAATAGTCGTAACTATTTGAATTTCTTCAATAAATAAATTTATTTCTTTTAA-CG
128 ATAATTGTTCAAATAGTCATAACTATTTGAA-CTGTTCAATAAATAGATTTATTT-TTTAAATCT
* * * * * * *
17037485 CGTGCTTATTAATTTTTG-AAATATTAAGAAATTAGTATTAATTTATTTAGGATAAGCTTTTATG
191 CTTACTTATTAA-TTTTGAAAATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTATG
* *
17037549 AACTAAAACAATTGTTTTATGTTA-AAACAAAAGGTCATAATGATTTTAAATCA-ATAATTATTC
254 AACTGAAACAATTGTTTTATG--ACAAACAAAAGGTCATAATGATTTGAAAT-AGATAATTATTC
** * ** * * * *
17037612 AAATAACCATAACAATTTGAACTTGCTCGATAAATAAATTTATTTTTTCAAATCTTTTGCTTATT
316 AAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTT-AAATCTTTTACTTATT
* * * * * * * *
17037677 AATTTTTCAAATGTTAATAAATTTGGATTATTTTATTCCAAATAAACTTGTAAGATATGAAACAA
380 AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGA-ATGAAACAA
* * *
17037742 ATATTTTATGACAAAA-AAAAGATCTTAACATTTGAGATTA-ATAATTGTTCAAATAGTCATAAC
444 TTGTTTTATGACAAAACAAAAGATCATAACATTTGAGATTAGATAATTGTTCAAATAGTCATAAC
* *
17037805 TATTTGAATTGGTTTAGTAAACATATTTAT
509 TATTTGAACT-GTTTAGTAAACAAATTTAT
* * *
17037835 TTTTTAAATCTATTACTTATTAATTTTTCAAATATTAATAAATTAGTTTTGTTTTATTTCG-AT-
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * *
17037898 CTTGTAT-AATCAAAAATAATTATTTTATGACAAAACAAAAAAGTCGTAATGATTTGAAGTAGAT
66 CTTGTATGAATCAAAAATAATTGTTTTATGACAAAAC-AAAAAGTCATAACGATTTGAAATAGAT
** * * * *
17037962 AATCATTCAAAT-GGCGATAATTATTTTAACTGATTCAATAAATAGATTTATTTTTTAAATTTCT
130 AATTGTTCAAATAGTC-ATAACTATTTGAACTG-TTCAATAAATAGATTTATTTTTTAAATCTCT
* * * * *
17038026 TACTTATTAATTTAGAAAATATTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATTAAT
193 TACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTCGA-ATAAGCTTGTATGAAC
* * * *
17038091 TGAAATAATTGTTTTATGACAAATCAAAAGGTTATAACGATTTTAAATAGATAATTATTCAAATA
257 TGAAACAATTGTTTTATGACAAA-CAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATA
* * * * *
17038156 GTAATAACTATTTAAATTTATTCAGTAAATAGATTTATTTTTTTAAATCTCTTT-CTTATTAATT
321 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTA-TTTTTTAAATCT-TTTACTTATTAA-T
* * * * *
17038220 TTTTG-AATGTTAATAAATTAATATTAATTTATTTTGAATAAGCTTGTATAAATTGAAACAATTG
383 TTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTG
* * * * * * * * * * * *
17038284 TCTTATGACTAATCAAAA-AGTTAGAAAGATTT-AAAATAGATAATTATTCTAATAGTCTTAACC
447 TTTTATGACAAAACAAAAGA-TCA-TAACATTTGAGATTAGATAATTGTTCAAATAGTCATAACT
* * * *
17038347 AATTGAACTGATTCGATAAA-AAAATTAT
510 ATTTGAACTGTTTAG-TAAACAAATTTAT
* *
17038375 TTTTTAAATC---T-CTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTA-ATC-AA-A
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* ** * * * * *
17038433 -----AT--A--AAAAACAATTGCCTTACGA-TAAAGAAAAAGT-AAAACGATTTGAAATAAATA
66 CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGATA
** * * * ** *
17038487 ACCGTTCATATAGTCTTAACTATTTGAATTGGTT-AGGAAATTAGATTTA-TTTTTAAATTTTCT
131 ATTGTTCAAATAGTCATAACTATTTGAACT-GTTCAATAAA-TAGATTTATTTTTTAAA-TCTCT
** * * * * ** *
17038550 TTGTTATTAAGTTTTG-GACTATTATTAAATGAGTATTATTTTATTCCGAATAAAATAGTATGAA
193 TACTTATTAA-TTTTGAAAATATTAATAAATTAGTATTATTTTATT-CGAATAAGCTTGTATGAA
* * * * * *
17038614 CAT-AACCAATTGTTTGATGACAAA-ATTTAAGGTTATAATGATTTGAAATAAATAGTTATTCAA
256 C-TGAAACAATTGTTTTATGACAAACA--AAAGGTCATAATGATTTGAAATAGATAATTATTCAA
* * * * * * *
17038677 ATAGTCAAAACTATTTGAA-ATATTTTGGTAAACAAATTTACTTTTTAAATCTTTTACTGATTAG
318 ATAGTCATAACTATTTGAACTTA-TTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAA
* * * * * * **
17038741 TTTTCT-AAATATTAAGAAATTAGAATTATTTTATTTCGAACAAACTTATATTAACAAAAACAAT
382 TTTT-TGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAAT
* * * * * * * * *
17038805 TATTTTATAACAAAACAAAA-AGTAATAAAGATTTG-GAATAGACACTTTTTCAAATAGTTATAA
445 TGTTTTATGACAAAACAAAAGA-TCAT-AACATTTGAGATTAGATAATTGTTCAAATAGTCATAA
* * * *
17038868 TTATTTAAACTGTTTTGATAAATAGAA-TTAT
508 CTATTTGAACTGTTTAG-TAAACA-AATTTAT
* * * * * *
17038899 TTTCTAAATCTTTTATTTATAAATTTTTAAAATATTAATAAATTAGTTTTATTCTATTTCGAATA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT-
* * * * * * *
17038964 AGCTTGTATG-AGCTAAAATAAATGTTTTATGACAAAGC-AAAAGTCATAACAATTTCAAATAAA
65 A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGA
* * * * ** * *
17039027 AAATTTGTTCATATAGTCTTAACTGTTTGAACTAGTTTGACAAATAAATTTATTTTTTAAATCTC
129 TAA-TTGTTCAAATAGTCATAACTATTTGAACT-GTTCAATAAATAGATTTATTTTTTAAATCTC
* * * * * *
17039092 TTAATTATTAATTTTTAGAATATTACTAAATTAGTATTATTTTATTACAAATAAGCATGTATGAA
192 TTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATT-CGAATAAGCTTGTATGAA
* * ** * *
17039157 -TAGAAACAATTGTTTTATGATAGAACAAAAGGTTATAACAATTTAAAATAGATAATTGTTCAAA
256 CT-GAAACAATTGTTTTATGACA-AACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* * *
17039221 TAGTCATAACTATTTGAAC-TAGTTTGGTAAATAGATTTAATTTTTAAATC---T-CTTATTAAT
319 TAGTCATAACTATTTGAACTTA-TTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAAT
* * * *
17039281 TCTTGAAATATTAGTAAATTAGTATTATTTTATTTCGAATAAGCATGTATG-TTGAAAAACAATT
383 TTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATG--AAACAATT
* * * * * * * * *
17039345 GTTTTATGATAAAATAAAAGGTAATAACAATTTGA-AATAGATAGTTGTCCAAAT-GACCATAAT
446 GTTTTATGACAAAACAAAAGATCATAAC-ATTTGAGATTAGATAATTGTTCAAATAG-TCATAAC
* *
17039408 TATTTGAACATATTCAGTAAACAAATTTAT
509 TATTTGAAC-TGTTTAGTAAACAAATTTAT
* * * * ** * * *
17039438 TTTTTAAATCTCTTACTTGTTAACTTTTGAAATATTAATAAAGGAGTATTCTTTTTTTTTAAGAA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATT-ATTTTATTT-CGAA
* * * * * * * * *
17039503 AAGCTTTTATGAGTC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTTAAAAAT
64 TA-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAG
* * * * * *
17039567 ATAACTATTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAAATTTATTTTTTCAAATCT
128 ATAATTGTTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAATAGATTTATTTTTT-AAATCT
* *** * * *
17039632 CTTGCTTATTAATTTTTTGAATCTTAATAAATGAGTATTATTTTATTTCAAATAAGCTTGTATGA
191 CTTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTATGA
* * * ** * * *
17039697 ACTGAAACAATTGTTATATGACTAAAGAAAAGGTCAGAACAATTTGAAATAAATAATAATTCTAA
255 ACTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
** * ** ** *
17039762 TAGTTTTAATTATTTGAACTGGTTCGACAAACACATTTATTTTTTAAATC---T-CTTATTAA-T
319 TAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * * * * * *
17039822 TTTAAGAATATTATTAAGTTAGTATTATTTT-TATCCAAATAAGCTAGTATG-ATCAAAAACAAT
384 TTTGA-AATATTAATAAATTAGTATTATTTTAT-TTCGAATAAGCTTGTATGAAT--GAAACAAT
* *
17039885 TGTTTTATGACAAAAC-AAAGATCATAATGATTTGAGATT-GATATTTGTTCAAATAGTCATAAC
445 TGTTTTATGACAAAACAAAAGATCATAA-CATTTGAGATTAGATAATTGTTCAAATAGTCATAAC
* * *
17039948 TA-TTGAACTAGTTT-GGAAACAACTTTAG
509 TATTTGAACT-GTTTAGTAAACAAATTTAT
* * * * * * *
17039976 TTTTTAAATTTCTTACTTATTAATTTTTGAAATATTAGTAAAGTAGTATTATTTTATTTTGGATA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT-
* * ** * * *
17040041 AGTTTTTATGAAT-TGAAATAATTGTTTTATGACAAAACAAAACGTCATAACAACTTT-AAATAT
65 A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGA-TTTGAAATAG
* * *
17040104 ATAATTGTTCAAATAGTCA-AATCTATTTGAATTTGTTCAGTAAAGAGATTTATTTTTTTAAATC
128 ATAATTGTTCAAATAGTCATAA-CTATTTGAA-CTGTTCAATAAATAGATTTA-TTTTTTAAATC
* * *** * * *
17040168 TCTTGCTCATTAATTTTTTGAATGTTAATAAATTAGTATTAATTTATTCTGAATAAGCTTATATG
190 TCTTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTC-GAATAAGCTTGTATG
* * * ** * *
17040233 AACTGAAATAATTGTTTTATGACTAAAGAAAAGATCATAACAATTTGAAATAGATAATTGTTCTA
254 AACTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAA
* * * * * *
17040298 ATAGTCTTAACTATTTAAAC-TAGTTCAGCAAACATATTTATTTTTTAAATCTCTTACTTATTAA
318 ATAGTCATAACTATTTGAACTTA-TTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAA
* * * * *
17040362 TTTTTGGAATA-TAATTAAATTAGTATTATTTTA-ATCTAAATAAGCTTGTAGTAAAAGAAACAA
382 TTTTTGAAATATTAA-TAAATTAGTATTATTTTATTTC-GAATAAGCTTGTA-TGAATGAAACAA
* * * *
17040425 TTATTTTATGATAAAA-TAAAGATCATAACGATTTGAGA-TAGATAATTGTACAAATAGTCATAA
444 TTGTTTTATGACAAAACAAAAGATCATAAC-ATTTGAGATTAGATAATTGTTCAAATAGTCATAA
* * *
17040488 CTATTTGAACTATTTCAGTAAATAAATTTAG
508 CTATTTGAACTGTTT-AGTAAACAAATTTAT
* *
17040519 TTTTTAAATC---T-CTTATTAATTTTTAAAATATTAATAGATTAGTATTATTTT-TTTTGAATA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT-
* * * * *
17040579 ATTTTGCATGAA-CAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGA
65 A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGA
* * * * * * * *
17040643 TAATTGTTCAAAT-GAACATGATTATATAAACTTGTTC-ATACACATATTTATTTTTTAAATCTC
129 TAATTGTTCAAATAG-TCATAACTATTTGAAC-TGTTCAATAAATAGATTTATTTTTTAAATCTC
* * * * * * * * * *
17040706 CTACCTACTAATTTTTAGAATATTAATAAATTACTATTA-TCTCTT--AATAAACTTGAAT-AA-
192 TTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTCGAATAAGCTTGTATGAAC
* * * * * * *
17040766 --AAATAATTCTTTTATGACAAAAAAAAAGATCATAACT-ATTTGAAATAAATAATTAATCAAAC
257 TGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAA-TGATTTGAAATAGATAATTATTCAAAT
* * * * *
17040828 AGTCATAACTATTTGAATTTGCTT-GGTAAACGGATTTATTTTTTAAGTCTTTTACTT-TTTATT
320 AGTCATAACTATTTGAACTT-ATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * * *
17040891 TTTG--------------TAGTATTATATTATTTCAAATATGCTTGTATGAATAGAAACTATTAG
384 TTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAT-GAAACAATT-G
* * * * *
17040942 -TTTATGACCAAACAAAAGGTCATAACTCTTTCA-ATTAGATAATTGTTTAAATAGTCATAACTA
447 TTTTATGACAAAACAAAAGATCATAAC-ATTTGAGATTAGATAATTGTTCAAATAGTCATAACTA
* * * **
17041005 TTTGAACATGTTAAGGAAATAGGTTTAT
511 TTTGAAC-TGTTTAGTAAACAAATTTAT
**
17041033 TTTTTAAAT-TATTACTTATTAATTTTTGGAATATTAATAAATTTA-TATTATTTTATTT-GAAA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTTCG-AA
* * * * * * *
17041095 TAAGCTTGCATGAA-CAGAAACAATTGTTTTATTAGAAAACAAAATGTCATAATGATTTGAAATA
64 T-A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATA
* * * * * * ** * * *
17041159 TAAAATTGTTCATATAGCCATAACT-TTCTAAAGTTGTTTGATAAACAAATTCATTTTTTAAATC
127 GATAATTGTTCAAATAGTCATAACTATT-TGAA-CTGTTCAATAAATAGATTTATTTTTTAAATC
** * * * *
17041223 TCTTACTCCTTAATTCTTG-AAATGTTAATAAATTAGTGTTATTTTATTTCGAATAAGCCTATAT
190 TCTTACTTATTAATT-TTGAAAATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTAT
* * * * *
17041287 GAACTGATAGACTTGCTTTATGATGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
253 GAACTGAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
* * * * * * * *
17041352 AATATTTATGACTATTTGAACTTGTTCGGTAAGCATATTTATTTTTAAAATTTTTTACTTATTAA
317 AATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAA
* ** * * * * *
17041417 TTGTCAAAATATTAAGAAATTAATTTTATTTTAATTT-GAATAAGCATGTATGAATAAAAACAAT
382 TTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTCGAATAAGCTTGTATGAAT-GAAACAAT
* * * * *
17041481 TGTTTTATGATAAAACAAAAAATCGTAACGA-TTGA-AATAAATAATTGTTCAAATAGTCATAAC
445 TGTTTTATGACAAAACAAAAGATCATAAC-ATTTGAGATTAGATAATTGTTCAAATAGTCATAAC
* * * **
17041544 AATTTAAACT-TATTTGATAAGTAAATTTAT
509 TATTTGAACTGT-TTAG-TAAACAAATTTAT
* * * * *
17041574 TTTTTAAATCTTTTACTTATTAATTATTT-GAATATTAATAAATTTGTTTTTATTTTAATT-GAA
1 TTTTTAAATCTATTACTTATTAATT-TTTAAAATATTAATAAATTAG-TATTATTTTATTTCG-A
* * *
17041637 ATAAGCTTGTATGAAT-ATAAAA-AATTATTTTATGACAAAACAAAAAGTTATAGCGATTTGAAA
63 AT-A-CTTGTATGAATCA-AAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAA
* * * * * * *
17041700 TAGGTAATTATTCAAATAGTCATAACTCTTTGAACTTGTTCGATAAACAAATTTAGTTTTTAAAT
125 TAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAATAGATTTATTTTTTAAAT
* * * * * *
17041765 ATCTTA-TTA--ATTTTTG-AAATATTAATAGATTAGAATTATGTTATTCCAAATAAGCTTGTAC
189 CTCTTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATT-CGAATAAGCTTGTA-
* * * ** * * *
17041826 T-AA-TAGAAACAATTATTTTCTGATAAAACAAAAACTCATAATGATTTGAAAAAGATTATTGTT
252 TGAACT-GAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGATTTGAAATAGATAATTATT
* * * * * ** * *
17041889 CAAATACTAATAACTATTTGCATTTATTAGGCCAACAGATTCA-TTTTTAAAT-TCATTACTTAT
315 CAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCT-TTTACTTAT
* * * * * * *
17041952 TAA-TTTTCATAATATTAATAAATTAGCATTACTTTCTTTTGAATAAAAC-TGTATCAATAGAAA
379 TAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAAT-AAGCTTGTATGAAT-GAAA
* * * * * * * * *
17042015 CAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGA-AATAAACAATTATTCAAATTGTTA
441 CAATTGTTTTATGACAAAACAAAAGATCATAA-CATTTGAGATTAGATAATTGTTCAAATAGTCA
* * * *
17042079 TAACTAGTTGAATTGGTTTAGTAAATAGATTTAT
505 TAACTATTTGAACT-GTTTAGTAAACAAATTTAT
* * * *
17042113 TTTTTAAA--TA-T-CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTCCAAAAA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC---GA
* * * * * *
17042174 AAACTTATATGAA-CAAAAAT-ATTTTCTTTATGACAAAACAAAAGGTCATAATGATTAGAAATA
63 ATACTTGTATGAATCAAAAATAATTGT-TTTATGACAAAACAAAAAGTCATAACGATTTGAAATA
* * * * * **** * *
17042237 GATAATTATTCATATAGCCTTAACTATTTGAAATAGTTTGGCAAACAAATTTATTTTTTAAATCT
127 GATAATTGTTCAAATAGTCATAACTATTTGAACT-GTTCAATAAATAGATTTATTTTTTAAATCT
* * * * * * * * *
17042302 ATTAGTTATTATTTTTCATAATATTATTATATTAGTATTATTTTATTTTGAATAAGCGTGTATGA
191 CTTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTATGA
** * * * * ** * * *
17042367 ACAAAAATAATTATTTTATGACAAAATAAAAGGTTATAACAATTTGAAATATACAATTATT-TAA
255 ACTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* ** * * *
17042431 TAGTCATAACTATTTAAACTGGTTAGGTAAACAGATTTATTTTTTAAAT-TTCCTACTCATTAAT
319 TAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTT-TTACTTATTAAT
* * * * ** *
17042495 TTTTGAATTATTAA-AAATTAGTATTATTATATTTTGAATAGGCTCATACG-ATGAACAACAATT
383 TTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATG-A-AACAATT
* *
17042558 GTTTTATGTCAAAACAAAAG-T--T--CA--T--GA-T-GAT--TTG---AAATAG--ATAATTA
446 GTTTTATGACAAAACAAAAGATCATAACATTTGAGATTAGATAATTGTTCAAATAGTCATAACTA
*** *
17042605 TTTGAACTGATTT-GATAAATTGATTTAC
511 TTTGAACTG-TTTAG-TAAACAAATTTAT
* * * ** * *
17042633 TTTTTAAATCTGA-AACTTCTTAATTTTTGAAATATTAATAAGGTAATATTATTTTATTTTGAAT
1 TTTTTAAATCT-ATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* ** * * * * *
17042697 AAGCTTTTATGAA-CTGAAATAATTGTTTTATTATAAAACAAAAGGTCATAATGATTTTAAATAG
65 -A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAG
* * * * * * *
17042761 ATAATTGTTCAAATAGCCTTGACTATTTGAATTTCTTCGATAAATAGA-TT-TTTTTT-AATTTC
128 ATAATTGTTCAAATAGTCATAACTATTTGAA-CTGTTCAATAAATAGATTTATTTTTTAAATCTC
* * *** * *
17042823 TTGCTCATTAATTTTTTGAATGTTAATAGAA-TAGTATTATTTTATCTCGAATAAGCATGTATGA
192 TTACTTATTAATTTTGAAAATATTAATA-AATTAGTATTATTTTAT-TCGAATAAGCTTGTATGA
* * * * * * *
17042887 ACTAAAACAATTATTTTATGACTAAATAAAATGTTAGAATGATTTGAAATAGATAATTATTCTAA
255 ACTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* * * * * * *
17042952 TAATCTTAAGTATTTGAACTAATTCGGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATT
319 TAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * ** * * * * *
17043017 TTAG-AATATTATTAGTTTAGCAATATTTTACTTCGAATAAGCTTGTATAAACAGAAACAATTGT
384 TTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTGT
* * * * *
17043081 TTTATGACAAAAC-AAAGATCATAATTATTCGAGA-TAAATAATTCTTTAAATAGTCATAACTAT
448 TTTATGACAAAACAAAAGATCATAA-CATTTGAGATTAGATAATTGTTCAAATAGTCATAACTAT
** ** * *
17043144 TTGAACTGGTCCAGTAAGTAGATTTAG
512 TTGAACT-GTTTAGTAAACAAATTTAT
* * * **
17043171 TTTTTAAATC---T-CTTATTAATTTTTGAAATATTTATAAATTAATATTATTTTATTTTAAATA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT-
* * * * *
17043232 ATTTTGCATAAAT-AAAAATAATTGGTTTATGACAAAACAAAATA-TCATAACGATTTGAAATAA
65 A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAA-AGTCATAACGATTTGAAATAG
* ** **
17043295 ATAATTGTGCAAATAGTCATAACTATTTGAACTCAACTCGGTAAATAGATTTATTTTTTAAA---
128 ATAATTGTTCAAATAGTCATAACTATTTGAACT--GTTCAATAAATAGATTTATTTTTTAAATCT
* * * * **
17043357 --T-CTTATTAATTTTTAAAAAATTAAAAAATTTA-TATTATTTTATTCAAAATAAGCTTCCATG
191 CTTACTTATTAATTTTGAAAATATTAATAAA-TTAGTATTATTTTATTC-GAATAAGCTTGTATG
* * * * * *
17043418 AA-TAGAACCAATTGTTTTATGACAAAACAAAAGGTCATTATGTTTTGAAATAGATAACTGTTTA
254 AACT-GAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
* * * * * * * * *
17043482 TACAGTCATAACTATTTGAACTTATTTGGTAAATAGATTCT-TTTTTTAATTATCTTCCTCATTA
317 AATAGTCATAACTATTTGAACTTATTCGGTAAACAGATT-TATTTTTTAAATCTTTTACTTATTA
* ** * *
17043546 ATTTTTGGAATATTAATAAATTAGTATTATTTTACATCAAATAAGCTTATATGAACTGAAACAAT
381 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAAT
* * * * ** * *
17043611 TGTTTTACT-ACAAAAGAAAATG-TCAAAATGATTTGA-AATAGATAATTACTCAAATATTCATG
445 TGTTTTA-TGACAAAACAAAA-GATCATAA-CATTTGAGATTAGATAATTGTTCAAATAGTCATA
* *
17043673 ACTATTTGAACT-TGTTCGATAAACATATTTA-
507 ACTATTTGAACTGT-TTAG-TAAACAAATTTAT
* * * * * *
17043704 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAATATTATTTTA-ATCTGATT
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC-GAAT
* * * ** *
17043768 AGGCTTGTGTG-AGCAAAAACT-ATTGTTTTATAACTTAACAAAAAGTCATAATGATTTGAAATA
65 A--CTTGTATGAATCAAAAA-TAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATA
* * * ***
17043831 AATAATTGCTCAAATAGTCATAACTATTAGAACTTGTTTGCTAAATAGATTTATTTTTTAAATCT
127 GATAATTGTTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAATAGATTTATTTTTTAAATCT
* * * * * * * *
17043896 CTTA-TTA--ATTTTTG-AAATAATAGTATATTAGTATTTTTTTTATTTCGAACAAACTTATATG
191 CTTACTTATTAATTTTGAAAATATTAATAAATTAGTA-TTATTTTA-TTCGAATAAGCTTGTATG
* * * *
17043957 AA-TAAAAACATTTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTA
254 AACT-GAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
* * * * *
17044021 AATAGTCATAATTATTTGAA-TTGGTTAGGTAAACAAAATTATTTTTTAAATCTTTTACTTATTA
317 AATAGTCATAACTATTTGAACTT-ATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTA
* * * * * * * *
17044085 ATTTTTGAAATATTATTAGATTCA-TTTTACTTTATTCCTAATAAGCTAGTATGAATTGAAAAAA
381 ATTTTTGAAATATTAATAAATT-AGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAA
* * * * * * * * * *
17044149 TTATTTTATGACAAAATAAAGGGTCATAATGATTTCA-AATAAATAATTGTTCATATAGTCTTAA
444 TTGTTTTATGACAAAACAAAAGATCATAA-CATTTGAGATTAGATAATTGTTCAAATAGTCATAA
* * **
17044213 CTATTTGAACTACTTCACCAAACAAATTTAT
508 CTATTTGAACT-GTTTAGTAAACAAATTTAT
* * * *
17044244 TTTTTAAATCTCTTAGTTATTAATTTTTAAAATATTATTAGATTAGTATTATTTTATTTCGAATA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT-
* * * * *
17044309 AGCTTGTATGAAT-AAAAATAATT-TTTTATGGCAAAACAAAAGGTTATAACGATTTGAAGTATA
65 A-CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGA
* * *** * *
17044372 CAATTGTTCAAATAGTTATAACTATTTGAACTGGTTTGGTAAATAGATTTATTTTTTAAATATTT
129 TAATTGTTCAAATAGTCATAACTATTTGAACT-GTTCAATAAATAGATTTATTTTTTAAATCTCT
*
17044437 TACTTACTAATTTTTGAAAA-ATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAT
193 TACTTATTAA-TTTTGAAAATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTATGA-
*** * * * * *
17044501 AAAAAAACAATTGTTATATGACCAAACAAAAGGT-ACTAATGATTTGAAATAAACAATTGTTGAA
255 ACTGAAACAATTGTTTTATGA-CAAACAAAAGGTCA-TAATGATTTGAAATAGATAATTATTCAA
* * * * * * * **
17044565 ATAGCCATAATTATTTGCACTGATTCGCTAAACAGATTCACTTTTTAAATCACTTACTTATTAAT
318 ATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAAT
** * *
17044630 TTTTGAAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTAAAACAATTA
383 TTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTG
* * * * * * * * *
17044695 TTTTATGATAAAATAGAATG-TCATAACAATTTTA-AATAGACAATTGTTCCAGTAGTCTTAACT
447 TTTTATGACAAAACA-AAAGATCATAAC-ATTTGAGATTAGATAATTGTTCAAATAGTCATAACT
* * *
17044758 ATTTGAATTTATTTGGTAAACAAATTTAT
510 ATTTGAA-CTGTTTAGTAAACAAATTTAT
* * ** ** * *
17044787 CTTTTTAAA-CTCTTGCTTATTAATTTAAAAAATATTACGAAATTAGTATTATTTTATTTTGGAT
1 -TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* ** * * * *
17044851 AAGCCTT-TATG-ACCTGAAACAATTGTTTTATGTCAAAACAAAAGGTCATAACGATTTTAAATA
65 -A--CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATA
* * * * * *** *
17044914 AATAATTGTTCAAGTAATCATAACTATTTAAACTTCTTTGGTAAACAGATTTATTTTTTCAAATC
127 GATAATTGTTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAATAGATTTATTTTTT-AAATC
* * *** * * * * *
17044979 TTTTGCTTATTAATTTTTTGAATGTTAATAAATTTGGATTATTTTATTCTGAAGAAGCTTGTAAG
190 TCTTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTC-GAATAAGCTTGTATG
* * * * *
17045044 ATA-TGAAACAAATATATTATGACTAAACAAAAGGTCATAATGATTTGAAATAGAAAATTATTCT
254 A-ACTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
** * * * * * * * * *
17045108 AATAGTTTTAATTATTTGAA-TTGGTTTGGCAAAGA-ACTTTTTTTTTTTATATCTCTTA-GTAT
317 AATAGTCATAACTATTTGAACTT-ATTCGGTAAACAGA--TTTATTTTTTAAATCTTTTACTTAT
*** * * * ** ** * * *
17045170 T-ATTTTT--AA-CCGAATAAGCTT-CTATCATCATA-AAC-AATTA--TTTTATGACA-AAAAC
379 TAATTTTTGAAATATTAATAA-ATTAGTATTATTTTATTTCGAATAAGCTTGTATGA-ATGAAAC
** * * ** *
17045225 AAAAG---T-T--CATAAC-----A--AT-----TTGA-AATAGATAATCATTCAAATGGTCA-A
442 AATTGTTTTATGACAAAACAAAAGATCATAACATTTGAGATTAGATAATTGTTCAAATAGTCATA
* * ** * * *
17045270 ATTATTTTAACTAAATTGGTAAATAGATTTAT
507 ACTATTTGAACT-GTTTAGTAAACAAATTTAT
* * * * * *** *
17045302 TTTTTAAATTTTTTATTTAATAGTTTAGGAAATATTAATAAATTAGTATTATTTTATTTTGTCTA
1 TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTA--TT-TCGA
* ** * * * * * *
17045367 A-ACTTGTATTAAT-TGAAATAATTGCTTTATGACAAATCAAAAAGTTATAACAATTTTAAATAA
63 ATACTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAG
* *
17045430 ATAATTGTTCAAATA---AT-A--A--T-AAC---T--ATTAATAGATTTATTTTTTAAAATCGC
128 ATAATTGTTCAAATAGTCATAACTATTTGAACTGTTCAATAAATAGATTTATTTTTT-AAATCTC
* ** * * *
17045481 TTTCTTATTAATTTTTTAAATGTTAATAAATTAGTATTAATTTATTCTAAATAAGCTTGTATGAA
192 TTACTTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTC-GAATAAGCTTGTATGAA
* * * * * * * **
17045546 CTAAAATAATTATTTTATAACTAAACAAAAGGTCATAATGATTTAAAATAAATAATTTTTGTAAT
256 CTGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAAT
* * * * * *
17045611 AGTCTTAACCATTTAAACTAATTCGGTAAATA-ATTTTATTTTTTAAATCTCTTACTTATTAATT
320 AGTCATAACTATTTGAACTTATTCGGTAAACAGA-TTTATTTTTTAAATCTTTTACTTATTAATT
* * * * ** *
17045675 TTTGAAATATTATTAAATTAGTATTATTTGA-ATCAAATAAGCTTGTACAAATAAAACAATTGTT
384 TTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATGAAACAATTGTT
17045739 TTA
449 TTA
17045742 CAACAAAAGA
Statistics
Matches: 6250, Mismatches: 1300, Indels: 745
0.75 0.16 0.09
Matches are distributed among these distances:
499 20 0.00
500 157 0.03
501 7 0.00
502 1 0.00
503 4 0.00
504 12 0.00
505 4 0.00
506 4 0.00
507 14 0.00
509 1 0.00
510 1 0.00
511 1 0.00
512 5 0.00
513 43 0.01
514 82 0.01
515 125 0.02
516 23 0.00
517 37 0.01
518 93 0.01
519 53 0.01
520 152 0.02
521 114 0.02
522 22 0.00
523 235 0.04
524 231 0.04
525 21 0.00
526 7 0.00
527 116 0.02
528 137 0.02
529 10 0.00
530 8 0.00
531 10 0.00
532 157 0.03
533 79 0.01
534 195 0.03
535 148 0.02
536 137 0.02
537 415 0.07
538 437 0.07
539 1066 0.17
540 276 0.04
541 484 0.08
542 201 0.03
543 634 0.10
544 202 0.03
545 69 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (537 bp):
TTTTTAAATCTATTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
CTTGTATGAATCAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGATA
ATTGTTCAAATAGTCATAACTATTTGAACTGTTCAATAAATAGATTTATTTTTTAAATCTCTTAC
TTATTAATTTTGAAAATATTAATAAATTAGTATTATTTTATTCGAATAAGCTTGTATGAACTGAA
ACAATTGTTTTATGACAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCAT
AACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
TATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATGAAACAATTGTTTTATGAC
AAAACAAAAGATCATAACATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTTGAACTGT
TTAGTAAACAAATTTAT
Found at i:17038216 original size:182 final size:179
Alignment explanation
Indices: 17037293--17038426 Score: 833
Period size: 182 Copynumber: 6.3 Consensus size: 179
17037283 ATAGATTGAC
* * *
17037293 TTTTTAAAT-TATTTACTTATTAAATTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAAT
1 TTTTTAAATCTCTTT-CTTATT-AATTTTGAAATATTAATAAATTAGTATTATTTTA-TTCGAAT
* * * *
17037357 AAGTTTGTATAAACT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAG
63 AAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* * * * * * *
17037421 ACAATTGTTTAAATAGTCGTAACTATTTGAATTTCTTCAATAAATAAATTTAT
127 ATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAAATTTAT
* * * * * * * *
17037474 TTCTTTTAA-CGCGTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTAATTTATTTAGGAT
1 TT-TTTAAATCTCTTTCTTATTAA-TTTTGAAATATTAATAAATTAGTATTATTTTA-TTCGAAT
* ** * *
17037538 AAGCTTTTATGAACTA-AAACAATTGTTTTATGTTAAAACAAAAGGTCATAATGATTTTAAATCA
63 AAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAAT-A
* ** * ** *
17037602 -ATAATTATTCAAATAACCATAACAATTTGAACTTGCTC-GATAAATAAATTTAT
126 GATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAG-TAAACAAATTTAT
* * * * *
17037655 TTTTTCAAATCT-TTTGCTTATTAATTTTTCAAATGTTAATAAATTTGGATTATTTTATTCCAAA
1 TTTTT-AAATCTCTTT-CTTATTAA-TTTTGAAATATTAATAAATTAGTATTATTTTATT-CGAA
* * * * * * *
17037719 TAAACTTGTAAG-ATATGAAACAAATATTTTATGACAAAA-AAAAGATCTTAAC-ATTTGAGATT
62 TAAGCTTGTATGAATA-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA-AAT
* * *
17037781 A-ATAATTGTTCAAATAGTCATAACTATTTGAA-TTGGTTTAGTAAACATATTTAT
125 AGATAATTGTTCAAATAGTCATAACTATTTGAACTT-ATTCAGTAAACAAATTTAT
* * * * *
17037835 TTTTTAAATCTATTACTTATTAATTTTTCAAATATTAATAAATTAGTTTTGTTTTATTTCG-AT-
1 TTTTTAAATCTCTTTCTTATTAA-TTTTGAAATATTAATAAATTAGTATTATTTTA-TTCGAATA
* * * * * * *
17037898 --CTTGTAT-AATCAAAAATAATTATTTTATGACAAAACAAAAAAGTCGTAATGATTTGAAGTAG
64 AGCTTGTATGAAT-AGAAACAATTGTTTTATGACAAAAC-AAAAGGTCATAACGATTTGAAATAG
** * * * * * * *
17037960 ATAATCATTCAAAT-GGCGATAATTATTTTAACTGATTCAATAAATAGATTTAT
127 ATAATTGTTCAAATAGTC-ATAACTATTTGAACTTATTCAGTAAACAAATTTAT
* * * * *
17038013 TTTTTAAATTTCTTACTTATTAATTTAGAAAATATTAATAAATTAGTATTATTTTATTCCATCTA
1 TTTTTAAATCTCTTTCTTATTAATTTTG-AAATATTAATAAATTAGTATTATTTTATTCGA-ATA
* * * * * *
17038078 AGCTTGTATTAATTGAAATAATTGTTTTATGACAAATCAAAAGGTTATAACGATTTTAAATAGAT
64 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGAT
* * * * * *
17038143 AATTATTCAAATAGTAATAACTATTTAAATTTATTCAGTAAATAGATTTATT
129 AATTGTTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAAATTTA-T
* * * *
17038195 TTTTTAAATCTCTTTCTTATTAATTTTTTG-AATGTTAATAAATTAATATTAATTTATTTTGAAT
1 TTTTTAAATCTCTTTCTTATTAA--TTTTGAAATATTAATAAATTAGTATTATTTTA-TTCGAAT
* * * * * * * * * *
17038259 AAGCTTGTATAAATTGAAACAATTGTCTTATGACTAATCAAAAAGTTAGAAAGATTTAAAATAGA
63 AAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGA
* * * * * * *
17038324 TAATTATTCTAATAGTCTTAACCAATTGAACTGATTC-GATAAA-AAAATTAT
128 TAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAG-TAAACAAATTTAT
* *
17038375 TTTTTAAA--TC--TCTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTA
1 TTTTTAAATCTCTTTCTTATTAA-TTTTGAAATATTAATAAATTAGTATTATTTTA
17038427 ATCAAAATAA
Statistics
Matches: 770, Mismatches: 144, Indels: 83
0.77 0.14 0.08
Matches are distributed among these distances:
175 33 0.04
176 32 0.04
177 20 0.03
178 93 0.12
179 47 0.06
180 71 0.09
181 228 0.30
182 236 0.31
183 6 0.01
184 4 0.01
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (179 bp):
TTTTTAAATCTCTTTCTTATTAATTTTGAAATATTAATAAATTAGTATTATTTTATTCGAATAAG
CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAA
TTGTTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAAATTTAT
Found at i:17042073 original size:180 final size:179
Alignment explanation
Indices: 17040921--17042534 Score: 795
Period size: 180 Copynumber: 9.0 Consensus size: 179
17040911 CAAATATGCT
* * * * * * * * *
17040921 TGTATGAATAGAAACTATTAGTTTATGACCAAACAAAAGGTCATAACT-CTTTCAATTAGATAAT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAAACAAT
* * * ** * * * *
17040985 TGTTTAAATAGTCATAACTATTTGAACATGTTAAGG-AAATAGGTTTATTTTTTAAATTATTACT
65 TATTCAAATACT-ATAACTATTTG-ATTTATT-AGGCAAACAGATTTATTTTTTAAATCATTACT
*** * *
17041049 TATTAATTTTTGGAATATTAATAAATTTA-TATTATTTTA-TTTGAA-ATAAGCT
127 TATTAATTTTCATAATATTAATAAA-TTAGTATTATTTTATTTTGAATA-AAACG
* * * * *
17041101 TGCATGAACAGAAACAATTGTTTTATTAGAAAACAAAATGTCATAATGATTTGAAATATAA-AAT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-AACAAT
* * * * * * * ** * * *
17041165 TGTTCATATAGCCATAACT-TTCTAAAGTTGTTTGATAAACAAATTCATTTTTTAAATCTCTTAC
65 TATTCAAATA-CTATAACTATT-T-GATTTATTAGGCAAACAGATTTATTTTTTAAATC-ATTAC
** * * * * * *
17041229 TCCTTAATTCTTGA-AATGTTAATAAATTAGTGTTATTTTATTTCGAAT-AAGCC
126 TTATTAATT-TTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * * * ** ** * *
17041282 TATATGAACTGATAGACTTGCTTTATGATGAAACAAAAGGTCATAATGATTTGAAATAGATAATT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
* * * * * * * * * **
17041347 ATTCAAATATTTATGACTATTTGAACTTGTTCGGTAAGCATATTTATTTTTAAAATTTTTTACTT
66 ATTCAAATA-CTATAACTATTTG-ATTTATTAGGCAAACAGATTTATTTTTTAAA-TCATTACTT
* * * * * * * *
17041412 ATTAATTGTCAAAATATTAAGAAATTAATTTTATTTTAATTTGAAT-AAGCA
128 ATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * * ** * * *
17041463 TGTATGAATAAAAACAATTGTTTTATGATAAAACAAAAAATCGTAACGA-TTGAAATAAATAATT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
* * * * * * ** ** * *
17041527 GTTCAAATAGTCATAACAATTTAAACTTATTTGATAAGTAAATTTATTTTTTAAATCTTTTACTT
66 ATTCAAATACT-ATAACTATTT-GATTTATTAGGCAAACAGATTTATTTTTTAAATC-ATTACTT
* * * * *
17041592 ATTAATTATT--TGAATATTAATAAATTTGTTTTTATTTTA-ATTGAA-ATAAGCT
128 ATTAATT-TTCAT-AATATTAATAAATTAG-TATTATTTTATTTTGAATA-AAACG
* * * * * ** ***
17041644 TGTATGAATATAAAAAATTATTTTATGACAAAACAAAAAGTTATAGCGATTTGAAATAGGTAATT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
* * * * * ** * *
17041709 ATTCAAATAGTCATAACTCTTTGAACTTGTTCGATAAACAAATTTAGTTTTTAAAT-A-T-CTTA
66 ATTCAAATACT-ATAACTATTTG-ATTTATTAGGCAAACAGATTTATTTTTTAAATCATTACTTA
* * * * *** * *
17041771 TTAATTTTTGA-AATATTAATAGATTAGAATTATGTTATTCCAAAT-AAGCT
129 TTAA-TTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * ** **
17041821 TGTACT-AATAGAAACAATTATTTTCTGATAAAACAAAAACTCATAATGATTTGAAA-AAGATTA
1 TGTA-TGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAA-ACAA
* * *
17041884 TTGTTCAAATACTAATAACTATTTGCATTTATTAGGCCAACAGATTCA-TTTTTAAATTCATTAC
64 TTATTCAAATACT-ATAACTATTTG-ATTTATTAGGCAAACAGATTTATTTTTTAAA-TCATTAC
* * *
17041948 TTATTAATTTTCATAATATTAATAAATTAGCATTACTTTCTTTTGAATAAAAC-
126 TTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * *
17042001 TGTATCAATAGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAAACAATT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
** * * *
17042066 ATTCAAATTGTTATAACTAGTTGAATTGGT-TTA-GTAAATAGATTTATTTTTTAAAT-A-T-CT
66 ATTCAAA-TACTATAACTATTTG-ATT--TATTAGGCAAACAGATTTATTTTTTAAATCATTACT
* * *** * *
17042126 TATTAATTTTTGA-AATATTAATAAATTAATATTATTTTATTCCAAAAAAAACT
127 TATTAA-TTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * * *
17042179 TATATGAACA-AAA-ATATTTTCTTTATGACAAAACAAAAGGTCATAATGATTAGAAATAGATAA
1 TGTATGAACAGAAACA-ATTAT-TTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAA
* ** * *
17042242 TTATTCATATAGCCT-TAACTATTTGAAATAGTTTGGCAAACAAATTTATTTTTTAAATCTATTA
64 TTATTCAAATA--CTATAACTATTTGATTTA-TTAGGCAAACAGATTTATTTTTTAAATC-ATTA
* * * * *
17042306 GTTATTATTTTTCATAATATTATTATATTAGTATTATTTTATTTTGAAT-AAGCG
125 CTTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
* * * * ** *
17042360 TGTATGAACAAAAATAATTATTTTATGACAAAATAAAAGGTTATAACAATTTGAAATATACAATT
1 TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
* * * * ** * *
17042425 ATT-TAATAGTCATAACTATTTAAACTGGTTAGGTAAACAGATTTATTTTTTAAATTTC-CTACT
66 ATTCAAATACT-ATAACTATTT-GATTTATTAGGCAAACAGATTTATTTTTTAAA--TCATTACT
* *
17042488 CATTAATTTT--TGAATTATTAA-AAATTAGTATTATTATATTTTGAATA
127 TATTAATTTTCAT-AA-TATTAATAAATTAGTATTATTTTATTTTGAATA
17042535 GGCTCATACG
Statistics
Matches: 1111, Mismatches: 254, Indels: 138
0.74 0.17 0.09
Matches are distributed among these distances:
175 1 0.00
176 10 0.01
177 146 0.13
178 118 0.11
179 43 0.04
180 344 0.31
181 336 0.30
182 112 0.10
183 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
TGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAACAATT
ATTCAAATACTATAACTATTTGATTTATTAGGCAAACAGATTTATTTTTTAAATCATTACTTATT
AATTTTCATAATATTAATAAATTAGTATTATTTTATTTTGAATAAAACG
Found at i:17042152 original size:19 final size:20
Alignment explanation
Indices: 17042111--17042152 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
17042101 AAATAGATTT
* * *
17042111 ATTTTTTAAATATCTTATTA
1 ATTTTTGAAATATCTAATAA
17042131 ATTTTTGAAATAT-TAATAA
1 ATTTTTGAAATATCTAATAA
17042150 ATT
1 ATT
17042153 AATATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTTTGAAATATCTAATAA
Found at i:17043648 original size:181 final size:181
Alignment explanation
Indices: 17042647--17045127 Score: 2028
Period size: 181 Copynumber: 13.8 Consensus size: 181
17042637 TAAATCTGAA
* ** * * *
17042647 ACTTCTTAATTTTTGAAATATTAATAAGGTAATATTATTTTATTTTGAATAAGCTTTTATGAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * *
17042712 GAAATAATTGTTTTATTATAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAG
66 AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAG
* * * * * * * *
17042777 CCTTGACTATTTGAATTTCTTCGATAAATAGA-TT-TTTTTT-AATTTCTT
131 TCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * * * *
17042825 GCTCATTAATTTTTTG-AATGTTAATAGAA-TAGTATTATTTTATCTCGAATAAGCATGTATGAA
1 ACTTATTAA-TTTTTGAAATATTAATA-AATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA
* * * * * * * * *
17042888 CTAAAACAATTATTTTATGACTAAATAAAATGTTAGAATGATTTGAAATAGATAATTATTCTAAT
64 CTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAAT
* * * * * * *
17042953 AATCTTAAGTATTTGAACTAATTCGGCAAACACATTTATTTTTTAAATCTCTT
129 AGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * ** * * * *
17043006 ACTTATTAATTTTAG-AATATTATTAGTTTAGCAATATTTTACTTCGAATAAGCTTGTATAAAC-
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * *
17043069 AGAAACAATTGTTTTATGACAAAAC-AAAGATCATAATTATTCGAGATAAATAATTCTTTAAATA
66 A-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
** * * ** *
17043133 GTCATAACTATTTGAACTGGTCCAGTAAGTAGATTTAGTTTTT-AA-ATC-T
130 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * ** ** * *
17043182 -CTTATTAATTTTTGAAATATTTATAAATTAATATTATTTTATTTTAAATAATTTTGCAT-AAAT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * ** * *
17043245 AAAAATAATTGGTTTATGACAAAACAAAATATCATAACGATTTGAAATAAATAATTGTGCAAATA
66 -AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * *
17043310 GTCATAACTATTTGAACTCAACTCGGTAAATAGATTTATTTTTT-AA-A---T
130 GTCATAACTATTTGAACT-TATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * * * **
17043358 -CTTATTAATTTTTAAAAAATTAAAAAATTTA-TATTATTTTA-TTCAAAATAAGCTTCCATGAA
1 ACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTC-GAATAAGCTTGTATGAA
* * * * * * *
17043420 -TAGAACCAATTGTTTTATGACAAAACAAAAGGTCATTATGTTTTGAAATAGATAACTGTTTATA
64 CTA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAA
* * * *
17043484 CAGTCATAACTATTTGAACTTATTTGGTAAATAGATTCT-TTTTTTAATTATCTT
128 TAGTCATAACTATTTGAACTTATTCGGTAAACAGATT-TATTTTTTAAATATCTT
* * * ** * *
17043538 CCTCATTAATTTTTGGAATATTAATAAATTAGTATTATTTTACATCAAATAAGCTTATATGAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * **
17043603 GAAACAATTGTTTTACT-ACAAAAGAAAATGTCAAAATGATTTGAAATAGATAATTACTCAAATA
66 AAAACAATTGTTTTA-TGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * * * * * *
17043667 TTCATGACTATTTGAACTTGTTCGATAAACATATTTA-TTTTTAAATCTTTT
130 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* ** * * * * * *
17043718 ACTTATTAATTGTCAAAATATTAATAAATTAATATTATTTTA-ATCTGATTAGGCTTGTGTGAGC
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAAC
* * * ** * *
17043782 AAAAACTATTGTTTTATAACTTAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTCAAATA
65 TAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * * * *
17043847 GTCATAACTATTAGAACTTGTTTGCTAAATAGATTTATTTTTT-AA-ATC-T
130 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * * * * * *
17043896 -CTTATTAATTTTTGAAATAATAGTATATTAGTATTTTTTTTATTTCGAACAAACTTATATGAA-
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTA-TTATTTTATTTCGAATAAGCTTGTATGAAC
* * * * *
17043959 TAAAAACATTTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAAT
65 T-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAAT
* * * * * * *
17044024 AGTCATAATTATTTGAA-TTGGTTAGGTAAACAAAATTATTTTTTAAATCTTTT
129 AGTCATAACTATTTGAACTT-ATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * * * * * * *
17044077 ACTTATTAATTTTTGAAATATTATTAGATTCA-TTTTACTTTATTCCTAATAAGCTAGTATGAAT
1 ACTTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * * * *
17044141 TGAAAA-AATTATTTTATGACAAAATAAAGGGTCATAATGATTTCAAATAAATAATTGTTCATAT
65 T-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAAT
* *** * *
17044205 AGTCTTAACTATTTGAAC-TACTTCACCAAACAAATTTATTTTTTAAATCTCTT
129 AGTCATAACTATTTGAACTTA-TTCGGTAAACAGATTTATTTTTTAAATATCTT
* * * *
17044258 AGTTATTAATTTTTAAAATATTATTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-T
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * * *
17044322 AAAAATAATT-TTTTATGGCAAAACAAAAGGTTATAACGATTTGAAGTATACAATTGTTCAAATA
66 -AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* ** * * *
17044386 GTTATAACTATTTGAACTGGTTTGGTAAATAGATTTATTTTTTAAATATTTT
130 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
* * *
17044438 ACTTACTAATTTTTGAAAAATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATAA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGA-AC
* * * * *
17044503 AAAAACAATTGTTATATGACCAAACAAAAGGT-ACTAATGATTTGAAATAAACAATTGTTGAAAT
65 TAAAACAATTGTTTTATGACAAAACAAAAGGTCA-TAATGATTTGAAATAAATAATTGTTCAAAT
* * * * * * *
17044567 AGCCATAATTATTTGCACTGATTCGCTAAACAGATTCACTTTTTAAATCA-CTT
129 AGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAAT-ATCTT
**
17044620 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * ** * * * * *
17044685 AAAACAATTATTTTATGATAAAATAGAATGTCATAACAATTTTAAATAGACAATTGTTCCAGTAG
66 AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAG
* * * * *
17044750 TCTTAACTATTTGAATTTATTTGGTAAACAAATTTATCTTTTTAAA-CTCTT
131 TCATAACTATTTGAACTTATTCGGTAAACAGATTTAT-TTTTTAAATATCTT
* *** ** * * *
17044801 GCTTATTAATTTAAAAAATATTACGAAATTAGTATTATTTTATTTTGGATAAGCCTT-TATGACC
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAG-CTTGTATGAAC
* * * * *
17044865 TGAAACAATTGTTTTATGTCAAAACAAAAGGTCATAACGATTTTAAATAAATAATTGTTCAAGTA
65 TAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * * * * *
17044930 ATCATAACTATTTAAACTTCTTTGGTAAACAGATTTATTTTTTCAAATCTTTT
130 GTCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTT-AAATATCTT
* * * * * *
17044983 GCTTATTAATTTTTTG-AATGTTAATAAATTTGGATTATTTTA-TTCTGAAGAAGCTTGTAAGAT
1 ACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGA-
* * * * * * *
17045046 A-TGAAACAAATATATTATGACTAAACAAAAGGTCATAATGATTTGAAATAGAA-AATTATTCTA
63 ACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-AATAATTGTTCAA
** *
17045109 ATAGTTTTAATTATTTGAA
127 ATAGTCATAACTATTTGAA
17045128 TTGGTTTGGC
Statistics
Matches: 1833, Mismatches: 408, Indels: 120
0.78 0.17 0.05
Matches are distributed among these distances:
175 38 0.02
176 168 0.09
177 86 0.05
178 246 0.13
179 78 0.04
180 367 0.20
181 547 0.30
182 296 0.16
183 7 0.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (181 bp):
ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAG
TCATAACTATTTGAACTTATTCGGTAAACAGATTTATTTTTTAAATATCTT
Found at i:17044033 original size:18 final size:19
Alignment explanation
Indices: 17043990--17044040 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
17043980 AAAACAAAAG
*
17043990 GTCATAATGATTTGAAATA
1 GTCATAATTATTTGAAATA
17044009 G--ATAATTATTT-AAATA
1 GTCATAATTATTTGAAATA
17044025 GTCATAATTATTTGAA
1 GTCATAATTATTTGAA
17044041 TTGGTTAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.21
17 9 0.32
18 10 0.36
19 3 0.11
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (19 bp):
GTCATAATTATTTGAAATA
Found at i:17045797 original size:179 final size:182
Alignment explanation
Indices: 17045463--17045797 Score: 446
Period size: 179 Copynumber: 1.9 Consensus size: 182
17045453 TATTAATAGA
* * * *
17045463 TTTATTTTTTAAAATCGCTTTCTTATTAATTTTTTAAATGTTAATAAATTAGTATTAATTTATTC
1 TTTATTTTTTAAAATCGCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAATTTAATC
* * * * *
17045528 TAAATAAGCTTGTATGAACTAAAATAATTATTTTATAACTAAACAAAAGGTCATAATGATTTAAA
66 TAAATAAGCTTGTATCAAATAAAACAATTATTTTACAACAAAACAAAAGGTCATAATGATTTAAA
* *
17045593 ATAAATAATTTTTGTAATAGTCTTAACCATTTAAACTAATTCGGTAAATAAT
131 ATAAATAATATTTATAATAGTCTTAACCATTTAAACTAATTCGGTAAATAAT
* *
17045645 TTTATTTTTT-AAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAGTATT-ATTTGAAT
1 TTTATTTTTTAAAATCGCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAATTT-AAT
* * * *
17045708 C-AAATAAGCTTGTA-CAAATAAAACAATTGTTTTACAACAAAAGAGAAGGTCATAATGATTTGA
65 CTAAATAAGCTTGTATCAAATAAAACAATTATTTTACAACAAAACAAAAGGTCATAATGATTTAA
* *
17045771 AATAGATTATCATTTAT-ATAGTCTTAA
130 AATAAATAAT-ATTTATAATAGTCTTAA
17045798 TGATGTCCAG
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
179 58 0.44
180 21 0.16
181 43 0.33
182 10 0.08
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (182 bp):
TTTATTTTTTAAAATCGCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAATTTAATC
TAAATAAGCTTGTATCAAATAAAACAATTATTTTACAACAAAACAAAAGGTCATAATGATTTAAA
ATAAATAATATTTATAATAGTCTTAACCATTTAAACTAATTCGGTAAATAAT
Found at i:17047263 original size:178 final size:179
Alignment explanation
Indices: 17047079--17047411 Score: 449
Period size: 178 Copynumber: 1.9 Consensus size: 179
17047069 TACTTTATTT
* * *
17047079 TTTAAATCTCCAACTCATTAATTTTATA-ATATTAATAAATTAGTATTCTTTTATTT-GAATAA-
1 TTTAAATCTCCAACTCATTAATTTT-TAGA-ATAAATAAATTAGTATTATTTTATTTCAAATAAG
* * * *
17047141 ACTTATATAAATAGAAACAATTGTTTTTTGACATAACAAAAGATAATAACGATTTGAAATAAATA
64 A-TTACATAAATAGAAACAATTGGTTTATGACAAAACAAAAGATAATAACGATTTGAAATAAATA
17047206 AGTGTCT-AATAGTCATAACTATTTGAACTCGCTCAGTAAACATATTTAAAA
128 AGTGTCTAAATAGTCATAACTATTTGAACTCGCTCAGTAAACATATTTAAAA
*** *
17047257 TTTAAATCTTTTACTTATTAATTTTTAGAATAAATAAATTAGTATTATTTTATTTCAAATAAGAT
1 TTTAAATCTCCAACTCATTAATTTTTAGAATAAATAAATTAGTATTATTTTATTTCAAATAAGAT
* * * * * *
17047322 TGCATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATT
66 TACATAAATAGAAACAATTGGTTTATGACAAAACAAAAGATAATAACGATTTGAAATAAATAAGT
*
17047387 GTTTAAATAGTCATAACTATTTGAA
131 GTCTAAATAGTCATAACTATTTGAA
17047412 TGTATTCACA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
177 26 0.20
178 86 0.65
179 21 0.16
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (179 bp):
TTTAAATCTCCAACTCATTAATTTTTAGAATAAATAAATTAGTATTATTTTATTTCAAATAAGAT
TACATAAATAGAAACAATTGGTTTATGACAAAACAAAAGATAATAACGATTTGAAATAAATAAGT
GTCTAAATAGTCATAACTATTTGAACTCGCTCAGTAAACATATTTAAAA
Found at i:17047547 original size:180 final size:179
Alignment explanation
Indices: 17046739--17048275 Score: 845
Period size: 177 Copynumber: 8.7 Consensus size: 179
17046729 TCTAATAGTC
* * ** * * * * *
17046739 TTAACTTTTAGAATATTATTAGTTTAGCAATATTTTACTCCAAATAAGCTTGTATGAATAGAAAC
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAAC
* * * * * * *
17046804 AATTGTTTTATAACAAAACAAAGATCATAACAATTTGAGATAGCTTATTGTTCAAATAGTGATAA
66 AATTGTTTTATGACAAAAAAAAG-TCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAA
* * * *
17046869 CTATTTGAACTAGTTTGCTAAATAGATTTAGTTTTCAAA---TCT-CTTA
130 CTATTTGAACTAGTTTACTAAATATATTTATTTTTTAAATCTTCTACTTA
* * * * ** *
17046915 CTAATTTTTAAAATATTAATAAACTAATATTATTTTATTCTAAATAATTTTGTATGAATAAAAAC
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAAC
* * * * * * *
17046980 AATTGTTTTATGACAAGACATAATGTCATGATGATTTAAAATAGATAATAGTTCAAATGGAT-AT
66 AATTGTTTTATGACAA-A-AAAAAGTCATAACGATTTGAAATAGATAATTGTTCAAATAG-TCAT
* * * * * *
17047044 GACTATTTGAACTTGTTTAGTAAAT-TACTTTATTTTTTAAATCTCCAACTCA
128 AACTATTTGAACTAGTTTACTAAATATA-TTTATTTTTTAAATCTTCTACTTA
* * * * *
17047096 TTAA-TTTTATAATATTAATAAATTAGTATTCTTTTATT-TGAATAAACTTATATAAATAGAAAC
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAAC
* * * * * *
17047159 AATTGTTTTTTGACATAACAAAAGATAATAACGATTTGAAATAAATAAGTG-TCTAATAGTCATA
66 AATTGTTTTATGACA-AAAAAAAG-TCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * *** *
17047223 ACTATTTGAACTCGCTCAGTAAACATATTTAAAATTTAAATCTTTTACTTA
129 ACTATTTGAACTAGTTTACTAAATATATTTATTTTTTAAATCTTCTACTTA
*
17047274 TTAATTTTTAGAATA--AATAAATTAGTATTATTTTATT-TCAAATAAGA-TTGCATGAATAGAA
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCT-AAATAA-ACTTGTATGAATAGAA
* *
17047335 ACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGTCA
64 ACAATTGTTTTATGACAAAA-AAAA-GTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCA
* *
17047400 TAACTATTTGAA-T-GTATTCACAAAATATATTTATTTTTTAAAT-TTTTACTTA
127 TAACTATTTGAACTAGT-TT-ACTAAATATATTTATTTTTTAAATCTTCTACTTA
* * * * * *
17047452 TTAATTTTTTGAACATGAATAAATTTA-TATTATTTTATTCAAAATAAACTTGCATGAACA-AAA
1 TTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAA
* * *
17047515 TCAATTATTTTATGACAAAATGAAAAGTCATAA-TATTTTGAAATAGATAATTGTTCAGATAGTC
65 -CAATTGTTTTATGACAAAA--AAAAGTCATAACGA-TTTGAAATAGATAATTGTTCAAATAGTC
** *** * * ** *
17047579 ATAACCGTTTGAACTTA-TTCGGTAAAAAGA-TT-TTTTTTAGTTC-TCTTACTCA
126 ATAACTATTTGAAC-TAGTTTACTAAATATATTTATTTTTTAAATCTTC-TACTTA
* * * * *
17047631 TTAATTCTTGGAATATTAATAAATTAGTATTATATTACTTC-AAA-AAAGCTTATATAAACT-G-
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTA-TTCTAAATAAA-CTTGTATGAA-TAGA
** * * *
17047692 AACGGTTATTTTATTACAAAAGAAAAGGTCATAATGATTTG--A-AG-TAA---TT---ATA---
63 AACAATTGTTTTATGACAAAA-AAAA-GTCATAACGATTTGAAATAGATAATTGTTCAAATAGTC
* * ** * * *
17047744 AT---TATTTGATCTAGTTCTATAAATAGA-ATTAT-TTTCTAAATATC-T-TACTTA
126 ATAACTATTTGAACTAG-TTTACTAA-ATATATT-TATTTTTTAA-ATCTTCTACTTA
* * * * * * *
17047795 TAAAATTTT-GAAATATTAATAAATTAGTTTTATTCTATTCCAAATAAGCTTGTATGAGCT-GAA
1 TTAATTTTTAG-AATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGA-ATAGAA
* * * * * * *
17047858 ATAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTTTTCATATAGTCT
64 ACAATTGTTTTATGACAAAA-AAAA-GTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * * *
17047923 TAACTATTTGAACTGGTTCGAC-AAACGA-ACTTAATTTTTAAATC-TCTTACTTA
127 TAACTATTTGAACTAGTT-TACTAAA-TATATTTATTTTTTAAATCTTC-TACTTA
* * * * * * * * * * * *
17047976 TTAATTTTCAAAATTTTACTAAATCAGTATTATTTTATTTTGAATAAGCTTTTATGAACATAAAT
1 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAAC
* * * * * * *
17048041 AATTATTTTATGATAAAACAAAAATTTATAACAATTTGAAATAGATAATTGTTCAAATAGTTATG
66 AATTGTTTTATGA-CAAA-AAAAAGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * *
17048106 ACTATTTGTACTAATTCGA-TAAACACATTTATTTTTTAAA---TAT-CTTA
129 ACTATTTGAACTAGTT-TACTAAATATATTTATTTTTTAAATCTTCTACTTA
** * * *
17048153 TTAATTCAT-GAAATATTAATAAATTAGTATTATTTTATT-TCAAATAAGCTTGTATG-TTGAAA
1 TTAATTTTTAG-AATATTAATAAATTAGTATTATTTTATTCT-AAATAAACTTGTATGAAT-AGA
* * * ** * *
17048215 AATAATTGTTTTATGATAAAACAAAAGGTAATAATAATTTGAAATAGTTAGTTGTTCAAAT
63 AACAATTGTTTTATGACAAAA-AAAA-GTCATAACGATTTGAAATAGATAATTGTTCAAAT
17048276 GGCCATAATT
Statistics
Matches: 1052, Mismatches: 226, Indels: 165
0.73 0.16 0.11
Matches are distributed among these distances:
161 2 0.00
162 6 0.01
163 8 0.01
164 49 0.05
165 43 0.04
166 3 0.00
167 1 0.00
168 4 0.00
169 3 0.00
171 2 0.00
172 2 0.00
174 3 0.00
175 6 0.01
176 75 0.07
177 186 0.18
178 183 0.17
179 165 0.16
180 148 0.14
181 153 0.15
182 9 0.01
183 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (179 bp):
TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAATAGAAAC
AATTGTTTTATGACAAAAAAAAGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAAC
TATTTGAACTAGTTTACTAAATATATTTATTTTTTAAATCTTCTACTTA
Found at i:17048061 original size:181 final size:180
Alignment explanation
Indices: 17047774--17048275 Score: 518
Period size: 181 Copynumber: 2.8 Consensus size: 180
17047764 AAATAGAATT
* * * * *
17047774 ATTTTCTAAATATCTTACTTATAAAATTTT-GAAATATTAATAAATTAGTTTTATTCTATTCCAA
1 ATTTT-TAAAT-TCTTACTTAT-TAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAA
* * * *
17047838 ATAAGCTTGTATGAGC-TGAAATAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTGAAAT
63 ATAAGCTTGTATGAACAT-AAATAATTGTTTTATGATAAAACAAAAGGTAATAACAATTTGAAAT
* * **
17047902 AAATAATTTTTCATATAGTCT-TAACTATTTGAACTGGTTCGACAAACGA-ACTTA
127 AAATAATTGTTCAAATAGT-TATAACTATTTGAACTAATTCGACAAAC-ACACTTA
* * * **
17047956 ATTTTTAAATCTCTTACTTATTAATTTTCAAAATTTTACTAAATCAGTATTATTTTATTTTGAAT
1 ATTTTTAAAT-TCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * ** * *
17048021 AAGCTTTTATGAACATAAATAATTATTTTATGATAAAACAAAAATTTATAACAATTTGAAATAGA
65 AAGCTTGTATGAACATAAATAATTGTTTTATGATAAAACAAAAGGTAATAACAATTTGAAATAAA
* * * *
17048086 TAATTGTTCAAATAGTTATGACTATTTGTACTAATTCGATAAACACATTTA
130 TAATTGTTCAAATAGTTATAACTATTTGAACTAATTCGACAAACACACTTA
* *
17048137 TTTTTTAAA-T-AT-CTTATTAA--TTCATGAAATATTAATAAATTAGTATTATTTTATTTCAAA
1 ATTTTTAAATTCTTACTTATTAATTTTCA--AAATATTAATAAATTAGTATTATTTTATTTCAAA
*** * * *
17048197 TAAGCTTGTATGTTGAAAAATAATTGTTTTATGATAAAACAAAAGGTAATAATAATTTGAAATAG
64 TAAGCTTGTATGAACATAAATAATTGTTTTATGATAAAACAAAAGGTAATAACAATTTGAAATAA
* *
17048262 TTAGTTGTTCAAAT
129 ATAATTGTTCAAAT
17048276 GGCCATAATT
Statistics
Matches: 267, Mismatches: 47, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
175 4 0.01
177 104 0.39
178 1 0.00
179 1 0.00
180 8 0.03
181 143 0.54
182 6 0.02
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
ATTTTTAAATTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAAATA
AGCTTGTATGAACATAAATAATTGTTTTATGATAAAACAAAAGGTAATAACAATTTGAAATAAAT
AATTGTTCAAATAGTTATAACTATTTGAACTAATTCGACAAACACACTTA
Found at i:17049654 original size:181 final size:180
Alignment explanation
Indices: 17048304--17050408 Score: 1557
Period size: 181 Copynumber: 11.7 Consensus size: 180
17048294 TAAGTCAGTA
* * ** * *
17048304 AATATTAATAAAGTAGTATTAATTTCTTT-TGGATAAGCTTTTATGAACTA-AAACAACTGTTTT
1 AATATTAATAAATTAGTATT-ATTTTTTTCTAAATAAGCTTGTATGAA-TAGAAACAATTGTTTT
* * * * *
17048367 ATGACAAAACAAAAGT-TCATATCGATTTTAAATAAATAATTGTTCAAATAGTCATAACTATTTT
64 ATGACAAAACAAAA-TATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTG
* * * * *
17048431 AATTTTTTTAGTAAATAGATTTATTTTTTCAAATCTCTAGCTTATTAATTTTTTG
128 AACTTGTTCAGTAAATAGATTTATTTTTT-AAATCTTTA-CTTATTAATTTTTAG
* * * * *
17048486 AATGTTAATCAATTAGTATTATTTTATTTC-AAATAAGCTTATATGAACT-GAAACAATTATTCT
1 AATATTAATAAATTAGTATTATTTT-TTTCTAAATAAGCTTGTATGAA-TAGAAACAATTGTTTT
* ** * * * * *
17048549 ATGACTAAACAAAAGGTCATAACAATTTCAAATAGATAATTATTCTAATAGTCATAACTATTTAA
64 ATGACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
** ** * * * *
17048614 ACGGGTTCGACAAACATATATATATATTTTAAATC-TT--TTATGAATTTTT-G
129 ACTTGTTC-AGTAA-ATAGATTTATTTTTTAAATCTTTACTTATTAATTTTTAG
* * * *
17048664 AAATATT-TTAAAATTAGTATT-TTTTTTATCTGAATAAGCTTGTATGATTTGAAACAATTGTTT
1 -AATATTAAT-AAATTAGTATTATTTTTT-TCTAAATAAGCTTGTATGAATAGAAACAATTGTTT
* * * * * * *
17048727 TATGAGAAAAC-GAAGATCATAATTATTTGAGATTGATATTTGTTCAAATAGTCATAACTATTTG
63 TATGACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTG
* * * * * * *
17048791 -AGTTGGTTTAGAAAACA-ATTT-GTTTTTACATCTCTTGCTTATTAATTTTT-G
128 AACTT-GTTCAGTAAATAGATTTATTTTTTAAATCT-TTACTTATTAATTTTTAG
* * ** * * * *
17048842 AAATATTAATAAAGTAGTGTTATTTTATTTC-GGATAAGTTTTTATGAATTGAAACAATTATTTT
1 -AATATTAATAAATTAGTATTATTTT-TTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTT
* * * * *
17048906 ATGACAAAACAAAA-AGTCATAAATGACTTCAAATAGATAATTGATCAAATAGT-AAAATCT-TT
64 ATGACAAAACAAAATA-TCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCATAA-CTATT
* * * * *
17048968 TAAAACTTATTCGGTAAATAGATTTATTTTTATAAATCTCTTGCTGATTAATTTTTCA-
126 T-GAACTTGTTCAGTAAATAGATTTATTTTT-TAAATCT-TTACTTATTAATTTTT-AG
* * * *
17049026 AATGTTAATAAATAAGTATTATTTTTTTTTAAATAAGCTTGTATGAACTA-AAATAATTGTTTTA
1 AATATTAATAAATTAGTATTATTTTTTTCTAAATAAGCTTGTATGAA-TAGAAACAATTGTTTTA
** * * *
17049090 TGACTAAAACAAAAGGTCATAA-TGATTTGAAATATATAATTGTTCTAATAGTCTTAACTATTTG
65 TGAC-AAAACAAAATATCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTG
** * * * * *
17049154 AA-TTGGTTTGGCAAACACATTTATTTTTTAAATTTTTTACTTATTAATTTTTGG
128 AACTT-GTTCAGTAAATAGATTTATTTTTTAAA-TCTTTACTTATTAATTTTTAG
* * * * *
17049208 AATATTATTAAATTAGTATTATTTTAATCCT-AATAAGCTTGTAT-AAAAGGAAACAATTGTTCT
1 AATATTAATAAATTAGTATTATTTT-TTTCTAAATAAGCTTGTATGAATA-GAAACAATTGTTTT
* * * * * * *
17049271 ATG-----ACAAAAT-T-ATAGCGATTCGAAATAGATAACTATTCAAATAATCATAACTATTTAA
64 ATGACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
* * * * * * *
17049329 ACTAT-TGCAATAAACAAATTTAGTTTTTAAATC--T-CTTATCAATTTTCA-
129 ACT-TGTTCAGTAAATAGATTTATTTTTTAAATCTTTACTTATTAATTTTTAG
* ** ** * * * ** * * *
17049377 AACTATTTATTGATCGGTAATATTTTATTCTGAATAAATTTGCATGAATATAAATAATTGTTTTA
1 AA-TATTAATAAATTAGTATTATTTTTTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * * *
17049442 TGACAAAACAGAATCTCATAA-TGATTTGAAATAGATAAATT-TTTAAATAGACATGACTATTTG
65 TGACAAAACAAAATATCATAACT-ATTTGAAATAGAT-AATTGTTCAAATAGTCATAACTATTTG
* * *
17049505 AACTTGTTCAGTAAATAGATTTAGTTTTTAAATCTCCTACCTATTAATTTTTAG
128 AACTTGTTCAGTAAATAGATTTATTTTTTAAATCT-TTACTTATTAATTTTTAG
* * *
17049559 ATTATTAATAAATTAGCATTATTTTTTTCTAAATAAACTTGTATGAATAGAAACAATTGTTTTAT
1 AATATTAATAAATTAGTATTATTTTTTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTAT
*
17049624 GACAAAACAAAATATCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAAC
66 GACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * *
17049689 TTGCTT-TGTAAATGGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGG
131 TTG-TTCAGTAAATAGATTTATTTTTTAAATC-TTTACTTATTAATTTTTAG
* * * *
17049740 AATATTAATAAATTTGTATTATTTTATTTC-AAA-AATGTTTGTATAAATAGAAACAATTGATTT
1 AATATTAATAAATTAGTATTATTTT-TTTCTAAATAA-GCTTGTATGAATAGAAACAATTGTTTT
* * * * * * *
17049803 ATGACAAAACAAAGTGTCATAACTACTTAAAATATATAATTGTTTAAATAATCATAACTATTTGA
64 ATGACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
* * * * * * *
17049868 A-TGTGTTCAGAAAACATATCT-TTTTTTGAATTTTTACTTATTAATTTTTTGG
129 ACT-TGTTCAGTAAATAGATTTATTTTTTAAATCTTTACTTATTAA-TTTTTAG
* * * * * **
17049920 AATATTAATAAATTTA-TATTATTTTATGCAAAAAAAG-TTGTTATGAACAGAAATGATTGTTTT
1 AATATTAATAAA-TTAGTATTATTTTTTTCTAAATAAGCTTG-TATGAATAGAAACAATTGTTTT
** * * *
17049983 ATGACAAAACAAAATGCCATAACAATTTGAAATAGATAATTGTTTAAATAGTCATAACAATTTGA
64 ATGACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
* ** * **
17050048 ATTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTTGCCCATTAATTTTTAG
129 ACTTGTTCAGTAAATAGATTTATTTTTTAAATCT-TTACTTATTAATTTTTAG
* * * * * * * *
17050101 ATTATTAATAAATTAATATTATTTTATTT-TGAATAAGCTTATATGAATTGATATAATTATTTTA
1 AATATTAATAAATTAGTATTATTTT-TTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * *
17050165 TGACAAAACAAAA-AGGTCATAA-TAATTTGAAATAAATAATTATTCAAATAGTTATGACTATTT
65 TGACAAAACAAAATA--TCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT
* * ** * *
17050228 GAACTTATTTAGTAAAT--ATTTATTTTAAAAATCTTTTACTTATTGATTGTT-G
127 GAACTTGTTCAGTAAATAGATTTATTTTTTAAATC-TTTACTTATTAATTTTTAG
* *** * * * *
17050280 AAATATTAATAAATTAATATTATTTTAACCCAAATATGCTTGTATGAACAAAAACAATTGTTTTA
1 -AATATTAATAAATTAGTATTATTTTTTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * *
17050345 TGA-AAAACAAAA-AGTCATAACGATTTGAAATATATAATTGTTCAAATCGTCATAACTATTTGA
65 TGACAAAACAAAATA-TCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
17050408 A
129 A
17050409 ATATATAATT
Statistics
Matches: 1523, Mismatches: 311, Indels: 182
0.76 0.15 0.09
Matches are distributed among these distances:
169 6 0.00
170 51 0.03
171 4 0.00
173 1 0.00
174 64 0.04
175 11 0.01
176 13 0.01
177 67 0.04
178 167 0.11
179 110 0.07
180 252 0.17
181 360 0.24
182 253 0.17
183 131 0.09
184 33 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
AATATTAATAAATTAGTATTATTTTTTTCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTAT
GACAAAACAAAATATCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
TTGTTCAGTAAATAGATTTATTTTTTAAATCTTTACTTATTAATTTTTAG
Found at i:17050013 original size:361 final size:359
Alignment explanation
Indices: 17048304--17050408 Score: 1122
Period size: 361 Copynumber: 5.9 Consensus size: 359
17048294 TAAGTCAGTA
* * * * ** * * * * *
17048304 AATATTAATAAAGTAGTATTAATTTCTTTTGGATAAGCTTTTATGAACTA-AAACAACTGTTTTA
1 AATATTAATAAATTAATATTATTTTATTTTCAAAAAGCTTATAT-AAATAGAAACAATTATTTTA
* * * * * * *
17048368 TGACAAAACAAAAGTTCAT-ATCGATTTTAAATAAATAATTGTTCAAATAGTCATAACTATTTTA
65 TGACAAAACAAAAGGTCATAAT-AACTTAAAATAAATAATTATTCAAATAATCATAACTATTTGA
* * * * ** * * * *
17048432 ATTTTTTTAGTAAATAGATTTATTTTTTCAAATC-TCTAGCTTATTAATTTTTTGAATGTTAATC
129 ACTTATTCAG-AAA-ATATTTA-TTTTAAAAATCTTTTA-CTTATTAATTTTTGGAATATTAATA
* * * * * * *
17048496 AA-TTAGTATTATTTTATTTC-AAATAAGCTTATATGAACTGAAACAATTATTCTATGACTAAAC
190 AATTTA-TATTATTTTA-TCCAAAAAAAG-TTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* * * * * * ** *
17048559 AAAAGGTCATAACAATTTCAAATAGATAATTATTCTAATAGTCATAACTATTTAAACGGGTTCGA
252 AAAATGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTG-
** * * * * *
17048624 CAAACATATATATATATTTTAAATCT-TT---TATGAATTTTT-G
316 GTAA-ATAGATTTATTTTTTAAATCTCTTACCCATTAATTTTTAG
* * * * * * * * *
17048664 AAATATT-TTAAAATTAGTATT-TTTT-TTATCTGAATAAGCTTGTATGATTTGAAACAATTGTT
1 -AATATTAAT-AAATTAATATTATTTTATT-T-TCAAAAAGCTTATATAAATAGAAACAATTATT
* * * * * * * ** * * *
17048726 TTATGAGAAAAC-GAAGATCATAATTATTTGAGATTGATATTTGTTCAAATAGTCATAACTATTT
62 TTATGACAAAACAAAAGGTCATAATAACTTAAAATAAATAATTATTCAAATAATCATAACTATTT
* * * * * * * * * *
17048790 G-AGTTGGTTTAGAAAACAATTTGTTTT-TACATCTCTTGCTTATTAATTTTTGAAATATTAATA
127 GAACTT-ATTCAGAAAA-TATTTATTTTAAAAATCTTTTACTTATTAATTTTTGGAATATTAATA
* * * ** * * ** *
17048853 AA-GTAGTGTTATTTTATTTC-GGATAAGTTTTTATGAATTGAAACAATTATTTTATGACAAAAC
190 AATTTA-TATTATTTTA-TCCAAAAAAAG-TTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* * * * * * * *
17048916 AAAAAGTCATAA-ATGACTTCAAATAGATAATTGATCAAATAGT-AAAATCT-TTTAAAACTTAT
252 AAAATGTCATAACA--ATTTGAAATAAATAATTGTTCAAATAGTCATAA-CTATTT-GAACTTGT
* * **
17048978 TCGGTAAATAGATTTATTTTTATAAATCTCTTGCTGATTAATTTTTCA-
313 TTGGTAAATAGATTTATTTTT-TAAATCTCTTACCCATTAATTTTT-AG
* * * * * *
17049026 AATGTTAATAAA-TAAGTATTATTTT-TTTTTAAATAAGCTTGTATGAACTA-AAATAATTGTTT
1 AATATTAATAAATTAA-TATTATTTTATTTTCAAA-AAGCTTATAT-AAATAGAAACAATTATTT
* * * * * * * *
17049088 TATGACTAAAACAAAAGGTCATAATGATTTGAAATATATAATTGTTCTAATAGTCTTAACTATTT
63 TATGAC-AAAACAAAAGGTCATAATAACTTAAAATAAATAATTATTCAAATAATCATAACTATTT
* ** * ** * *
17049153 GAA-TTGGTTTGGCAAACACATTTATTTTTTAAATTTTTTACTTATTAATTTTTGGAATATTATT
127 GAACTT-ATTCAG-AAA-ATATTTATTTTAAAAATCTTTTACTTATTAATTTTTGGAATATTAAT
* * * *
17049217 AAA-TTAGTATTATTTTAATCC-TAATAAGCTTGTAT-AAAAGGAAACAATTGTTCTATG-----
189 AAATTTA-TATTATTTT-ATCCAAAAAAAG-TTGTATGAACA-GAAACAATTGTTTTATGACAAA
* * * * * * * * *
17049274 ACAAAAT-T-ATAGCGATTCGAAATAGATAACTATTCAAATAATCATAACTATTTAAAC-T-ATT
250 ACAAAATGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTT
* * * * * *
17049335 GCAATAAACAAATTTAGTTTTTAAATCTCTT----ATCAATTTTCA-
315 G--GTAAATAGATTTATTTTTTAAATCTCTTACCCATTAATTTTTAG
* ** *** * * * * ** * * * *
17049377 AACTATTTATTGATCGGTAATATTTTATTCTGAATAAA-TTTGCATGAATATAAATAATTGTTTT
1 AA-TATTAATAAATTAATATTATTTTATTTTCAA-AAAGCTTATATAAATAGAAACAATTATTTT
* ** * * * * * *
17049441 ATGACAAAACAGAATCTCATAATGATTTGAAATAGATAAATT-TTTAAATAGA-CATGACTATTT
64 ATGACAAAACAAAAGGTCATAATAACTTAAAATAAAT-AATTATTCAAATA-ATCATAACTATTT
* * * ** * * *
17049504 GAACTTGTTCAGTAAATAGATTTAGTTTT-TAAATCTCCTACCTATTAATTTTTAGATTATTAAT
127 GAACTTATTCAG-AAA-ATATTTA-TTTTAAAAATCTTTTACTTATTAATTTTTGGAATATTAAT
* * * * * *
17049568 AAA-TTAGCATTATTTTTTTCTAAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAAC
189 AAATTTA-TATTA-TTTTATCCAAAAAAAGTTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* *
17049632 AAAATATCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGCTTT-
252 AAAATGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTTG
* * ** *
17049696 GTAAATGGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGG
316 GTAAATAGATTTATTTTTTAAATCTCTTACCCATTAATTTTTAG
** * *
17049740 AATATTAATAAATTTGTATTATTTTA-TTTCAAAAATGTTTGTATAAATAGAAACAATTGA-TTT
1 AATATTAATAAATTAATATTATTTTATTTTCAAAAA-GCTTATATAAATAGAAACAATT-ATTTT
* * *
17049803 ATGACAAAAC-AAAGTGTCATAACT-ACTTAAAATATATAATTGTTTAAATAATCATAACTATTT
64 ATGACAAAACAAAAG-GTCATAA-TAACTTAAAATAAATAATTATTCAAATAATCATAACTATTT
* **
17049866 GAA-TGTGTTCAGAAAACATATCTT-TTTT-TGAAT-TTTTACTTATTAATTTTTTGGAATATTA
127 GAACT-TATTCAG-AAA-ATAT-TTATTTTAAAAATCTTTTACTTATTAA-TTTTTGGAATATTA
* **
17049927 ATAAATTTATATTATTTTATGCAAAAAAAGTTGTTATGAACAGAAATGATTGTTTTATGACAAAA
187 ATAAATTTATATTATTTTATCCAAAAAAAGTTG-TATGAACAGAAACAATTGTTTTATGACAAAA
* * * * *
17049992 CAAAATGCCATAACAATTTGAAATAGATAATTGTTTAAATAGTCATAACAATTTGAATTTGTTTG
251 CAAAATGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTG
*
17050057 GTAAATAGATTTATTTTTTAAATCTCTTGCCCATTAATTTTTAG
316 GTAAATAGATTTATTTTTTAAATCTCTTACCCATTAATTTTTAG
* * * * * * *
17050101 ATTATTAATAAATTAATATTATTTTATTTTGAATAAGCTTATATGAATTGATATAATTATTTTAT
1 AATATTAATAAATTAATATTATTTTATTTTCAAAAAGCTTATATAAATAGAAACAATTATTTTAT
* * * * *
17050166 GACAAAACAAAAAGGTCATAATAATTTGAAATAAATAATTATTCAAATAGTTATGACTATTTGAA
66 GACAAAAC-AAAAGGTCATAATAACTTAAAATAAATAATTATTCAAATAATCATAACTATTTGAA
* * * * * *
17050231 CTTATTTAGTAAATATTTATTTTAAAAATCTTTTACTTATTGATTGTTGAAATATTAATAAATTA
130 CTTATTCAGAAAATATTTATTTTAAAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTT
* * * * * *
17050296 ATATTATTTTAACCCAAATATGCTTGTATGAACAAAAACAATTGTTTTATGA-AAAACAAAAAGT
195 ATATTATTTTATCCAAAAAAAG-TTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAATGT
* * *
17050360 CATAACGATTTGAAATATATAATTGTTCAAATCGTCATAACTATTTGAA
259 CATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAA
17050409 ATATATAATT
Statistics
Matches: 1386, Mismatches: 271, Indels: 175
0.76 0.15 0.10
Matches are distributed among these distances:
351 128 0.09
352 65 0.05
353 7 0.01
354 1 0.00
355 2 0.00
356 30 0.02
357 147 0.11
358 114 0.08
359 16 0.01
360 157 0.11
361 380 0.27
362 191 0.14
363 62 0.04
364 14 0.01
365 71 0.05
366 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (359 bp):
AATATTAATAAATTAATATTATTTTATTTTCAAAAAGCTTATATAAATAGAAACAATTATTTTAT
GACAAAACAAAAGGTCATAATAACTTAAAATAAATAATTATTCAAATAATCATAACTATTTGAAC
TTATTCAGAAAATATTTATTTTAAAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTTA
TATTATTTTATCCAAAAAAAGTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAATGTCA
TAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGAT
TTATTTTTTAAATCTCTTACCCATTAATTTTTAG
Found at i:17050406 original size:35 final size:35
Alignment explanation
Indices: 17050358--17050443 Score: 163
Period size: 35 Copynumber: 2.5 Consensus size: 35
17050348 AAAACAAAAA
*
17050358 GTCATAACGATTTGAAATATATAATTGTTCAAATC
1 GTCATAACTATTTGAAATATATAATTGTTCAAATC
17050393 GTCATAACTATTTGAAATATATAATTGTTCAAATC
1 GTCATAACTATTTGAAATATATAATTGTTCAAATC
17050428 GTCATAACTATTTGAA
1 GTCATAACTATTTGAA
17050444 CTGATTCAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (35 bp):
GTCATAACTATTTGAAATATATAATTGTTCAAATC
Found at i:17050715 original size:182 final size:178
Alignment explanation
Indices: 17050393--17050987 Score: 540
Period size: 180 Copynumber: 3.3 Consensus size: 178
17050383 TGTTCAAATC
* * * *
17050393 GTCATAACTATTTGAAATATATAATTGTTCAAATCGTCATAACTATTTGAAC-TGATTCAGTAAA
1 GTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTGA-TAAA
* ** * * *
17050457 CATATTTATTTCTTAATTCTTTTACTTATTAATTATCTGAATGTTAATAAATTTGCATTATTTTA
64 CATATTTATTT-TTAAATCCCTTACTTATTAATT-TTTGAATATTAATAAATTAGCATTATTTT-
* *
17050522 ATT--GAAATAAGCTTGTATGAATAGAAAAAAATTATTTTATGACAAAACAAAAG
126 ATTCCG-AATAAGCTTGTATAAATAG-AAATAATTATTTTATGACAAAACAAAAG
* * * ** *
17050575 GTTATAGCGATTTGAAATAGGTAAATGTTCAAATAGTCATAACTATTTGAACTTGCTTGATAAAC
1 GTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTGATAAAC
* * ** *
17050640 ATATTTAGTTTTTAAATCCCTTAGTTATTAATTTTTGTAGTATTAATAAATTAAAATTATGTTAT
65 ATATTTA-TTTTTAAATCCCTTACTTATTAATTTTTG-AATATTAATAAATTAGCATTATTTTAT
* * * *
17050705 TCCGAATAAGCTTGTACAAATAGAAATAATTGTTTTGTGACAAAATAAAAG
128 TCCGAATAAGCTTGTATAAATAGAAATAATTATTTTATGACAAAACAAAAG
* * * * * ***
17050756 GTCATAATAATTTGAAATAAATTATTGTTCAAACAGTAATAACTATTTG--CTTTGGTGA-GGCC
1 GTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAAC-TTGTTGATAAAC
* * * *
17050818 AATGAATTCATTTTTTAATCCGTTACTTATTAATTTTTAGACTATTAATAAATTAGCATTATTTT
65 -AT--ATTTATTTTTAAATCCCTTACTTATTAATTTTT-GAATATTAATAAATTAGCATTATTTT
* * *
17050883 ATTCCAAATAAGAC-TGTATCAATAGAAATAATTATTTTATAACAAAACAAATA-
126 ATTCCGAATAAG-CTTGTATAAATAGAAATAATTATTTTATGACAAAACAAA-AG
** * * ** *
17050936 GTCATAACGGTTTGAAACAAATAATTGTTCAAATTGTTTTAACTAATTGAAC
1 GTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAAC
17050988 CGGTTTAGTA
Statistics
Matches: 334, Mismatches: 65, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
178 1 0.00
179 6 0.02
180 130 0.39
181 76 0.23
182 112 0.34
183 9 0.03
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (178 bp):
GTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTGATAAACA
TATTTATTTTTAAATCCCTTACTTATTAATTTTTGAATATTAATAAATTAGCATTATTTTATTCC
GAATAAGCTTGTATAAATAGAAATAATTATTTTATGACAAAACAAAAG
Found at i:17052927 original size:181 final size:179
Alignment explanation
Indices: 17052624--17055468 Score: 1454
Period size: 181 Copynumber: 16.0 Consensus size: 179
17052614 AAAGCTAACA
* * *
17052624 AAACAAATTTATTTTTTAAA--TC-T-GTTATTAATTATTAAAATATTAATAAATTAATATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * * * * * *
17052685 TTATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTACGATAAAACAAAAGGTTATAACAA
66 TTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAA
* * * *
17052750 TTTAAAATACATAATTATTCATATAGCCTTAACTATTTGAACTGGTTTAAC
131 TTTGAAATACATAATTGTTCA-ATAGTCATAACTATTTGAACTGGTTT-AC
* * * * * * *
17052801 GAACAAATTTATTTTTTAAATCTCTTAGTTATTAA-TATTCATAATATTATTATATTAGTATTAT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAATATTAT
* * * * * * *
17052865 TTTATTCTAAATAAACTTGTATGAATATAAATAATTGTTTTATGACAAAATAAAAAGTTATAACG
65 TTTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACA
*
17052930 ATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTT--
130 ATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGTTTAC
*** **
17052979 -GGTAAATGGA-----T-AATCTCTTACTTATTAATTTTTGAAATATTAA-AAACTTAATATTAT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAATATTAT
* * *
17053036 TTTATTCTGAATAAGCTTGTATG-ATGAAAAACAATTGTTTTATGACAAAACAAAA-CTTCATAA
65 TTTATTCTAAATAAGCTTATATGAAT-AAAAACAATTGTTTTATGACAAAACAAAAGGTT-ATAA
* ** * * ** *
17053099 CAATTTTAAATAGC-TAATTGCCCAA-ATGACCATAACTATTTGAATTCATTTGAT
128 CAATTTGAAATA-CATAATTGTTCAATA-G-TCATAACTATTTGAACTGGTTT-AC
*** * * * *
17053153 AAATTGATTTATTTTTTAAAATCTCTAACTTCTCAATTTTTGAAATATTAATAAAGTAATATTAT
1 AAACAAATTTATTTTTT-AAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* ** * * * * * * * *
17053218 TTTATTTTGGATAAGCTTTTATAAACT-AAAATAATAGTTATATGATAAAACAAAAGGTCATAAT
65 TTTATTCTAAATAAGCTTATATGAA-TAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAAC
* * ** * *
17053282 GATTTTAAATTGATAATTGTCCGAATAGTCATAACTATTTGAACTGGTTTGAT
129 AATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGTTT-AC
* * * *
17053335 AAACAGATTTATTTTTTAAATCTCTTA-TTATTAATTTTTTGAAATATTAATAGATTAGTATTAC
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAA-TTTTTGAAATATTAATAAATTAATATTAT
* * * * * * * * * *
17053399 TTTACTCCAAACAAACTTATATGAACAAAAACATTTGTTTAATGGCAAAACAAAAGGTCATAACG
65 TTTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACA
* * * * * *
17053464 ACTTGAAATAAATAACTATTCAA-AGGT-ATAATTATTTGAACTGG-TTAGGT
130 ATTTGAAATACATAATTGTTCAATA-GTCATAACTATTTGAACTGGTTTA--C
* * *
17053514 AAACAGAA-TTA---TTTAAATCTATTACTTATTAATTTTTTAAATATTAATAAATTCACT-TTA
1 AAACA-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATT-AATATTA
* * * *
17053574 TTTTATT-TCGAATAAGC-TAGTATGAATTGAAAA-AATTGTTTTA-GACAAAACAAAATGTCAT
64 TTTTATTCT-AAATAAGCTTA-TATGAA-TAAAAACAATTGTTTTATGACAAAACAAAAGGTTAT
* * * * * * * *
17053635 AACATTTTGAAATAGATAATTGCTCATATAGTCTTAAATATTTGAATTAGTTCAAC
126 AACAATTTGAAATACATAATTGTTCA-ATAGTCATAACTATTTGAACTGGTT-TAC
* * * * * * *
17053691 AAATAAATCTATTTTTTAATTCT-TTAAGTTATTAATTTTTGAAATATTATTAGATTAGTATTAT
1 AAACAAATTTATTTTTTAAATCTCTT-ACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* * * * * * **
17053755 TTTATTCCAAATAAGCTCATATGAACATAAATAATTGTTTTATGACAAAACAAAAGGTTATTATG
65 TTTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACA
* * ** * * * **
17053820 GTTTGAAGTGTACAATTGTTCAAATAGTCATAACTATTTAAACTAGTTCGGC
130 ATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGTT-TAC
* *
17053872 -AACTAGATTTAATTTTTCAAATCTCTTACTTATTAATTTTTG------------A--AATATTA
1 AAAC-AAATTT-ATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTA
* * * * * *
17053922 TTTTATTCTGAATAAGCTTGA-ATGATAAAAAAACATTTGTTATATGACCAAACAAAAGATTAAT
64 TTTTATTCTAAATAAGCTT-ATATGA-ATAAAAACAATTGTTTTATGACAAAACAAAAGGTT-AT
* * * * * * * * * *
17053986 AGCGATTTGAAA-AGCATAATCGTTGAAATAG-CAATAATTATTTAAAATGATTCGAT
126 AACAATTTGAAATA-CATAATTGTT-CAATAGTC-ATAACTATTTGAACTGGTT-TAC
* * * * **
17054042 AAATAGATTCACTTTTTAAA--TC--ACTTATTAATTTTTGAAATATTAATAAATTTGTATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * *** * * * * * * *
17054103 TTATTTTGAATAAAAATGTATGAACT-GAAACAATTATTTTATGACTAAACAAAAGGTCAAAACG
66 TTATTCTAAATAAGCTTATATGAA-TAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACA
* * * *
17054167 ATTTTAAATAGATAATTGTTCTAATAGTCTTAAACTATTTGAATTGGTTTAAC
130 ATTTGAAATACATAATTGTTC-AATAGTCAT-AACTATTTGAACTGGTTT-AC
* * * * * ** ** *
17054220 AAATACATTTATTTTTTAAATCTCTTACTTATAAACTTTT-AGAATATTATTAGTTTAGCAATAT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAATATTA-
* * * * * * * * *
17054284 TTTTCTTC-GAATAAGTTTGTATGAACAGAAACAATTGTTTTATGATAAAAC-AAAGATCT-TAT
64 TTTTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGT-TATAA
* * * * * * *
17054346 TAATTTGAGATAGATAATCGTTCAAATAGTCATAATTATTTGAACTGGTCTGAT
128 CAATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGT-TTAC
* * * * * *
17054400 AAATAGATTTAGTTTTTAAA-ATC-T-CTTATTAATTTGTGAAATATTAATAAATTAGTATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * ** ** * * * * * * * *
17054462 TTATTATGAATAATTTTGCATGAATAGAAATAATTATTTTATAATAAAACAAAATGTCATAACGA
66 TTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAA
* * * ** * * * **
17054527 TTTGAAGTAGATAATTGTTCAAACAGAAATAAGTATTTCAACTTGTTTGGT
131 TTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGTTT-AC
* * * *
17054578 AAATAGATTTATTTTTTAAATCT-TAAACTTATTAATTTTT-AGAATATTAATAAATTAGTATTA
1 AAACAAATTTATTTTTTAAATCTCT-TACTTATTAATTTTTGA-AATATTAATAAATTAATATTA
* * * * * ** *
17054641 TTTTATTTCGAACA-AA-CTTGTATAAATAGCAAA-AATTGTTTTATGATAAAACAAAATATCAT
64 TTTTA-TTCTAA-ATAAGCTTATATGAATA-AAAACAATTGTTTTATGACAAAACAAAAGGTTAT
* * * * * * *
17054703 AGCAATTTGAAATAAATAATTATTTAAATAGTC--AACTATTTGAACTCGCTTAGT
126 AACAATTTGAAATACATAATT-GTTCAATAGTCATAACTATTTGAACTGGTTTA-C
*
17054757 AAACAAATTTATTTTTTAAATCAT-TTACTTATTAATTTTTGAAATTTTAATAAATTAGA-ATTA
1 AAACAAATTTATTTTTTAAATC-TCTTACTTATTAATTTTTGAAATATTAATAAATTA-ATATTA
* * * * * * * *
17054820 -TTTATT-TCAAATAAGCTTTTATTAACAGAAACAATTGGTTTATGACAAAATAAAAAAGTCATA
64 TTTTATTCT-AAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAA-CAAAAGGTTATA
** ** * * *
17054883 ATGATTTGAAATAGGTAATTGTTTAAATAGTCATAACTATTTGAA-TGTGTTCAGA
127 ACAATTTGAAATACATAATTG-TTCAATAGTCATAACTATTTGAACTG-GTTTA-C
* * * * * * * *
17054938 AAACATATTTATTTTTTAAA-CTTTTACTTATTAATGTTTGGAATTTTAGTAAGTTTATATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * * * * * * * * * * **
17055002 TTATT-TAGAATAAGTTTGTATGAACATAAAGAATTGTTTTGTGATAAGATAAAAGATCATAATG
66 TTATTCTA-AATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACA
* ** * * *
17055066 A-TTGAAAATAGATAATTACTCAAATA-TCAAAAACTATTTGAACTTGTTTAGT
130 ATTTG-AAATACATAATTGTTC-AATAGTC-ATAACTATTTGAACTGGTTTA-C
* * * * *
17055118 AAACAGATTTATTTTTTAAATCTCGTACTCATTAATTTTTGAAATATTAATAAGTTAGTATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * * * * ** *
17055183 TTATT-TCGAATAAGCATATATGAACT-GATACAATTGTCTTATGATGAAACAAAAGGTCATAAC
66 TTATTCT-AAATAAGCTTATATGAA-TAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAAC
* * * ** * * * ** * *
17055246 AATTTGAAATAGAAAATTATTCAAATA-TTTTTACTACTTAAACTTATTCAGT
129 AATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACTGGTTTA-C
* * ** *
17055298 AAAC--ATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATT
1 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * * ** * * * *
17055361 TTAAAT-TGAATAAGCTTGTATGAGCAAAAGA-AATTGTCTTATGACAAAACAAAAAGTCATAAT
66 TT-ATTCTAAATAAGCTTATATGAATAAAA-ACAATTGTTTTATGACAAAACAAAAGGTTATAAC
* * *
17055424 AATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACT
129 AATTTGAAATACATAATTGTTC-AATAGTCATAACTATTTGAACT
17055469 TATTTGGTAA
Statistics
Matches: 2079, Mismatches: 448, Indels: 280
0.74 0.16 0.10
Matches are distributed among these distances:
165 15 0.01
167 2 0.00
168 26 0.01
169 39 0.02
170 53 0.03
171 120 0.06
172 5 0.00
175 41 0.02
176 70 0.03
177 157 0.08
178 279 0.13
179 189 0.09
180 244 0.12
181 580 0.28
182 240 0.12
183 17 0.01
184 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
TTATTCTAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAA
TTTGAAATACATAATTGTTCAATAGTCATAACTATTTGAACTGGTTTAC
Found at i:17054499 original size:359 final size:353
Alignment explanation
Indices: 17053990--17055468 Score: 1159
Period size: 359 Copynumber: 4.1 Consensus size: 353
17053980 ATTAATAGCG
* * * * * * * *
17053990 ATTTGAAA-AGCATAATCGTTGAAATAG-CAATAATTATTTAAAATGATTCGA-TAAATAGATTC
1 ATTTGAAATAG-ATAATCATTCAAATAGTCAATAACTATTTGAACTGGTT-GAGTAAACAGATTT
* * *
17054052 ACTTTTT-AAATCACTTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTATTTTGAATAA
64 A-TTTTTAAAATCTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
*** * * *
17054116 AAATGTATGAACT-GAAACAATTATTTTATGACTAAACAAAAGGTCAAAACGATTTTAAATAGAT
128 TTTTG-ATGAA-TAGAAACAATTATTTTATGACTAAACAAAAAGTCATAACGATTTGAAATAGAT
*
17054180 AATTGTTCTAATAGTCTTAAACTATTTGAATTGGTTTAACAAATACATTTATTTTTTAAATCTCT
191 AATTGTTCTAATAGTCAT-AACTATTTGAATTGGTTTAA-AAATACATTTATTTTTTAAATCT-T
* * *
17054245 TACTTATAAACTTTTAGAATATTATTAGTTTAGCAATATTTT-TCTTCGAATAAGTTTGTATGAA
253 TACTTATTAA-TTTTAGAATATTATTAGTTTAGTATTATTTTAT-TTCGAATAAGTTTGTATGAA
* *
17054309 CAGAAACAATTGTTTTATGATAAAACAAAGATCTTATTA
316 CAGAAA-AATTGTTTTATGATAAAACAAAGATCATAATA
* * * *
17054348 ATTTGAGATAGATAATCGTTCAAATAGTC-ATAATTATTTGAACTGGTCTGA-TAAATAGATTTA
1 ATTTGAAATAGATAATCATTCAAATAGTCAATAACTATTTGAACTGGT-TGAGTAAACAGATTTA
*
17054411 GTTTTTAAAATCTCTTATTAATTTGTGAAATATTAATAAATTAGTATTATTTTATTAT-GAATAA
65 -TTTTTAAAATCTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TCGAATAA
* * * *
17054475 TTTTGCATGAATAGAAATAATTATTTTAT-AATAAAACAAAATGTCATAACGATTTGAAGTAGAT
128 TTTTG-ATGAATAGAAACAATTATTTTATGACT-AAACAAAAAGTCATAACGATTTGAAATAGAT
* * ** * * ** *
17054539 AATTGTTCAAACAGAAATAAGTATTTCAACTT-GTTTGGTAAATAGATTTATTTTTTAAATCTTA
191 AATTGTTCTAATAGTCATAACTATTTGAA-TTGGTTT-AAAAATACATTTATTTTTTAAATCTT-
* * ** * ** * *
17054603 AACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCGAACAAACTTGTATAAAT
253 TACTTATTAA-TTTTAGAATATTATTAGTTTAGTATTATTTTATTTCGAATAAGTTTGTATGAAC
* **
17054668 AGCAAAAATTGTTTTATGATAAAACAAAATATCATAGCA
317 AG-AAAAATTGTTTTATGATAAAAC-AAAGATCATAATA
* * * * *
17054707 ATTTGAAATAAATAATTATTTAAATAGTC---AACTATTTGAACTCGCTT-AGTAAACAAATTTA
1 ATTTGAAATAGATAATCATTCAAATAGTCAATAACTATTTGAACT-GGTTGAGTAAACAGATTTA
* * * *
17054768 TTTTTTAAATCATTTACTTATTAATTTTTGAAATTTTAATAAATTAGAATTA-TTTATTTCAAAT
65 -TTTTTAAA--ATCT-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * ** * * *
17054832 AAGCTTTT-ATTAACAGAAACAATTGGTTTATGACAAAATAAAAAAGTCATAATGATTTGAAATA
126 AA--TTTTGATGAATAGAAACAATTATTTTATGACTAAA-CAAAAAGTCATAACGATTTGAAATA
* * * *
17054896 GGTAATTGTT-TAAATAGTCATAACTATTTGAA-TGTGTTCAGAAAACATATTTATTTTTTAAA-
188 GATAATTGTTCT-AATAGTCATAACTATTTGAATTG-GTTTA-AAAATACATTTATTTTTTAAAT
* * * *
17054958 CTTTTACTTATTAATGTTTGGAATTTTAGTAAGTTTA-TATTATTTTATTTAGAATAAGTTTGTA
250 C-TTTACTTATTAAT-TTTAGAATATTA-TTAGTTTAGTATTATTTTATTTCGAATAAGTTTGTA
* * *
17055022 TGAACATAAAGAATTGTTTTGTGATAAGATA-AAAGATCATAATG
312 TGAACAGAAA-AATTGTTTTATGATAA-A-ACAAAGATCATAATA
* * * * *
17055066 A-TTGAAAATAGATAATTACTCAAATA-TCAAAAACTATTTGAACTTGTTTAGTAAACAGATTTA
1 ATTTG-AAATAGATAATCATTCAAATAGTCAATAACTATTTGAACTGGTTGAGTAAACAGATTTA
* *
17055129 TTTTTTAAATCTCGTACTCATTAATTTTTGAAATATTAATAAGTTAGTATTATTTTATTTCGAAT
65 TTTTTAAAATCTC-T--T-ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * * * * * *
17055194 AAGCATAT-ATGAACT-GATACAATTGTCTTATGA-TGAAACAAAAGGTCATAACAATTTGAAAT
126 AA--TTTTGATGAA-TAGAAACAATTATTTTATGACT-AAACAAAAAGTCATAACGATTTGAAAT
* * * ** * * * * * **
17055256 AGAAAATTATTCAAATA-TTTTTACTACTTAAACTT-ATTCAGTAA-ACATTTATTTTTTAAATC
187 AGATAATTGTTCTAATAGTCATAACTATTTGAA-TTGGTTTAAAAATACATTTATTTTTTAAATC
* * * ** * *
17055318 TTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAAATT-GAATAAGCTTGTAT
251 -TTTACTTATTAATT-TTAGAATATTATTAGTTTAGTATTATTTT-ATTTCGAATAAGTTTGTAT
* * * * *
17055382 GAGCAAAAGAAATTGTCTTATGACAAAACAAAAAGTCATAATA
313 GAACAGAA-AAATTGTTTTATGATAAAACAAAGA-TCATAATA
* * *
17055425 ATTTGAAATAAATAATTATTCAAATAGTC-ATAACTATTTAAACT
1 ATTTGAAATAGATAATCATTCAAATAGTCAATAACTATTTGAACT
17055469 TATTTGGTAA
Statistics
Matches: 902, Mismatches: 162, Indels: 113
0.77 0.14 0.10
Matches are distributed among these distances:
356 1 0.00
357 34 0.04
358 206 0.23
359 387 0.43
360 141 0.16
361 93 0.10
362 40 0.04
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (353 bp):
ATTTGAAATAGATAATCATTCAAATAGTCAATAACTATTTGAACTGGTTGAGTAAACAGATTTAT
TTTTAAAATCTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAATTT
TGATGAATAGAAACAATTATTTTATGACTAAACAAAAAGTCATAACGATTTGAAATAGATAATTG
TTCTAATAGTCATAACTATTTGAATTGGTTTAAAAATACATTTATTTTTTAAATCTTTACTTATT
AATTTTAGAATATTATTAGTTTAGTATTATTTTATTTCGAATAAGTTTGTATGAACAGAAAAATT
GTTTTATGATAAAACAAAGATCATAATA
Found at i:17054970 original size:540 final size:535
Alignment explanation
Indices: 17052624--17055468 Score: 2111
Period size: 540 Copynumber: 5.3 Consensus size: 535
17052614 AAAGCTAACA
* * *
17052624 AAACAAATTTATTTTTTAAATC--T-GTTATTAATTATTAAAATATTAATAAATTA-ATATTATT
1 AAACAAATTTATTTTTTAAATCTTTACTTATTAATTTTTGAAATATTAATAAATTAGA-ATTATT
* * * * * * * * * * *
17052685 TTATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTACGATAAAACAAAAGGTTATAACAA
65 TTATTTCAAATAAGCTTTTATGAAC-AAAACAATTGGTTTATGACAAAACAAAAAGTCATAATAA
* * * * * * * ** *
17052750 TTTAAAATACATAATTATTCATATAGCCTTAACTATTTGAACTGGTTTA-ACGAACAAATTTATT
129 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGATAAACAGATTTATT
* * * * * *
17052814 TTTTAAATCTCTTAGTTATTAATATTCATAATATTATTATATTAGTATTATTTTATTCTAAATAA
194 TTTTAAATCTCTTACTTATTAATTTTGA-AATATTAATAAATTAGTATTATTTTATTCTGAATAA
* * * * *
17052879 ACTTGTATGAATATAAATAATTGTTTTATGACAAAATAAAAAGTTATAACGATTTGAAATATATA
258 ACTTGTATGAATAAAAATAATTGTTTTATGATAAAA-CAAAAGTCATAACGATTTGAAATAGATA
** * * **
17052944 ATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGGTAAATGGA--TA------ATCTCTTACT
322 ATTGTTCAAATAGAAATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTTACT
* *
17053001 TATTAATTTTTGAAATATTAA-AAACTTAATATTATTTTA-TTCTGAATAAGCTTGTAT-GATGA
387 TATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTC-GAATAAGCTTGTATAAATG-
* * * **
17053063 AAAACAATTGTTTTATGACAAAACAAAACT-TCATAACAATTTTAAATAGCTAATTGCCCAAAT-
449 -AAA-AATTGTTTTATGATAAAACAAAA-TGTCATAACAATTTGAAATAGATAATTGTTCAAATA
* *
17053126 GACCATAACTATTTGAATTC-ATTTGAT
511 G-TC-TAACTATTTGAATTCGATTAG-T
*** * * * *
17053153 AAATTGATTTATTTTTTAAAATCTCTAACTTCTCAATTTTTGAAATATTAATAAAGTA-ATATTA
1 AAACAAATTTATTTTTT-AAATCT-TTACTTATTAATTTTTGAAATATTAATAAATTAGA-ATTA
*** * * * * *
17053217 TTTTATTTTGGATAAGCTTTTATAAACTAAAATAA-TAGTTATATGATAAAACAAAAGGTCATAA
63 TTTTATTTCAAATAAGCTTTTATGAAC-AAAACAATTGGTT-TATGACAAAACAAAAAGTCATAA
* * * * * *
17053281 TGATTTTAAATTGATAATTGTCCGAATAGTCATAACTATTTGAACTGGTT-TGATAAACAGATTT
126 TAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGATAAACAGATTT
* * * **
17053345 ATTTTTTAAATCTCTTA-TTATTAATTTTTTGAAATATTAATAGATTAGTATTACTTTACTCCAA
191 ATTTTTTAAATCTCTTACTTATTAA--TTTTGAAATATTAATAAATTAGTATTATTTTATTCTGA
* * * * * * ** *
17053409 ACAAACTTATATGAACAAAAACATTTGTTTAATGGCAAAACAAAAGGTCATAACGACTTGAAATA
254 ATAAACTTGTATGAATAAAAATAATTGTTTTATGATAAAACAAAA-GTCATAACGATTTGAAATA
* * * ** * * * * *
17053474 AATAACTATTC-AA-AGGTATAATTATTTGAACTGGTTAGGTAAACAGA---ATTATTTAAATCT
318 GATAATTGTTCAAATAGAAATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATC-
* * *
17053534 ATTACTTATTAATTTTTTAAATATTAATAAATTCACT-TTATTTTATTTCGAATAAGCTAGTATG
382 -TTACTTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTATTTCGAATAAGCTTGTAT-
* * * * *
17053598 AATTGAAAAAATTGTTTTA-GACAAAACAAAATGTCATAACATTTTGAAATAGATAATTGCTCAT
444 AAATG-AAAAATTGTTTTATGATAAAACAAAATGTCATAACAATTTGAAATAGATAATTGTTCAA
* * **
17053662 ATAGTCTTAAATATTTGAATTAG-TTCAAC
508 ATAGTC-TAACTATTTGAATTCGATT-AGT
* * * * * * *
17053691 AAATAAATCTATTTTTTAATTCTTTAAGTTATTAATTTTTGAAATATTATTAGATTAGTATTATT
1 AAACAAATTTATTTTTTAAATCTTT-ACTTATTAATTTTTGAAATATTAATAAATTAGAATTATT
* ** * * * * * **
17053756 TTATTCCAAATAAGCTCATATGAACATAAATAATTGTTTTATGACAAAACAAAAGGTTATTATGG
65 TTATTTCAAATAAGCTTTTATGAACA-AAACAATTGGTTTATGACAAAACAAAAAGTCATAATAA
* * * * **
17053821 TTTGAAGT-GTACAATTGTTCAAATAGTCATAACTATTTAAACTAGTTC-G-GCAACTAGATTTA
129 TTTGAAATAG-ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGATAAAC-AGATTT-
* *
17053883 ATTTTTCAAATCTCTTACTTATTAA---T----T-TT--TGAA--A-TATTATTTTATTCTGAAT
191 ATTTTTTAAATCTCTTACTTATTAATTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAAT
* * * * ** * *
17053935 AAGCTTGAATG-ATAAAAAAACATTTGTTATATGACCAAACAAAAGATTAATAGCGATTTGAAA-
256 AAACTTGTATGAATAAAAATA-A-TTGTTTTATGATAAAACAAAAG--TCATAACGATTTGAAAT
* * * * ** * * * *
17053998 AGCATAATCGTTGAAATAGCAATAATTATTT-AAAATGATTCGATAAATAGATTCACTTTTTAAA
317 AG-ATAATTGTTCAAATAGAAATAACTATTTGAACTTG-TTTGGTAAATAGATTTATTTTTTAAA
* * ***
17054062 TC--ACTTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTATTTTGAATAAAAATGTATG
380 TCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTAT-
* * * * * * *
17054125 AACTGAAACAATTATTTTATGACT-AAACAAAAGGTCAAAACGATTTTAAATAGATAATTGTTCT
444 AAATGAAA-AATTGTTTTATGA-TAAAACAAAATGTCATAACAATTTGAAATAGATAATTGTTCA
* * **
17054189 AATAGTCTTAAACTATTTGAATTGGTTTAAC
507 AATAGTC-T-AACTATTTGAATTCGATTAGT
* * * * * **
17054220 AAATACATTTATTTTTTAAATCTCTTACTTATAAACTTTT-AGAATATTATTAGTTTAGCAA-TA
1 AAACAAATTTATTTTTTAAATCT-TTACTTATTAATTTTTGA-AATATTAATAAATTAG-AATTA
* * * * *
17054283 TTTT-TCTTCGAATAAG-TTTGTATGAACAGAAACAATTGTTTTATGATAAAACAAAGA-TCTTA
63 TTTTAT-TTCAAATAAGCTTT-TATGAACA-AAACAATTGGTTTATGACAAAACAAAAAGTCATA
* * * * * *
17054345 TTAATTTGAGATAGATAATCGTTCAAATAGTCATAATTATTTGAACTGG-TCTGATAAATAGATT
125 ATAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGATAAACAGATT
* * *
17054409 TAGTTTTTAAA-ATC-T-CTTATTAATTTGTGAAATATTAATAAATTAGTATTATTTTATTATGA
190 TATTTTTTAAATCTCTTACTTATTAATTT-TGAAATATTAATAAATTAGTATTATTTTATTCTGA
** * * * * *
17054471 ATAATTTTGCATGAATAGAAATAATTATTTTATAATAAAACAAAATGTCATAACGATTTGAAGTA
254 ATAAACTTGTATGAATAAAAATAATTGTTTTATGATAAAACAAAA-GTCATAACGATTTGAAATA
* * *
17054536 GATAATTGTTCAAACAGAAATAAGTATTTCAACTTGTTTGGTAAATAGATTTATTTTTTAAATCT
318 GATAATTGTTCAAATAGAAATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCT
* *
17054601 TAAACTTATTAATTTTT-AGAATATTAATAAATTAGTATTATTTTATTTCGAACAAACTTGTATA
383 T--ACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATA
* * * * *
17054665 AATAGCAAAAATTGTTTTATGATAAAACAAAATATCATAGCAATTTGAAATAAATAATTATTTAA
445 AAT-G-AAAAATTGTTTTATGATAAAACAAAATGTCATAACAATTTGAAATAGATAATTGTTCAA
* *
17054730 ATAGTC-AACTATTTGAACTCGCTTAGT
508 ATAGTCTAACTATTTGAATTCGATTAGT
*
17054757 AAACAAATTTATTTTTTAAATCATTTACTTATTAATTTTTGAAATTTTAATAAATTAGAATTA-T
1 AAACAAATTTATTTTTTAAATC-TTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATT
* * *
17054821 TTATTTCAAATAAGCTTTTATTAACAGAAACAATTGGTTTATGACAAAATAAAAAAGTCATAATG
65 TTATTTCAAATAAGCTTTTATGAACA-AAACAATTGGTTTATGACAAAA-CAAAAAGTCATAATA
* * *
17054886 ATTTGAAATAGGTAATTGTTTAAATAGTCATAACTATTTGAA-TGTGTTCAGA-AAACATATTTA
128 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTG-GTTCAGATAAACAGATTTA
* * * * *
17054949 TTTTTTAAA-CTTTTACTTATTAATGTTTGGAATTTTAGTAAGTTTA-TATTATTTTATT-TAGA
192 TTTTTTAAATCTCTTACTTATTAAT-TTTGAAATATTAATAA-ATTAGTATTATTTTATTCT-GA
** * * * * * * *
17055011 ATAAGTTTGTATGAACATAAAGAATTGTTTTGTGATAAGATAAAAGATCATAATGA-TTGAAAAT
254 ATAAACTTGTATGAATAAAAATAATTGTTTTATGATAAAACAAAAG-TCATAACGATTTG-AAAT
** * * *
17055075 AGATAATTACTCAAATATCAAA-AACTATTTGAACTTGTTTAGTAAACAGATTTATTTTTTAAAT
317 AGATAATTGTTCAAATA-GAAATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAAT
* * * *
17055139 CTCGTACTCATTAATTTTTGAAATATTAATAAGTTAGTATTATTTTATTTCGAATAAGCATATAT
381 CT--TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTAT
* * * * * * *
17055204 GAACTGATACAATTGTCTTATGATGAAACAAAAGGTCATAACAATTTGAAATAGAAAATTATTCA
444 -AAATGA-AAAATTGTTTTATGATAAAACAAAATGTCATAACAATTTGAAATAGATAATTGTTCA
* * * * *
17055269 AATATTTTTACTACTTAAACTT--ATTCAGT
507 AATAGTCTAACTATTTGAA-TTCGATT-AGT
* ** *
17055298 AAAC--ATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATT
1 AAACAAATTTATTTTTTAAATC-TTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATT
* * * * *
17055361 TTAAATT-GAATAAGCTTGTATGAGCAAAAGAAATT-GTCTTATGACAAAACAAAAAGTCATAAT
65 TT-ATTTCAAATAAGCTTTTATGAACAAAA-CAATTGGT-TTATGACAAAACAAAAAGTCATAAT
* * *
17055424 AATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACT
127 AATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
17055469 TATTTGGTAA
Statistics
Matches: 1844, Mismatches: 355, Indels: 223
0.76 0.15 0.09
Matches are distributed among these distances:
523 7 0.00
524 30 0.02
525 20 0.01
526 25 0.01
527 81 0.04
528 115 0.06
529 127 0.07
530 11 0.01
531 11 0.01
532 29 0.02
533 18 0.01
534 225 0.12
535 7 0.00
536 108 0.06
537 228 0.12
538 179 0.10
539 195 0.11
540 391 0.21
541 35 0.02
542 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (535 bp):
AAACAAATTTATTTTTTAAATCTTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATTT
TATTTCAAATAAGCTTTTATGAACAAAACAATTGGTTTATGACAAAACAAAAAGTCATAATAATT
TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGATAAACAGATTTATTTT
TTAAATCTCTTACTTATTAATTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAAACT
TGTATGAATAAAAATAATTGTTTTATGATAAAACAAAAGTCATAACGATTTGAAATAGATAATTG
TTCAAATAGAAATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTTACTTATT
AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATAAATGAAAAATT
GTTTTATGATAAAACAAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCTAACTAT
TTGAATTCGATTAGT
Found at i:17056097 original size:16 final size:17
Alignment explanation
Indices: 17056076--17056108 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
17056066 TAACAATTTA
17056076 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
17056092 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
17056109 TGAATTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:17056120 original size:177 final size:180
Alignment explanation
Indices: 17055792--17056198 Score: 436
Period size: 177 Copynumber: 2.3 Consensus size: 180
17055782 AAATCTATTA
* * * * *
17055792 CTTATTAATTTTTAAAATATTAATAAATTTGTATTACTTTATT-TCGAATAAGATTGTATGAATA
1 CTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCT-GAACAAGATTATATGAACA
* ** * ** * *
17055856 AAAATAATTATTTTATGACAAAACAAATGGTTATAATGATTTGAAATAAATAATTGTTCAAATAG
65 AAAACAATTATTTTATGACAAAACAAAAAGTAATAACAATTTAAAATAAATAATTATTCAAATAG
* * * *
17055921 TTATAGCTGATTAAACTAGTTTGATAA-AGAGAT-TTATATTTTAAA-T-TT-
130 TCATAGATGATTAAACTAGTTTGACAACAGAAATATT-T-TTTTAAACTCTTG
*
17055969 CTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTCTGAACAA-ACTTATATGAACA
1 CTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTGAACAAGA-TTATATGAACA
* * *
17056033 AAAACATTTGTTTTATGACAAAACAAAAAGTAATAACAATTTAAAATAGATAATTATTCAAATAG
65 AAAACAATTATTTTATGACAAAACAAAAAGTAATAACAATTTAAAATAAATAATTATTCAAATAG
* * * *
17056098 TCATA-ATTATTTGAATTAGTTTGGCAAGCAGAAATATTTTTTTAAATCTCTTG
130 TCATAGATGA-TTAAACTAGTTTGACAA-CAGAAATATTTTTTTAAA-CTCTTG
* *
17056151 CTTATTAAATTTTT-GAATGTTAATAAATTAGTATTATTTTATTCTGAA
1 CTTATT-AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTGAA
17056199 ATAATTATTT
Statistics
Matches: 191, Mismatches: 28, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
176 3 0.02
177 125 0.65
178 8 0.04
179 6 0.03
180 3 0.02
181 2 0.01
182 37 0.19
183 7 0.04
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.43
Consensus pattern (180 bp):
CTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTGAACAAGATTATATGAACAA
AAACAATTATTTTATGACAAAACAAAAAGTAATAACAATTTAAAATAAATAATTATTCAAATAGT
CATAGATGATTAAACTAGTTTGACAACAGAAATATTTTTTTAAACTCTTG
Found at i:17056246 original size:163 final size:162
Alignment explanation
Indices: 17056043--17056353 Score: 376
Period size: 163 Copynumber: 1.9 Consensus size: 162
17056033 AAAACATTTG
* *
17056043 TTTTATGACAAAACAAAAAGTAATAACAATTTAAAATAGATAATTATTCAAATAGTCATAATTAT
1 TTTTATGACAAAACAAAAAGTAAGAACAATTTAAAATAGATAATTATTCAAATAGTCATAACTAT
* * * * *
17056108 TTGAATTAGTTTGGCAAGCAGAAATATTTTTTTAAATCTCTTGCTTA-TTAAATTTTT-GAATGT
66 TTGAACTAGTTAGGCAAACAGAAATA-TTTTTTAAATCTCTTAC-TAGTT-AATTTTTAGAATAT
17056171 TAATAAATTAGTA-TTATTTTATTCTGAAATAATTA
128 TAATAAATTA-TAGTTATTTTATTCTGAAATAATTA
* * ** ** * *
17056206 TTTTATGACAAAACAAAATGTCAGAATGATTTGTAATAGATAATTATTCTAATAGTCTTAACTAT
1 TTTTATGACAAAACAAAAAGTAAGAACAATTTAAAATAGATAATTATTCAAATAGTCATAACTAT
* * * ** *
17056271 TTGAGCTGGTTAGGCAAACATATTTATTTTTTAAATCTCTTACTAGTTAATTTTTAGAATATTAT
66 TTGAACTAGTTAGGCAAACAGAAATATTTTTTAAATCTCTTACTAGTTAATTTTTAGAATATTAA
17056336 TAAATTATAGTTATTTTA
131 TAAATTATAGTTATTTTA
17056354 ATATGAATAC
Statistics
Matches: 124, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
161 11 0.09
162 40 0.32
163 73 0.59
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.43
Consensus pattern (162 bp):
TTTTATGACAAAACAAAAAGTAAGAACAATTTAAAATAGATAATTATTCAAATAGTCATAACTAT
TTGAACTAGTTAGGCAAACAGAAATATTTTTTAAATCTCTTACTAGTTAATTTTTAGAATATTAA
TAAATTATAGTTATTTTATTCTGAAATAATTA
Found at i:17057039 original size:96 final size:96
Alignment explanation
Indices: 17056925--17057119 Score: 257
Period size: 96 Copynumber: 2.0 Consensus size: 96
17056915 ATAGTCATAG
* * * *
17056925 CTATTTGAACTTGTTCAGTAAACAGATTCGTTTTTTCAAATCTCTTATTAATTTTT-GAAATATT
1 CTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAAATCTCTGATTAATTTTTAG-AATATT
17056989 AAAAAATTAGTATTATTTTATTTCAAATAAAC
65 AAAAAATTAGTATTATTTTATTTCAAATAAAC
* * * * * *
17057021 CTATTTAAACTTGTTCAGTTAATAGCTTTATTTTTTAAAATCTCTGATTAGTTTTTAGAATATTT
1 CTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAAATCTCTGATTAATTTTTAGAATATTA
* **
17057086 AAAAATTAGTGTTATTTTATTTTGAATAAAC
66 AAAAATTAGTATTATTTTATTTCAAATAAAC
17057117 CTA
1 CTA
17057120 CATGAACTGA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
96 84 0.99
97 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.48
Consensus pattern (96 bp):
CTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAAATCTCTGATTAATTTTTAGAATATTA
AAAAATTAGTATTATTTTATTTCAAATAAAC
Found at i:17057284 original size:128 final size:128
Alignment explanation
Indices: 17057148--17057396 Score: 306
Period size: 128 Copynumber: 1.9 Consensus size: 128
17057138 TTTTATGATG
* * * * *
17057148 AAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATAG-TTATGACTATTTGAACTTG
1 AAACAAAAGGTCATAACAATTTGAAATAAAGAATTATTCAAATAGCTTA--ACTATTTGAACTGG
** * * *
17057212 TTTGGTAAACATATTTA-TTTTAAAATCTTTTACTTATTAATTGTCGAAAA-ATTATTTTACAAC
64 TTCAGCAAACAAATTTATTTTTAAAATCTCTTACTTATTAATTGTC-AAAATATTATTTTACAAC
17057275 A
128 A
* *
17057276 AAACAAAAGGTCATAACAATTTGAAATAAAGAATTGTTCATATAGCCTTAACTATTTGAACTGGT
1 AAACAAAAGGTCATAACAATTTGAAATAAAGAATTATTCAAATAG-CTTAACTATTTGAACTGGT
* * *
17057341 TCAGCAAACAAATTTATTTTTTAAATCTCTTATTTATTAATTTTCAAAATATTATT
65 TCAGCAAACAAATTTATTTTTAAAATCTCTTACTTATTAATTGTCAAAATATTATT
17057397 ACATAATAAT
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
128 69 0.68
129 30 0.29
130 3 0.03
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (128 bp):
AAACAAAAGGTCATAACAATTTGAAATAAAGAATTATTCAAATAGCTTAACTATTTGAACTGGTT
CAGCAAACAAATTTATTTTTAAAATCTCTTACTTATTAATTGTCAAAATATTATTTTACAACA
Found at i:17057920 original size:182 final size:181
Alignment explanation
Indices: 17057597--17057986 Score: 462
Period size: 182 Copynumber: 2.1 Consensus size: 181
17057587 TATTTTATTC
* * *
17057597 CAAATAGGCTCATAATTATTTGAACTAATTTGATAAACTGATTTATTTTTTAAATATCTAACTTA
1 CAAATA-G-TCATAACTATTTGAATTAATTTGACAAACTGATTTATTTTTTAAATATCTAACTTA
* * * * * * * * *
17057662 TCAATTTTTGAAATATTAACAAAGTGATATTATTTTATTTCGAATAAGCTTTTATGCACTGAAAC
64 TCAATTTTTGAAATATTAACAAAGTAATATTATTATATTCCAAATAAGCATGTACGAACTAAAAC
* * *
17057727 AATTGTTTTATGA-TAAAATAAAAGGTTATAATGATTTCAAATAGATAATTGTT
129 AATTATTTTATGACT-AAACAAAAGGTTAGAATGATTTCAAATAGATAATTGTT
* * *
17057780 CAAATAGTCATAACTATTTGAATTTATTTGACAAA-TAGATTTATTTTTTAAAATTTCTTACTTA
1 CAAATAGTCATAACTATTTGAATTAATTTGACAAACT-GATTTATTTTTT-AAATATCTAACTTA
* * * * *
17057844 TTAATTTTCT-AAATGTTAATAAATTAATATTATTATATTCCAAATAAGCATGTACGAATTAAAA
64 TCAATTTT-TGAAATATTAACAAAGTAATATTATTATATTCCAAATAAGCATGTACGAACTAAAA
*
17057908 CAATTATTTTATGACTAAACAAAAGGTTAGAATGATTTGAAATAGATAATTGTT
128 CAATTATTTTATGACTAAACAAAAGGTTAGAATGATTTCAAATAGATAATTGTT
* *
17057962 CTAATAGTCTTTAACTATTTGAATT
1 CAAATAGTC-ATAACTATTTGAATT
17057987 GGTTTAGCAA
Statistics
Matches: 176, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
180 1 0.01
181 36 0.20
182 117 0.66
183 22 0.12
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (181 bp):
CAAATAGTCATAACTATTTGAATTAATTTGACAAACTGATTTATTTTTTAAATATCTAACTTATC
AATTTTTGAAATATTAACAAAGTAATATTATTATATTCCAAATAAGCATGTACGAACTAAAACAA
TTATTTTATGACTAAACAAAAGGTTAGAATGATTTCAAATAGATAATTGTT
Found at i:17058566 original size:210 final size:210
Alignment explanation
Indices: 17058156--17058547 Score: 509
Period size: 210 Copynumber: 1.9 Consensus size: 210
17058146 AACTTGTTCA
* *
17058156 GTAAATAAATTTATTTTTTAAATCTCAAACTTATTAACTTTTAGAATATTAATAAATTAGTATTA
1 GTAAACAAATTTATTTTTTAAATATCAAACTTATTAACTTTTAGAATATTAATAAATTAGTATTA
* * * * *
17058221 TTTTATTTTGTATAAACTTGTATGAATAAAAAAAATTATTTTATGACAAAATAAAAGATCATAAT
66 TTTTATTTTGAATAAACTTGTATGAACAAAAAAAATTAGTTTATAACAAAATAAAAGATCATAAC
* * * * ** *
17058286 GATCTGAAATAAATAATTATTCAGATAGTCATAACTATTTGAACTTGCTTGGTACACAAATTTAT
131 GATCTGAAATAAATAATTATTCAAATAGTCAGAACTATTTAAACGTGCTTCATACAAAAATTTAT
17058351 TTAAAAAGTTGCTTG
196 TTAAAAAGTTGCTTG
*** * * *
17058366 GTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTGGAATATTAATAAATTAGTGTTA
1 GTAAACAAATTTATTTTTTAAATATCAAACTTATTAACTTTTAGAATATTAATAAATTAGTATTA
* * * * * *
17058431 TTTTATTTTGAATAAGCTTGTATGAACAGAAATAATTAGTTTATAACAAAATAAATGGTTATAAC
66 TTTTATTTTGAATAAACTTGTATGAACAAAAAAAATTAGTTTATAACAAAATAAAAGATCATAAC
* * *
17058496 GATTTGAAATAGATACTTATTCAAAT-GTCAGAACTATTTAAACGTG-TTCATA
131 GATCTGAAATAAATAATTATTCAAATAGTCAGAACTATTTAAACGTGCTTCATA
17058548 AAATAGATTT
Statistics
Matches: 154, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
208 4 0.03
209 17 0.11
210 133 0.86
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (210 bp):
GTAAACAAATTTATTTTTTAAATATCAAACTTATTAACTTTTAGAATATTAATAAATTAGTATTA
TTTTATTTTGAATAAACTTGTATGAACAAAAAAAATTAGTTTATAACAAAATAAAAGATCATAAC
GATCTGAAATAAATAATTATTCAAATAGTCAGAACTATTTAAACGTGCTTCATACAAAAATTTAT
TTAAAAAGTTGCTTG
Found at i:17059280 original size:182 final size:179
Alignment explanation
Indices: 17058866--17059578 Score: 561
Period size: 181 Copynumber: 3.9 Consensus size: 179
17058856 AATAAAATAG
* *
17058866 ATAAACATATTTATTTTTTTAAATCTTATACTTATTAATTGTTGAAATATTAATAAAATAATATT
1 ATAAACATATTTA-TTTTTTAAATCTT-TACTTATTAATTTTTG-AATATTAATAAAATTATATT
** * * *
17058931 ATTTTAATCCAAATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATAA
63 ATTTTCTTCAAAATAAGCTTGTATAAACAGAAACAATCATTTTATGACAAAACAAAAAGTCATAA
* * * * * *
17058996 AAATTTGAAATAGATAATTGTTCTATTAGTCATAACAATTTGAACTTGTTCG
128 AAATTTCAAATAGATAATTATTCAAATAGTCATAACAATTTGAAATTGTTCA
* *
17059048 GTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTCTT-AATATTAATAAATTTATATT
1 ATAAACATATTTATTTTTTAAATC-TTTACTTATTAATT-T-TTGAATATTAATAAAATTATATT
* * * *
17059112 ATTTTCTTCAAAATAAGCTTGTATAAATAGAAGA-AATCATCTTT-TGGCTAAACAAAAAGGTTA
63 ATTTTCTTCAAAATAAGCTTGTATAAACAGAA-ACAATCAT-TTTATGACAAAACAAAAA-GTCA
** *
17059175 TAGCAATTTCAAATAGATAATTATTCAAATAGTCAT-ACTTATTT-AAATTAGTTCA
125 TAAAAATTTCAAATAGATAATTATTCAAATAGTCATAAC-AATTTGAAATT-GTTCA
* * *
17059230 AT-AA-ATAGTTTCATTTTTTAAATCTCTTAATTATTAATTTTTAGAATATTAAT-TACTTAGTA
1 ATAAACATA-TTT-ATTTTTTAAATCT-TTACTTATTAATTTTT-GAATATTAATAAAATTA-TA
*** * * * ** * *
17059292 TTATTTTCTTTTGAATAAGCTTATATGAACTA-AAATAATTTTTTTATGACAAAA-GAAAACTCA
61 TTATTTTCTTCAAAATAAGCTTGTATAAAC-AGAAACAATCATTTTATGACAAAACAAAAAGTCA
** * * * ** ** *
17059355 TAATGATTT-GAATGGATAATTATTCAAATAGCCATAACTTTTTGATCTAGTTCA
125 TAAAAATTTCAAATAGATAATTATTCAAATAGTCATAACAATTTGAAATTGTTCA
* * * * *
17059409 GTAAACATATTTATTTTTAAAATTTTTTACTTATTAATTATAGAAATATTAAT-AAATTAGTATT
1 ATAAACATATTTATTTTTTAAA-TCTTTACTTATTAATTTTTG-AATATTAATAAAATTA-TATT
* * * * * ** * * *
17059473 ATTTTAATTC-GAATAAACTTGTATAAATAGAAACTATTGTTTTATAACAGAACAAAAAGTCTTA
63 ATTTT-CTTCAAAATAAGCTTGTATAAACAGAAACAATCATTTTATGACAAAACAAAAAGTCATA
* * * * *
17059537 ATAATTTGAAATAAATAATTACTCAAATAGTAATAACAATTT
127 AAAATTTCAAATAGATAATTATTCAAATAGTCATAACAATTT
17059579 AAACTGGTTT
Statistics
Matches: 424, Mismatches: 80, Indels: 55
0.76 0.14 0.10
Matches are distributed among these distances:
178 2 0.00
179 109 0.26
180 40 0.09
181 139 0.33
182 131 0.31
183 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (179 bp):
ATAAACATATTTATTTTTTAAATCTTTACTTATTAATTTTTGAATATTAATAAAATTATATTATT
TTCTTCAAAATAAGCTTGTATAAACAGAAACAATCATTTTATGACAAAACAAAAAGTCATAAAAA
TTTCAAATAGATAATTATTCAAATAGTCATAACAATTTGAAATTGTTCA
Found at i:17059834 original size:17 final size:17
Alignment explanation
Indices: 17059814--17059871 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
17059804 ATAAATTTAT
*
17059814 TATTTATATATAATAAA
1 TATTAATATATAATAAA
*
17059831 TATTAATATATAGTAAA
1 TATTAATATATAATAAA
* *
17059848 AATTAGATAATATTATAAA
1 TATTA-AT-ATATAATAAA
17059867 TATTA
1 TATTA
17059872 TAATTATAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 19 0.58
18 2 0.06
19 12 0.36
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TATTAATATATAATAAA
Found at i:17059840 original size:19 final size:19
Alignment explanation
Indices: 17059818--17059871 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
17059808 ATTTATTATT
17059818 TATATATAATAAATATTA-A
1 TATATAT-ATAAATATTAGA
17059837 TATATAGTA-AAA-ATTAGA
1 TATATA-TATAAATATTAGA
17059855 TA-ATATTATAAATATTA
1 TATATA-TATAAATATTA
17059872 TAATTATAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 9 0.30
18 9 0.30
19 11 0.37
20 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (19 bp):
TATATATATAAATATTAGA
Found at i:17059968 original size:18 final size:18
Alignment explanation
Indices: 17059945--17059981 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
17059935 TTCGATATTT
*
17059945 TAATTAATAATTTATTAA
1 TAATTAATAAGTTATTAA
17059963 TAATTAATAAGTTATTAA
1 TAATTAATAAGTTATTAA
17059981 T
1 T
17059982 TATATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TAATTAATAAGTTATTAA
Found at i:17060349 original size:31 final size:31
Alignment explanation
Indices: 17060289--17060350 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
17060279 ATAAAAATCA
* *
17060289 TTATAAAATTTATTTATAATTACTTATTAAT
1 TTATAAAATATATTTATAATTACTGATTAAT
17060320 TTATAAAA-ATATTTATAAATTA-TCGATTAAT
1 TTATAAAATATATTTAT-AATTACT-GATTAAT
17060351 AATGTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (31 bp):
TTATAAAATATATTTATAATTACTGATTAAT
Found at i:17061109 original size:12 final size:12
Alignment explanation
Indices: 17061068--17061110 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
17061058 TAATATTAAT
17061068 TAATTATAAATTA
1 TAATT-TAAATTA
*
17061081 T-ATTTGAATTAA
1 TAATTTAAATT-A
17061093 TAATTTAAATTA
1 TAATTTAAATTA
17061105 TAATTT
1 TAATTT
17061111 TTATAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 5 0.19
12 12 0.46
13 9 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
TAATTTAAATTA
Found at i:17063554 original size:3 final size:3
Alignment explanation
Indices: 17063516--17063566 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
17063506 ACATAAAAGC
* * *
17063516 AAT AATT AAT AAAT AAC AAT AAC AAT AAT AAC AAT AAT AAT AAT AAT
1 AAT AA-T AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
17063563 AAT A
1 AAT A
17063567 TTATTATTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:17063571 original size:3 final size:3
Alignment explanation
Indices: 17063565--17063614 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
17063555 ATAATAATAA
* *
17063565 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17063613 TA
1 TA
17063615 ATAAAAATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:17063925 original size:23 final size:23
Alignment explanation
Indices: 17063895--17063962 Score: 127
Period size: 23 Copynumber: 3.0 Consensus size: 23
17063885 AATTTGCTAA
*
17063895 CACACATGGATTAAGAGATGGAG
1 CACACATGGATTAGGAGATGGAG
17063918 CACACATGGATTAGGAGATGGAG
1 CACACATGGATTAGGAGATGGAG
17063941 CACACATGGATTAGGAGATGGA
1 CACACATGGATTAGGAGATGGA
17063963 ATTAATATGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.37, C:0.13, G:0.32, T:0.18
Consensus pattern (23 bp):
CACACATGGATTAGGAGATGGAG
Found at i:17067953 original size:34 final size:34
Alignment explanation
Indices: 17067915--17067983 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
17067905 AGAGAGATAA
*
17067915 TATGTGGGTATAGACTTCTAGAAAGAATTATCTC
1 TATGTGGGTATAGACTTCTAGAAAGAACTATCTC
17067949 TATGTGGGTATAGACTTCTAGAAAGAACTATCTC
1 TATGTGGGTATAGACTTCTAGAAAGAACTATCTC
17067983 T
1 T
17067984 GATAACACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (34 bp):
TATGTGGGTATAGACTTCTAGAAAGAACTATCTC
Found at i:17068638 original size:21 final size:22
Alignment explanation
Indices: 17068614--17068655 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
17068604 ATATTTCACT
*
17068614 TGAAGAAAAA-AAAATAAAAAA
1 TGAAAAAAAAGAAAATAAAAAA
17068635 TGAAAAAAAAGAAAATAAAAA
1 TGAAAAAAAAGAAAATAAAAA
17068656 GAGGATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (22 bp):
TGAAAAAAAAGAAAATAAAAAA
Found at i:17069316 original size:18 final size:16
Alignment explanation
Indices: 17069284--17069344 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
17069274 AAAGGCAATT
*
17069284 GAAAACAAG-AGAAAA
1 GAAAAAAAGAAGAAAA
17069299 GAAAATAAAGGAAGAAAAA
1 GAAAA-AAA-GAAG-AAAA
17069318 GAAGAAAAAGAAGAGAAA
1 GAA-AAAAAGAAGA-AAA
17069336 GAAACAAAA
1 GAAA-AAAA
17069345 TGAAAGATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 5 0.13
16 2 0.05
17 3 0.08
18 16 0.42
19 10 0.26
20 2 0.05
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.02
Consensus pattern (16 bp):
GAAAAAAAGAAGAAAA
Found at i:17069321 original size:9 final size:9
Alignment explanation
Indices: 17069285--17069338 Score: 56
Period size: 9 Copynumber: 5.8 Consensus size: 9
17069275 AAGGCAATTG
*
17069285 AAAACAAGA
1 AAAAGAAGA
17069294 GAAAAGAA-A
1 -AAAAGAAGA
17069303 ATAAAGGAAGA
1 A-AAA-GAAGA
17069314 AAAAGAAGA
1 AAAAGAAGA
17069323 AAAAGAAGA
1 AAAAGAAGA
*
17069332 GAAAGAA
1 AAAAGAA
17069339 ACAAAATGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 24 0.62
10 12 0.31
11 2 0.05
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (9 bp):
AAAAGAAGA
Found at i:17069643 original size:35 final size:35
Alignment explanation
Indices: 17069597--17069749 Score: 98
Period size: 35 Copynumber: 4.4 Consensus size: 35
17069587 TTAGTTCTAT
*
17069597 TCATCTTTATTTTTTAATTTACGATTTCGTCTCAA
1 TCATCTTTATTTTTTAATTTACGATTTCATCTCAA
* * * ** ***
17069632 TCATCTTTATTTCTTGATTTAGGGCTT-AGTCTTGG
1 TCATCTTTATTTTTTAATTTACGATTTCA-TCTCAA
* * * * *
17069667 TCAACTTTATTTTTTGACTTGCGATTTCATACT-GA
1 TCATCTTTATTTTTTAATTTACGATTTCAT-CTCAA
* *
17069702 TCATCTTTATTTTCTAACTTGTA-G-TTTCATCTCAG
1 TCATCTTTATTTTTTAA-TT-TACGATTTCATCTCAA
17069737 TCATCTTTATTTT
1 TCATCTTTATTTT
17069750 CTTGACTTGC
Statistics
Matches: 88, Mismatches: 24, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
34 2 0.02
35 80 0.91
36 5 0.06
37 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (35 bp):
TCATCTTTATTTTTTAATTTACGATTTCATCTCAA
Found at i:17069745 original size:70 final size:69
Alignment explanation
Indices: 17069666--17069894 Score: 200
Period size: 70 Copynumber: 3.3 Consensus size: 69
17069656 CTTAGTCTTG
* *
17069666 GTCAACTTTATTTT-TTGACTTGCGATTTCATACTGATCATCTTTATTTTCTAACTTGTAGTTTC
1 GTCATCTTTATTTTCTTGACTTGC-ATTTCATACTG-TCATCTTTATTTTCTAACTTGTGGTTTC
17069730 ATCTCA
64 ATCTCA
* * * *
17069736 GTCATCTTTATTTTCTTGACTTGCAACTTCGT-CTTGGTCATCTTTATTTTTTGACTTGTGGTTT
1 GTCATCTTTATTTTCTTGACTTGC-ATTTCATAC-T-GTCATCTTTATTTTCTAACTTGTGGTTT
** *
17069800 TGTC-CC
63 CATCTCA
* * * * * *
17069806 GTCATTTTTATTTTCTTGACTTACAGTTT-AGACCCTGTCATCTATATTTCCCAACTTGTGGTTT
1 GTCATCTTTATTTTCTTGACTTGCA-TTTCATA--CTGTCATCTTTATTTTCTAACTTGTGGTTT
17069870 CAT-TCCA
63 CATCT-CA
17069877 GTCATCTTTATTTT-TTGA
1 GTCATCTTTATTTTCTTGA
17069895 TTTACGGTTT
Statistics
Matches: 126, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
69 1 0.01
70 67 0.53
71 56 0.44
72 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (69 bp):
GTCATCTTTATTTTCTTGACTTGCATTTCATACTGTCATCTTTATTTTCTAACTTGTGGTTTCAT
CTCA
Found at i:17069750 original size:35 final size:35
Alignment explanation
Indices: 17069666--17069890 Score: 118
Period size: 35 Copynumber: 6.4 Consensus size: 35
17069656 CTTAGTCTTG
* * * *
17069666 GTCAACTTTATTTTTTGACTTG-CGATTTCATACTGA
1 GTCATCTTTATTTTCTGACTTGTAG-TTTCAT-CTCA
*
17069702 -TCATCTTTATTTTCTAACTTGTAGTTTCATCTCA
1 GTCATCTTTATTTTCTGACTTGTAGTTTCATCTCA
* ** * **
17069736 GTCATCTTTATTTTCTTGACTTGCAACTTCGTCTTG
1 GTCATCTTTATTTTC-TGACTTGTAGTTTCATCTCA
* * ** *
17069772 GTCATCTTTATTTTTTGACTTGTGGTTTTGTC-CC
1 GTCATCTTTATTTTCTGACTTGTAGTTTCATCTCA
* ** * * *
17069806 GTCATTTTTATTTTCTTGACTTACAGTTT-AGACCCT
1 GTCATCTTTATTTTC-TGACTTGTAGTTTCA-TCTCA
* * ** *
17069842 GTCATCTATATTTCCCAACTTGTGGTTTCAT-TCCA
1 GTCATCTTTATTTTCTGACTTGTAGTTTCATCT-CA
17069877 GTCATCTTTATTTT
1 GTCATCTTTATTTT
17069891 TTGATTTACG
Statistics
Matches: 140, Mismatches: 41, Indels: 17
0.71 0.21 0.09
Matches are distributed among these distances:
34 16 0.11
35 82 0.59
36 42 0.30
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (35 bp):
GTCATCTTTATTTTCTGACTTGTAGTTTCATCTCA
Found at i:17069793 original size:106 final size:105
Alignment explanation
Indices: 17069597--17069793 Score: 265
Period size: 106 Copynumber: 1.9 Consensus size: 105
17069587 TTAGTTCTAT
* * * **
17069597 TCATCTTTATTTTTTAATTTACGATTTCGTCTCAATCATCTTTATTTCTTGATTTAGGGCTTAGT
1 TCATCTTTATTTTCTAATTTACGATTTCATCTCAATCATCTTTATTTCTTGACTTAGAACTTAGT
17069662 CTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACTGA
66 CTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACTGA
*
17069702 TCATCTTTATTTTCTAACTTGTA-G-TTTCATCTCAGTCATCTTTATTTTCTTGACTT-GCAACT
1 TCATCTTTATTTTCTAA-TT-TACGATTTCATCTCAATCATCTTTA-TTTCTTGACTTAG-AACT
* *
17069764 TCGTCTTGGTCATCTTTATTTTTTGACTTG
62 TAGTCTTGGTCAACTTTATTTTTTGACTTG
17069794 TGGTTTTGTC
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
105 35 0.44
106 43 0.54
107 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.52
Consensus pattern (105 bp):
TCATCTTTATTTTCTAATTTACGATTTCATCTCAATCATCTTTATTTCTTGACTTAGAACTTAGT
CTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACTGA
Found at i:17069834 original size:106 final size:105
Alignment explanation
Indices: 17069597--17069834 Score: 248
Period size: 106 Copynumber: 2.3 Consensus size: 105
17069587 TTAGTTCTAT
* * * * **
17069597 TCATCTTTATTTTTTAATTTAC-GATTTCGTCTCAATCATCTTTATTTCTTGATTTAGGGCTTAG
1 TCATCTTTATTTTCTAACTTACAG-TTTCATCTCAATCATCTTTATTTCTTGACTTAGAACTTAG
*
17069661 TCTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACTGA
65 TCTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACCGA
** * *
17069702 TCATCTTTATTTTCTAACTTGTAGTTTCATCTCAGTCATCTTTATTTTCTTGACTT-GCAACTTC
1 TCATCTTTATTTTCTAACTTACAGTTTCATCTCAATCATCTTTA-TTTCTTGACTTAG-AACTTA
* * * ** *
17069766 GTCTTGGTCATCTTTATTTTTTGACTTGTGGTTTTGTCCCG-
64 GTCTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACCGA
* *
17069807 TCATTTTTATTTTCTTGACTTACAGTTT
1 TCATCTTTATTTTC-TAACTTACAGTTT
17069835 AGACCCTGTC
Statistics
Matches: 108, Mismatches: 21, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
105 50 0.46
106 58 0.54
ACGTcount: A:0.17, C:0.18, G:0.12, T:0.53
Consensus pattern (105 bp):
TCATCTTTATTTTCTAACTTACAGTTTCATCTCAATCATCTTTATTTCTTGACTTAGAACTTAGT
CTTGGTCAACTTTATTTTTTGACTTGCGATTTCATACCGA
Found at i:17070508 original size:3 final size:3
Alignment explanation
Indices: 17070500--17070535 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
17070490 TATAAAAATA
*
17070500 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
17070536 GACAATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:17070586 original size:22 final size:22
Alignment explanation
Indices: 17070561--17070603 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17070551 TTACATATTT
17070561 AAAACTTAAAAATT-AAATTAAC
1 AAAA-TTAAAAATTAAAATTAAC
*
17070583 AAAATTAAAATTTAAAATTAA
1 AAAATTAAAAATTAAAATTAA
17070604 TAACACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATTAAAAATTAAAATTAAC
Found at i:17070611 original size:27 final size:28
Alignment explanation
Indices: 17070559--17070613 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
17070549 TATTACATAT
*
17070559 TTAAAACTTAAAAATTAAATTAACAAAA
1 TTAAAACTTAAAAATTAAATAAACAAAA
*
17070587 TTAAAA-TTTAAAATT-AATAACACAAAA
1 TTAAAACTTAAAAATTAAATAA-ACAAAA
17070614 AAATTAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.17
27 14 0.58
28 6 0.25
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (28 bp):
TTAAAACTTAAAAATTAAATAAACAAAA
Found at i:17072479 original size:19 final size:19
Alignment explanation
Indices: 17072455--17072495 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
17072445 GATTTTAGGG
*
17072455 AATTAAATTTTATTAAAA-A
1 AATTAAATTGT-TTAAAAGA
17072474 AATTAAATTGTTTAAAAGA
1 AATTAAATTGTTTAAAAGA
17072493 AAT
1 AAT
17072496 CATAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
AATTAAATTGTTTAAAAGA
Found at i:17072952 original size:14 final size:14
Alignment explanation
Indices: 17072930--17073085 Score: 111
Period size: 13 Copynumber: 11.6 Consensus size: 14
17072920 GTAAAACCTA
17072930 AAATT-AAACCTCT
1 AAATTGAAACCTCT
*
17072943 AAATTGAAACAT-T
1 AAATTGAAACCTCT
17072956 AAATTTGAAACC-CT
1 AAA-TTGAAACCTCT
*
17072970 AAATTGCAACC-CT
1 AAATTGAAACCTCT
17072983 AAAATT-AAACCTCT
1 -AAATTGAAACCTCT
*
17072997 AAATTGAAACAT-T
1 AAATTGAAACCTCT
17073010 AAATTTGAAACC-CT
1 AAA-TTGAAACCTCT
*
17073024 AAATTGCAACC-CT
1 AAATTGAAACCTCT
*
17073037 AAAATT-AAAACTCT
1 -AAATTGAAACCTCT
* *
17073051 AAAATTAAAACCT-A
1 -AAATTGAAACCTCT
*
17073065 AAATT-AAAACTCT
1 AAATTGAAACCTCT
17073078 AAA-TGAAA
1 AAATTGAAA
17073086 TCCTAAAATC
Statistics
Matches: 117, Mismatches: 13, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
12 6 0.05
13 54 0.46
14 52 0.44
15 5 0.04
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (14 bp):
AAATTGAAACCTCT
Found at i:17072985 original size:54 final size:54
Alignment explanation
Indices: 17072926--17073053 Score: 247
Period size: 54 Copynumber: 2.4 Consensus size: 54
17072916 AATTGTAAAA
17072926 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
1 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
17072980 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
1 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
*
17073034 CCTAAAATTAAAACTCTAAA
1 CCTAAAATTAAACCTCTAAA
17073054 ATTAAAACCT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (54 bp):
CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
Found at i:17073039 original size:27 final size:26
Alignment explanation
Indices: 17072915--17073105 Score: 161
Period size: 27 Copynumber: 7.1 Consensus size: 26
17072905 GAAGCTCGTA
*
17072915 AAATTGTAAAACCTAAAATTAAACCTCT
1 AAATTG-AAACCCTAAAATTAAACC-CT
** *
17072943 AAATTGAAACATTAAATTTGAAACCCT
1 AAATTGAAACCCTAAAATT-AAACCCT
*
17072970 AAATTGCAACCCTAAAATTAAACCTCT
1 AAATTGAAACCCTAAAATTAAACC-CT
** *
17072997 AAATTGAAACATTAAATTTGAAACCCT
1 AAATTGAAACCCTAAAATT-AAACCCT
* *
17073024 AAATTGCAACCCTAAAATTAAAACTCT
1 AAATTGAAACCCTAAAATT-AAACCCT
* *
17073051 AAAATT-AAAACCTAAAATTAAAACTCT
1 -AAATTGAAACCCTAAAATT-AAACCCT
* *
17073078 AAA-TGAAATCCTAAAATCAAAACCCT
1 AAATTGAAACCCTAAAAT-TAAACCCT
17073104 AA
1 AA
17073106 GTGAAATTTG
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
25 1 0.01
26 27 0.20
27 85 0.63
28 21 0.16
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.26
Consensus pattern (26 bp):
AAATTGAAACCCTAAAATTAAACCCT
Found at i:17073080 original size:54 final size:54
Alignment explanation
Indices: 17072926--17073105 Score: 238
Period size: 54 Copynumber: 3.4 Consensus size: 54
17072916 AATTGTAAAA
*
17072926 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
1 CCTAAAATTAAAACTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
*
17072980 CCTAAAATTAAACCTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
1 CCTAAAATTAAAACTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
* * * * * * *
17073034 CCTAAAATTAAAACTCTAAAATTAAAAC-CTAAAATTAAAACTCTAAA-TGAAAT
1 CCTAAAATTAAAACTCT-AAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
* *
17073087 CCTAAAATCAAAACCCTAA
1 CCTAAAATTAAAACTCTAA
17073106 GTGAAATTTG
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
52 2 0.02
53 19 0.17
54 85 0.74
55 9 0.08
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (54 bp):
CCTAAAATTAAAACTCTAAATTGAAACATTAAATTTGAAACCCTAAATTGCAAC
Found at i:17073094 original size:13 final size:13
Alignment explanation
Indices: 17073015--17073101 Score: 68
Period size: 13 Copynumber: 6.6 Consensus size: 13
17073005 ACATTAAATT
* *
17073015 TGAAACCCTAAAT
1 TGAAAACCTAAAA
* *
17073028 TGCAACCCTAAAA
1 TGAAAACCTAAAA
*
17073041 TTAAAACTCTAAAA
1 TGAAAAC-CTAAAA
*
17073055 TTAAAACCTAAAA
1 TGAAAACCTAAAA
*
17073068 TTAAAACTCT-AAA
1 TGAAAAC-CTAAAA
*
17073081 TGAAATCCTAAAA
1 TGAAAACCTAAAA
*
17073094 TCAAAACC
1 TGAAAACC
17073102 CTAAGTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
12 2 0.03
13 45 0.73
14 15 0.24
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.23
Consensus pattern (13 bp):
TGAAAACCTAAAA
Found at i:17073317 original size:21 final size:19
Alignment explanation
Indices: 17073283--17073326 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
17073273 AAGAATTTTC
*
17073283 ATAAATTTCGATAACTTAAAA
1 ATAAATTTCAATAA--TAAAA
*
17073304 ATAAATTTTAATAATAAAA
1 ATAAATTTCAATAATAAAA
17073323 ATAA
1 ATAA
17073327 TAAAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
21 12 0.57
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (19 bp):
ATAAATTTCAATAATAAAA
Found at i:17073333 original size:8 final size:8
Alignment explanation
Indices: 17073313--17073342 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
17073303 AATAAATTTT
17073313 AATAATAAA
1 AATAAT-AA
17073322 AATAATAA
1 AATAATAA
17073330 AATAATAA
1 AATAATAA
17073338 AATAA
1 AATAA
17073343 AATTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:17074557 original size:17 final size:17
Alignment explanation
Indices: 17074535--17074567 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
17074525 TTCAATAATA
17074535 CACTTGTTTTACTTGCC
1 CACTTGTTTTACTTGCC
17074552 CACTTGTTTTACTTGC
1 CACTTGTTTTACTTGC
17074568 AATCAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.27, G:0.12, T:0.48
Consensus pattern (17 bp):
CACTTGTTTTACTTGCC
Found at i:17077515 original size:13 final size:13
Alignment explanation
Indices: 17077497--17077546 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
17077487 AAGGTTAATA
*
17077497 GTTTCAATTTAGG
1 GTTTCAATTTAAG
* *
17077510 GTTTCAGTTTTAAA
1 GTTTCA-ATTTAAG
17077524 GTTTCAATTTAAG
1 GTTTCAATTTAAG
17077537 GTTTCAATTT
1 GTTTCAATTT
17077547 TATTTAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 21 0.68
14 10 0.32
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (13 bp):
GTTTCAATTTAAG
Found at i:17077530 original size:27 final size:28
Alignment explanation
Indices: 17077491--17077548 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
17077481 CAATTCAAGG
* *
17077491 TTAATAGTTTCAATTTAGGGTTTCAGTT
1 TTAATAGTTTCAATTTAAGGTTTCAATT
17077519 TTAA-AGTTTCAATTTAAGGTTTCAATT
1 TTAATAGTTTCAATTTAAGGTTTCAATT
17077546 TTA
1 TTA
17077549 TTTAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (28 bp):
TTAATAGTTTCAATTTAAGGTTTCAATT
Found at i:17079377 original size:19 final size:19
Alignment explanation
Indices: 17079353--17079393 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
17079343 AAAAGTAAAT
17079353 TTCATTATAAGCAAATAGG
1 TTCATTATAAGCAAATAGG
17079372 TTCATTATAAGCAAATAGG
1 TTCATTATAAGCAAATAGG
17079391 TTC
1 TTC
17079394 TTAACCACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (19 bp):
TTCATTATAAGCAAATAGG
Found at i:17079863 original size:10 final size:10
Alignment explanation
Indices: 17079831--17079856 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
17079821 TTAGTAATTT
17079831 TTATTATTAA
1 TTATTATTAA
17079841 TTATTATTAA
1 TTATTATTAA
17079851 TTATTA
1 TTATTA
17079857 ATTATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATTATTAA
Found at i:17080463 original size:32 final size:32
Alignment explanation
Indices: 17080422--17080610 Score: 161
Period size: 32 Copynumber: 5.8 Consensus size: 32
17080412 CTATGCTTGT
*
17080422 GTGCTAGCTACA-CTAGGTTTAAATTTTCATTG
1 GTGCTAGCTA-ATCTAGGCTTAAATTTTCATTG
* *
17080454 GTGCTAGCTATTCTCTAGGCTTAAATTTCCATTG
1 GTGCTAGCTA--ATCTAGGCTTAAATTTTCATTG
* * *
17080488 GTGCCAGGTAATCTTGGCTTAAATTTTCATTG
1 GTGCTAGCTAATCTAGGCTTAAATTTTCATTG
*
17080520 AGTGCTAGATAATCTAGGCTTAAA-TTTCATTGG
1 -GTGCTAGCTAATCTAGGCTTAAATTTTCATT-G
* * * *
17080553 GTAGC-AGATAATTTGGGCTTAAA-TTTCCTTG
1 GT-GCTAGCTAATCTAGGCTTAAATTTTCATTG
* * *
17080584 GATGCCAGATAATCTAGGTTTAAATTT
1 G-TGCTAGCTAATCTAGGCTTAAATTT
17080611 CTATAAGTGT
Statistics
Matches: 131, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
31 4 0.03
32 76 0.58
33 25 0.19
34 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (32 bp):
GTGCTAGCTAATCTAGGCTTAAATTTTCATTG
Found at i:17080545 original size:65 final size:65
Alignment explanation
Indices: 17080440--17080611 Score: 201
Period size: 64 Copynumber: 2.6 Consensus size: 65
17080430 TACACTAGGT
** *
17080440 TTAAATTTTCATTGGTGCTAGCTATTCTCTAGGCTTAAATTTCCATT-GGT-GCCAGGTAATCTT
1 TTAAATTTTCATTGGTGCTAG--ATAATCTAGGCTTAAATTTCCATTGGGTAG-CAGATAAT-TT
17080503 -GGC
62 GGGC
17080506 TTAAATTTTCATTGAGTGCTAGATAATCTAGGCTTAAATTT-CATTGGGTAGCAGATAATTTGGG
1 TTAAATTTTCATTG-GTGCTAGATAATCTAGGCTTAAATTTCCATTGGGTAGCAGATAATTTGGG
17080570 C
65 C
* * *
17080571 TTAAA-TTTCCTTGGATGCCAGATAATCTAGGTTTAAATTTC
1 TTAAATTTTCATTGG-TGCTAGATAATCTAGGCTTAAATTTC
17080612 TATAAGTGTC
Statistics
Matches: 94, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
63 1 0.01
64 36 0.38
65 35 0.37
66 15 0.16
67 7 0.07
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (65 bp):
TTAAATTTTCATTGGTGCTAGATAATCTAGGCTTAAATTTCCATTGGGTAGCAGATAATTTGGGC
Found at i:17080646 original size:97 final size:97
Alignment explanation
Indices: 17080471--17080647 Score: 211
Period size: 97 Copynumber: 1.8 Consensus size: 97
17080461 CTATTCTCTA
* * * *
17080471 GGCTTAAATTTCCATTGGTGCCAGGTAATCTTGGCTTAAATTTTCATTGAGTGCTAGATAATCTA
1 GGCTTAAATTTCCATTGGTGCCAGATAATCTAGGCTTAAATTTTCATTAAGTGCTAGATAAACTA
*
17080536 GGCTTAAATTTCATTGGGTAGCAGATAATTTG
66 GGCTTAAACTTCATTGGGTAGCAGATAATTTG
* *
17080568 GGCTTAAATTTCC-TTGGATGCCAGATAATCTAGGTTTAAA-TTTC-TATAAGTG-TCAGCTAAA
1 GGCTTAAATTTCCATTGG-TGCCAGATAATCTAGGCTTAAATTTTCAT-TAAGTGCT-AGATAAA
17080629 CTTA-GCTTAAAACTTCATT
63 C-TAGGCTT-AAACTTCATT
17080648 ATTGCCAAGT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
95 2 0.03
96 23 0.34
97 43 0.63
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (97 bp):
GGCTTAAATTTCCATTGGTGCCAGATAATCTAGGCTTAAATTTTCATTAAGTGCTAGATAAACTA
GGCTTAAACTTCATTGGGTAGCAGATAATTTG
Found at i:17081085 original size:22 final size:22
Alignment explanation
Indices: 17081057--17081107 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
17081047 GTTAAACTAG
*
17081057 GCTTATGTGCCAGCTAATCTAA
1 GCTTATGTGCCAGCTAATATAA
* *
17081079 GCTTATGTGCTAGCTAATATGA
1 GCTTATGTGCCAGCTAATATAA
17081101 GCTTATG
1 GCTTATG
17081108 GCTTTTCGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (22 bp):
GCTTATGTGCCAGCTAATATAA
Found at i:17081320 original size:32 final size:32
Alignment explanation
Indices: 17081198--17081321 Score: 124
Period size: 32 Copynumber: 3.8 Consensus size: 32
17081188 TAAAACTTGC
* * *
17081198 ATTGGTGCCAACTAAATTGGGCTTAAAATTTC
1 ATTGGTGCCAGCTAAATTGGGCTTAAATTTTT
* * * * *
17081230 ATTGATGCTAGATAAACTAGGCTTAAATTTTT
1 ATTGGTGCCAGCTAAATTGGGCTTAAATTTTT
* * *
17081262 ATTAGGTGTCAGCT-ACTCTGGTCTTAAATTTTT
1 ATT-GGTGCCAGCTAAAT-TGGGCTTAAATTTTT
17081295 ATTGGTGCCAGCTAAATTGGGCTTAAA
1 ATTGGTGCCAGCTAAATTGGGCTTAAA
17081322 ATCTATCTCA
Statistics
Matches: 70, Mismatches: 19, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
32 46 0.66
33 24 0.34
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (32 bp):
ATTGGTGCCAGCTAAATTGGGCTTAAATTTTT
Found at i:17083537 original size:19 final size:20
Alignment explanation
Indices: 17083509--17083550 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
17083499 AGACTCAAAA
17083509 CTTTTCTTTT-TCATTTTTT
1 CTTTTCTTTTCTCATTTTTT
*
17083528 CTTTTGTTTTCTCATTTTTT
1 CTTTTCTTTTCTCATTTTTT
17083548 CTT
1 CTT
17083551 CTTTTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (20 bp):
CTTTTCTTTTCTCATTTTTT
Found at i:17085284 original size:4 final size:4
Alignment explanation
Indices: 17085267--17085310 Score: 54
Period size: 4 Copynumber: 11.0 Consensus size: 4
17085257 TAAATGGATA
* *
17085267 AATG AATG AGTG AATG AATG AAT- ATATG AATG CATG AATG AATG
1 AATG AATG AATG AATG AATG AATG A-ATG AATG AATG AATG AATG
17085311 CACAAATGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
3 1 0.03
4 32 0.94
5 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.27
Consensus pattern (4 bp):
AATG
Found at i:17086714 original size:10 final size:10
Alignment explanation
Indices: 17086701--17086736 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
17086691 CTATCCTACA
17086701 TCTTTTTTTT
1 TCTTTTTTTT
17086711 TC-TTTTTTT
1 TCTTTTTTTT
*
17086720 TCTTTTTTCT
1 TCTTTTTTTT
17086730 TCTTTTT
1 TCTTTTT
17086737 ATTTGGACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:17086718 original size:9 final size:9
Alignment explanation
Indices: 17086704--17086736 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
17086694 TCCTACATCT
17086704 TTTTTTTTC
1 TTTTTTTTC
17086713 TTTTTTTTC
1 TTTTTTTTC
17086722 TTTTTTCTTC
1 TTTTTT-TTC
17086732 TTTTT
1 TTTTT
17086737 ATTTGGACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:17089015 original size:3 final size:3
Alignment explanation
Indices: 17088990--17089087 Score: 85
Period size: 3 Copynumber: 32.7 Consensus size: 3
17088980 TCAATCTTTG
* *
17088990 TTA TTA TTT TTA TT- TT- TTA -TA TTA TTG TTA TTA TTA TTTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA
* * * * *
17089034 TTA TTA TTA TTA TTA CTA TTA CTA TTA CTA TTA CTA TTA TTTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
17089080 TTA TTA TT
1 TTA TTA TT
17089088 TCTTTCTTTC
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
2 6 0.08
3 62 0.81
4 9 0.12
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:17089849 original size:6 final size:6
Alignment explanation
Indices: 17089836--17089905 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
17089826 TACATTTTTG
* * *
17089836 TTTA-T TTTA-T TTT-TT TATATT TTTATAT TTTATAT TTCATT TTATTTGT
1 TTTATT TTTATT TTTATT TTTATT TTTAT-T TTTAT-T TTTATT TT-TAT-T
17089885 TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTT
17089906 TTAAAAAATT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
5 11 0.20
6 25 0.46
7 15 0.28
8 3 0.06
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:17089849 original size:15 final size:14
Alignment explanation
Indices: 17089829--17089907 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
17089819 TTCAATTTAC
17089829 ATTTTTGTTTATTTT
1 ATTTTT-TTTATTTT
17089844 ATTTTTTTATATTTTT
1 ATTTTTTT-TA-TTTT
* * *
17089860 ATATTTTATATTTC
1 ATTTTTTTTATTTT
* *
17089874 ATTTTATTTGTTTT
1 ATTTTTTTTATTTT
*
17089888 A-TTTTTAT-TTTT
1 ATTTTTTTTATTTT
17089900 ATTTTTTT
1 ATTTTTTT
17089908 AAAAAATTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
12 5 0.10
13 10 0.20
14 15 0.30
15 10 0.20
16 10 0.20
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (14 bp):
ATTTTTTTTATTTT
Found at i:17089889 original size:21 final size:20
Alignment explanation
Indices: 17089836--17089908 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 20
17089826 TACATTTTTG
*
17089836 TTTATTTTATTT-TTTTATATT
1 TTTATTTT-TTTATTTT-CATT
*
17089857 TTTA-TATTTTATATTTCA-T
1 TTTATTTTTTTAT-TTTCATT
*
17089876 TTTATTTGTTTTATTTTTATT
1 TTTATTT-TTTTATTTTCATT
17089897 TTTATTTTTTTA
1 TTTATTTTTTTA
17089909 AAAAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
19 8 0.19
20 14 0.33
21 21 0.49
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (20 bp):
TTTATTTTTTTATTTTCATT
Found at i:17102034 original size:65 final size:64
Alignment explanation
Indices: 17101944--17102149 Score: 225
Period size: 65 Copynumber: 3.2 Consensus size: 64
17101934 GATTCAAATC
* * **
17101944 ATTTTATTTTTCTAACTTACAGTTTGATCCCAGTCATCTATTTTGATCTCAAATTGGTCTAGATA
1 ATTTTATTTTTCTAACTCACTGTTTGATCCCAGTCA-CTATTTTGATCTCAGCTTGGTCTAGATA
* * * * * * * *
17102009 ATTTAATTTTTCTGACTCACTGTTTGATCCCAGTCACTTATTTCGATCTCGGCTCGGTTTAGTTC
1 ATTTTATTTTTCTAACTCACTGTTTGATCCCAGTCAC-TATTTTGATCTCAGCTTGGTCTAGATA
* * *
17102074 ATTTTATTTTTCTAACTC-TTGGTTTGATCCTAATCACCTATTTTGATCTCAGCTTGGTCTAGAT
1 ATTTTATTTTTCTAACTCACT-GTTTGATCCCAGTCA-CTATTTTGATCTCAGCTTGGTCTAGAT
*
17102138 T
64 A
17102139 ATTTTATTTTT
1 ATTTTATTTTT
17102150 TTTGACTTGT
Statistics
Matches: 115, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
64 2 0.02
65 112 0.97
66 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (64 bp):
ATTTTATTTTTCTAACTCACTGTTTGATCCCAGTCACTATTTTGATCTCAGCTTGGTCTAGATA
Found at i:17102214 original size:130 final size:128
Alignment explanation
Indices: 17101941--17102215 Score: 277
Period size: 130 Copynumber: 2.1 Consensus size: 128
17101931 CTCGATTCAA
* ** * *
17101941 ATCATTTTATTTTTCTAACT-TACAGTTTGATCCCAGTCATCTATTTTGATCTCAAATTGGTCTA
1 ATCAATTTATTTTTCTAACTCT-TGGTTTGATCCCAATCACCTATTTTGATCTCAAATTGGTCTA
* * **
17102005 GATAATTTAATTTTTCTGACTCACTGTTTGATCCCAGTCACTTATTTCGATCTCGGCTCGGTTTA
65 GATAATTTAATTTTTCTGACT--CTGTTTCATCCCAGTCACTTATTTCGATCTCGGCTCGATCGA
17102070 G
128 G
* * * **
17102071 TTCATTTTATTTTTCTAACTCTTGGTTTGATCCTAATCACCTATTTTGATCTCAGCTTGGTCTAG
1 ATCAATTTATTTTTCTAACTCTTGGTTTGATCCCAATCACCTATTTTGATCTCAAATTGGTCTAG
* * * * *
17102136 ATTATTTTATTTTTTTTGACT-TGTAATTCAGTCCCAGTCA-TCTGTTTCGATCTCGGCTTGATC
66 A-TAATTTAATTTTTCTGACTCTGT--TTCA-TCCCAGTCACT-TATTTCGATCTCGGCTCGATC
17102199 GAG
126 GAG
*
17102202 ATCAATTTTTTTTT
1 ATCAATTTATTTTT
17102216 ACTTGCAATT
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
128 3 0.03
130 60 0.50
131 56 0.47
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (128 bp):
ATCAATTTATTTTTCTAACTCTTGGTTTGATCCCAATCACCTATTTTGATCTCAAATTGGTCTAG
ATAATTTAATTTTTCTGACTCTGTTTCATCCCAGTCACTTATTTCGATCTCGGCTCGATCGAG
Found at i:17102578 original size:129 final size:130
Alignment explanation
Indices: 17102348--17102686 Score: 382
Period size: 131 Copynumber: 2.6 Consensus size: 130
17102338 TTTCCCAGTT
** * * * * * *
17102348 ACCTATTTTGATCTCAGCTTGATTTAGGTCACTTTATTTTTCTAACTCGCGGTTCAATCCAGGTC
1 ACCTATTTTGATCTCAGCTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCAGGTC
** * * * *
17102413 ATTTGTTTTGCTCTTGGCTTGGTCTAGATCATTTTA-TTTTTTGACTCGTGGTTC-GATCCCGAT
66 ACCTATTTTGATCTCGACTTGGTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAG-TCCCGAT
17102476 C
130 C
* * * *
17102477 ACCTATTTTAATCTCAACTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTCAGTCCTGGTC
1 ACCTATTTTGATCTCAGCTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCAGGTC
*
17102542 ACCTATTTTGATCTCGACTTGGT-TCAGATCATTTTATTTTTTTTGACTCGTGGTTCAGTCTCGA
66 ACCTATTTTGATCTCGACTTGGTCT-AGATCATTTTA-TTTTTTTGACTCGTGGTTCAGTCCCGA
17102606 TC
129 TC
* * * * *
17102608 ACCTATTTCGATCTTAGCTCATTCTAGATCATTTTATTGTTTTGACTCGTGGTTCAAACCCA-GT
1 ACCTATTTTGATCTCAGCTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTC-AATCCAGGT
17102672 CACTCT-TTTTGATCT
65 CAC-CTATTTTGATCT
17102687 TGGCTCAGTC
Statistics
Matches: 176, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
128 1 0.01
129 81 0.46
131 88 0.50
132 6 0.03
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (130 bp):
ACCTATTTTGATCTCAGCTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCAGGTC
ACCTATTTTGATCTCGACTTGGTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAGTCCCGATC
Found at i:17102596 original size:31 final size:30
Alignment explanation
Indices: 17102502--17102599 Score: 81
Period size: 35 Copynumber: 3.1 Consensus size: 30
17102492 AACTCAATCT
17102502 AGATCATTTTATTTTTTTGACTCGTGGTTC
1 AGATCATTTTATTTTTTTGACTCGTGGTTC
* * * * *
17102532 AG-TCCTGGTCACCTATTTTGATCTCGACTTGGTTC
1 AGATCAT-TTTA-TTTTTTTGA-CTCG---TGGTTC
17102567 AGATCATTTTATTTTTTTTGACTCGTGGTTC
1 AGATCATTTTA-TTTTTTTGACTCGTGGTTC
17102598 AG
1 AG
17102600 TCTCGATCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 13
0.68 0.15 0.18
Matches are distributed among these distances:
29 3 0.06
30 4 0.08
31 15 0.30
32 4 0.08
34 4 0.08
35 17 0.34
36 3 0.06
ACGTcount: A:0.16, C:0.17, G:0.18, T:0.48
Consensus pattern (30 bp):
AGATCATTTTATTTTTTTGACTCGTGGTTC
Found at i:17102686 original size:65 final size:65
Alignment explanation
Indices: 17102348--17102708 Score: 293
Period size: 65 Copynumber: 5.6 Consensus size: 65
17102338 TTTCCCAGTT
* * * * * * * * *
17102348 ACCTATTTTGATCTCAGCTTGATT-TAGGTCACTTTATTTTTCTAACTCGCGGTTCAATCCAGGT
1 ACCTATTTTGATCTTAGC-TCATTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCCGAT
17102412 C
65 C
** * * * *** *
17102413 ATTTGTTTTGCTCTTGGCTTGGTCTAGATCATTTTA-TTTTTTGACTCGTGGTTCGATCCCGATC
1 ACCTATTTTGATCTTAGCTCATTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCCGATC
* * * * * * *
17102477 ACCTATTTTAATCTCAACTCAATCTAGATCATTTTATTTTTTTGACTCGTGGTTCAGTCCTGGTC
1 ACCTATTTTGATCTTAGCTCATTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCCGATC
* ** * *
17102542 ACCTATTTTGATC-TCGACTTGGTTC-AGATCATTTTATTTTTTTTGACTCGTGGTTCAGTCTCG
1 ACCTATTTTGATCTTAG-C-TCATTCTAGATCATTTTA-TTTTTTTGACTCGTGGTTCAATCCCG
17102605 ATC
63 ATC
* * *
17102608 ACCTATTTCGATCTTAGCTCATTCTAGATCATTTTATTGTTTTGACTCGTGGTTCAAACCC-AGT
1 ACCTATTTTGATCTTAGCTCATTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCCGA-T
17102672 C
65 C
* * * *
17102673 ACTCT-TTTTGATCTTGGCTCAGTCCAAATCATTTTA
1 AC-CTATTTTGATCTTAGCTCATTCTAGATCATTTTA
17102709 ATTTCTTGTT
Statistics
Matches: 232, Mismatches: 55, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
64 50 0.22
65 125 0.54
66 55 0.24
67 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (65 bp):
ACCTATTTTGATCTTAGCTCATTCTAGATCATTTTATTTTTTTGACTCGTGGTTCAATCCCGATC
Found at i:17102965 original size:16 final size:17
Alignment explanation
Indices: 17102938--17102970 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
17102928 AGGCCTAATC
17102938 TTTTATTATTATTATTT
1 TTTTATTATTATTATTT
17102955 TTTTATT-TTATTATTT
1 TTTTATTATTATTATTT
17102971 CTTTCTTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTATTATTATTT
Found at i:17103688 original size:4 final size:4
Alignment explanation
Indices: 17103673--17103766 Score: 56
Period size: 4 Copynumber: 22.8 Consensus size: 4
17103663 TCTTTTTTCC
*
17103673 ATTT ACTT ATTT ATTT ATTTT ATTT -TTCT AGATTT -TCTT ATTT -TTT
1 ATTT ATTT ATTT ATTT A-TTT ATTT ATT-T --ATTT AT-TT ATTT ATTT
17103719 ATTT CATTT CATTT ATTT ATTT A-TT -TTT ACTTT -TTT ATTT CATTT
1 ATTT -ATTT -ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT -ATTT
17103764 ATT
1 ATT
17103767 ATCATTATCA
Statistics
Matches: 74, Mismatches: 2, Indels: 28
0.71 0.02 0.27
Matches are distributed among these distances:
3 13 0.18
4 37 0.50
5 21 0.28
6 1 0.01
7 2 0.03
ACGTcount: A:0.20, C:0.07, G:0.01, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:17103739 original size:18 final size:17
Alignment explanation
Indices: 17103712--17103763 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
17103702 AGATTTTCTT
17103712 ATTTTTTATTTCATTTC
1 ATTTTTTATTTCATTTC
*
17103729 ATTTATTTATTT-ATTTTT
1 ATTT-TTTATTTCA-TTTC
17103747 ACTTTTTTATTTCATTT
1 A-TTTTTTATTTCATTT
17103764 ATTATCATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.17
18 21 0.70
19 4 0.13
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTCATTTC
Found at i:17104710 original size:10 final size:10
Alignment explanation
Indices: 17104695--17104719 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
17104685 TCAAAAAATA
17104695 ATTTTTATAT
1 ATTTTTATAT
17104705 ATTTTTATAT
1 ATTTTTATAT
17104715 ATTTT
1 ATTTT
17104720 CCTTTTCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:17104746 original size:3 final size:3
Alignment explanation
Indices: 17104738--17104790 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
17104728 ATTTAAAGTT
* *
17104738 TTA TTA TTA TTA TTA TTA TTA TTTA CTTA TCTT TTA TTA TT- TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA T-TA TTA TTA TTA TTA TTA
17104785 TTA TTA
1 TTA TTA
17104791 GTTCATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
2 2 0.05
3 32 0.76
4 8 0.19
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:17105044 original size:17 final size:18
Alignment explanation
Indices: 17105003--17105044 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
17104993 TTCAAGTTTG
*
17105003 ATTAACAATAAAATTAAA
1 ATTAAAAATAAAATTAAA
**
17105021 AAAAAAAAT-AAATTAAA
1 ATTAAAAATAAAATTAAA
17105038 ATTAAAA
1 ATTAAAA
17105045 TCAAATTTAA
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
ATTAAAAATAAAATTAAA
Found at i:17105875 original size:15 final size:15
Alignment explanation
Indices: 17105857--17105890 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17105847 TTTCAGTTTT
17105857 TTTTTTTTATTATTA
1 TTTTTTTTATTATTA
* *
17105872 TTTTTTTTTTTTTTA
1 TTTTTTTTATTATTA
17105887 TTTT
1 TTTT
17105891 CACACCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTTTATTATTA
Found at i:17105875 original size:18 final size:18
Alignment explanation
Indices: 17105854--17105888 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17105844 TGGTTTCAGT
17105854 TTTTTTTTTTTATTATTA
1 TTTTTTTTTTTATTATTA
*
17105872 TTTTTTTTTTTTTTATT
1 TTTTTTTTTTTATTATT
17105889 TTCACACCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (18 bp):
TTTTTTTTTTTATTATTA
Found at i:17106874 original size:14 final size:14
Alignment explanation
Indices: 17106822--17106885 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
17106812 GATTTTTAGT
*
17106822 ATTTTTTATTATTA
1 ATTTTTAATTATTA
17106836 ATTATATT-ATTATT-
1 ATT-T-TTAATTATTA
* *
17106850 TTTTATTAATTTTTA
1 ATTT-TTAATTATTA
17106865 ATTTTTAATTATTA
1 ATTTTTAATTATTA
*
17106879 TTTTTTA
1 ATTTTTA
17106886 TGATCGACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
13 4 0.10
14 25 0.61
15 10 0.24
16 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTAATTATTA
Found at i:17117195 original size:10 final size:10
Alignment explanation
Indices: 17117180--17117222 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
17117170 AAATAAAACA
17117180 AAAGAGAGAG
1 AAAGAGAGAG
*
17117190 AAAGAGAGAA
1 AAAGAGAGAG
17117200 AAAGAGAGATAG
1 AAAGAGAG--AG
*
17117212 ATAGAGAGAG
1 AAAGAGAGAG
17117222 A
1 A
17117223 CTTTCCTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 20 0.71
12 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.35, T:0.05
Consensus pattern (10 bp):
AAAGAGAGAG
Found at i:17127394 original size:491 final size:492
Alignment explanation
Indices: 17126429--17127402 Score: 1632
Period size: 491 Copynumber: 2.0 Consensus size: 492
17126419 GATGCTACAG
* * *
17126429 GAAATGCTCAGGAGCTTACCATATGAGTGGTTTACGTTATAGGATAGATTGGAATTATGTCGTAG
1 GAAATGCTAAGGAACTGACCATATGAGTGGTTTACGTTATAGGATAGATTGGAATTATGTCGTAG
* ***** *
17126494 AATATACTGGAAAATTTTGTTGTATGTGCGGCTGAGCATTGATTGAACTTTATATGCATTTTTTT
66 AATATACTGAAAAATCGCACTGTATGTGCGGCTGAGCATTGATTAAACTTTATATGCATTTTTTT
*
17126559 TCTTTTGAATTTTTGTTCGAATGTATATGAAGTGTAGAGCATGTAAAATGATAATGTTATTTCAT
131 TCTTTTGAATTTTTGTTCGAATGTATATGAAGTGTAGAGCATGCAAAATGATAATGTTATTTCAT
* *
17126624 AGGAATTACAAAAGAGCCACTTGTGTCTTATTAAACTCTTCGGGGAACATCCGTGGTAGTTGTGT
196 AGGAATTACAAAAGAGCCACTTGTGTCTTATTAAACTCATCGGGGAACATCCATGGTAGTTGTGT
* *
17126689 TGCTTTCCAAGCTTGTCTTCTATTCTAAAATTTACACTTTGCATTCACTTGGTACGGATCCTGTA
261 TGCTTTCCAAGCTAGTCTTCTATTCTAAAATTTACACTTTGCATTCACTTGGTACGGAGCCTGTA
17126754 AAGGTGATAGATTTAAGCTTGGTGGTCAAGTTTCATAACAAACTTCTTATCTTTAAGCTTCACAA
326 AAGGTGATAGATTTAAGCTTGGTGGTCAAGTTTCATAACAAACTTCTTATCTTTAAGCTTCACAA
* *
17126819 TTCGATTAAAATTTTTCATCGTTCTCACCAATAGCTAATAAACTAGACAGCGAGAAATATGCTGA
391 TTCGATTAAAATTTTTCATCGTTCTCACCAATAACTAATAAACTAGACAGCGAGAAATACGCTGA
17126884 GTAGTAGGAAAACACCAAAACTGCTTTGTTGCTGCAC
456 GTAGTAGGAAAACACCAAAACTGCTTTGTTGCTGCAC
* *
17126921 GAAATGCTAAGGAACTGACCATATGAGTGGTTTATGTTGTAGGATAGATTGGAATTATGTCGTAG
1 GAAATGCTAAGGAACTGACCATATGAGTGGTTTACGTTATAGGATAGATTGGAATTATGTCGTAG
* *
17126986 AATGTACTGAAAAATCGCACTGTATGTGCGGCTGAGCATTGATTAAACTTTATATG-GTTTTTTT
66 AATATACTGAAAAATCGCACTGTATGTGCGGCTGAGCATTGATTAAACTTTATATGCATTTTTTT
* * *
17127050 TTTTTTGAATTTTTGTTCGAATGTATATGAAGTGTCGAGCATGCATAATGATAATGTTATTTCAT
131 TCTTTTGAATTTTTGTTCGAATGTATATGAAGTGTAGAGCATGCAAAATGATAATGTTATTTCAT
17127115 AGGAATTACAAAAGAGCCACTTGTGTCTTATTAAACTCATCGGGGAACATCCATGGTAGTTGTGT
196 AGGAATTACAAAAGAGCCACTTGTGTCTTATTAAACTCATCGGGGAACATCCATGGTAGTTGTGT
* *
17127180 TGCTTTCCAAGGTAGTCTTCTATTTTAAAATTTACACTTTGCATTCACTTGGTACGGAGCCTGTA
261 TGCTTTCCAAGCTAGTCTTCTATTCTAAAATTTACACTTTGCATTCACTTGGTACGGAGCCTGTA
17127245 AAGGTGATAGATTTAAGCTTGGTGGTCAAGTTTCATAACAAACTTCTTATCTTTAAGCTTCACAA
326 AAGGTGATAGATTTAAGCTTGGTGGTCAAGTTTCATAACAAACTTCTTATCTTTAAGCTTCACAA
* *
17127310 TTGGATTAAAATTTTTTCATCGTTCTTACCAATAACTAATAAACTAGA-AG-GTAAGAAATACGC
391 TTCGATTAAAA-TTTTTCATCGTTCTCACCAATAACTAATAAACTAGACAGCG--AGAAATACGC
*
17127373 TGAGTAGTAGG-AAAGACCAAAACTGCTTTG
453 TGAGTAGTAGGAAAACACCAAAACTGCTTTG
17127403 ATGATGTTAT
Statistics
Matches: 450, Mismatches: 29, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
490 1 0.00
491 287 0.64
492 162 0.36
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (492 bp):
GAAATGCTAAGGAACTGACCATATGAGTGGTTTACGTTATAGGATAGATTGGAATTATGTCGTAG
AATATACTGAAAAATCGCACTGTATGTGCGGCTGAGCATTGATTAAACTTTATATGCATTTTTTT
TCTTTTGAATTTTTGTTCGAATGTATATGAAGTGTAGAGCATGCAAAATGATAATGTTATTTCAT
AGGAATTACAAAAGAGCCACTTGTGTCTTATTAAACTCATCGGGGAACATCCATGGTAGTTGTGT
TGCTTTCCAAGCTAGTCTTCTATTCTAAAATTTACACTTTGCATTCACTTGGTACGGAGCCTGTA
AAGGTGATAGATTTAAGCTTGGTGGTCAAGTTTCATAACAAACTTCTTATCTTTAAGCTTCACAA
TTCGATTAAAATTTTTCATCGTTCTCACCAATAACTAATAAACTAGACAGCGAGAAATACGCTGA
GTAGTAGGAAAACACCAAAACTGCTTTGTTGCTGCAC
Found at i:17131502 original size:57 final size:57
Alignment explanation
Indices: 17131414--17131758 Score: 184
Period size: 59 Copynumber: 5.7 Consensus size: 57
17131404 TTTTTAATGA
* * * * *
17131414 TCTCTTTAAAATGAAAATTTGAGACAAATATTTTTGAAGGAAAGTGGAATGTATCAATT
1 TCTCTTAAAAATAAAAATTT-AAAAAAATATTTTTGAAGGAAAGTAGAA-GTATCAATT
* * * * *
17131473 TC-CTTTGAACATAAAAA-TTAAAAAAATATTTTTGACGAAAAGTTAGAAGTACCAATT
1 TCTC-TTAAAAATAAAAATTTAAAAAAATATTTTTGAAGGAAAG-TAGAAGTATCAATT
* * *
17131530 TTTCTTAAAAATAAAAATTTTCAAAAAATATTTTT-AAGGAAAAGTTGAAAGTATCAATT
1 TCTCTTAAAAATAAAAA-TTTAAAAAAATATTTTTGAAGG-AAAGTAG-AAGTATCAATT
* * * * * *
17131589 TTTCTTGAAAATAAATAAAAAAGATTTCAAGAAGAGATTTTT-AAGGAAAGTTGAAAGCATCAAT
1 TCTCTT---AA-AAAT--AAAA-ATTT-AAAAAAATATTTTTGAAGGAAAGTAG-AAGTATCAAT
17131653 T
57 T
* * * *
17131654 TTTCTTAAAAATAAAAATTTCAAAAACAAAACATTTTT-AAGGAAAAGTTGGAAGTACCAATT
1 TCTCTTAAAAATAAAAATTT---AAA-AAAATATTTTTGAAGG-AAAG-TAGAAGTATCAATT
*
17131716 T-TCCTTAAAAAT-AAAATTATCAAGAAAAACATTTTT-AAGGAAA
1 TCT-CTTAAAAATAAAAATT-T-AA-AAAAATATTTTTGAAGGAAA
17131759 AGTTGAAAGA
Statistics
Matches: 233, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
57 39 0.17
58 16 0.07
59 54 0.23
60 19 0.08
61 25 0.11
62 28 0.12
63 6 0.03
65 31 0.13
66 15 0.06
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.33
Consensus pattern (57 bp):
TCTCTTAAAAATAAAAATTTAAAAAAATATTTTTGAAGGAAAGTAGAAGTATCAATT
Found at i:17132632 original size:22 final size:22
Alignment explanation
Indices: 17132604--17132649 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
17132594 AGCGAAATAC
17132604 TCCCACTCAAATTGAACCTTTT
1 TCCCACTCAAATTGAACCTTTT
*
17132626 TCCCACTTAAATTGAACCTTTT
1 TCCCACTCAAATTGAACCTTTT
17132648 TC
1 TC
17132650 GTTTGTAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (22 bp):
TCCCACTCAAATTGAACCTTTT
Found at i:17135270 original size:9 final size:8
Alignment explanation
Indices: 17135250--17135311 Score: 61
Period size: 9 Copynumber: 7.0 Consensus size: 8
17135240 AAAAGGTTTC
*
17135250 AAAGATAA
1 AAAGAAAA
17135258 AAAGAAAA
1 AAAGAAAA
17135266 GAAAGAAAGA
1 -AAAGAAA-A
17135276 AAAGCAAAA
1 AAAG-AAAA
17135285 CAAAGAAAA
1 -AAAGAAAA
17135294 AAGAGAAAA
1 AA-AGAAAA
17135303 AAACGAAAA
1 AAA-GAAAA
17135312 TGAATGCCAC
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
8 10 0.21
9 29 0.62
10 8 0.17
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (8 bp):
AAAGAAAA
Found at i:17135284 original size:19 final size:18
Alignment explanation
Indices: 17135257--17135302 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
17135247 TTCAAAGATA
*
17135257 AAAAGAAAAGAAAGAAAG
1 AAAAGAAAACAAAGAAAG
17135275 AAAAGCAAAACAAAGAAA-
1 AAAAG-AAAACAAAGAAAG
17135293 AAAGAGAAAA
1 AAA-AGAAAA
17135303 AAACGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.78, C:0.04, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAGAAAACAAAGAAAG
Found at i:17135716 original size:10 final size:10
Alignment explanation
Indices: 17135698--17135796 Score: 116
Period size: 10 Copynumber: 10.2 Consensus size: 10
17135688 AAAATGGATG
17135698 GAAAAAAAAA
1 GAAAAAAAAA
* *
17135708 GAGAAAAAAT
1 GAAAAAAAAA
17135718 G-AAAAAAAA
1 GAAAAAAAAA
*
17135727 -AAGAAAAAA
1 GAAAAAAAAA
*
17135736 G-GAAAAAAA
1 GAAAAAAAAA
17135745 GAAAAAAAAA
1 GAAAAAAAAA
17135755 G-AAAAAAAA
1 GAAAAAAAAA
17135764 GAAAAAAAAA
1 GAAAAAAAAA
17135774 GAAAAAAAAA
1 GAAAAAAAAA
*
17135784 GAATGAAAAAA
1 GAA-AAAAAAA
17135795 GA
1 GA
17135797 TGAAAGGAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
9 29 0.39
10 38 0.51
11 8 0.11
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:17135721 original size:20 final size:19
Alignment explanation
Indices: 17135698--17135796 Score: 107
Period size: 19 Copynumber: 5.1 Consensus size: 19
17135688 AAAATGGATG
17135698 GAAAAAAAAAGAGAAAAAA
1 GAAAAAAAAAGAGAAAAAA
17135717 TGAAAAAAAAA-AGAAAAAA
1 -GAAAAAAAAAGAGAAAAAA
17135736 GGAAAAAAAGAA-A-AAAAAA
1 -GAAAAAAA-AAGAGAAAAAA
*
17135755 G-AAAAAAAAGAAAAAAAAA
1 GAAAAAAAAAG-AGAAAAAA
17135774 GAAAAAAAAAGAATGAAAAAA
1 GAAAAAAAAAG-A-GAAAAAA
17135795 GA
1 GA
17135797 TGAAAGGAGA
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
16 2 0.03
17 6 0.08
18 2 0.03
19 29 0.41
20 24 0.34
21 8 0.11
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (19 bp):
GAAAAAAAAAGAGAAAAAA
Found at i:17135722 original size:19 final size:19
Alignment explanation
Indices: 17135700--17135786 Score: 115
Period size: 19 Copynumber: 4.7 Consensus size: 19
17135690 AATGGATGGA
*
17135700 AAAAAAAAGAGAAAAAATG
1 AAAAAAAAGAGAAAAAAAG
*
17135719 AAAAAAAAAAG-AAAAAAG
1 AAAAAAAAGAGAAAAAAAG
* *
17135737 GAAAAAAAGAAAAAAAAAG
1 AAAAAAAAGAGAAAAAAAG
*
17135756 AAAAAAAAGAAAAAAAAAG
1 AAAAAAAAGAGAAAAAAAG
17135775 AAAAAAAA-AGAA
1 AAAAAAAAGAGAA
17135787 TGAAAAAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
18 17 0.28
19 43 0.72
ACGTcount: A:0.86, C:0.00, G:0.13, T:0.01
Consensus pattern (19 bp):
AAAAAAAAGAGAAAAAAAG
Found at i:17135794 original size:1 final size:1
Alignment explanation
Indices: 17135699--17135783 Score: 71
Period size: 1 Copynumber: 85.0 Consensus size: 1
17135689 AAATGGATGG
* * ** * ** * *
17135699 AAAAAAAAAGAGAAAAAATGAAAAAAAAAAGAAAAAAGGAAAAAAAGAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
17135764 GAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAA
17135784 GAATGAAAAA
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.87, C:0.00, G:0.12, T:0.01
Consensus pattern (1 bp):
A
Found at i:17136959 original size:25 final size:25
Alignment explanation
Indices: 17136931--17137006 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
17136921 TCCTTTTATA
17136931 AGAATCTTTAAAAAGTCCTCAAATG
1 AGAATCTTTAAAAAGTCCTCAAATG
* * *
17136956 AGAATCTTT---GAGT-TTTAAATG
1 AGAATCTTTAAAAAGTCCTCAAATG
17136977 AGAATCTTTAAGAAA-TCCTCAAATG
1 AGAATCTTTAA-AAAGTCCTCAAATG
*
17137002 TGAAT
1 AGAAT
17137007 ATTTGAGTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
21 15 0.38
22 3 0.08
24 1 0.03
25 20 0.51
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (25 bp):
AGAATCTTTAAAAAGTCCTCAAATG
Found at i:17136977 original size:21 final size:21
Alignment explanation
Indices: 17136949--17137120 Score: 182
Period size: 21 Copynumber: 7.9 Consensus size: 21
17136939 TAAAAAGTCC
17136949 TCAAATGAGAATCTTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
* * *
17136970 TTAAATGAGAATCTTTAAGAAATCC
1 TCAAATGAGAATCTTT--G-AGT-T
* *
17136995 TCAAATGTGAATATTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
*
17137016 TCAAATGAGAATATTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
17137037 TCAAATGAGAATCTTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
* * * *
17137058 TTAGAATAAGAACCTTTGAATCT
1 TCA-AATGAGAATCTTTGAGT-T
*
17137081 TCAAATGAGAATCTTTAAGTT
1 TCAAATGAGAATCTTTGAGTT
*
17137102 TCAAATGAGAATATTTGAG
1 TCAAATGAGAATCTTTGAG
17137121 ATGCAAAACC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
21 75 0.60
22 29 0.23
23 5 0.04
24 2 0.02
25 13 0.10
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.37
Consensus pattern (21 bp):
TCAAATGAGAATCTTTGAGTT
Found at i:17136981 original size:46 final size:43
Alignment explanation
Indices: 17136931--17137113 Score: 179
Period size: 46 Copynumber: 4.1 Consensus size: 43
17136921 TCCTTTTATA
*
17136931 AGAATCTTTAAAAAGTCCTCAAATGAGAATCTTTGAGTTTTAAATG
1 AGAATCTTT--AAA-TCCTCAAATGAGAATCTTTGAGTTTCAAATG
* *
17136977 AGAATCTTTAAGAAATCCTCAAATGTGAATATTTGAGTTTCAAATG
1 AGAATCTTT---AAATCCTCAAATGAGAATCTTTGAGTTTCAAATG
* * * * * *
17137023 AGAATATTTGAGT-TTCAAATGAGAATCTTTGAGTTTTAGAATA
1 AGAATCTTTAAATCCTCAAATGAGAATCTTTGAGTTTCA-AATG
* * * *
17137066 AGAACCTTTGAATCTTCAAATGAGAATCTTTAAGTTTCAAATG
1 AGAATCTTTAAATCCTCAAATGAGAATCTTTGAGTTTCAAATG
17137109 AGAAT
1 AGAAT
17137114 ATTTGAGATG
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
42 21 0.18
43 22 0.19
44 23 0.20
46 45 0.39
47 4 0.03
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (43 bp):
AGAATCTTTAAATCCTCAAATGAGAATCTTTGAGTTTCAAATG
Found at i:17137114 original size:86 final size:87
Alignment explanation
Indices: 17136949--17137120 Score: 258
Period size: 86 Copynumber: 2.0 Consensus size: 87
17136939 TAAAAAGTCC
* * * *
17136949 TCAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAATCCTCAAATGTGAATATTTGAG
1 TCAAATGAGAATCTTTGAGTTTTAAATAAGAACCTTT-AGAAATCCTCAAATGAGAATATTTAAG
17137014 TTTCAAATGAGAATATTTGAGTT
65 TTTCAAATGAGAATATTTGAGTT
* *
17137037 TCAAATGAGAATCTTTGAGTTTTAGAATAAGAACCTTT-G-AATCTTCAAATGAGAATCTTTAAG
1 TCAAATGAGAATCTTTGAGTTTTA-AATAAGAACCTTTAGAAATCCTCAAATGAGAATATTTAAG
17137100 TTTCAAATGAGAATATTTGAG
65 TTTCAAATGAGAATATTTGAG
17137121 ATGCAAAACC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
86 41 0.53
87 1 0.01
88 24 0.31
89 11 0.14
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.37
Consensus pattern (87 bp):
TCAAATGAGAATCTTTGAGTTTTAAATAAGAACCTTTAGAAATCCTCAAATGAGAATATTTAAGT
TTCAAATGAGAATATTTGAGTT
Found at i:17137652 original size:85 final size:85
Alignment explanation
Indices: 17137558--17137736 Score: 211
Period size: 85 Copynumber: 2.1 Consensus size: 85
17137548 TCAGGGAGCA
* * * *
17137558 TTTTTCAAAGTTGTGGTGCCTCTGGTTAGAGAAGCATTT-TATTTTTC-AAAGTTGTTGAGCCTC
1 TTTTTCAAAGTTGTGGAGCCTCTGCTTAGAGAAGCCTTTAT-TTTTTCAAAAGTTG-TCAGCCTC
* **
17137621 TAATTGGGGGAGCCCTTTA-TTT
64 TAATTAGAAGAG-CCTTTATTTT
* * *
17137643 TTTTTCAAAGTTGTTGAGCCTTTGCTTAGAGGAGCCTTTATTTTTTCAAAAGTTGTCAGCCTCTA
1 TTTTTCAAAGTTGTGGAGCCTCTGCTTAGAGAAGCCTTTATTTTTTCAAAAGTTGTCAGCCTCTA
*
17137708 CTTAGAAGAGCCTTTATTTT
66 ATTAGAAGAGCCTTTATTTT
17137728 TTTTTCAAA
1 TTTTTCAAA
17137737 AGTTCTTAGT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
84 6 0.08
85 66 0.82
86 8 0.10
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.44
Consensus pattern (85 bp):
TTTTTCAAAGTTGTGGAGCCTCTGCTTAGAGAAGCCTTTATTTTTTCAAAAGTTGTCAGCCTCTA
ATTAGAAGAGCCTTTATTTT
Found at i:17137657 original size:44 final size:43
Alignment explanation
Indices: 17137558--17137736 Score: 170
Period size: 41 Copynumber: 4.2 Consensus size: 43
17137548 TCAGGGAGCA
* * ** * * *
17137558 TTTTTCAAAGTTGTGGTGCCTCTGGTTAGAGAAG-CATT-TTA
1 TTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCCTTTATTT
* * *
17137599 TTTTTCAAAGTTGTTGAGCCTCTAATTGGGGGAGCCCTTTATTT
1 TTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAG-CCTTTATTT
* *
17137643 TTTTTCAAAGTTGTTGAGCCTTTGCTTAGAGGAGCCTTTA--T
1 TTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCCTTTATTT
* *
17137684 TTTTTCAAAAGTTG-TCAGCCTCTACTTAGAAGAGCCTTTATTTT
1 TTTTTC-AAAGTTGTTGAGCCTCTACTTAGAGGAGCCTTTA-TTT
17137728 TTTTTCAAA
1 TTTTTCAAA
17137737 AGTTCTTAGT
Statistics
Matches: 113, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
41 56 0.50
42 7 0.06
43 12 0.11
44 38 0.34
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.44
Consensus pattern (43 bp):
TTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCCTTTATTT
Found at i:17139898 original size:57 final size:57
Alignment explanation
Indices: 17139836--17140095 Score: 190
Period size: 62 Copynumber: 4.4 Consensus size: 57
17139826 AAAATTTAAG
* *
17139836 AAAAATATTTTTGAAGG-AAAGTGGAATGTATCAA-TTTCCTTTGAACATAAAAATTGA
1 AAAAATATTTTTGAAGGAAAAGTGGAA-GTATCAAGTTTCC-TTGAAAATAAAAATTCA
* * * *
17139893 AAAAATATTTTTG-AGGAAAAATTGGAAGTACCAAGTTTTCTTAAAAATAAAAATTTTCA
1 AAAAATATTTTTGAAGG-AAAAGTGGAAGTATCAAGTTTCCTTGAAAATAAAAA--TTCA
* *
17139952 AAAAATATTTTT-AAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAGA
1 AAAAATATTTTTGAAGGAAAAG-TGGAAGTATCAAGTTTCCTTGAAAATAAAAA-TTC---A
* * * * * * * *
17140013 ACAAAACATTTTT-TAGGAAAAGTTGGAAATACCAATTTTCTTTAAAAATAAAATTATCAA
1 A-AAAATATTTTTGAAGGAAAAG-TGGAAGTATCAAGTTTCCTTGAAAATAAAAAT-TC-A
*
17140073 GAAAAACATTTTT-AAGGAAAAGT
1 -AAAAATATTTTTGAAGGAAAAGT
17140096 TAAAACTATC
Statistics
Matches: 168, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
56 3 0.02
57 30 0.18
58 20 0.12
59 45 0.27
60 20 0.12
61 4 0.02
62 46 0.27
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (57 bp):
AAAAATATTTTTGAAGGAAAAGTGGAAGTATCAAGTTTCCTTGAAAATAAAAATTCA
Found at i:17140049 original size:62 final size:61
Alignment explanation
Indices: 17139891--17140096 Score: 237
Period size: 62 Copynumber: 3.4 Consensus size: 61
17139881 CATAAAAATT
* * * *
17139891 GAAAAAATATTTTTGAGGAAAAATTGGAAGTACCAAGTTTT-CTTAAAAATAAAAATTTTC--
1 GAAAAAACATTTTTAAGGAAAAGTTGGAAATACCAA-TTTTCCTTAAAAATAAAAA-TTTCAA
* * *
17139951 -AAAAAATATTTTTAAGGAAAAGTT-GAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAA
1 GAAAAAACATTTTTAAGGAAAAGTTGGAAA-TACCAATTTTCCTTAAAAATAAAAATTTCAA
* *
17140011 GAACAAAACATTTTTTAGGAAAAGTTGGAAATACCAATTTTCTTTAAAAAT-AAAATTATCAA
1 GAA-AAAACATTTTTAAGGAAAAGTTGGAAATACCAATTTTCCTTAAAAATAAAAATT-TCAA
17140073 G-AAAAACATTTTTAAGGAAAAGTT
1 GAAAAAACATTTTTAAGGAAAAGTT
17140097 AAAACTATCA
Statistics
Matches: 127, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
58 11 0.09
59 40 0.31
60 21 0.17
61 9 0.07
62 42 0.33
63 4 0.03
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.33
Consensus pattern (61 bp):
GAAAAAACATTTTTAAGGAAAAGTTGGAAATACCAATTTTCCTTAAAAATAAAAATTTCAA
Found at i:17140109 original size:60 final size:58
Alignment explanation
Indices: 17139815--17140124 Score: 242
Period size: 59 Copynumber: 5.3 Consensus size: 58
17139805 TTCAATGATC
* * * * *
17139815 TCTTTAAAATGAAAATTT-AAGAAAAATATTTTTGAAGG-AAAGTGGAATGTATCAATTT
1 TCTTAAAAATAAAAATTTCAAGAAAAACATTTTT-AAGGAAAAGTTGAA-ATATCAATTT
* * * * * * * * *
17139873 CCTTTGAACATAAAAA-TT-GA-AAAAATATTTTTGAGGAAAAATTGGAAGTACCAAGTTT
1 TC-TTAAAAATAAAAATTTCAAGAAAAACATTTTTAAGGAAAAGTT-GAAATATCAA-TTT
*
17139931 TCTTAAAAATAAAAATTTTC-A-AAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTT
1 TCTTAAAAATAAAAA-TTTCAAGAAAAACATTTTTAAGGAAAAGTTGAAA-TATCAATTT
* * *
17139989 TCCTTGAAAATAAAAATTTCAAGAACAAAACATTTTTTAGGAAAAGTTGGAAATACCAATTT
1 T-CTTAAAAATAAAAATTTCAAG-A-AAAACATTTTTAAGGAAAAGTT-GAAATATCAATTT
*
17140051 TCTTTAAAAAT-AAAATTATCAAGAAAAACATTTTTAAGGAAAAGTTAAAACTATCAATTT
1 TC-TTAAAAATAAAAATT-TCAAGAAAAACATTTTTAAGGAAAAGTTGAAA-TATCAATTT
**
17140111 T-TCGAAAATAAAAA
1 TCTTAAAAATAAAAA
17140125 CCTTAAAATG
Statistics
Matches: 208, Mismatches: 26, Indels: 35
0.77 0.10 0.13
Matches are distributed among these distances:
56 3 0.01
57 33 0.16
58 28 0.13
59 60 0.29
60 30 0.14
61 9 0.04
62 41 0.20
63 4 0.02
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (58 bp):
TCTTAAAAATAAAAATTTCAAGAAAAACATTTTTAAGGAAAAGTTGAAATATCAATTT
Found at i:17143261 original size:6 final size:6
Alignment explanation
Indices: 17143250--17143275 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
17143240 AAGCATGCAC
17143250 ATATGT ATATGT ATATGT ATATGT AT
1 ATATGT ATATGT ATATGT ATATGT AT
17143276 GATATGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:17148849 original size:236 final size:235
Alignment explanation
Indices: 17148399--17149580 Score: 1269
Period size: 236 Copynumber: 5.0 Consensus size: 235
17148389 TTTTATAGAT
* ** * * * *
17148399 AAATTTATTCGGTGAAAAGTTTTTTTGTCATGTTTTTTATTTTAGGTGACGTTATAGTTTTGTCA
1 AAATTTATTTGGTGAAAAAATTTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTTATCA
* * * * * * * * *
17148464 CCAAATTAAAATTTTATTTATAAAGAAATTTTTTCTAATAAATTTTCGCTTGCA-TTGTTAATTT
66 CCAATTTAAAATTTTATTTGTGATG-AATTTTTT-TAATAGATTTTAG-GTGAAGTTATTAATTT
* * * * * * * * * * *
17148528 TTGTCATAAAATAAACACTTCAGTTAATTATTAATGATATTACGATTTCGTTACATCAATATATG
128 TTGTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACATCAATGTATG
* * * * *
17148593 GT-TTATAGGACAATAATATAAATGTCACAAACTTTTATCTCC
193 GTATTATATGATAATAACATAAATGTCACAAACTTTTACCGCC
* * ** * * *
17148635 AAATTTAATTGGTGAAAAAAATTTTTGTGACATTTTTTATTTTTGGTAATGTTATAATTTTGTCA
1 AAATTTATTTGGTGAAAAAATTTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTTATCA
* ** * *
17148700 CCAATTAAAAATTTTATTTGTGACAAATTTTTTTGATAGAATTTTAGGTGAAGTTATGAATTTTT
66 CCAATTTAAAATTTTATTTGTGATGAATTTTTTTAATAG-ATTTTAGGTGAAGTTATTAATTTTT
* * ** *
17148765 GTCACAAATTAAACACTTTAGTTAACTATTAAGGACATTATAATTTCACCACATCAATGTATGGT
130 GTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACATCAATGTATGGT
* * * * *
17148830 GTTATATGATAACAATATAAATGTCACAAACCTTTATCGCC
195 ATTATATGATAATAACATAAATGTCACAAACTTTTACCGCC
* *
17148871 AAATTTATTTGGTG-AAAAATGTTTTTGTGATGTTTTTTATTTTAGGTAATGTTATAATTTCATC
1 AAATTTATTTGGTGAAAAAAT-TTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTTATC
* *
17148935 ACCAATTTAAAATTTTATTCGTGATGAATTTTTTTTATAGATTTTAGGT-AACGTTATTAATTTT
65 ACCAATTTAAAATTTTATTTGTGATGAATTTTTTTAATAGATTTTAGGTGAA-GTTATTAATTTT
* * * **
17148999 TGTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCACTTTCATCACGTCAATATATAA
129 TGTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACATCAATGTATGG
* *
17149064 TATTATATGATGATAACATAAATGTCACTAACTTTTACCGCC
194 TATTATATGATAATAACATAAATGTCACAAACTTTTACCGCC
** * *
17149106 AAATTTATTTGGTGGTGGGAAATTTTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTCA
1 AAATTTA-TT--TGGTGAAAAAATTTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTTA
* * * * *
17149171 TCGCCAATTTAAAATTTTATCTGTGATGAATTTTTTTAATAGATTTTAAGTGATGTTATTAAGTT
63 TCACCAATTTAAAATTTTATTTGTGATGAATTTTTTTAATAGATTTTAGGTGAAGTTATTAATTT
* * ** *
17149236 TTGTCACAAATTGAACACTTTAATTAACTATTAATGACATTGTAATTTTGTCACATCAATGTATA
128 TTGTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACATCAATGTATG
*
17149301 GTATTATATTGATGAA-AACATAAATGTCACAAACTTTTACCGTC
193 GTATTATA-TGAT-AATAACATAAATGTCACAAACTTTTACCGCC
* * * *
17149345 AAATTTATTTAGTGAAAAAATTTTTTGGGATGTTTTTTTTTTTATTTTAGGTGACGTAATAATTT
1 AAATTTATTTGGTGAAAAAATTTTTTGTGATG-----TTTTTTATTTTAGGTGATGTTATAATTT
* * * * * ** *
17149410 TATCACCAATTTAGAATTTTATCTATGATGAATTTTTCCTAATAGATTTAAGGTGCCGTTATGAA
61 TATCACCAATTTAAAATTTTATTTGTGATGAATTTTT-TTAATAGATTTTAGGTGAAGTTATTAA
* *
17149475 TTTTTATCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCA-ACTTAATG
125 TTTTTGTCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACA-TCAATG
* * ** *
17149539 TATGGTGTTATATAACGATAAAATAAATGTCACAAACTTTTA
189 TATGGTATTATATGATAATAACATAAATGTCACAAACTTTTA
17149581 AATGATGTTA
Statistics
Matches: 803, Mismatches: 123, Indels: 35
0.84 0.13 0.04
Matches are distributed among these distances:
234 9 0.01
235 199 0.25
236 213 0.27
238 168 0.21
239 42 0.05
240 2 0.00
241 84 0.10
242 86 0.11
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (235 bp):
AAATTTATTTGGTGAAAAAATTTTTTGTGATGTTTTTTATTTTAGGTGATGTTATAATTTTATCA
CCAATTTAAAATTTTATTTGTGATGAATTTTTTTAATAGATTTTAGGTGAAGTTATTAATTTTTG
TCACAAATTGAACACTTTAGTTAACTATTAATGACATTGCAATTTCATCACATCAATGTATGGTA
TTATATGATAATAACATAAATGTCACAAACTTTTACCGCC
Found at i:17150992 original size:39 final size:39
Alignment explanation
Indices: 17150949--17151030 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
17150939 GGCTGAGTTA
*
17150949 ATGTTGCATATTTCTAGAAGTTTTAGCAAATCTTCTGTT
1 ATGTTGCATATTTCTAGAAGTTTTAGCAAATCTTATGTT
* *
17150988 ATGTTGCATATTTCTAGAAGTTTTAGGAAATTTTATGTT
1 ATGTTGCATATTTCTAGAAGTTTTAGCAAATCTTATGTT
17151027 ATGT
1 ATGT
17151031 ATGCCTGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.48
Consensus pattern (39 bp):
ATGTTGCATATTTCTAGAAGTTTTAGCAAATCTTATGTT
Found at i:17156904 original size:13 final size:13
Alignment explanation
Indices: 17156886--17156914 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17156876 GATTGAGACA
17156886 AAATTTAATCGAG
1 AAATTTAATCGAG
17156899 AAATTTAATCGAG
1 AAATTTAATCGAG
17156912 AAA
1 AAA
17156915 AGAGAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (13 bp):
AAATTTAATCGAG
Found at i:17164434 original size:26 final size:26
Alignment explanation
Indices: 17164398--17164451 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17164388 TGTAGCTAAG
17164398 ATAGCTTATATAGTTGGGGGTGATCC
1 ATAGCTTATATAGTTGGGGGTGATCC
17164424 ATAGCTTATATAGTTGGGGGTGATCC
1 ATAGCTTATATAGTTGGGGGTGATCC
17164450 AT
1 AT
17164452 TATTTTAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.11, G:0.30, T:0.35
Consensus pattern (26 bp):
ATAGCTTATATAGTTGGGGGTGATCC
Found at i:17166805 original size:28 final size:28
Alignment explanation
Indices: 17166774--17166834 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
17166764 TGTGATGATT
** *
17166774 ATAGCTTTCAATAACTTTTTTTTCATAA
1 ATAGCTTAAAATAACTTTCTTTTCATAA
17166802 ATAGC-TAAAATAACTTTCTTTTCATAA
1 ATAGCTTAAAATAACTTTCTTTTCATAA
17166829 ATAGCT
1 ATAGCT
17166835 GGCAAAAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (28 bp):
ATAGCTTAAAATAACTTTCTTTTCATAA
Found at i:17166823 original size:27 final size:27
Alignment explanation
Indices: 17166783--17166834 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
17166773 TATAGCTTTC
*
17166783 AATAACTTTTTTTTCATAAATAGCTAA
1 AATAACTTTCTTTTCATAAATAGCTAA
17166810 AATAACTTTCTTTTCATAAATAGCT
1 AATAACTTTCTTTTCATAAATAGCT
17166835 GGCAAAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.44
Consensus pattern (27 bp):
AATAACTTTCTTTTCATAAATAGCTAA
Done.