Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 96 of 160
Found at i:18178086 original size:36 final size:36
Alignment explanation
Indices: 18178046--18178286 Score: 124
Period size: 36 Copynumber: 6.8 Consensus size: 36
18178036 ATTACTTTTG
*
18178046 GTTAGAAGAGCCTTCTTTCAAGTTTCATAGCCTTTA
1 GTTAGAAGAGCCTTCTTTAAAGTTTCATAGCCTTTA
* * * *
18178082 GTTAGATGAGCTTTCTCTAAAGTGTCATAAG-CTTT-
1 GTTAGAAGAGCCTTCTTTAAAGTTTCAT-AGCCTTTA
* * * * *
18178117 GATTAGATGAG-C-TATTTAAAGTTTTATTGCCTCTA
1 G-TTAGAAGAGCCTTCTTTAAAGTTTCATAGCCTTTA
* * * *
18178152 GTTAG-AGAAGCCTTCTTTTAAGTTTCACA-ACTTCTT
1 GTTAGAAG-AGCCTTCTTTAAAGTTTCATAGCCTT-TA
* * * *
18178188 GTTAGAAGAGCTTTCTTTAAAATGTT-ATAGTCTCTA
1 GTTAGAAGAGCCTTCTTTAAAGT-TTCATAGCCTTTA
* * * *
18178224 GTT-GGAGAAG-C-TATTTAAAGTTTCATTGCCTCTA
1 GTTAGAAG-AGCCTTCTTTAAAGTTTCATAGCCTTTA
* * * *
18178258 GCTAGAGGAGCTTTCTTCAAAGTTTCATA
1 GTTAGAAGAGCCTTCTTTAAAGTTTCATA
18178287 ACCTCTGGTT
Statistics
Matches: 148, Mismatches: 41, Indels: 32
0.67 0.19 0.14
Matches are distributed among these distances:
33 4 0.03
34 40 0.27
35 10 0.07
36 86 0.58
37 8 0.05
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (36 bp):
GTTAGAAGAGCCTTCTTTAAAGTTTCATAGCCTTTA
Found at i:18178257 original size:34 final size:36
Alignment explanation
Indices: 18178219--18178285 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 36
18178209 ATGTTATAGT
* *
18178219 CTCTAGTTGGAGAAGCTAT-TT-AAAGTTTCATTGC
1 CTCTAGCTAGAGAAGCTATCTTCAAAGTTTCATTGC
* *
18178253 CTCTAGCTAGAGGAGCTTTCTTCAAAGTTTCAT
1 CTCTAGCTAGAGAAGCTATCTTCAAAGTTTCAT
18178286 AACCTCTGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 15 0.56
35 2 0.07
36 10 0.37
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (36 bp):
CTCTAGCTAGAGAAGCTATCTTCAAAGTTTCATTGC
Found at i:18178550 original size:70 final size:69
Alignment explanation
Indices: 18178476--18178616 Score: 158
Period size: 70 Copynumber: 2.0 Consensus size: 69
18178466 GCCTTCTTTC
* * * * * * *
18178476 AAGTTTCATAGCCTTTGGTTAGAGGAGCTTTTTTTAAAATGTCATAGCAT-TTGCTTAAAGGAGC
1 AAGTTTCATAGCCTCTAGTTAGAAGAGCTTTCTTCAAAATGTCATAGCATCTAG-TTAAAAGAGC
18178540 TATTTA
65 T-TTTA
* * * *
18178546 AAGTTTTATTGCCTCTAGTTAGAAGAGCTTTCTTCAAAGTTTCATAGCATCTAGTTAAAAGAGCT
1 AAGTTTCATAGCCTCTAGTTAGAAGAGCTTTCTTCAAAATGTCATAGCATCTAGTTAAAAGAGCT
18178611 TTTA
66 TTTA
18178615 AA
1 AA
18178617 TTTAAGAGTC
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
69 6 0.10
70 51 0.86
71 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (69 bp):
AAGTTTCATAGCCTCTAGTTAGAAGAGCTTTCTTCAAAATGTCATAGCATCTAGTTAAAAGAGCT
TTTA
Found at i:18178588 original size:411 final size:412
Alignment explanation
Indices: 18177823--18178612 Score: 1108
Period size: 411 Copynumber: 1.9 Consensus size: 412
18177813 CCAAGCATCA
* * **
18177823 ATTTAAAGTTTCATTGCCTCTGGTTAGAGAAGCTTTCTTCAAAGTTTCATAGTCTCTGGTTAGAG
1 ATTTAAAGTTTCATTGCCTCTAGCTAGAGAAGCTTTCTTCAAAGTTTCATAACCTCTGGTTAGAG
* * * *
18177888 AAGCTTTTAAATTTAAGACTTTATACTTAGAGGACTCTTTCAAAATTAGGCATGATTTGTAAGAC
66 AAGCTTTTAAATTTAAGACTCTATA-TTAAAAGAATCTTTCAAAATTAGGCATGATTTGTAAGAC
* * * * *
18177953 CAAAAGACATAATCTATATGACTTCTTATATTTTTAATTTTAAGTTTTATTACCTCTAGTTAAAA
130 CAAAAGACATAATCTATAAGACCTCTTAGATTTTTAATTTAAAGTTTCATTACCTCTAGTTAAAA
* * *
18178018 GAGCTATTTTAAAGTTTTATTACTTTTGGTTAGAAGAGCCTTCTTTCAAGTTTCATAGCCTTTAG
195 GAGCTATTTTAAAGTTTCATTACATGTGGTTAGAAGAGCCTTCTTTCAAGTTTCATAGCCTTTAG
* * * *
18178083 TTAGATGAGCTTTCTCTAAAGTGTCATAAGCTTTGATTAGATGAGCTATTTAAAGTTTTATTGCC
260 TTAGAGGAGCTTTCTCTAAAATGTCATAAGCTTTGATTAAAGGAGCTATTTAAAGTTTTATTGCC
** * * *
18178148 TCTAGTTAGAGAAGCCTTCTTTTAAGTTTCACAACTTCTTGTTAGAAGAGCTTTCTTTAAAATGT
325 TCTAGTTAGAGAAGCCTTCTTCAAAGTTTCACAACATCTAGTTAAAAGAGCTTTCTTTAAAATGT
18178213 TATAGTCTCTAGTTGGAGAAGCT
390 TATAGTCTCTAGTTGGAGAAGCT
*
18178236 ATTTAAAGTTTCATTGCCTCTAGCTAGAGGAGCTTTCTTCAAAGTTTCATAACCTCTGGTTAGAT
1 ATTTAAAGTTTCATTGCCTCTAGCTAGAGAAGCTTTCTTCAAAGTTTCATAACCTCTGGTTAGA-
* * *
18178301 G-AGTTTTTAAATTTAAGGTCTCTAT-TTAAAAGAATCTTTCAAAATTAGGCATGATTTGTGAGA
65 GAAGCTTTTAAATTTAA-GACTCTATATTAAAAGAATCTTTCAAAATTAGGCATGATTTGTAAGA
* * *
18178364 CCAAAGGACATAATCTATAAGACCTCTTAGATTTTTAATTTAAAGTTTCATTACCTTTAGTT-AC
129 CCAAAAGACATAATCTATAAGACCTCTTAGATTTTTAATTTAAAGTTTCATTACCTCTAGTTAAA
*
18178428 AGAAGCTA-TTTAAAGTTTCATTGCATGTGGTTAG-AGAAGCCTTCTTTCAAGTTTCATAGCCTT
194 AG-AGCTATTTTAAAGTTTCATTACATGTGGTTAGAAG-AGCCTTCTTTCAAGTTTCATAGCCTT
* * * *
18178491 TGGTTAGAGGAGCTTTTTTTAAAATGTCAT-AGCATTTGCTTAAAGGAGCTATTTAAAGTTTTAT
257 TAGTTAGAGGAGCTTTCTCTAAAATGTCATAAGC-TTTGATTAAAGGAGCTATTTAAAGTTTTAT
* * *
18178555 TGCCTCTAGTTAGA-AGAGCTTTCTTCAAAGTTTCATAGCATCTAGTTAAAAGAGCTTT
321 TGCCTCTAGTTAGAGA-AGCCTTCTTCAAAGTTTCACAACATCTAGTTAAAAGAGCTTT
18178613 TAAATTTAAG
Statistics
Matches: 331, Mismatches: 40, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
410 6 0.02
411 151 0.46
412 94 0.28
413 73 0.22
414 7 0.02
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (412 bp):
ATTTAAAGTTTCATTGCCTCTAGCTAGAGAAGCTTTCTTCAAAGTTTCATAACCTCTGGTTAGAG
AAGCTTTTAAATTTAAGACTCTATATTAAAAGAATCTTTCAAAATTAGGCATGATTTGTAAGACC
AAAAGACATAATCTATAAGACCTCTTAGATTTTTAATTTAAAGTTTCATTACCTCTAGTTAAAAG
AGCTATTTTAAAGTTTCATTACATGTGGTTAGAAGAGCCTTCTTTCAAGTTTCATAGCCTTTAGT
TAGAGGAGCTTTCTCTAAAATGTCATAAGCTTTGATTAAAGGAGCTATTTAAAGTTTTATTGCCT
CTAGTTAGAGAAGCCTTCTTCAAAGTTTCACAACATCTAGTTAAAAGAGCTTTCTTTAAAATGTT
ATAGTCTCTAGTTGGAGAAGCT
Found at i:18180638 original size:19 final size:19
Alignment explanation
Indices: 18180616--18180656 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
18180606 TTGATCTTGA
18180616 TTTTAATTTTTACTTTTTT
1 TTTTAATTTTTACTTTTTT
** *
18180635 TTTTTTTTTTTGCTTTTTT
1 TTTTAATTTTTACTTTTTT
18180654 TTT
1 TTT
18180657 AGGATTTCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.07, C:0.05, G:0.02, T:0.85
Consensus pattern (19 bp):
TTTTAATTTTTACTTTTTT
Found at i:18183487 original size:23 final size:22
Alignment explanation
Indices: 18183447--18183545 Score: 112
Period size: 23 Copynumber: 4.4 Consensus size: 22
18183437 TCCAACATTG
18183447 TGCAAATGCAATGATTTAAACAAA
1 TGCAAATGC-ATGATTTAAA-AAA
18183471 TGCAAATGCATGATTTAAAAAGA
1 TGCAAATGCATGATTTAAAAA-A
* * **
18183494 TGCAAATGC-TTA-CTAAATTA
1 TGCAAATGCATGATTTAAAAAA
18183514 TGCAAATGCATGATTTAAACAAA
1 TGCAAATGCATGATTTAAA-AAA
18183537 TGCAAATGC
1 TGCAAATGC
18183546 TTAGTAATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
20 10 0.16
21 6 0.10
22 8 0.13
23 30 0.48
24 9 0.14
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.27
Consensus pattern (22 bp):
TGCAAATGCATGATTTAAAAAA
Found at i:18186383 original size:25 final size:26
Alignment explanation
Indices: 18186331--18186383 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
18186321 ATTTATATTT
*
18186331 TAATATTATTTAATATTTAAAATGTTGA
1 TAATATTATTTAATA--TAAAATATTGA
*
18186359 TAATTTTATTTAATA-AAAATATTGA
1 TAATATTATTTAATATAAAATATTGA
18186384 CACATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 9 0.39
28 14 0.61
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (26 bp):
TAATATTATTTAATATAAAATATTGA
Found at i:18186949 original size:2 final size:2
Alignment explanation
Indices: 18186942--18186985 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
18186932 AAACTACTCC
18186942 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18186984 TA
1 TA
18186986 GCATAAACCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18187351 original size:18 final size:18
Alignment explanation
Indices: 18187324--18187362 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
18187314 GGTCTTATCG
*
18187324 TCGTCGTCTTCTT-CTTCT
1 TCGTCATCTT-TTGCTTCT
18187342 TCGTCATCTTTTGCTTCT
1 TCGTCATCTTTTGCTTCT
18187360 TCG
1 TCG
18187363 ACAAGCTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.03, C:0.31, G:0.13, T:0.54
Consensus pattern (18 bp):
TCGTCATCTTTTGCTTCT
Found at i:18189499 original size:26 final size:28
Alignment explanation
Indices: 18189445--18189521 Score: 95
Period size: 26 Copynumber: 2.8 Consensus size: 28
18189435 TATTTTTTAA
*
18189445 ATGAGAATATTTAAATTTTAACTTATCAT
1 ATGAAAATATTTAAATTTTAAC-TATCAT
*
18189474 ATGAAAATTTTTAAATTTTAA-T-TCAT
1 ATGAAAATATTTAAATTTTAACTATCAT
* *
18189500 ATGTAAATATTTGAATTTTAAC
1 ATGAAAATATTTAAATTTTAAC
18189522 ATTTTCATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 22 0.52
27 1 0.02
29 19 0.45
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (28 bp):
ATGAAAATATTTAAATTTTAACTATCAT
Found at i:18189827 original size:21 final size:22
Alignment explanation
Indices: 18189801--18189858 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
18189791 TATTTATTAG
18189801 TTTTGTGAATTTTTGAAATGT-
1 TTTTGTGAATTTTTGAAATGTA
* *
18189822 TTTTGTGAATTTTT-TAATTTA
1 TTTTGTGAATTTTTGAAATGTA
*
18189843 TTTTGTGAATCTTTGA
1 TTTTGTGAATTTTTGA
18189859 TCCTTTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 4 0.13
21 27 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (22 bp):
TTTTGTGAATTTTTGAAATGTA
Found at i:18189866 original size:41 final size:40
Alignment explanation
Indices: 18189772--18189876 Score: 108
Period size: 41 Copynumber: 2.6 Consensus size: 40
18189762 TTTGTAAAAT
* *
18189772 TTTGAA-CTCTTTTGTGAATTATTTATTAGTTTTGTGAATT
1 TTTGAATCT-TTTTGTGAATTTTTTATTAGTTTTGTGAATC
*
18189812 TTTGAAATGTTTTTGTGAATTTTTTAATTTA-TTTTGTGAATC
1 TTTG-AATCTTTTTGTGAATTTTTT-A-TTAGTTTTGTGAATC
*
18189854 TTTG-ATCCTTTTTGTGAGTTTTT
1 TTTGAAT-CTTTTTGTGAATTTTT
18189877 AAACTTTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
40 6 0.11
41 30 0.55
42 16 0.29
43 3 0.05
ACGTcount: A:0.20, C:0.05, G:0.15, T:0.60
Consensus pattern (40 bp):
TTTGAATCTTTTTGTGAATTTTTTATTAGTTTTGTGAATC
Found at i:18189885 original size:20 final size:20
Alignment explanation
Indices: 18189741--18189887 Score: 88
Period size: 20 Copynumber: 7.2 Consensus size: 20
18189731 TTTTTATTTC
*
18189741 TTTTGTGAATCTTTAAA-TT
1 TTTTGTGAATTTTTAAACTT
* * * *
18189760 CTTTTGTAAAATTTTGAACTC
1 -TTTTGTGAATTTTTAAACTT
18189781 TTTTGTGAATTATTT--A-TT
1 TTTTGTGAATT-TTTAAACTT
18189799 AGTTTTGTGAATTTTTGAAA-TGT
1 --TTTTGTGAATTTTT-AAACT-T
* *
18189822 TTTTGTGAATTTTTTAATTT
1 TTTTGTGAATTTTTAAACTT
* * * *
18189842 ATTTTGTGAATCTTTGATCCT
1 -TTTTGTGAATTTTTAAACTT
*
18189863 TTTTGTGAGTTTTTAAACTT
1 TTTTGTGAATTTTTAAACTT
18189883 TTTTG
1 TTTTG
18189888 CAAACTTCAA
Statistics
Matches: 98, Mismatches: 19, Indels: 20
0.72 0.14 0.15
Matches are distributed among these distances:
18 1 0.01
19 4 0.04
20 56 0.57
21 34 0.35
22 2 0.02
23 1 0.01
ACGTcount: A:0.22, C:0.05, G:0.14, T:0.59
Consensus pattern (20 bp):
TTTTGTGAATTTTTAAACTT
Found at i:18191626 original size:24 final size:25
Alignment explanation
Indices: 18191581--18191627 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
18191571 TGAAAGATTT
* *
18191581 AAATAAAAAATTTAATATTAAATAA
1 AAATAAAAAATTTAAAAATAAATAA
*
18191606 AAAT-AAAGATTTAAAAATAAAT
1 AAATAAAAAATTTAAAAATAAAT
18191628 TAACTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (25 bp):
AAATAAAAAATTTAAAAATAAATAA
Found at i:18192315 original size:20 final size:20
Alignment explanation
Indices: 18192290--18192329 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
18192280 TTTAATATTT
18192290 AAATAATAAAAT-TTTAATTA
1 AAATAA-AAAATATTTAATTA
*
18192310 AAATAAAAATTATTTAATTA
1 AAATAAAAAATATTTAATTA
18192330 CGATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATAAAAAATATTTAATTA
Found at i:18199185 original size:15 final size:16
Alignment explanation
Indices: 18199165--18199196 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
18199155 AATTAAATCT
18199165 AATT-AAAAAAATAAA
1 AATTAAAAAAAATAAA
18199180 AATTAAAAAAAATAAA
1 AATTAAAAAAAATAAA
18199196 A
1 A
18199197 TTCTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AATTAAAAAAAATAAA
Found at i:18200364 original size:25 final size:26
Alignment explanation
Indices: 18200322--18200370 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
18200312 AAATAATTAT
18200322 ATATATTTTATTAAATATA-CATATA
1 ATATATTTTATTAAATATATCATATA
* **
18200347 ATATATTTTGTTTTATATATCATA
1 ATATATTTTATTAAATATATCATA
18200371 ATTTTATATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTATTAAATATATCATATA
Found at i:18200894 original size:121 final size:120
Alignment explanation
Indices: 18200687--18200915 Score: 284
Period size: 121 Copynumber: 1.9 Consensus size: 120
18200677 AATTGAAGGA
* *
18200687 GATTATTTAAAGTATTTTTGGCAAAAAAATGCATTGAATAATCTTTACAAAAATTGAATAGGATT
1 GATTATTTAAAGCATTTTTGGCAAAAAAATGCATTGAATAATCTTTACAAAAATTGAAGAGGATT
18200752 ACTAATGGCATTTCTAGCCAAAACACACATTGAATAATCCCTTCCCTTTTTTTAGG
66 ACTAATGGCATTTCTAGCCAAAA-ACACATTGAATAATCCCTTCCCTTTTTTTAGG
* * * * *
18200808 GATTATTTAAAGCGTTTTTGGCAAAAAAATATC-TTGAATAATCTTTTATAAAAATTGGAGGGGA
1 GATTATTTAAAGCATTTTTGGCAAAAAAAT-GCATTGAATAATC-TTTACAAAAATTGAAGAGGA
* * * * **
18200872 TTATTCAAT-GCGTTTGT-TCCAAAAACAGTTTGAATAATCCCTTC
64 TTACT-AATGGCATTTCTAGCCAAAAACACATTGAATAATCCCTTC
18200916 ATAAAAATTG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
120 18 0.20
121 44 0.48
122 27 0.29
123 3 0.03
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (120 bp):
GATTATTTAAAGCATTTTTGGCAAAAAAATGCATTGAATAATCTTTACAAAAATTGAAGAGGATT
ACTAATGGCATTTCTAGCCAAAAACACATTGAATAATCCCTTCCCTTTTTTTAGG
Found at i:18200957 original size:61 final size:60
Alignment explanation
Indices: 18200805--18201121 Score: 225
Period size: 61 Copynumber: 5.2 Consensus size: 60
18200795 CCCTTTTTTT
* * * * * **
18200805 AGGGATTATTTAAAGCGTTTTTGGCAAAAAAATATCTTGAATAAT-CTTTTATAAAAATTGGA
1 AGGGATTA-TTAAAGCGTTTTTAGC--AAAAACACCTTGAATAATCCCTTCATAAAAATTAAA
* * * ** *
18200867 GGGGATTATTCAATGCGTTTGTT-CCAAAAACAGTTTGAATAATCCCTTCATAAAAATTGAA
1 AGGGATTATT-AAAGCGTTT-TTAGCAAAAACACCTTGAATAATCCCTTCATAAAAATTAAA
* * *** *
18200928 AGGGATTATTAAAGCGTTTTTAGCTAAAAACACCTTGAATAA-CCCTACTTAATTTTTATAT
1 AGGGATTATTAAAGCGTTTTTAGC-AAAAACACCTTGAATAATCCCTTCATAAAAATTA-AA
* *
18200989 A-GGATTATTCAAGGAGTTTTCTAAGCAAAAACACCTTGAATAATCCC--CAATAAAAAATTAAA
1 AGGGATTATT-AAAGCGTTTT-T-AGCAAAAACACCTTGAATAATCCCTTC-AT-AAAAATTAAA
* * * *
18201051 AGGGATTATTTAAGGGTTTTTAGCCAAAAATACCTTGAATAATTACC-TCATAAAAATTAAA
1 AGGGATTATTAAAGCGTTTTTAG-CAAAAACACCTTGAATAA-TCCCTTCATAAAAATTAAA
*
18201112 AGAGATTATT
1 AGGGATTATT
18201122 GAAGGTATTT
Statistics
Matches: 205, Mismatches: 34, Indels: 33
0.75 0.12 0.12
Matches are distributed among these distances:
59 2 0.01
60 44 0.21
61 88 0.43
62 49 0.24
63 22 0.11
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (60 bp):
AGGGATTATTAAAGCGTTTTTAGCAAAAACACCTTGAATAATCCCTTCATAAAAATTAAA
Found at i:18201328 original size:62 final size:58
Alignment explanation
Indices: 18201179--18201328 Score: 133
Period size: 62 Copynumber: 2.5 Consensus size: 58
18201169 TTTTGTAAGG
* *
18201179 GATTATTGAAGGCGTTTCTGACAAAAAATACCTTGAATAATCCCAAAAAAAATGGCAAGA
1 GATTATTCAAGGCGTTTTTGAC-AAAAA-ACCTTGAATAATCCCAAAAAAAATGGCAAGA
** * * * *
18201239 GATTATTCAAGGTATTTTT-AGCCAAAAACGCTTGAATAATTCCTTACAAAAAATTG-AATGTA
1 GATTATTCAAGGCGTTTTTGA-CAAAAAAC-CTTGAATAA-TCC-CAAAAAAAATGGCAA-G-A
*
18201301 GGTTATTCAAGGCGTTTTTGACAAAAAA
1 GATTATTCAAGGCGTTTTTGACAAAAAA
18201329 TACCTTTAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
58 2 0.03
59 14 0.20
60 21 0.30
61 10 0.14
62 23 0.32
63 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.29
Consensus pattern (58 bp):
GATTATTCAAGGCGTTTTTGACAAAAAACCTTGAATAATCCCAAAAAAAATGGCAAGA
Found at i:18201402 original size:62 final size:63
Alignment explanation
Indices: 18201237--18201402 Score: 155
Period size: 62 Copynumber: 2.7 Consensus size: 63
18201227 AAAATGGCAA
* * *
18201237 GAGATTATTCAAGGTATTTTTAGCCAAAAACGC-TTGAATAATTCCTTACAAAAAATTGAATG
1 GAGATTATTCAAGGCATTTTTAGCAAAAAACGCTTTGAATAATTCCCTACAAAAAATTGAATG
* * * **
18201299 TAGGTTATTCAAGGCGTTTTT-GACAAAAAATAC-CTTT-AATAATTCCCT-CATAAAAATT-TT
1 GAGATTATTCAAGGCATTTTTAG-C-AAAAA-ACGCTTTGAATAATTCCCTACA-AAAAATTGAA
18201359 TG
62 TG
* * *
18201361 GAGATTATTTAAGGCATTTTTAGCTAGAAACGCTTTGAATAA
1 GAGATTATTCAAGGCATTTTTAGCAAAAAACGCTTTGAATAA
18201403 CCCTATTCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 16
0.73 0.12 0.14
Matches are distributed among these distances:
60 2 0.02
61 8 0.10
62 45 0.55
63 23 0.28
64 4 0.05
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (63 bp):
GAGATTATTCAAGGCATTTTTAGCAAAAAACGCTTTGAATAATTCCCTACAAAAAATTGAATG
Found at i:18201442 original size:124 final size:124
Alignment explanation
Indices: 18201050--18201443 Score: 338
Period size: 124 Copynumber: 3.2 Consensus size: 124
18201040 AAAAAATTAA
* * * *
18201050 AAGGGATTATT-TAAGGGTTTTT-AGCCAAAAATACCTTGAATAATTACCTCATAAAAATTAAAA
1 AAGGGATTATTGAAAGCGTTTTTGA-CAAAAAATACCTTGAATAATTCCCTCATAAAAATTAAAA
* * * * *
18201113 GAGATTATTGAAGGTATTTTT-GGTAAAAAAATGCTTTAAATAACCCTATTCAATTTTTTTGT
65 GAGATTATTCAAGGTATTTTTAGCT--AAAAACGCTTTGAATAACCCTATTCAA-TTTTTTAT
* * * * ***
18201175 AAGGGATTATTGAAGGCGTTTCTGACAAAAAATACCTTGAATAA-TCCC-AAAAAAAATGGCAAG
1 AAGGGATTATTGAAAGCGTTTTTGACAAAAAATACCTTGAATAATTCCCTCATAAAAATTAAAAG
* * * *** *
18201238 AGATTATTCAAGGTATTTTTAGCCAAAAACGC-TTGAATAATTCCT-TACAAAAAATTGA-
66 AGATTATTCAAGGTATTTTTAGCTAAAAACGCTTTGAATAA-CCCTATTC-AATTTTTTAT
* * * * ***
18201296 ATGTAGG-TTATTCAAGGCGTTTTTGACAAAAAATACCTTTAATAATTCCCTCATAAAAATTTTT
1 AAG--GGATTATTGAAAGCGTTTTTGACAAAAAATACCTTGAATAATTCCCTCATAAAAATTAAA
* * * *
18201360 GGAGATTATTTAAGGCATTTTTAGCTAGAAACGCTTTGAATAACCCTATTCAATTTTTTAT
64 AGAGATTATTCAAGGTATTTTTAGCTAAAAACGCTTTGAATAACCCTATTCAATTTTTTAT
*
18201421 AAGGGATTATTGAAAGTGTTTTT
1 AAGGGATTATTGAAAGCGTTTTT
18201444 CATGCCAAAT
Statistics
Matches: 208, Mismatches: 48, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
121 2 0.01
122 46 0.22
123 20 0.10
124 87 0.42
125 27 0.13
126 25 0.12
127 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (124 bp):
AAGGGATTATTGAAAGCGTTTTTGACAAAAAATACCTTGAATAATTCCCTCATAAAAATTAAAAG
AGATTATTCAAGGTATTTTTAGCTAAAAACGCTTTGAATAACCCTATTCAATTTTTTAT
Found at i:18206533 original size:236 final size:235
Alignment explanation
Indices: 18206104--18207294 Score: 930
Period size: 236 Copynumber: 5.1 Consensus size: 235
18206094 CAACTTATTA
* * * * * * * *
18206104 TATGATTGTTCTTACCTTTAATTATATTTATAATTGTCATTACTTTTTCTTAGTGTGTTACAACA
1 TATGATTGTTCTTATCTTTCATTATGTTTAAAATTATCATAACTCTTTCTTAGTGT-ATACAA-A
* * * * * *
18206169 CTTT-TTATTCATTTTATGTCAAATTATACTAATTTTATGTTTTTCTCACTTTTTTACATTATCT
64 ATTTCTTATCCATTTTATGCCAAATAATACTAATTTTACGTTTTTCTCACTTGTTTACATTA-CT
* * * *
18206233 -ATTTGTTTTTCAATTTTTAACTATTTTCCTTATATATTTA-AAAAATAATAATTAATTAAAAAT
128 AATTTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAATT
* *
18206296 TTACATTAACAACATAATTATTTATGTTACAATAATATATTTT
193 TTACATTGACAACATAATTATTTATATTACAATAATATATTTT
* * *
18206339 TACGGTTGTTCTTATCTTCCATTATGTTTAAAATTATCATAACTCTTTCTTAGTGTGATACAAAA
1 TATGATTGTTCTTATCTTTCATTATGTTTAAAATTATCATAACTCTTTCTTAGTGT-ATACAAAA
* * ** *
18206404 TTTCTTACCCATTTTACGCCAAATAATACTAATTTTACGTTTCTTCTTTCTTGTTTATATTACTA
65 TTTCTTATCCATTTTATGCCAAATAATACTAATTTTACGTTT-TTCTCACTTGTTTACATTACTA
*
18206469 ATTTGTTTTTTAATTTTTAGCTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAATTT
129 ATTTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAATTT
* *
18206534 TACATTG-CTATCATAATTATTT-TATTATAATAATATTTTTTTATTTT
194 TACATTGAC-AACATAATTATTTATATTACAATAATA------TATTTT
* * * * * * * *
18206581 TATGATTGTTTTTA-CTTTCTATTATGTTTACAATTGTTATAACTCTTTCTTAGTATTTTACGAC
1 TATGATTGTTCTTATCTTTC-ATTATGTTTAAAATTATCATAACTCTTTCTTAGT-GTATACAAA
* * ** * * * *
18206645 ACTTCTTACCCATTTTACACCTAATGATACTAA-TTTACATTTTT-T-GCTTGTTTACATTA-TC
64 ATTTCTTATCCATTTTATGCCAAATAATACTAATTTTACGTTTTTCTCACTTGTTTACATTACT-
* * *
18206706 AATTTGTTTTTTAATTTTTAGCTA-TTTT-TTATATTTAT-CAAAAA-AATAAATAATTAAAATT
128 AATTTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAATT
* *
18206767 TTACATTGTCAACATAATTATTTACT-TTACAATAATATCTTTT
193 TTACATTGACAACATAATTATTTA-TATTACAATAATATATTTT
* * * ** * * * *
18206810 TATGTTTGTTTTTATTTTTCATTACATTTAAAATTATCATAA-TATTTTCTTAATATATTACGAC
1 TATGATTGTTCTTATCTTTCATTATGTTTAAAATTATCATAACT-CTTTCTTAGTGTA-TAC-AA
* * ** * * *
18206874 ACTTT-TTATCTATTTTATATCAAATGATACTAATTTTACGTTTGTTCTCACATGTTTACTTTAA
63 AATTTCTTATCCATTTTATGCCAAATAATACTAATTTTACGTTT-TTCTCACTTGTTTACATT-A
* * ** * * *
18206938 C-AATTTATTTTTGAATTGCTATCTATTTTTCTTAAATATTTAC-AAAATAATAATTAATTAAAA
126 CTAATTTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAA
** ** * * ** ** * *
18207001 TTTTATGTTGTTAATAAAATTCCTTACGTTATAATAATATATTAT
191 TTTTACATTGACAACATAATTATTTATATTACAATAATATATTTT
* * * * ** *
18207046 TATTG-TTATTCTTATTTTTTATTATGTTTGAAATGT-T-ATAA-TGAGTT-TTAGTGTATTGCT
1 TA-TGATTGTTCTTATCTTTCATTATGTTTAAAAT-TATCATAACT-CTTTCTTAGTGTA-TAC-
* * * * *
18207106 ACAA-TTCATATCCATTTTATGCTAAATAATACTAATTTTATGTTTTTTCTCCCTTGTTTACATT
61 AAAATTTCTTATCCATTTTATGCCAAATAATACTAATTTTACG-TTTTTCTCACTTGTTTACATT
* * ***
18207170 ACTAATATGTTTTTTAA--TTTAACTATTTTTCTTATATGT-T-TTTAAA-AATAATTAATTAAA
125 ACTAATTTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAA
* * * * * *
18207230 ATTTTACATTGATAACTTAATTATTTACATTACAATTATTTGTTTT
190 ATTTTACATTGACAACATAATTATTTATATTACAATAATATATTTT
*
18207276 TATGATTGTTCTTACCTTT
1 TATGATTGTTCTTATCTTT
18207295 AATTTGTAGA
Statistics
Matches: 767, Mismatches: 150, Indels: 83
0.77 0.15 0.08
Matches are distributed among these distances:
228 2 0.00
229 71 0.09
230 73 0.10
231 6 0.01
232 18 0.02
233 33 0.04
234 111 0.14
235 124 0.16
236 147 0.19
237 49 0.06
238 36 0.05
239 1 0.00
240 2 0.00
241 12 0.02
242 81 0.11
243 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.52
Consensus pattern (235 bp):
TATGATTGTTCTTATCTTTCATTATGTTTAAAATTATCATAACTCTTTCTTAGTGTATACAAAAT
TTCTTATCCATTTTATGCCAAATAATACTAATTTTACGTTTTTCTCACTTGTTTACATTACTAAT
TTGTTTTTTAATTTTTAACTATTTTTCTTATATATATACAAAAATAATAATTAATTAAAATTTTA
CATTGACAACATAATTATTTATATTACAATAATATATTTT
Found at i:18207572 original size:11 final size:11
Alignment explanation
Indices: 18207540--18207572 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
18207530 CCTTGAACAC
*
18207540 ACAAAAGCAAC
1 ACAAAAGCAAA
18207551 ACAAAAG-AAA
1 ACAAAAGCAAA
18207561 ACAAAAGCAAA
1 ACAAAAGCAAA
18207572 A
1 A
18207573 AAAGGGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.73, C:0.18, G:0.09, T:0.00
Consensus pattern (11 bp):
ACAAAAGCAAA
Found at i:18207623 original size:20 final size:20
Alignment explanation
Indices: 18207600--18207643 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
18207590 GTAAAAGCAA
*
18207600 TTTTATAATTTTTAGAAATT
1 TTTTAGAATTTTTAGAAATT
* *
18207620 TTTTAGAATTTTTGGTAATT
1 TTTTAGAATTTTTAGAAATT
18207640 TTTT
1 TTTT
18207644 TTTGGGAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (20 bp):
TTTTAGAATTTTTAGAAATT
Found at i:18207655 original size:13 final size:14
Alignment explanation
Indices: 18207628--18207658 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18207618 TTTTTTAGAA
*
18207628 TTTTTGGTAATTTT
1 TTTTTGGGAATTTT
18207642 TTTTTGGGAATTTT
1 TTTTTGGGAATTTT
18207656 TTT
1 TTT
18207659 GAAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (14 bp):
TTTTTGGGAATTTT
Found at i:18208074 original size:4 final size:4
Alignment explanation
Indices: 18208050--18208113 Score: 51
Period size: 4 Copynumber: 15.8 Consensus size: 4
18208040 GCTGAGCTAT
* *
18208050 TTTA TTTT TTTGA TATTA TTTA TTTA TTTTA TTTA TTTG TTT- TTTA -TTA
1 TTTA TTTA TTT-A T-TTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA
* *
18208099 TGTG TTTA TTTA TTT
1 TTTA TTTA TTTA TTT
18208114 TTAGGAGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
3 6 0.12
4 33 0.69
5 7 0.15
6 2 0.04
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:18208082 original size:9 final size:9
Alignment explanation
Indices: 18208047--18208087 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
18208037 TGAGCTGAGC
18208047 TATTTTATT
1 TATTTTATT
18208056 T-TTTTGATAT
1 TATTTT-AT-T
18208066 TA-TTTATT
1 TATTTTATT
18208074 TATTTTATT
1 TATTTTATT
18208083 TATTT
1 TATTT
18208088 GTTTTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 7 0.25
9 16 0.57
10 5 0.18
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (9 bp):
TATTTTATT
Found at i:18208088 original size:27 final size:25
Alignment explanation
Indices: 18208047--18208113 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
18208037 TGAGCTGAGC
*
18208047 TATTTTATTTTTTTGATATTATTTATT-
1 TATTTTATTTATTTG-T-TT-TTTATTA
18208074 TATTTTATTTATTTGTTTTTTATTA
1 TATTTTATTTATTTGTTTTTTATTA
*
18208099 TGTGTTTATTTATTT
1 TAT-TTTATTTATTT
18208114 TTAGGAGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 6 0.17
25 4 0.11
26 12 0.33
27 14 0.39
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (25 bp):
TATTTTATTTATTTGTTTTTTATTA
Found at i:18208096 original size:15 final size:15
Alignment explanation
Indices: 18208076--18208113 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
18208066 TATTTATTTA
*
18208076 TTTTATTTATTTGTT
1 TTTTATTTATGTGTT
18208091 TTTTA-TTATGTGTT
1 TTTTATTTATGTGTT
18208105 TATTTATTT
1 T-TTTATTT
18208114 TTAGGAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 9 0.45
15 9 0.45
16 2 0.10
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (15 bp):
TTTTATTTATGTGTT
Found at i:18208098 original size:31 final size:30
Alignment explanation
Indices: 18208050--18208113 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
18208040 GCTGAGCTAT
*
18208050 TTTATTTTTTTGATATTATTTATTTATTTTA
1 TTTATTTTTTTGATATTATGTATTTA-TTTA
* *
18208081 TTTATTTGTTTT-TTATTATGTGTTTATTTA
1 TTTATTT-TTTTGATATTATGTATTTATTTA
18208111 TTT
1 TTT
18208114 TTAGGAGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 7 0.24
31 18 0.62
32 4 0.14
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (30 bp):
TTTATTTTTTTGATATTATGTATTTATTTA
Found at i:18212329 original size:19 final size:20
Alignment explanation
Indices: 18212302--18212339 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
18212292 TAAAAGGTCT
*
18212302 CAAATAAAAAGAAA-AAAAA
1 CAAAAAAAAAGAAAGAAAAA
18212321 CAAAAAAAAAGAAAGAAAA
1 CAAAAAAAAAGAAAGAAAA
18212340 GAGAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.84, C:0.05, G:0.08, T:0.03
Consensus pattern (20 bp):
CAAAAAAAAAGAAAGAAAAA
Found at i:18212724 original size:16 final size:15
Alignment explanation
Indices: 18212703--18212754 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 15
18212693 CTAATGAATG
18212703 AAAAATGAGAAGAAAA
1 AAAAATGAGAA-AAAA
18212719 AAAAATGAGAAAAAA
1 AAAAATGAGAAAAAA
* *
18212734 ATGAAAAGGTGAAAAAA
1 A--AAAATGAGAAAAAA
18212751 AAAA
1 AAAA
18212755 GAGAAAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 8 0.25
16 11 0.34
17 13 0.41
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (15 bp):
AAAAATGAGAAAAAA
Found at i:18213454 original size:79 final size:79
Alignment explanation
Indices: 18213352--18213522 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
18213342 TTTGTGAGAT
* *
18213352 GTGATCAAATGATGAAAATAATATAGATCAGTAGATGA-AATTCATTCTGGAATGGCTAGTGTTG
1 GTGATCAAATGATGAAAATAATATAGATCAATAGA-GAGAATTCATTCTGAAATGGCTAGTGTTG
18213416 A-AAAGCCTATGAATG
65 AGAAA-CCTATGAATG
* * * * * * *
18213431 GTGATCAAGTGATGAACATAATATGGATCAATTGAGAGAATTTATTTTGAAATTGCTAGTGTTGA
1 GTGATCAAATGATGAAAATAATATAGATCAATAGAGAGAATTCATTCTGAAATGGCTAGTGTTGA
* *
18213496 GAAACCTATGAGTT
66 GAAACCTATGAATG
*
18213510 GTGATTAAATGAT
1 GTGATCAAATGAT
18213523 ATGGGGTAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 2 0.03
79 72 0.94
80 3 0.04
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (79 bp):
GTGATCAAATGATGAAAATAATATAGATCAATAGAGAGAATTCATTCTGAAATGGCTAGTGTTGA
GAAACCTATGAATG
Found at i:18213568 original size:70 final size:70
Alignment explanation
Indices: 18213469--18213646 Score: 250
Period size: 70 Copynumber: 2.5 Consensus size: 70
18213459 CAATTGAGAG
* * * * *
18213469 AATTTATTTTGAAATTGCTAGTGTTGAGAAACCTATGAGTTGTGATTAAATGATATGGGGTAATG
1 AATTTATTCTAAAATTGTTAGTGTTGAGAAACCTATGAGTTGTGATTAAATGATATGGGGCAATA
*
18213534 GATGAA
66 GA-CAA
*
18213540 AA-TTATTCTAAAATTGTTAGTGTCGAGAAACCTATGAGTTGTGATTAAATGATATGGGGCAATA
1 AATTTATTCTAAAATTGTTAGTGTTGAGAAACCTATGAGTTGTGATTAAATGATATGGGGCAATA
18213604 GACAA
66 GACAA
* * *
18213609 AATTTGTTCTAAAATTGTTAGTGTTGATAAGCCTATGA
1 AATTTATTCTAAAATTGTTAGTGTTGAGAAACCTATGA
18213647 ATGGTAACCA
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
69 4 0.04
70 89 0.94
71 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (70 bp):
AATTTATTCTAAAATTGTTAGTGTTGAGAAACCTATGAGTTGTGATTAAATGATATGGGGCAATA
GACAA
Found at i:18214637 original size:41 final size:41
Alignment explanation
Indices: 18214578--18214900 Score: 339
Period size: 41 Copynumber: 7.9 Consensus size: 41
18214568 ATGATTGTCA
* *
18214578 AAGAGCCTTTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAG
1 AAGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
* * *
18214619 AAGAGCATTTTATATTTCAAAGTTGTGATGCCTCTATTTAG
1 AAGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
* * *
18214660 AGGAGCATTTTATTTTTCAAAAGTTGTGGTGTCACTGTTTAG
1 AAGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAG
* * * *
18214702 ATGAGTATTTT-TCTTTTTAAAGTTGTGGTGCCTCTATTTAG
1 AAGAGCATTTTAT-TTTTCAAAGTTGTGGTGCCTCTGTTTAG
* * * *
18214743 AAGAGCATTTTATTTTCCAAAG-TGTGGTGTCTCTATTTAA
1 AAGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
*
18214783 AAGAGCA-TTTATTTTTTCAAAAGTTATGGTGCCTCTGTTTAG
1 AAGAGCATTTTA-TTTTTC-AAAGTTGTGGTGCCTCTGTTTAG
* * * *
18214825 AGGAGCA-TTTATTTTTTAAAAGTTATTGTGCCTCTGTTTAG
1 AAGAGCATTTTA-TTTTTCAAAGTTGTGGTGCCTCTGTTTAG
* ** * *
18214866 AGGAGTTTTTTATTTTTCAAAGTTGTTGAGCCTCT
1 AAGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCT
18214901 ATTCAAATGA
Statistics
Matches: 239, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.02
40 28 0.12
41 140 0.59
42 67 0.28
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (41 bp):
AAGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
Found at i:18214724 original size:83 final size:82
Alignment explanation
Indices: 18214580--18214903 Score: 336
Period size: 83 Copynumber: 3.9 Consensus size: 82
18214570 GATTGTCAAA
* * * *
18214580 GAGCCTTTTATTTTTC-AAAGTTGTGGTGCCTTTGTTTAGAAGAGCATTTTATATTTCAAAGTTG
1 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTT-TTTTTTAAAGTTG
18214644 TGATGCCTCTATTTAGAG
65 TGATGCCTCTATTTAGAG
* * * *
18214662 GAGCATTTTATTTTTCAAAAGTTGTGGTGTCACTGTTTAGATGAGTATTTTTCTTTTTAAAGTTG
1 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTT-TTTTTAAAGTTG
* *
18214727 TGGTGCCTCTATTTAGAA
65 TGATGCCTCTATTTAGAG
* * * * *
18214745 GAGCATTTTA-TTTTCCAAAG-TGTGGTGTCTCTATTTAAAAGAGCATTTATTTTTTCAAAAGTT
1 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTT-TTTTTT-TAAAGTT
* * *
18214808 ATGGTGCCTCTGTTTAGAG
64 GTGATGCCTCTATTTAGAG
* * * * *
18214827 GAGCA-TTTATTTTTTAAAAGTTATTGTGCCTCTGTTTAGAGGAG-TTTTTTATTTTTCAAAGTT
1 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTT-TTTTT-AAAGTT
18214890 GTTGA-GCCTCTATT
64 G-TGATGCCTCTATT
18214904 CAAATGAGCT
Statistics
Matches: 200, Mismatches: 33, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
81 33 0.17
82 83 0.41
83 84 0.42
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (82 bp):
GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTTTTTTTAAAGTTGT
GATGCCTCTATTTAGAG
Found at i:18214821 original size:123 final size:121
Alignment explanation
Indices: 18214580--18214912 Score: 373
Period size: 123 Copynumber: 2.7 Consensus size: 121
18214570 GATTGTCAAA
* * *
18214580 GAGCCTTTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAAGAGCATTTTATATTTCAAAGTTGT
1 GAGCATTTT-TTTTTTAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTAT-TTTCAAAG-TGT
* * * * *
18214645 GATGCCTCTATTTAGAGGAGCATTTTATTTTTCAAAAGTTGTGGTGTCACTGTTTAGAT
63 GATGCCTCTATTTAAAAGAGCATTTTATTTTTCAAAAGTTATGGTGCCACTGTTTAGAG
* *
18214704 GAGTATTTTTCTTTTTAAAGTTGTGGTGCCTCTATTTAGAAGAGCATTTTATTTTCCAAAGTGTG
1 GAGCATTTTT-TTTTTAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTATTTT-CAAAGTGTG
* * *
18214769 GTGTCTCTATTTAAAAGAGCA-TTTATTTTTTCAAAAGTTATGGTGCCTCTGTTTAGAG
64 ATGCCTCTATTTAAAAGAGCATTTTA-TTTTTCAAAAGTTATGGTGCCACTGTTTAGAG
* * * * **
18214827 GAGCATTTATTTTTTAAAAGTTATTGTGCCTCTGTTTAGAGGAGTTTTTTATTTTTCAAAGTTGT
1 GAGCATTT-TTTTTTTAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTA-TTTTCAAAG-TG-
* *
18214892 TGA-GCCTCTATTCAAATGAGC
62 TGATGCCTCTATTTAAAAGAGC
18214913 TTGATTTATT
Statistics
Matches: 177, Mismatches: 25, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
122 4 0.02
123 98 0.55
124 73 0.41
125 2 0.01
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (121 bp):
GAGCATTTTTTTTTTAAAGTTGTGGTGCCTCTGTTTAGAAGAGCATTTTATTTTCAAAGTGTGAT
GCCTCTATTTAAAAGAGCATTTTATTTTTCAAAAGTTATGGTGCCACTGTTTAGAG
Found at i:18215151 original size:18 final size:18
Alignment explanation
Indices: 18215130--18215173 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
18215120 TTAAAAAATG
* **
18215130 AAAAAATAATAAAAAGGA
1 AAAAAATAAGAAAAACCA
*
18215148 AAAAAATGAGAAAAACCA
1 AAAAAATAAGAAAAACCA
18215166 AAAAAATA
1 AAAAAATA
18215174 GGTGTTGAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.77, C:0.05, G:0.09, T:0.09
Consensus pattern (18 bp):
AAAAAATAAGAAAAACCA
Found at i:18215411 original size:20 final size:19
Alignment explanation
Indices: 18215367--18215411 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
18215357 ATAGTAGAGC
18215367 AATTTTAAAATTTTTAGGA
1 AATTTTAAAATTTTTAGGA
*
18215386 ATTTTTCAAAATTTTT-GGCA
1 AATTTT-AAAATTTTTAGG-A
18215406 AATTTT
1 AATTTT
18215412 TTGTGGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (19 bp):
AATTTTAAAATTTTTAGGA
Found at i:18215878 original size:15 final size:16
Alignment explanation
Indices: 18215854--18215894 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 16
18215844 TTTTTGGTAT
*
18215854 TTTATTTATTTATTTG
1 TTTATTTATTTATGTG
18215870 TTT-TTTA-TTATGTG
1 TTTATTTATTTATGTG
18215884 TTTATTTATTT
1 TTTATTTATTT
18215895 TTATGAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
15 8 0.36
16 5 0.23
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (16 bp):
TTTATTTATTTATGTG
Found at i:18215880 original size:22 final size:22
Alignment explanation
Indices: 18215855--18215896 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
18215845 TTTTGGTATT
* *
18215855 TTATTTATTTATTTGTTTTTTA
1 TTATGTATTTATTTATTTTTTA
*
18215877 TTATGTGTTTATTTATTTTT
1 TTATGTATTTATTTATTTTT
18215897 ATGAGTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (22 bp):
TTATGTATTTATTTATTTTTTA
Found at i:18216122 original size:8 final size:8
Alignment explanation
Indices: 18216106--18216140 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
18216096 ATTTATTTTC
*
18216106 AAAACAAA
1 AAAATAAA
18216114 AAAATAAAA
1 AAAAT-AAA
18216123 AAAATAAA
1 AAAATAAA
18216131 AAAATAAA
1 AAAATAAA
18216139 AA
1 AA
18216141 CTTTAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.89, C:0.03, G:0.00, T:0.09
Consensus pattern (8 bp):
AAAATAAA
Found at i:18216125 original size:9 final size:9
Alignment explanation
Indices: 18216111--18216140 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
18216101 TTTTCAAAAC
18216111 AAAAAAATA
1 AAAAAAATA
18216120 AAAAAAAT-
1 AAAAAAATA
18216128 AAAAAAATA
1 AAAAAAATA
18216137 AAAA
1 AAAA
18216141 CTTTAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:18216131 original size:17 final size:17
Alignment explanation
Indices: 18216106--18216140 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
18216096 ATTTATTTTC
18216106 AAAACAAAAAAATAAAA
1 AAAACAAAAAAATAAAA
*
18216123 AAAATAAAAAAATAAAA
1 AAAACAAAAAAATAAAA
18216140 A
1 A
18216141 CTTTAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.89, C:0.03, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAACAAAAAAATAAAA
Found at i:18216562 original size:10 final size:10
Alignment explanation
Indices: 18216547--18216582 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
18216537 ATTTTCACAA
18216547 AAAAATAAAT
1 AAAAATAAAT
18216557 AAAAATAAAT
1 AAAAATAAAT
18216567 AAAAA-ACAAT
1 AAAAATA-AAT
18216577 AAAAAT
1 AAAAAT
18216583 GATTTTCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 1 0.04
10 23 0.96
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:18217440 original size:21 final size:20
Alignment explanation
Indices: 18217394--18217441 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
18217384 TTAATTAAAA
*
18217394 TTTTATATTACCATCATAAT
1 TTTTATATTACAATCATAAT
18217414 TATTTATATTACAATAACAT-AT
1 T-TTTATATTACAAT--CATAAT
18217436 TTTTAT
1 TTTTAT
18217442 GTTTTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 17 0.71
22 3 0.12
23 3 0.12
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTTATATTACAATCATAAT
Found at i:18222170 original size:3 final size:3
Alignment explanation
Indices: 18222162--18222188 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
18222152 GGACTGATGA
18222162 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
18222189 TATTATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:18230323 original size:26 final size:26
Alignment explanation
Indices: 18230277--18230329 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18230267 TATTCAGCTA
* * *
18230277 TAATAGCACTATAGTATTGTTATAGT
1 TAATACCACTATAGTACTGTTACAGT
*
18230303 TAATACCACTATAGTCCTGTTACAGT
1 TAATACCACTATAGTACTGTTACAGT
18230329 T
1 T
18230330 TAGCAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (26 bp):
TAATACCACTATAGTACTGTTACAGT
Found at i:18239590 original size:32 final size:32
Alignment explanation
Indices: 18239548--18239609 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
18239538 AAAAATCCAT
18239548 TTCAAAGGTCAG-GTAGACTTATTCTTGAATGC
1 TTCAAAGGTCAGTG-AGACTTATTCTTGAATGC
* * *
18239580 TTCAAGGGTCATTGAGACTTGTTCTTGAAT
1 TTCAAAGGTCAGTGAGACTTATTCTTGAAT
18239610 ATTTCAAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (32 bp):
TTCAAAGGTCAGTGAGACTTATTCTTGAATGC
Found at i:18248056 original size:21 final size:21
Alignment explanation
Indices: 18248030--18248084 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
18248020 TTTAAAAAAA
18248030 GATCGATCCCCTCACAT-AGAG
1 GATCGATCCCCTCACATAAG-G
* * **
18248051 GATCGATCACCTAAGGTAAGG
1 GATCGATCCCCTCACATAAGG
18248072 GATCGATCCCCTC
1 GATCGATCCCCTC
18248085 TTAAAGGGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (21 bp):
GATCGATCCCCTCACATAAGG
Found at i:18255839 original size:18 final size:18
Alignment explanation
Indices: 18255816--18255853 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
18255806 AAAAACATTG
*
18255816 GTATGAAAATTTGATGAT
1 GTATGAAAATCTGATGAT
18255834 GTATGAAAATCTGATGAT
1 GTATGAAAATCTGATGAT
18255852 GT
1 GT
18255854 TTTGATATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (18 bp):
GTATGAAAATCTGATGAT
Found at i:18255872 original size:20 final size:20
Alignment explanation
Indices: 18255847--18255885 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
18255837 TGAAAATCTG
*
18255847 ATGATGTTTTGATATTGATA
1 ATGATGCTTTGATATTGATA
18255867 ATGATGCTTTGATATTGAT
1 ATGATGCTTTGATATTGAT
18255886 GGATATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (20 bp):
ATGATGCTTTGATATTGATA
Found at i:18256519 original size:21 final size:21
Alignment explanation
Indices: 18256495--18256565 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
18256485 TTCACATAGA
18256495 GGATCGATCACCTAAGACAAG
1 GGATCGATCACCTAAGACAAG
* * ***
18256516 GGATCGATCTCTTCTTA-AAG
1 GGATCGATCACCTAAGACAAG
18256536 GGATCGATCACCTAAGACAAG
1 GGATCGATCACCTAAGACAAG
18256557 GGATCGATC
1 GGATCGATC
18256566 TCTTCTTAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 15 0.38
21 24 0.62
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (21 bp):
GGATCGATCACCTAAGACAAG
Found at i:18256538 original size:20 final size:20
Alignment explanation
Indices: 18256513--18256585 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
18256503 CACCTAAGAC
18256513 AAGGGATCGATCTCTTCTTA
1 AAGGGATCGATCTCTTCTTA
* * ***
18256533 AAGGGATCGATCACCTAAGA
1 AAGGGATCGATCTCTTCTTA
18256553 CAAGGGATCGATCTCTTCTTA
1 -AAGGGATCGATCTCTTCTTA
18256574 AAGGGATCGATC
1 AAGGGATCGATC
18256586 GATTGTTCAA
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (20 bp):
AAGGGATCGATCTCTTCTTA
Found at i:18256547 original size:41 final size:41
Alignment explanation
Indices: 18256495--18256585 Score: 182
Period size: 41 Copynumber: 2.2 Consensus size: 41
18256485 TTCACATAGA
18256495 GGATCGATCACCTAAGACAAGGGATCGATCTCTTCTTAAAG
1 GGATCGATCACCTAAGACAAGGGATCGATCTCTTCTTAAAG
18256536 GGATCGATCACCTAAGACAAGGGATCGATCTCTTCTTAAAG
1 GGATCGATCACCTAAGACAAGGGATCGATCTCTTCTTAAAG
18256577 GGATCGATC
1 GGATCGATC
18256586 GATTGTTCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (41 bp):
GGATCGATCACCTAAGACAAGGGATCGATCTCTTCTTAAAG
Found at i:18260431 original size:178 final size:178
Alignment explanation
Indices: 18260130--18260478 Score: 504
Period size: 178 Copynumber: 2.0 Consensus size: 178
18260120 AATCTGTAAA
* * * * *
18260130 TACTTCTTCTACAGAAACTTTGTTTAAATAAAACTTGGCATTAATAAAATGTGCCTTCTTGTAGA
1 TACTTCTTCTACAGAAACTTTGTTCAAATAAAACTTAGCATCAACAAAATGTGCCTTCTTGTAAA
* * **
18260195 AAATGGCTTAGAATCTACAATAATTGCCTTTACTTAACCATTTTTACAATATTTCAAACATTGTT
66 AAATGGCTTAGAATCTACAATAATTGCCTTTACTTAACCATTTCTACAATACTTCAAACATCATT
* *
18260260 GAAAAGTTAAAGAAATTACACCATTTTGATGTGTCTATGGTCTATAAG
131 GAAAAGTCAAAGAAATTACACCATTTTGATGTATCTATGGTCTATAAG
*
18260308 TACTTCTTTTACA-AAAGCTTT-TTCCAAATAAAACTTAGCATCAACAAAATGTGCCTTCTTGTA
1 TACTTCTTCTACAGAAA-CTTTGTT-CAAATAAAACTTAGCATCAACAAAATGTGCCTTCTTGTA
* * * *
18260371 AAAAATGGCTTAGAATTTGCAATAATTGTCTTTACTTGACCATTTCTACAATACTTCAAACATCA
64 AAAAATGGCTTAGAATCTACAATAATTGCCTTTACTTAACCATTTCTACAATACTTCAAACATCA
* *
18260436 TTGAAGAGTCAAAGAAATTATACCATTTTGATGTATCTATGGT
129 TTGAAAAGTCAAAGAAATTACACCATTTTGATGTATCTATGGT
18260479 TGGCCTAACA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
177 5 0.03
178 146 0.97
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (178 bp):
TACTTCTTCTACAGAAACTTTGTTCAAATAAAACTTAGCATCAACAAAATGTGCCTTCTTGTAAA
AAATGGCTTAGAATCTACAATAATTGCCTTTACTTAACCATTTCTACAATACTTCAAACATCATT
GAAAAGTCAAAGAAATTACACCATTTTGATGTATCTATGGTCTATAAG
Found at i:18267152 original size:28 final size:28
Alignment explanation
Indices: 18267107--18267207 Score: 139
Period size: 28 Copynumber: 3.6 Consensus size: 28
18267097 TGATGAAAAA
* **
18267107 TTAGATCTGTGTGGGTGGTTTATGGAAG
1 TTAGATGTGTGTTAGTGGTTTATGGAAG
* *
18267135 TTAGATGTTTGTTAGTGGCTTATGGAAG
1 TTAGATGTGTGTTAGTGGTTTATGGAAG
*
18267163 TTAGATGTGTATTAGTGGTTTATGGAAG
1 TTAGATGTGTGTTAGTGGTTTATGGAAG
*
18267191 TTAGTTGTGTGTTAGTG
1 TTAGATGTGTGTTAGTG
18267208 ATTTTTATCT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.44
Consensus pattern (28 bp):
TTAGATGTGTGTTAGTGGTTTATGGAAG
Found at i:18271455 original size:28 final size:28
Alignment explanation
Indices: 18271415--18271520 Score: 115
Period size: 28 Copynumber: 3.8 Consensus size: 28
18271405 ATGTGTGATG
* * *
18271415 AAAAATTATATGTATGTTAGTGGTTTAT
1 AAAAGTTAGATGTGTGTTAGTGGTTTAT
* * *
18271443 AAAAGTTAAATGTTTGTTAGTGGCTTAT
1 AAAAGTTAGATGTGTGTTAGTGGTTTAT
* *
18271471 GAAAGTTAGATGTGTGTTGGTGGTTTAT
1 AAAAGTTAGATGTGTGTTAGTGGTTTAT
*
18271499 GAAAA-TTAGTTGTGTGTTAGTG
1 -AAAAGTTAGATGTGTGTTAGTG
18271521 ATTTTTGTTT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 62 0.95
29 3 0.05
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.43
Consensus pattern (28 bp):
AAAAGTTAGATGTGTGTTAGTGGTTTAT
Found at i:18273569 original size:29 final size:30
Alignment explanation
Indices: 18273528--18273600 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
18273518 CATTTTTCTT
* * *
18273528 AAATATGCTCTTATACTTTTATTGTAT-T-C
1 AAATAAGCCCTTATACTTTAATT-TATATCC
18273557 AAATAAGCCCTTATACTTTAATTTATATCC
1 AAATAAGCCCTTATACTTTAATTTATATCC
*
18273587 AAATAAGTCCTTAT
1 AAATAAGCCCTTAT
18273601 TTTATTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 3 0.08
29 21 0.55
30 14 0.37
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.44
Consensus pattern (30 bp):
AAATAAGCCCTTATACTTTAATTTATATCC
Found at i:18274054 original size:10 final size:10
Alignment explanation
Indices: 18274039--18274077 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
18274029 TATATTTGAT
18274039 TAAACAAATA
1 TAAACAAATA
18274049 TAAACAAATA
1 TAAACAAATA
* *
18274059 TAAACCATTA
1 TAAACAAATA
18274069 TAAACAAAT
1 TAAACAAAT
18274078 CATTTAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23
Consensus pattern (10 bp):
TAAACAAATA
Found at i:18274705 original size:19 final size:20
Alignment explanation
Indices: 18274671--18274711 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
18274661 ATGAAAAGAA
*
18274671 AATAATAAAATAGAAATCAT
1 AATAAAAAAATAGAAATCAT
*
18274691 AATAAAAAAAT-GAAATTAT
1 AATAAAAAAATAGAAATCAT
18274710 AA
1 AA
18274712 ATTAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (20 bp):
AATAAAAAAATAGAAATCAT
Found at i:18274743 original size:14 final size:14
Alignment explanation
Indices: 18274704--18274740 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
18274694 AAAAAAATGA
*
18274704 AATTATAAATTAAT
1 AATTATTAATTAAT
18274718 AATTATTAATTAAT
1 AATTATTAATTAAT
18274732 AAATTATTA
1 -AATTATTA
18274741 TTACAAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATTATTAATTAAT
Found at i:18274800 original size:11 final size:11
Alignment explanation
Indices: 18274786--18274810 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18274776 TAAATTAAGT
18274786 AATTATATTTA
1 AATTATATTTA
18274797 AATTATATTTA
1 AATTATATTTA
18274808 AAT
1 AAT
18274811 ATTTAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AATTATATTTA
Found at i:18274828 original size:19 final size:19
Alignment explanation
Indices: 18274790--18274829 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
18274780 TTAAGTAATT
* *
18274790 ATATTTAAATTATATTTAA
1 ATATTTAAATTAAATATAA
*
18274809 ATATTTAACTTAAATATAA
1 ATATTTAAATTAAATATAA
18274828 AT
1 AT
18274830 TAAATATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATTTAAATTAAATATAA
Found at i:18275417 original size:30 final size:31
Alignment explanation
Indices: 18275383--18275462 Score: 128
Period size: 30 Copynumber: 2.6 Consensus size: 31
18275373 AATGATGTAA
18275383 TTCAATCAATAATCAAAACCCAA-ATACAAT
1 TTCAATCAATAATCAAAACCCAAGATACAAT
*
18275413 TTCAATCAATGATCAAAA-CCAAGATACAAT
1 TTCAATCAATAATCAAAACCCAAGATACAAT
*
18275443 TTCAATCAACAATCAAAACC
1 TTCAATCAATAATCAAAACC
18275463 TAGAATTAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 4 0.09
30 40 0.89
31 1 0.02
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.23
Consensus pattern (31 bp):
TTCAATCAATAATCAAAACCCAAGATACAAT
Found at i:18277099 original size:3 final size:3
Alignment explanation
Indices: 18277091--18277116 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18277081 TCTCAATCCA
18277091 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
18277117 AAGATTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18278971 original size:15 final size:15
Alignment explanation
Indices: 18278951--18278979 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18278941 ATTTTTAATG
18278951 TATTTTTTAAAATAT
1 TATTTTTTAAAATAT
18278966 TATTTTTTAAAATA
1 TATTTTTTAAAATA
18278980 AATAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTTTAAAATAT
Found at i:18279017 original size:94 final size:91
Alignment explanation
Indices: 18278828--18279088 Score: 251
Period size: 91 Copynumber: 2.8 Consensus size: 91
18278818 ATTTTTTTCA
* * * *
18278828 ATTTTTAAATAGAATATAGATTTTTAATATATTTATCAAATATTATAATTTAAATAAATAAGTTT
1 ATTTTTAAATATATTATATATTTTTAATATATTTATAAAATATTATAATTTAAATAAATAAGTTT
*
18278893 AAAATTTTCAATATTTAACAAGTTTTTT
66 AAAATTTTCAATATTTAACAA--TATTT
* * **
18278921 ATTTTTCAAATATATTATATATTTTTAATGTATTTTTTAAAATATTATTTTTTAAAATAAATAAA
1 ATTTTT-AAATATATTATATATTTTTAATATA-TTTATAAAATATTATAATTT-AAATAAAT-AA
* *
18278986 GTTTAAAATTTT-AGGTATTTAATAA-ATTT
62 GTTTAAAATTTTCA-ATATTTAACAATATTT
* * * * * *
18279015 ATTTTTAAATATATTATGTA--TTTAATATTTTTCATCAAATAATATAATTTAAAATTAATAAAT
1 ATTTTTAAATATATTATATATTTTTAATATATTT-ATAAAATATTATAATTT-AAATAAATAAGT
18279078 TTCAAAATTTT
64 TT-AAAATTTT
18279089 ATTTTTGAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
90 8 0.06
91 35 0.25
93 19 0.14
94 30 0.21
95 16 0.11
96 9 0.06
97 23 0.16
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (91 bp):
ATTTTTAAATATATTATATATTTTTAATATATTTATAAAATATTATAATTTAAATAAATAAGTTT
AAAATTTTCAATATTTAACAATATTT
Found at i:18279036 original size:32 final size:31
Alignment explanation
Indices: 18278918--18279041 Score: 85
Period size: 31 Copynumber: 3.9 Consensus size: 31
18278908 TAACAAGTTT
* *
18278918 TTTATTTTTCAAATATATTATATATTT--TTAA
1 TTTATTTTT-AAA-ATATTATGTATTTAATAAA
* *
18278949 TGTATTTTTTAAAATATTAT-TTTTTAAAATAAA
1 TTTA-TTTTTAAAATATTATGTATTT--AATAAA
* ** * *
18278982 -TAAAGTTTAAAATTTTAGGTATTTAATAAA
1 TTTATTTTTAAAATATTATGTATTTAATAAA
18279012 TTTATTTTTAAATATATTATGTATTTAATA
1 TTTATTTTTAAA-ATATTATGTATTTAATA
18279042 TTTTTCATCA
Statistics
Matches: 70, Mismatches: 15, Indels: 15
0.70 0.15 0.15
Matches are distributed among these distances:
29 4 0.06
30 13 0.19
31 25 0.36
32 25 0.36
33 3 0.04
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (31 bp):
TTTATTTTTAAAATATTATGTATTTAATAAA
Found at i:18279075 original size:91 final size:92
Alignment explanation
Indices: 18278752--18279089 Score: 275
Period size: 97 Copynumber: 3.6 Consensus size: 92
18278742 TTAAGAAAAG
* * * *
18278752 TTTAATATATTTTATTAAATGTTATAATTCAAAATAAATAAA-TTTCAAAATGTTTTAT-TTTAA
1 TTTAATAT-TTTTATCAAATATTATAATTTAAAATAAATAAAGTTT-AAAAT-TTTAATATTTAA
* * *
18278815 -AATATTTTTTTCAATTTTT-AAATAGAATATAGATT
63 CAATA----TTT--ATTTTTCAAATATATTATATA-T
*
18278850 TTTAATATATTTATCAAATATTATAATTT-AAATAAAT-AAGTTTAAAATTTTCAATATTTAACA
1 TTTAATATTTTTATCAAATATTATAATTTAAAATAAATAAAGTTTAAAATTTT-AATATTTAACA
*
18278913 AGTTTTTTATTTTTCAAATATATTATATATT
65 A--TATTTATTTTTCAAATATATTATATA-T
* ** *
18278944 TTTAATGTATTTTT-TAAAATATTATTTTTTAAAATAAATAAAGTTTAAAATTTTAGGTATTTAA
1 TTTAA--TATTTTTATCAAATATTATAATTTAAAATAAATAAAGTTTAAAATTTTA-ATATTTAA
* *
18279008 TAA-ATTTATTTTT-AAATATATTATGTA-
63 CAATATTTATTTTTCAAATATATTATATAT
* *
18279035 TTTAATATTTTTCATCAAATAATATAATTTAAAATTAATAAA-TTTCAAAATTTTA
1 TTTAATATTTTT-ATCAAATATTATAATTTAAAATAAATAAAGTTT-AAAATTTTA
18279090 TTTTTGAATA
Statistics
Matches: 203, Mismatches: 22, Indels: 37
0.77 0.08 0.14
Matches are distributed among these distances:
89 7 0.03
90 3 0.01
91 37 0.18
93 19 0.09
94 30 0.15
95 25 0.12
96 31 0.15
97 42 0.21
98 8 0.04
99 1 0.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (92 bp):
TTTAATATTTTTATCAAATATTATAATTTAAAATAAATAAAGTTTAAAATTTTAATATTTAACAA
TATTTATTTTTCAAATATATTATATAT
Found at i:18279084 original size:16 final size:16
Alignment explanation
Indices: 18279054--18279086 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18279044 TTTCATCAAA
18279054 TAATATAATTTAAAAT
1 TAATATAATTTAAAAT
18279070 TAATA-AATTTCAAAAT
1 TAATATAATTT-AAAAT
18279086 T
1 T
18279087 TTATTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATATAATTTAAAAT
Found at i:18279147 original size:95 final size:94
Alignment explanation
Indices: 18278752--18279149 Score: 329
Period size: 95 Copynumber: 4.2 Consensus size: 94
18278742 TTAAGAAAAG
* * * *
18278752 TTTAATATATTTTATTAAATGTTATAATTCAAAATAAATAAATTTCAAAATGTTT-TATTTTAAA
1 TTTAATATATTTTATCAAATATTATAATTTAAAATAAATAAATTT-AAAAT-TTTATA-TTTAAT
*
18278816 ATATTTTTTTCAATTTTTAAATAGAATAT-AGAT-T-
63 A-ATTTTTTT--ATTTTTAAA-A-AATATAATATATA
* *
18278850 TTTAATATA-TTTATCAAATATTATAATTT-AAATAAATAAGTTTAAAATTTTCAATATTTAACA
1 TTTAATATATTTTATCAAATATTATAATTTAAAATAAATAAATTTAAAATTTT--ATATTTAATA
* * * * *
18278913 AGTTTTTTATTTTTCAAATATATTATATATT
64 ATTTTTTTATTTTTAAAAAATATAATATATA
* * * **
18278944 TTTAATGTATTTTTTAAAATATTATTTTTTAAAATAAATAAAGTTTAAAATTTTAGGTATTTAAT
1 TTTAATATATTTTATCAAATATTATAATTTAAAATAAATAAA-TTTAAAATTTTA--TATTTAAT
* * *
18279009 AA---ATTTATTTTT---AAATATATTATGTA
63 AATTTTTTTATTTTTAAAAAATATAATATATA
* * *
18279035 TTTAATAT-TTTTCATCAAATAATATAATTTAAAATTAATAAATTTCAAAATTTTATTTTTGAAT
1 TTTAATATATTTT-ATCAAATATTATAATTTAAAATAAATAAATTT-AAAATTTTATATTT-AAT
18279099 AATTTTTTTA-TTTTAAAAAATATAATATATA
63 AATTTTTTTATTTTTAAAAAATATAATATATA
* *
18279130 TTAAATATATTTGATCAAAT
1 TTTAATATATTTTATCAAAT
18279150 TTTGTTGTTT
Statistics
Matches: 244, Mismatches: 35, Indels: 45
0.75 0.11 0.14
Matches are distributed among these distances:
89 4 0.02
90 12 0.05
91 52 0.21
92 8 0.03
93 13 0.05
94 20 0.08
95 55 0.23
96 32 0.13
97 39 0.16
98 9 0.04
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (94 bp):
TTTAATATATTTTATCAAATATTATAATTTAAAATAAATAAATTTAAAATTTTATATTTAATAAT
TTTTTTATTTTTAAAAAATATAATATATA
Found at i:18281593 original size:45 final size:45
Alignment explanation
Indices: 18281529--18281618 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
18281519 ATTTAAACCT
* *
18281529 TTGGAACTAGGTTCAGAAGAACACATACACAATCTTGATTTCTGA
1 TTGGAACTAGGTTCAGAAGAAAACATAAACAATCTTGATTTCTGA
*
18281574 TTGGAACTAGGTTCAGAAGAAAACATAAATAATCTTGATTTCTGA
1 TTGGAACTAGGTTCAGAAGAAAACATAAACAATCTTGATTTCTGA
18281619 AAGTGACATA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (45 bp):
TTGGAACTAGGTTCAGAAGAAAACATAAACAATCTTGATTTCTGA
Found at i:18283431 original size:79 final size:79
Alignment explanation
Indices: 18283332--18283490 Score: 282
Period size: 79 Copynumber: 2.0 Consensus size: 79
18283322 AATTGAGCAA
** *
18283332 TCAATTGTACAATTTGACCTTCTTTGTTGTGTGTTTTCTAATTTAGAAAACCTTGAGGGGATACA
1 TCAATTGTACAATTAAACCTTCTTTGTTGTGTGTTTTCTAATTCAGAAAACCTTGAGGGGATACA
18283397 AGTAAATAAGTAAT
66 AGTAAATAAGTAAT
*
18283411 TCAATTGTACGATTAAACCTTCTTTGTTGTGTGTTTTCTAATTCAGAAAACCTTGAGGGGATACA
1 TCAATTGTACAATTAAACCTTCTTTGTTGTGTGTTTTCTAATTCAGAAAACCTTGAGGGGATACA
18283476 AGTAAATAAGTAAT
66 AGTAAATAAGTAAT
18283490 T
1 T
18283491 TAGTTGAACT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (79 bp):
TCAATTGTACAATTAAACCTTCTTTGTTGTGTGTTTTCTAATTCAGAAAACCTTGAGGGGATACA
AGTAAATAAGTAAT
Found at i:18283910 original size:19 final size:19
Alignment explanation
Indices: 18283868--18283910 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
18283858 TACTCTTCCA
18283868 TTTTTTGTTTTGTTCTTTT
1 TTTTTTGTTTTGTTCTTTT
* *
18283887 CTTTTTGTTTTG-TCTTCT
1 TTTTTTGTTTTGTTCTTTT
18283905 TTTTTT
1 TTTTTT
18283911 CCCTTTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.81
Consensus pattern (19 bp):
TTTTTTGTTTTGTTCTTTT
Found at i:18288874 original size:21 final size:19
Alignment explanation
Indices: 18288836--18288878 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
18288826 TTTTTATCAG
18288836 TTTTCTTTTCTTATTCTCCT
1 TTTTCTTTTCTTATTCT-CT
18288856 TTTTCTTTAT-TTCATTCTCT
1 TTTTCTTT-TCTT-ATTCTCT
18288876 TTT
1 TTT
18288879 GAATCAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTCTTTTCTTATTCTCT
Found at i:18291482 original size:28 final size:29
Alignment explanation
Indices: 18291440--18291500 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
18291430 TATATATGCA
* *
18291440 ATATGGGTATAATT-AT-ATTTATAAAAAT
1 ATATGGATATAATTAATAATATA-AAAAAT
*
18291468 ATATGGATATTATTAATAATATAAAAAAT
1 ATATGGATATAATTAATAATATAAAAAAT
18291497 ATAT
1 ATAT
18291501 ATACGTTAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 12 0.43
29 12 0.43
30 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (29 bp):
ATATGGATATAATTAATAATATAAAAAAT
Found at i:18297868 original size:24 final size:24
Alignment explanation
Indices: 18297841--18297904 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
18297831 ATTAAAAACC
18297841 AAAATCAAAATTAAAACTAAAATT
1 AAAATCAAAATTAAAACTAAAATT
* *
18297865 AAAACCAAAATTAAAGCTAAAATT
1 AAAATCAAAATTAAAACTAAAATT
*
18297889 AAAATTAAAATTAAAA
1 AAAATCAAAATTAAAA
18297905 TTTTTGAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.67, C:0.08, G:0.02, T:0.23
Consensus pattern (24 bp):
AAAATCAAAATTAAAACTAAAATT
Found at i:18297891 original size:6 final size:6
Alignment explanation
Indices: 18297827--18297906 Score: 79
Period size: 6 Copynumber: 13.2 Consensus size: 6
18297817 ACTCTTTGAC
* * * * * *
18297827 TAAAAT TAAAAAC CAAAAT CAAAAT TAAAAC TAAAAT TAAAAC CAAAAT
1 TAAAAT T-AAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
**
18297876 TAAAGC TAAAAT TAAAAT TAAAAT TAAAAT T
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT T
18297907 TTTGAACTTT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
6 55 0.93
7 4 0.07
ACGTcount: A:0.65, C:0.09, G:0.01, T:0.25
Consensus pattern (6 bp):
TAAAAT
Found at i:18298501 original size:83 final size:84
Alignment explanation
Indices: 18298340--18298661 Score: 319
Period size: 83 Copynumber: 3.9 Consensus size: 84
18298330 ATCATGCTTG
* * * * * *
18298340 GAGGACTTAGAGATTACGCCTCGAAGGTTTTATAAATATCGACTTTAAAACAAATTCAGCATGAA
1 GAGGACTTAGAGATTACGTCTCGAAGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGAA
*
18298405 AGATTTACAAATCTTACTCA
66 AGACTTACAAATCTT-CTCA
* *
18298425 GAGGACTTAGAGATTATGTC-CG-AGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGGA
1 GAGGACTTAGAGATTACGTCTCGAAGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGAA
** **
18298488 AGACTTATGAATCTTCTTG
66 AGACTTACAAATCTTCTCA
* * * ** * * * *
18298507 GAAGACTTAAAGATTAC-ACTCGGGGGTTTTATAAATCTCAACTCTAAAATAAATTTAGCTCGAA
1 GAGGACTTAGAGATTACGTCTCGAAGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGAA
* *
18298571 TGACTTACAAATCTTGTCCA
66 AGACTTACAAATCTTCT-CA
* * * * * * *
18298591 GAGAACTTGGAGATTACG-CTTGAAGGTCTTACAAATCTTGACTCTAAAATAGATTTAGCTTGAA
1 GAGGACTTAGAGATTACGTCTCGAAGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGAA
18298655 AGACTTA
66 AGACTTA
18298662 TGAATTTTGC
Statistics
Matches: 190, Mismatches: 43, Indels: 9
0.79 0.18 0.04
Matches are distributed among these distances:
81 1 0.01
82 18 0.09
83 95 0.50
84 58 0.31
85 18 0.09
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (84 bp):
GAGGACTTAGAGATTACGTCTCGAAGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGAA
AGACTTACAAATCTTCTCA
Found at i:18298639 original size:84 final size:84
Alignment explanation
Indices: 18298344--18298710 Score: 244
Period size: 83 Copynumber: 4.4 Consensus size: 84
18298334 TGCTTGGAGG
* * * * * * * *
18298344 ACTTAGAGATTACGCCTCGAAGGTTTTATAAATATCGACTTTAAAACAAATTCAGCAT-GAAAGA
1 ACTTAGAGATTACG-CTTGAAGGTCTTACAAATCTTGACTCTAAAATAAATTTAGC-TCGAAAGA
* * *
18298408 TTTACAAATCTTACTCAG-AGG
64 CTTACAAATCTTGC-CAGAAGA
* * * * * * *
18298429 ACTTAGAGATTATG-TCCG-AGGTCTTATAAATCTCGACTCTAAAACAAATTTAGCTTGGAAGAC
1 ACTTAGAGATTACGCT-TGAAGGTCTTACAAATCTTGACTCTAAAATAAATTTAGCTCGAAAGAC
** **
18298492 TTATGAATCTT-CTTGGAAG-
65 TTACAAATCTTGC-CAGAAGA
* * * ** * * ** *
18298511 ACTTAAAGATTACACTCGGGGGTTTTATAAATCTCAACTCTAAAATAAATTTAGCTCGAATGACT
1 ACTTAGAGATTACGCTTGAAGGTCTTACAAATCTTGACTCTAAAATAAATTTAGCTCGAAAGACT
18298576 TACAAATCTTGTCCAG-AGA
66 TACAAATCTTG-CCAGAAGA
* * *
18298595 ACTTGGAGATTACGCTTGAAGGTCTTACAAATCTTGACTCTAAAATAGATTTAGCTTGAAAGACT
1 ACTTAGAGATTACGCTTGAAGGTCTTACAAATCTTGACTCTAAAATAAATTTAGCTCGAAAGACT
** * * *
18298660 TATGAATTTTGCCTGAAGG
66 TACAAATCTTGCCAGAAGA
* * *
18298679 ACTTAGAGATTATGTTTGGAGGTCTTACAAAT
1 ACTTAGAGATTACGCTTGAAGGTCTTACAAAT
18298711 TAAACTTTGA
Statistics
Matches: 226, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
82 17 0.08
83 102 0.45
84 93 0.41
85 14 0.06
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (84 bp):
ACTTAGAGATTACGCTTGAAGGTCTTACAAATCTTGACTCTAAAATAAATTTAGCTCGAAAGACT
TACAAATCTTGCCAGAAGA
Found at i:18298649 original size:167 final size:167
Alignment explanation
Indices: 18298336--18298666 Score: 400
Period size: 166 Copynumber: 2.0 Consensus size: 167
18298326 AAAGATCATG
* * * * *
18298336 CTTGGAGGACTTAGAGATTACGCCTCGAAGGTTTTATAAATATCGACTTTAAAACAAATTCAGCA
1 CTTGGAAGACTTAAAGATTACGACTCGAAGGTTTTATAAATATCAACTCTAAAACAAATTCAGCA
* * * *
18298401 TGAAAGATTTACAAATCTTACTCAGAGGACTTAGAGATTATGTCCGAGGTCTTATAAATCTCGAC
66 TGAAAGACTTACAAATCTTACTCAGAGAACTTAGAGATTACGTCCGAGGTCTTACAAATCTCGAC
*
18298466 TCTAAAACAAATTTAGCTTGGAAGACTTATGAATCTT
131 TCTAAAACAAATTTAGCTTGAAAGACTTATGAATCTT
** * * *
18298503 CTTGGAAGACTTAAAGATTAC-ACTCGGGGGTTTTATAAATCTCAACTCTAAAATAAATTTAGC-
1 CTTGGAAGACTTAAAGATTACGACTCGAAGGTTTTATAAATATCAACTCTAAAACAAATTCAGCA
* * * *
18298566 TCGAATGACTTACAAATCTT-GTCCAGAGAACTTGGAGATTACG-CTTGAAGGTCTTACAAATCT
66 T-GAAAGACTTACAAATCTTACT-CAGAGAACTTAGAGATTACGTC-CG-AGGTCTTACAAATCT
* * *
18298629 TGACTCTAAAATAGATTTAGCTTGAAAGACTTATGAAT
127 CGACTCTAAAACAAATTTAGCTTGAAAGACTTATGAAT
18298667 TTTGCCTGAA
Statistics
Matches: 138, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
165 3 0.02
166 68 0.49
167 67 0.49
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (167 bp):
CTTGGAAGACTTAAAGATTACGACTCGAAGGTTTTATAAATATCAACTCTAAAACAAATTCAGCA
TGAAAGACTTACAAATCTTACTCAGAGAACTTAGAGATTACGTCCGAGGTCTTACAAATCTCGAC
TCTAAAACAAATTTAGCTTGAAAGACTTATGAATCTT
Found at i:18300161 original size:7 final size:7
Alignment explanation
Indices: 18300149--18300173 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18300139 ACACATGTTT
18300149 TTTCACC
1 TTTCACC
18300156 TTTCACC
1 TTTCACC
18300163 TTTCACC
1 TTTCACC
18300170 TTTC
1 TTTC
18300174 TCTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTCACC
Found at i:18300204 original size:15 final size:14
Alignment explanation
Indices: 18300179--18300215 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
18300169 CTTTCTCTTT
*
18300179 TTTTTTTTTTATTC
1 TTTTTTCTTTATTC
18300193 TTTTATTCTTTATTC
1 TTTT-TTCTTTATTC
18300208 TTTTTTCT
1 TTTTTTCT
18300216 ATTCTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTCTTTATTC
Found at i:18300220 original size:19 final size:18
Alignment explanation
Indices: 18300196--18300231 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
18300186 TTTATTCTTT
18300196 TATTCTTTATTCTTTTTTC
1 TATTCTTTATT-TTTTTTC
18300215 TATTCTTTATTTTTTTT
1 TATTCTTTATTTTTTTT
18300232 GCATGAGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (18 bp):
TATTCTTTATTTTTTTTC
Found at i:18301782 original size:3 final size:3
Alignment explanation
Indices: 18301770--18301801 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
18301760 AAAAAAAAGA
*
18301770 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18301802 CAACAACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:18301806 original size:3 final size:3
Alignment explanation
Indices: 18301800--18301837 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
18301790 TAATAATAAT
* *
18301800 AAC AAC AAC AAC AAC AAC AAC AGC AGC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
18301838 TAATAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.32, G:0.05, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:18305369 original size:19 final size:20
Alignment explanation
Indices: 18305326--18305372 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
18305316 GATTAGTATG
*
18305326 AACATAATATATACAAAAAAT
1 AACATAATATATA-AAAAAAC
*
18305347 AACATAATATAT-AAAGAAC
1 AACATAATATATAAAAAAAC
18305366 AACATAA
1 AACATAA
18305373 AAGGTTAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 12 0.50
21 12 0.50
ACGTcount: A:0.66, C:0.11, G:0.02, T:0.21
Consensus pattern (20 bp):
AACATAATATATAAAAAAAC
Found at i:18309482 original size:6 final size:6
Alignment explanation
Indices: 18309471--18309498 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
18309461 ATAAGAGTTT
18309471 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
18309499 TACATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:18310571 original size:6 final size:6
Alignment explanation
Indices: 18310530--18310597 Score: 64
Period size: 6 Copynumber: 11.2 Consensus size: 6
18310520 ACTCTTGGAC
* * * ** * *
18310530 TAAAAT TAAAAAC CAAAAT CAAAAT TAAAGC TAAAAT AAAAAC TAAAAT
1 TAAAAT T-AAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
18310579 TAAAAT TAAAAT TAAAAT T
1 TAAAAT TAAAAT TAAAAT T
18310598 TTTGGACTTT
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
6 45 0.92
7 4 0.08
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.25
Consensus pattern (6 bp):
TAAAAT
Found at i:18310572 original size:30 final size:31
Alignment explanation
Indices: 18310529--18310597 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
18310519 GACTCTTGGA
18310529 CTAAAATTAAAAACCAAAATCAAAATTAAAG
1 CTAAAATTAAAAACCAAAATCAAAATTAAAG
* * *
18310560 CTAAAA-TAAAAACTAAAATTAAAATTAAAA
1 CTAAAATTAAAAACCAAAATCAAAATTAAAG
*
18310590 TTAAAATT
1 CTAAAATT
18310598 TTTGGACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 26 0.79
31 7 0.21
ACGTcount: A:0.65, C:0.09, G:0.01, T:0.25
Consensus pattern (31 bp):
CTAAAATTAAAAACCAAAATCAAAATTAAAG
Found at i:18311128 original size:18 final size:17
Alignment explanation
Indices: 18311105--18311148 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
18311095 TGTTAAAAAT
18311105 AAAAAATAATAAAAAGAG
1 AAAAAATAA-AAAAAGAG
**
18311123 AAAAAATGAAAAAAATTG
1 AAAAAAT-AAAAAAAGAG
18311141 AAAAAATA
1 AAAAAATA
18311149 GGGGTTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 20 0.87
19 2 0.09
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (17 bp):
AAAAAATAAAAAAAGAG
Found at i:18311418 original size:12 final size:13
Alignment explanation
Indices: 18311400--18311431 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
18311390 TTTTAATAAA
18311400 AAAATTTTTTTGG
1 AAAATTTTTTTGG
18311413 -AAA-TTTTTTGG
1 AAAATTTTTTTGG
18311424 AAAATTTT
1 AAAATTTT
18311432 CAGATTCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
11 8 0.47
12 6 0.35
13 3 0.18
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (13 bp):
AAAATTTTTTTGG
Found at i:18312003 original size:19 final size:19
Alignment explanation
Indices: 18311964--18312004 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
18311954 TTTTTTAGTA
* *
18311964 TTTTATTTATTTATTTTAT
1 TTTTATTTATGTATTTAAT
*
18311983 TTTTATTTATGTGTTTAAT
1 TTTTATTTATGTATTTAAT
18312002 TTT
1 TTT
18312005 GGTATTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTTATTTATGTATTTAAT
Found at i:18315781 original size:24 final size:24
Alignment explanation
Indices: 18315744--18315791 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
18315734 AAAAGGTTTT
* *
18315744 AAAGAGAGAAAAAAAAGCAAAATG
1 AAAGAAAGAAAAAAAAGAAAAATG
*
18315768 AAAGAAAGAGAAAAAAGAAAAATG
1 AAAGAAAGAAAAAAAAGAAAAATG
18315792 CCACAAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.04
Consensus pattern (24 bp):
AAAGAAAGAAAAAAAAGAAAAATG
Found at i:18316201 original size:17 final size:16
Alignment explanation
Indices: 18316168--18316219 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
18316158 AAGAAAAGAA
18316168 AAAAAATAAAAAAATG
1 AAAAAATAAAAAAATG
*
18316184 AAAAAATAAGAAAGATG
1 AAAAAATAA-AAAAATG
* *
18316201 AAAAGAGAAAAAAA-G
1 AAAAAATAAAAAAATG
18316216 AAAA
1 AAAA
18316220 CTCAAATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 5 0.16
16 13 0.42
17 13 0.42
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (16 bp):
AAAAAATAAAAAAATG
Found at i:18316214 original size:10 final size:9
Alignment explanation
Indices: 18316153--18316219 Score: 62
Period size: 9 Copynumber: 6.9 Consensus size: 9
18316143 TGAAAGAATG
*
18316153 AAAGAAAGA
1 AAAGAAAAA
18316162 AAAGAAAAA
1 AAAGAAAAA
*
18316171 AAATAAAAA
1 AAAGAAAAA
*
18316180 AATGAAAAA
1 AAAGAAAAA
18316189 ATAAGAAAGATGA
1 A-AAGAAA-A--A
18316202 AAAGAGAAAA
1 AAAGA-AAAA
18316212 AAAGAAAA
1 AAAGAAAA
18316220 CTCAAATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
9 27 0.56
10 11 0.23
11 1 0.02
12 5 0.10
13 4 0.08
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:18317037 original size:23 final size:23
Alignment explanation
Indices: 18317006--18317049 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
18316996 GAAGCCTCTG
*
18317006 AATGGTGATCAAG-TGATGAAAAT
1 AATGATGATC-AGTTGATGAAAAT
18317029 AATGATGATCAGTTGATGAAA
1 AATGATGATCAGTTGATGAAA
18317050 CTTGTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.27
Consensus pattern (23 bp):
AATGATGATCAGTTGATGAAAAT
Found at i:18317421 original size:21 final size:22
Alignment explanation
Indices: 18317371--18317427 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
18317361 AAATCTTTTG
* *
18317371 ATGAGAATATTTGAGTTCTCAA
1 ATGAGAATCTTTGAATTCTCAA
* *
18317393 AGGAGAATCTTTGAATT-TCCA
1 ATGAGAATCTTTGAATTCTCAA
18317414 ATGAGAATCTTTGA
1 ATGAGAATCTTTGA
18317428 GGTGTGAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (22 bp):
ATGAGAATCTTTGAATTCTCAA
Found at i:18317492 original size:21 final size:21
Alignment explanation
Indices: 18317468--18317507 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18317458 ATCTTCGAAC
*
18317468 TCAAATGAGAATATTTGAGTT
1 TCAAATAAGAATATTTGAGTT
*
18317489 TCAAATAAGAATCTTTGAG
1 TCAAATAAGAATATTTGAG
18317508 GTGTGAAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.35
Consensus pattern (21 bp):
TCAAATAAGAATATTTGAGTT
Found at i:18317522 original size:79 final size:79
Alignment explanation
Indices: 18317388--18317567 Score: 263
Period size: 79 Copynumber: 2.3 Consensus size: 79
18317378 TATTTGAGTT
* * * * *
18317388 CTCAAAGGAGAATCTTTGAATTTCCAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC-AT
1 CTCAAATGAGAATCTTTGAGTTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGA-
18317452 ATGTGAATCTTCGAA
65 ATGTGAATCTTCGAA
* * *
18317467 CTCAAATGAGAATATTTGAGTTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAG
1 CTCAAATGAGAATCTTTGAGTTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAA
18317532 TGTGAATCTTCGAA
66 TGTGAATCTTCGAA
*
18317546 CTCAAATGAAAATCTTTGAGTT
1 CTCAAATGAGAATCTTTGAGTT
18317568 GTGAAATCCA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 89 0.99
80 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (79 bp):
CTCAAATGAGAATCTTTGAGTTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAA
TGTGAATCTTCGAA
Found at i:18317624 original size:58 final size:58
Alignment explanation
Indices: 18317489--18317625 Score: 211
Period size: 58 Copynumber: 2.4 Consensus size: 58
18317479 TATTTGAGTT
* * * *
18317489 TCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAGTGTGAATCTTCGAAC
1 TCAAATGAGAATCTTTGAGTTGTGAAACCCAAAATTTATCGAATGTGAATCTTCGAAC
* * *
18317547 TCAAATGAAAATCTTTGAGTTGTGAAATCCAAAATTTATCGAATGTGAATCTTTGAAC
1 TCAAATGAGAATCTTTGAGTTGTGAAACCCAAAATTTATCGAATGTGAATCTTCGAAC
18317605 TCAAATGAGAATCTTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
18317626 TCAAATGAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 71 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (58 bp):
TCAAATGAGAATCTTTGAGTTGTGAAACCCAAAATTTATCGAATGTGAATCTTCGAAC
Found at i:18317631 original size:21 final size:21
Alignment explanation
Indices: 18317588--18317644 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
18317578 AAATTTATCG
*
18317588 AATGTGAATCTTTGA-ACTCA
1 AATGAGAATCTTTGAGACTCA
**
18317608 AATGAGAATCTTTGAGTTTCA
1 AATGAGAATCTTTGAGACTCA
18317629 AATGAGAATCTTTGAG
1 AATGAGAATCTTTGAG
18317645 GTGTGAAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (21 bp):
AATGAGAATCTTTGAGACTCA
Found at i:18318122 original size:41 final size:41
Alignment explanation
Indices: 18318065--18318399 Score: 283
Period size: 41 Copynumber: 8.3 Consensus size: 41
18318055 GTCAAGAAGT
* * *
18318065 AATTTATTTTCCAAAGTTGTGATACGTCTGTTTAGGGGAGC
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
* * * * * **
18318106 AATTTATTTTTCAAAGTCGTGGTGCTTTTGTTTAGAGGATT
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
* * **
18318147 AATTTATTCTTCCAAGTTGTGATGCCTCTGTTTAAAGGAGC
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
* *
18318188 AATGTATTTTTTCAAAGTTGTAATGCCTCTGTTT-GGAGGAGC
1 AATTTA-TTTTTCAAAGTTGTGATGCCTCTGTTTAGG-GGAGC
* * *
18318230 AATTTATTTTTCAAAGTTGTGGTGCCTCTGTTT-GGAAGAGT
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGG-GGAGC
* * ** *
18318271 AATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGT
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
* * **
18318312 AATTTATTTTTGAAAATTGT-AGTGCCTCTGTTTAGATGAGC
1 AATTTATTTTTCAAAGTTGTGA-TGCCTCTGTTTAGGGGAGC
* * * *
18318353 -----ATTTTTCAAAATTGTGGTGCCTCTATTTAGAGGAGC
1 AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
18318389 -ATTTATTTTTC
1 AATTTATTTTTC
18318400 TCAACGTCGT
Statistics
Matches: 244, Mismatches: 41, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
36 31 0.13
40 7 0.03
41 171 0.70
42 35 0.14
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (41 bp):
AATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGGGGAGC
Found at i:18318297 original size:124 final size:123
Alignment explanation
Indices: 18318069--18318399 Score: 361
Period size: 124 Copynumber: 2.7 Consensus size: 123
18318059 AGAAGTAATT
* * * * * *
18318069 TATTTTCCAAAGTTGTGATACGTCTGTTTAGG-GGAGCAATTTATTTTTCAAAGTCGTGGTGCTT
1 TATTTTTCAAAGTTGTAATGCCTCTGTTT-GGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * *
18318133 TTGTTTAGAGGATTAATTTATTCTTCCAAGTTGTGATGCCTCTGTTTAAAGGAGCAATG
65 CTGTTTAGAGGAGTAATTTATTTTTCAAAGTTGTGATGCCTCTATTTAAAGGAGCAATG
18318192 TATTTTTTCAAAGTTGTAATGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
1 TA-TTTTTCAAAGTTGTAATGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * * * *
18318257 CTGTTTGGAAGAGTAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGTAATT
65 CTGTTTAGAGGAGTAATTTATTTTTCAAAGTTGTGATGCCTCTATTTAAAGGAGCAATG
* * * * * *
18318316 TATTTTTGAAAATTGTAGTGCCTCTGTTTAGATGAGC-----ATTTTTCAAAATTGTGGTGCCTC
1 TATTTTTCAAAGTTGTAATGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTC
* *
18318376 TATTTAGAGGAG-CATTTATTTTTC
66 TGTTTAGAGGAGTAATTTATTTTTC
18318400 TCAACGTCGT
Statistics
Matches: 178, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
117 11 0.06
118 31 0.17
123 34 0.19
124 102 0.57
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (123 bp):
TATTTTTCAAAGTTGTAATGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTC
TGTTTAGAGGAGTAATTTATTTTTCAAAGTTGTGATGCCTCTATTTAAAGGAGCAATG
Found at i:18318364 original size:36 final size:36
Alignment explanation
Indices: 18318276--18318392 Score: 135
Period size: 36 Copynumber: 3.1 Consensus size: 36
18318266 AGAGTAATTT
* *
18318276 ATTTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGTAATTT
1 ATTTTTCAAAATTGTGGTGCCTCTATTTAGATGAG-----C
* * *
18318317 ATTTTTGAAAATTGTAGTGCCTCTGTTTAGATGAGC
1 ATTTTTCAAAATTGTGGTGCCTCTATTTAGATGAGC
*
18318353 ATTTTTCAAAATTGTGGTGCCTCTATTTAGAGGAGC
1 ATTTTTCAAAATTGTGGTGCCTCTATTTAGATGAGC
18318389 ATTT
1 ATTT
18318393 ATTTTTCTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
36 36 0.54
41 31 0.46
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.44
Consensus pattern (36 bp):
ATTTTTCAAAATTGTGGTGCCTCTATTTAGATGAGC
Found at i:18318381 original size:77 final size:79
Alignment explanation
Indices: 18318111--18318399 Score: 253
Period size: 83 Copynumber: 3.6 Consensus size: 79
18318101 GGAGCAATTT
* * * * * * * *
18318111 ATTTTTCAAAGTCGTGGTGCTTTTGTTTAGAGGATTAATTTATTCTTCCAAGTTGT-GATGCCTC
1 ATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGA-GAATTTATTTTTCAAAATTGTAG-TGCCTC
* * *
18318175 TGTTTAAAGGAGCAATGT
64 TGTTT-GA-GAGTAATGC
** * * * *
18318193 ATTTTTTCAAAGTTGTAATGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTC
1 A-TTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAG-AATTTATTTTTCAAAATTGTAGTGCCTC
**
18318258 TGTTTGGAAGAGTAATTT
64 TGTTT-G-AGAGTAATGC
* *
18318276 ATTTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGTAATTTATTTTTGAAAATTGTAGTGCCTCT
1 ATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAG-AATTTATTTTTCAAAATTGTAGTGCCTCT
*
18318341 GTTT-AGA-TGA-GC
65 GTTTGAGAGTAATGC
* *
18318353 ATTTTTCAAAATTGTGGTGCCTCTATTTAGAGGAGCATTTATTTTTC
1 ATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGAATTTATTTTTC
18318400 TCAACGTCGT
Statistics
Matches: 174, Mismatches: 29, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
76 10 0.06
77 33 0.19
78 2 0.01
79 3 0.02
82 60 0.34
83 64 0.37
84 2 0.01
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (79 bp):
ATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGAATTTATTTTTCAAAATTGTAGTGCCTCTG
TTTGAGAGTAATGC
Found at i:18318826 original size:27 final size:28
Alignment explanation
Indices: 18318777--18318838 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
18318767 TTGAGTTTAT
* *
18318777 AAAAAAAGAACACACAAGAAGTAGAGAG
1 AAAAAAAAAACACACAAGAAGTAGAAAG
*
18318805 AAAAAAAAAACAC-C-AGAGAGTAGAAAT
1 AAAAAAAAAACACACAAGA-AGTAGAAAG
18318832 AAAAAAA
1 AAAAAAA
18318839 CAAAGAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 3 0.10
27 15 0.50
28 12 0.40
ACGTcount: A:0.69, C:0.10, G:0.16, T:0.05
Consensus pattern (28 bp):
AAAAAAAAAACACACAAGAAGTAGAAAG
Found at i:18323490 original size:23 final size:23
Alignment explanation
Indices: 18323460--18323503 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
18323450 GAACCTTCTG
18323460 AATGATGATCAAG-TGATGAAAAT
1 AATGATGATC-AGTTGATGAAAAT
18323483 AATGATGATCAGTTGATGAAA
1 AATGATGATCAGTTGATGAAA
18323504 CTTGTTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (23 bp):
AATGATGATCAGTTGATGAAAAT
Found at i:18323821 original size:21 final size:21
Alignment explanation
Indices: 18323795--18323836 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18323785 ATATTTAAGT
18323795 TTTCAAAGGAAAATCTTTGAA
1 TTTCAAAGGAAAATCTTTGAA
* *
18323816 TTTCAAATGAGAATCTTTGAA
1 TTTCAAAGGAAAATCTTTGAA
18323837 GTGTGAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (21 bp):
TTTCAAAGGAAAATCTTTGAA
Found at i:18323886 original size:19 final size:21
Alignment explanation
Indices: 18323859--18323913 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
18323849 AAATTTATCG
* *
18323859 AATGTGAATCTTTGAA-CT-A
1 AATGAGAATCTTTAAATCTAA
*
18323878 AATGAGAATCTTTAAATTTAA
1 AATGAGAATCTTTAAATCTAA
18323899 AATGAGAATCTTTAA
1 AATGAGAATCTTTAA
18323914 GGTGTGAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 14 0.45
20 1 0.03
21 16 0.52
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (21 bp):
AATGAGAATCTTTAAATCTAA
Found at i:18323970 original size:20 final size:21
Alignment explanation
Indices: 18323942--18323993 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
18323932 GGTCGAGTGT
18323942 GAATCTTTGA-ACTCAAATGA
1 GAATCTTTGAGACTCAAATGA
* **
18323962 GAATATTTGAGTTTCAAATGA
1 GAATCTTTGAGACTCAAATGA
18323983 GAATCTTTGAG
1 GAATCTTTGAG
18323994 GTATGAAACC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
GAATCTTTGAGACTCAAATGA
Found at i:18323980 original size:21 final size:21
Alignment explanation
Indices: 18323954--18323993 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
18323944 ATCTTTGAAC
18323954 TCAAATGAGAATATTTGAGTT
1 TCAAATGAGAATATTTGAGTT
*
18323975 TCAAATGAGAATCTTTGAG
1 TCAAATGAGAATATTTGAG
18323994 GTATGAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (21 bp):
TCAAATGAGAATATTTGAGTT
Found at i:18324001 original size:79 final size:79
Alignment explanation
Indices: 18323810--18324083 Score: 379
Period size: 79 Copynumber: 3.5 Consensus size: 79
18323800 AAGGAAAATC
*
18323810 TTTGAATTTCAAATGAGAATCTTTGAAGTGTGAAACCCAAAATTTATCGAATGTGAATCTTTGAA
1 TTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTGAATCTTTGAA
*
18323875 CT-AAATGAGAATC
66 CTCAAATGAGAATA
* * * * ** *
18323888 TTTAAATTTAAAATGAGAATCTTTAAGGTGTGAAACTCAAAATTGGTCGAGTGTGAATCTTTGAA
1 TTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTGAATCTTTGAA
18323953 CTCAAATGAGAATA
66 CTCAAATGAGAATA
* * * *
18323967 TTTGAGTTTCAAATGAGAATCTTTGAGGTATGAAACCCAAAATTTATCAAATGTGAATCTTCGAA
1 TTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTGAATCTTTGAA
*
18324032 CTCAAATGAGAACA
66 CTCAAATGAGAATA
* * * *
18324046 TTTGAGTTTCAAATAAGGATATTTGAGGTGTGAAACCC
1 TTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCC
18324084 TAATGTTCAG
Statistics
Matches: 170, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
78 59 0.35
79 111 0.65
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.32
Consensus pattern (79 bp):
TTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTGAATCTTTGAA
CTCAAATGAGAATA
Found at i:18324567 original size:42 final size:41
Alignment explanation
Indices: 18324493--18324784 Score: 197
Period size: 41 Copynumber: 7.2 Consensus size: 41
18324483 GTCAAGAAGT
* * *
18324493 AATTTATTTTTCAAAGTTATGGTGCCTTTGTTTAGAGGATC
1 AATTTATTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
*
18324534 AATTTATTCTTCCAAAATTATGGT-TCTTCTGTTTAGAGGAGC
1 AATTTATT-TTCCAAAATTATGGTGCCTT-TGTTTAGAGGAGC
* * * * * * * *
18324576 AACTTATTTTTTCAAAGTTGT-GTGCCTCTATTGAAAGGAGC
1 AATTTA-TTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
* * * *
18324617 AATTTATTTTTCAAAGTTGA-GGTGCCTCTGTTTGGAGGAGC
1 AATTTATTTTCCAAAATT-ATGGTGCCTTTGTTTAGAGGAGC
* * * * *
18324658 AATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGATGAGC
1 AATTTATTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
* ** * * *
18324699 AACTTATTTTTTAAAATTATAGTGCCTCTGTTTAGATGAGC
1 AATTTATTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
* * * * *
18324740 -A--T-TTTT-CAAAGTTGTGGTGCCTCTATTTAGAGAAGC
1 AATTTATTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
18324776 -ATTTATTTT
1 AATTTATTTT
18324785 TCTTAAAGTC
Statistics
Matches: 207, Mismatches: 34, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
36 24 0.12
37 4 0.02
38 2 0.01
39 4 0.02
40 13 0.06
41 117 0.57
42 41 0.20
43 2 0.01
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (41 bp):
AATTTATTTTCCAAAATTATGGTGCCTTTGTTTAGAGGAGC
Found at i:18324667 original size:82 final size:82
Alignment explanation
Indices: 18324493--18324786 Score: 334
Period size: 82 Copynumber: 3.6 Consensus size: 82
18324483 GTCAAGAAGT
* * * * *
18324493 AATTTATTTTTCAAAGTTATGGTGCCTTTGTTTAGAGGATCAATTTATTCTTCCAAAATTATGGT
1 AATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATT-TTTCAAAATTATGGT
* *
18324558 TCTTCTGTTTAGAGGAGC
65 GCCTCTGTTTAGAGGAGC
* * * *
18324576 AACTTATTTTTTCAAAGTTGT-GTGCCTCTATTGAAAGGAGCAATTTATTTTTCAAAGTTGA-GG
1 AATTTA-TTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAATT-ATGG
*
18324639 TGCCTCTGTTTGGAGGAGC
64 TGCCTCTGTTTAGAGGAGC
* * * * *
18324658 AATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGATGAGCAACTTATTTTTTAAAATTATAGTG
1 AATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAATTATGGTG
*
18324723 CCTCTGTTTAGATGAGC
66 CCTCTGTTTAGAGGAGC
*
18324740 -----ATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGC-ATTTATTTTTC
1 AATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTC
18324787 TTAAAGTCGT
Statistics
Matches: 179, Mismatches: 28, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
76 9 0.05
77 33 0.18
81 15 0.08
82 80 0.45
83 29 0.16
84 13 0.07
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (82 bp):
AATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAATTATGGTG
CCTCTGTTTAGAGGAGC
Found at i:18330294 original size:24 final size:24
Alignment explanation
Indices: 18330266--18330313 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
18330256 AAAAGGTTTT
* *
18330266 AAAGAGAGAAAGAAAAGCAAAATG
1 AAAGAAAGAAAGAAAAGAAAAATG
*
18330290 AAAGAAAGAGAGAAAAGAAAAATG
1 AAAGAAAGAAAGAAAAGAAAAATG
18330314 CCACAAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.69, C:0.02, G:0.25, T:0.04
Consensus pattern (24 bp):
AAAGAAAGAAAGAAAAGAAAAATG
Found at i:18330720 original size:19 final size:19
Alignment explanation
Indices: 18330679--18330722 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
18330669 AAGAATGAAA
*
18330679 GAAAGAAAAGAAAAAAAAT
1 GAAAGAAAAGAAAAAAAAG
*
18330698 GAAA-AAAATGAAAAAATAG
1 GAAAGAAAA-GAAAAAAAAG
18330717 GAAAGA
1 GAAAGA
18330723 TAAAAGGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 16 0.76
20 1 0.05
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (19 bp):
GAAAGAAAAGAAAAAAAAG
Found at i:18331561 original size:23 final size:23
Alignment explanation
Indices: 18331535--18331578 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
18331525 GAAGCCTTTG
*
18331535 AATGGTGATCAAG-TGATGAAAAT
1 AATGATGATC-AGCTGATGAAAAT
18331558 AATGATGATCAGCTGATGAAA
1 AATGATGATCAGCTGATGAAA
18331579 CTTGTTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.25
Consensus pattern (23 bp):
AATGATGATCAGCTGATGAAAAT
Done.