Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33012953
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 65000 characters in sequence are not A, C, G, or T
File 99 of 160
Found at i:18724743 original size:167 final size:167
Alignment explanation
Indices: 18724461--18724786 Score: 564
Period size: 167 Copynumber: 2.0 Consensus size: 167
18724451 TTTTTTAAGG
* * *
18724461 AAAATTTTATTTTTATTTTGTCAAATAATAAATATTTTTTTAATAAATAAGGTTTTGCTACATGT
1 AAAAATTTATTTTTAATTTATCAAATAATAAATATTTTTTTAATAAATAAGGTTTTGCTACATGT
* *
18724526 CTAACATAGATCAAGAATGATACGATATTTATTAGATCACATGGTACTTTATATGTCATAAATTT
66 CTAACATAGATCAAAAATGATACGACATTTATTAGATCACATGGTACTTTATATGTCATAAATTT
18724591 ATTTTTTAATATCTTAATTAAAAGATTAAAATTTTATT
131 ATTTTTT-ATATCTTAATTAAAAGATTAAAATTTTATT
18724629 AAAAATTTATTTTTAATTTATCAAATAATAAATA-TTTTTTAATAAATAAGGTTTTGCTACATGT
1 AAAAATTTATTTTTAATTTATCAAATAATAAATATTTTTTTAATAAATAAGGTTTTGCTACATGT
* *
18724693 CTACCATAGATCAAAAATGATATGACATTTATTAGATCACATGGTACTTTATATGTCATAAATTT
66 CTAACATAGATCAAAAATGATACGACATTTATTAGATCACATGGTACTTTATATGTCATAAATTT
*
18724758 ATTTTTTATATGTTAATTAAAAGATTAAA
131 ATTTTTTATATCTTAATTAAAAGATTAAA
18724787 TTAATAATAT
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
166 21 0.14
167 98 0.65
168 31 0.21
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.44
Consensus pattern (167 bp):
AAAAATTTATTTTTAATTTATCAAATAATAAATATTTTTTTAATAAATAAGGTTTTGCTACATGT
CTAACATAGATCAAAAATGATACGACATTTATTAGATCACATGGTACTTTATATGTCATAAATTT
ATTTTTTATATCTTAATTAAAAGATTAAAATTTTATT
Found at i:18725794 original size:18 final size:19
Alignment explanation
Indices: 18725744--18725796 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
18725734 GTTTTACTGT
18725744 AATTTA-TATAA--ATTAA
1 AATTTATTATAATTATTAA
*
18725760 AATTTTTTATTAATTATTAA
1 AATTTATTA-TAATTATTAA
18725780 AATTTATTA-AATTATTA
1 AATTTATTATAATTATTA
18725797 CCGATGTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 11 0.35
20 13 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTTATTATAATTATTAA
Found at i:18735206 original size:36 final size:36
Alignment explanation
Indices: 18735159--18735231 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
18735149 GCAACCATAA
18735159 AAGTTTGTGGGGAGAGGACTACACAATGTGAAAGAC
1 AAGTTTGTGGGGAGAGGACTACACAATGTGAAAGAC
18735195 AAGTTTGTGGGGAGAGGACTACACAATGTGAAAGAC
1 AAGTTTGTGGGGAGAGGACTACACAATGTGAAAGAC
18735231 A
1 A
18735232 GAGAAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.33, T:0.19
Consensus pattern (36 bp):
AAGTTTGTGGGGAGAGGACTACACAATGTGAAAGAC
Found at i:18737137 original size:20 final size:21
Alignment explanation
Indices: 18737096--18737141 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
18737086 CCTGAAATTA
18737096 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
18737117 ATAAAATATTATTTTTT-AAT
1 ATAAAATATTATTTTTTAAAT
18737137 ATAAA
1 ATAAA
18737142 TATAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:18737150 original size:20 final size:20
Alignment explanation
Indices: 18737093--18737150 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
18737083 TAACCTGAAA
18737093 TTAATA-AAATAT-TATTTT
1 TTAATATAAATATATATTTT
18737111 TTAAATATAAA-ATATTATTTT
1 TT-AATATAAATATA-TATTTT
*
18737132 TTAATATAAATATAAATTT
1 TTAATATAAATATATATTT
18737151 AAATAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 15 0.44
21 11 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTAATATAAATATATATTTT
Found at i:18737158 original size:16 final size:16
Alignment explanation
Indices: 18737131--18737176 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
18737121 AATATTATTT
18737131 TTTAATATAAATATAAA
1 TTTAATATAAATA-AAA
18737148 TTTAA-ATAAATAAAA
1 TTTAATATAAATAAAA
*
18737163 -TTAAT-TAATTAAAA
1 TTTAATATAAATAAAA
18737177 AATAAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 12 0.44
15 3 0.11
16 7 0.26
17 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TTTAATATAAATAAAA
Found at i:18737166 original size:14 final size:15
Alignment explanation
Indices: 18737131--18737164 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
18737121 AATATTATTT
18737131 TTTAATATAAATATAAA
1 TTTAA-ATAAATA-AAA
18737148 TTTAAATAAATAAAA
1 TTTAAATAAATAAAA
18737163 TT
1 TT
18737165 AATTAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 7 0.41
17 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAATAAATAAAA
Found at i:18741149 original size:12 final size:12
Alignment explanation
Indices: 18741134--18741167 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
18741124 TTATATAAAA
18741134 AATTATTTATTT
1 AATTATTTATTT
18741146 AATTATTTATTT
1 AATTATTTATTT
*
18741158 AAATATTTAT
1 AATTATTTAT
18741168 ATTTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTATTTATTT
Found at i:18741189 original size:21 final size:21
Alignment explanation
Indices: 18741159--18741209 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
18741149 TATTTATTTA
18741159 AATA-TTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
*
18741179 AATATTTTATATTTTAAAAAT
1 AATATTTTATATTTAAAAAAT
18741200 AATATTTTAT
1 AATATTTTAT
18741210 TAATTTCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:18751388 original size:24 final size:26
Alignment explanation
Indices: 18751367--18751416 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18751357 CTTTTTTTCT
18751367 TTTTA-TT-TTTTGCCTTGATTTTTA
1 TTTTATTTATTTTGCCTTGATTTTTA
*
18751391 TTTTATTTATTTTGCGTTGATTTTTA
1 TTTTATTTATTTTGCCTTGATTTTTA
18751417 GGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.14, C:0.06, G:0.10, T:0.70
Consensus pattern (26 bp):
TTTTATTTATTTTGCCTTGATTTTTA
Found at i:18751463 original size:18 final size:18
Alignment explanation
Indices: 18751440--18751480 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18751430 TTTCTTATGA
18751440 TATTATTGTTATTAT-TAT
1 TATTATT-TTATTATATAT
*
18751458 TATTATTTTTTTATATAT
1 TATTATTTTATTATATAT
18751476 TATTA
1 TATTA
18751481 CTAGTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TATTATTTTATTATATAT
Found at i:18751476 original size:15 final size:15
Alignment explanation
Indices: 18751426--18751479 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 15
18751416 AGGTTTTTTT
*
18751426 TTATTTTCTTATGATA
1 TTATTTTATTAT-ATA
18751442 TTATTGTTATTATTATTA
1 TTATT-TTATTA-TA-TA
*
18751460 TTATTTTTTTATATA
1 TTATTTTATTATATA
18751475 TTATT
1 TTATT
18751480 ACTAGTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 7 0.21
16 7 0.21
17 11 0.33
18 8 0.24
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (15 bp):
TTATTTTATTATATA
Found at i:18751524 original size:6 final size:5
Alignment explanation
Indices: 18751500--18751540 Score: 57
Period size: 5 Copynumber: 8.0 Consensus size: 5
18751490 ATTCTTTTAG
18751500 AAAT- AAATA AAATA AAATAA AAATA AAACTA AAATA AAATA
1 AAATA AAATA AAATA AAAT-A AAATA AAA-TA AAATA AAATA
18751541 TGGACCTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.12
5 20 0.59
6 10 0.29
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:18751524 original size:11 final size:10
Alignment explanation
Indices: 18751500--18751540 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
18751490 ATTCTTTTAG
18751500 AAAT-AAATA
1 AAATAAAATA
18751509 AAATAAAATAA
1 AAATAAAAT-A
18751520 AAATAAAACTA
1 AAATAAAA-TA
18751531 AAATAAAATA
1 AAATAAAATA
18751541 TGGACCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 4 0.14
10 6 0.21
11 18 0.62
12 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (10 bp):
AAATAAAATA
Found at i:18751535 original size:22 final size:20
Alignment explanation
Indices: 18751500--18751540 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
18751490 ATTCTTTTAG
18751500 AAATAAATAAAATAAAATAA
1 AAATAAATAAAATAAAATAA
18751520 AAATAAAACTAAAATAAAATA
1 AAAT-AAA-TAAAATAAAATA
18751541 TGGACCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATAAATAAAATAAAATAA
Found at i:18751711 original size:18 final size:18
Alignment explanation
Indices: 18751684--18751720 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18751674 TAATAATAAT
*
18751684 AATAATATAAAAAAGATA
1 AATAAAATAAAAAAGATA
*
18751702 AATAAAATAAAAATGATA
1 AATAAAATAAAAAAGATA
18751720 A
1 A
18751721 GTTATTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (18 bp):
AATAAAATAAAAAAGATA
Found at i:18752058 original size:10 final size:10
Alignment explanation
Indices: 18752045--18752110 Score: 69
Period size: 10 Copynumber: 6.3 Consensus size: 10
18752035 AAATTTTTTT
18752045 AAATAATAAA
1 AAATAATAAA
18752055 AAATAATAAA
1 AAATAATAAA
*
18752065 AAATAGTAAA
1 AAATAATAAA
* *
18752075 TAATAACAACA
1 AAATAATAA-A
18752086 AAATAATTAAA
1 AAATAA-TAAA
*
18752097 AAATCATAATA
1 AAATAATAA-A
18752108 AAA
1 AAA
18752111 ATTAAGTAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
10 28 0.61
11 16 0.35
12 2 0.04
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.21
Consensus pattern (10 bp):
AAATAATAAA
Found at i:18754293 original size:19 final size:19
Alignment explanation
Indices: 18754266--18754310 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
18754256 AGCGTTTTGA
* *
18754266 TTTAGGGTTTGGTTTA-AGG
1 TTTAAGGTTTGCTTTAGA-G
18754285 TTTAAGGTTTGCTTTAGAG
1 TTTAAGGTTTGCTTTAGAG
18754304 TTTAAGG
1 TTTAAGG
18754311 GTTTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (19 bp):
TTTAAGGTTTGCTTTAGAG
Found at i:18754320 original size:20 final size:19
Alignment explanation
Indices: 18754284--18754326 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
18754274 TTGGTTTAAG
*
18754284 GTTTAAGGTTTGCTTTAGA
1 GTTTAAGGTTTACTTTAGA
* *
18754303 GTTTAAGGGTTTATTTTAGG
1 GTTTAA-GGTTTACTTTAGA
18754323 GTTT
1 GTTT
18754327 GATTTAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (19 bp):
GTTTAAGGTTTACTTTAGA
Found at i:18754478 original size:19 final size:20
Alignment explanation
Indices: 18754444--18754490 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
18754434 TAGGTGGCTT
*
18754444 AGGTTTAGGATTTAGGGTTTG
1 AGGTTT-GGATTTAGGGTTTA
18754465 AGGTTTGG-TTTAGGGTTTA
1 AGGTTTGGATTTAGGGTTTA
18754484 AGGTTTG
1 AGGTTTG
18754491 TATAGGGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 2 0.08
21 6 0.24
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (20 bp):
AGGTTTGGATTTAGGGTTTA
Found at i:18755561 original size:13 final size:13
Alignment explanation
Indices: 18755543--18755571 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18755533 AATTTTGACC
18755543 TTTTTTT-TCCTT
1 TTTTTTTCTCCTT
18755555 TTTTTTTCTCCTT
1 TTTTTTTCTCCTT
18755568 TTTT
1 TTTT
18755572 ATGCCACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTCTCCTT
Found at i:18756182 original size:144 final size:142
Alignment explanation
Indices: 18755950--18756293 Score: 342
Period size: 144 Copynumber: 2.4 Consensus size: 142
18755940 TCAACACCAT
* * *
18755950 GAAGGTCAAATTATAAAAATACCCCT-AAAGGAAATTTTAGTAATTTCACACCTTTCAAAGTGCG
1 GAAGGTCAATTTATAAAAATA-CCCTAAAAGG-AATTTTAGTAATTTCACACC-TTCTAAGTACG
* * *
18756014 ATCAAGGTTTCTATTGCACTAAAAATCATAAAATAATTTCAAAACATGA-CTTCGAGCGTTTCGT
63 ATCAAGGTTTCTATT-CACTAAAAATCATAAAATAATATCAAAACATGATC-TAGAGC-TTTCCT
18756078 -AC-AAAATCAACCTCGA
125 CACAAAAATCAACCTCGA
* * * *
18756094 GAAGGTCAATTTACAAAAATACCCTTAAAAGGTATTTTTGTAATTTCACACCTTCTAAGATATGA
1 GAAGGTCAATTTATAAAAATACCC-TAAAAGGAATTTTAGTAATTTCACACCTTCTAAG-TACGA
** *
18756159 TCAAGGTTTCTAACTT-A-TCAAAAATCATCGAATAATATCAAATCATGATCTAGAGCTTTCCTC
64 TCAAGGTTTCT-A-TTCACT-AAAAATCATAAAATAATATCAAAACATGATCTAGAGCTTTCCTC
*
18756222 ACAAAAATCAACCTTGA
126 ACAAAAATCAACCTCGA
* * * * ** * *
18756239 TAAAGTTAATTTATAAAAACATTCTAAAA-GCATTTTAGTAATTTTACACCTTCTA
1 GAAGGTCAATTTATAAAAATACCCTAAAAGGAATTTTAGTAATTTCACACCTTCTA
18756294 TGGTGCAATC
Statistics
Matches: 167, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
143 38 0.23
144 90 0.54
145 37 0.22
146 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (142 bp):
GAAGGTCAATTTATAAAAATACCCTAAAAGGAATTTTAGTAATTTCACACCTTCTAAGTACGATC
AAGGTTTCTATTCACTAAAAATCATAAAATAATATCAAAACATGATCTAGAGCTTTCCTCACAAA
AATCAACCTCGA
Found at i:18756869 original size:18 final size:19
Alignment explanation
Indices: 18756838--18756875 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
18756828 GCTTAAAAAG
18756838 TTTTTGCTTGTTGTTTATTT
1 TTTTTGCTTGTTGTTT-TTT
18756858 TTTTTG-TT-TTGTTTTTT
1 TTTTTGCTTGTTGTTTTTT
18756875 T
1 T
18756876 ATAGGCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 6 0.33
19 2 0.11
20 6 0.33
ACGTcount: A:0.03, C:0.03, G:0.13, T:0.82
Consensus pattern (19 bp):
TTTTTGCTTGTTGTTTTTT
Found at i:18757146 original size:17 final size:17
Alignment explanation
Indices: 18757124--18757156 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18757114 AATGAGGCTA
18757124 AGAAACTTTTAAAATCG
1 AGAAACTTTTAAAATCG
18757141 AGAAACTTTTAAAATC
1 AGAAACTTTTAAAATC
18757157 CCAATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (17 bp):
AGAAACTTTTAAAATCG
Found at i:18757281 original size:49 final size:48
Alignment explanation
Indices: 18757228--18757403 Score: 167
Period size: 49 Copynumber: 3.6 Consensus size: 48
18757218 AGTTCCTTTA
* * *
18757228 AAAAAACCTTAAAATTTTCAGCTTTGAAAAACTCCTCTAAAGAGAGGCT
1 AAAAAACTTTAAAATTTTCA-TTTTGAAAAACTCCTCTAAAGAAAGGCT
* * *
18757277 AAAAAACTTTTAAAATTTT-ATTTTGGAAAACTCCTTTAAAGAAAGGGT
1 AAAAAAC-TTTAAAATTTTCATTTTGAAAAACTCCTCTAAAGAAAGGCT
* * *
18757325 AGAAAACTTTAAAAATCTCAATTTTGAAAAACTCCTCTAAAGATAA-GCT
1 AAAAAACTTTAAAATTTTC-ATTTTGAAAAACTCCTCTAAAGA-AAGGCT
** * * *
18757374 AGGAAATTTTAAAAATCTCAATTTTGAAAA
1 AAAAAACTTTAAAATTTTC-ATTTTGAAAA
18757404 CCTCATTTAA
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 9 0.08
48 29 0.27
49 59 0.54
50 12 0.11
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (48 bp):
AAAAAACTTTAAAATTTTCATTTTGAAAAACTCCTCTAAAGAAAGGCT
Found at i:18757351 original size:97 final size:97
Alignment explanation
Indices: 18757250--18757451 Score: 236
Period size: 97 Copynumber: 2.1 Consensus size: 97
18757240 AATTTTCAGC
* ** *
18757250 TTTGAAAAACTCCTCTAAAGAGAGGCTAAAAAACTTTT-AAAAT-TTTATTTTGGAAAA-CTCCT
1 TTTGAAAAACTCCTCTAAAGAGAAGCTAAAAAA-TTTTAAAAATCTCAATTTT-GAAAACCTCAT
18757312 TTAAAGAAAGGGT--AGAAAACTTTAAAAATCTCAAT
64 TTAAAG-AAGGGTGAAG-AAAC-TTAAAAATCTCAAT
* **
18757347 TTTGAAAAACTCCTCTAAAGATAAGCTAGGAAATTTTAAAAATCTCAATTTTGAAAACCTCATTT
1 TTTGAAAAACTCCTCTAAAGAGAAGCTAAAAAATTTTAAAAATCTCAATTTTGAAAACCTCATTT
* *
18757412 AAAGAGGGGTGAAGAAACTTCAAAATCTCAAT
66 AAAGAAGGGTGAAGAAACTTAAAAATCTCAAT
18757444 TTT-AAAAA
1 TTTGAAAAA
18757452 GCTAGGTTAT
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
96 9 0.10
97 60 0.66
98 20 0.22
99 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (97 bp):
TTTGAAAAACTCCTCTAAAGAGAAGCTAAAAAATTTTAAAAATCTCAATTTTGAAAACCTCATTT
AAAGAAGGGTGAAGAAACTTAAAAATCTCAAT
Found at i:18757415 original size:49 final size:48
Alignment explanation
Indices: 18757250--18757416 Score: 176
Period size: 49 Copynumber: 3.4 Consensus size: 48
18757240 AATTTTCAGC
* * * * **
18757250 TTTGAAAAACTCCTCTAAAGAGAGGCTAAAAAACTTTTAAAAT-TTTAT
1 TTTG-AAAACTCCTTTAAAGAAAGGCTAGAAAACTTTAAAAATCTCAAT
*
18757298 TTTGGAAAACTCCTTTAAAGAAAGGGTAGAAAACTTTAAAAATCTCAAT
1 TTT-GAAAACTCCTTTAAAGAAAGGCTAGAAAACTTTAAAAATCTCAAT
* * *
18757347 TTTGAAAAACTCCTCTAAAGATAA-GCTAGGAAATTTTAAAAATCTCAAT
1 TTTG-AAAACTCCTTTAAAGA-AAGGCTAGAAAACTTTAAAAATCTCAAT
*
18757396 TTTGAAAACCTCATTTAAAGA
1 TTTGAAAA-CTCCTTTAAAGA
18757417 GGGGTGAAGA
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
48 41 0.41
49 58 0.57
50 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (48 bp):
TTTGAAAACTCCTTTAAAGAAAGGCTAGAAAACTTTAAAAATCTCAAT
Found at i:18758347 original size:23 final size:23
Alignment explanation
Indices: 18758313--18758397 Score: 88
Period size: 22 Copynumber: 3.8 Consensus size: 23
18758303 TATTTTTTCG
* *
18758313 TCTTTTT-TACTTTTTTTCCTAT
1 TCTTTTTCCACTTTTTTTCCTTT
*
18758335 TCTTTTTCCACTTGTTTTCCTTT
1 TCTTTTTCCACTTTTTTTCCTTT
*
18758358 TCCTTTTCC-CTTTTTTT-CTTT
1 TCTTTTTCCACTTTTTTTCCTTT
*
18758379 TC-TTTTCTCTCTTTTTTTC
1 TCTTTTTC-CACTTTTTTTC
18758398 AAACTCTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
20 5 0.09
21 7 0.13
22 22 0.41
23 20 0.37
ACGTcount: A:0.04, C:0.25, G:0.01, T:0.71
Consensus pattern (23 bp):
TCTTTTTCCACTTTTTTTCCTTT
Found at i:18758393 original size:21 final size:21
Alignment explanation
Indices: 18758322--18758397 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 21
18758312 GTCTTTTTTA
* *
18758322 CTTTTTTTCCTATTCTTTTTCC
1 CTTTTTTT-CTTTTCCTTTTCC
*
18758344 ACTTGTTTTCCTTTTCCTTTTCC
1 -CTT-TTTTTCTTTTCCTTTTCC
18758367 CTTTTTTTCTTTT-CTTTTCTC
1 CTTTTTTTCTTTTCCTTTTC-C
18758388 TCTTTTTTTC
1 -CTTTTTTTC
18758398 AAACTCTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 6 0.13
21 10 0.22
22 12 0.26
23 14 0.30
24 4 0.09
ACGTcount: A:0.03, C:0.26, G:0.01, T:0.70
Consensus pattern (21 bp):
CTTTTTTTCTTTTCCTTTTCC
Found at i:18760443 original size:28 final size:24
Alignment explanation
Indices: 18760405--18760486 Score: 78
Period size: 24 Copynumber: 3.2 Consensus size: 24
18760395 ATCATTCATA
18760405 TCTTTTC--CTTTTCATTTTCGTTTT
1 TCTTTTCTTCTTTTC-TTTT-GTTTT
18760429 TCTTTTCTCCTCTTTTCTTTTGTTCTTT
1 TCTTTTCT--TCTTTTCTTTTG-T-TTT
* *
18760457 TCTTTTGTTCTTTTCTTTTTTTTT
1 TCTTTTCTTCTTTTCTTTTGTTTT
18760481 TCTTTT
1 TCTTTT
18760487 TTTTTCATTC
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
24 16 0.32
25 1 0.02
26 12 0.24
27 5 0.10
28 16 0.32
ACGTcount: A:0.01, C:0.20, G:0.04, T:0.76
Consensus pattern (24 bp):
TCTTTTCTTCTTTTCTTTTGTTTT
Found at i:18760460 original size:18 final size:17
Alignment explanation
Indices: 18760407--18760492 Score: 77
Period size: 18 Copynumber: 4.9 Consensus size: 17
18760397 CATTCATATC
* *
18760407 TTTTCCTTTTCATTTTCG
1 TTTTTCTTTTC-TTTTCT
**
18760425 TTTTTCTTTTCTCCTCT
1 TTTTTCTTTTCTTTTCT
18760442 TTTCTT-TTGTTCTTTTCT
1 TTT-TTCTT-TTCTTTTCT
18760460 TTTGTTCTTTTCTTTT-T
1 TTT-TTCTTTTCTTTTCT
*
18760477 TTTTTCTTTTTTTTTC
1 TTTTTCTTTTCTTTTC
18760493 ATTCCTTATT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
16 11 0.20
17 12 0.21
18 31 0.55
19 2 0.04
ACGTcount: A:0.01, C:0.19, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTCT
Found at i:18760491 original size:13 final size:13
Alignment explanation
Indices: 18760439--18760486 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
18760429 TCTTTTCTCC
18760439 TCTTTTCTTTTGT
1 TCTTTTCTTTTGT
18760452 TCTTTTCTTTTGT
1 TCTTTTCTTTTGT
18760465 TCTTTTCTTTT-T
1 TCTTTTCTTTTGT
18760477 T-TTTTCTTTT
1 TCTTTTCTTTT
18760487 TTTTTCATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.26
12 2 0.06
13 24 0.69
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (13 bp):
TCTTTTCTTTTGT
Found at i:18761278 original size:11 final size:12
Alignment explanation
Indices: 18761258--18761302 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
18761248 GAAAACTTTC
*
18761258 TTTTTCTTCTTA
1 TTTTTATTCTTA
18761270 TTTTT-TTCTTA
1 TTTTTATTCTTA
*
18761281 TTTTTTTTCTT-
1 TTTTTATTCTTA
18761292 TTTTTATTCTT
1 TTTTTATTCTT
18761303 TTCTTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 21 0.68
12 10 0.32
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTATTCTTA
Found at i:18761285 original size:12 final size:11
Alignment explanation
Indices: 18761253--18761311 Score: 64
Period size: 12 Copynumber: 5.0 Consensus size: 11
18761243 TAAAGGAAAA
18761253 CTTTCTTTTTCTT
1 CTTT-TTTTT-TT
*
18761266 CTTATTTTTTT
1 CTTTTTTTTTT
18761277 CTTATTTTTTTT
1 CTT-TTTTTTTT
*
18761289 CTTTTTTTATT
1 CTTTTTTTTTT
18761300 CTTTTCTTTTTT
1 CTTTT-TTTTTT
18761312 AAAGTACTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
11 17 0.43
12 20 0.50
13 3 0.08
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:18761290 original size:23 final size:22
Alignment explanation
Indices: 18761253--18761311 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 22
18761243 TAAAGGAAAA
18761253 CTTTCTTTTTCTTCTTATTTTT-TT
1 CTTT-TTTTT-TTCTT-TTTTTATT
18761277 CTTATTTTTTTTCTTTTTTTATT
1 CTT-TTTTTTTTCTTTTTTTATT
18761300 CTTTTCTTTTTT
1 CTTTT-TTTTTT
18761312 AAAGTACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
22 7 0.22
23 16 0.50
24 8 0.25
25 1 0.03
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (22 bp):
CTTTTTTTTTTCTTTTTTTATT
Found at i:18761298 original size:17 final size:16
Alignment explanation
Indices: 18761258--18761311 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
18761248 GAAAACTTTC
*
18761258 TTTTTCTTCTTATT-TT
1 TTTTTATTCTT-TTCTT
*
18761274 TTTCTTATTTTTTTTCTT
1 TTT-TTA-TTCTTTTCTT
18761292 TTTTTATTCTTTTCTT
1 TTTTTATTCTTTTCTT
18761308 TTTT
1 TTTT
18761312 AAAGTACTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 16 0.50
17 7 0.22
18 9 0.28
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTATTCTTTTCTT
Found at i:18763548 original size:157 final size:157
Alignment explanation
Indices: 18763258--18763570 Score: 511
Period size: 157 Copynumber: 2.0 Consensus size: 157
18763248 ATATTTAAGC
*
18763258 AGTTAAAGAGAAAGCATACAAGTTACTAGCTACAGGATATGTCAAGGAAGTTAAGTACCCTAATT
1 AGTTAAAAAGAAAGCATACAAGTTACTAGCTACAGGATATGTCAAGGAAGTTAAGTACCCTAATT
18763323 GGTTGGCCAATATGGTGATGGTAAAGAAAGCTAATGAAAAATGGTGGATATGCATAGACTTCACT
66 GGTTGGCCAATATGGTGATGGTAAAGAAAGCTAATGAAAAATGGTGGATATGCATAGACTTCACT
18763388 GATTTTAATAAGGCTTGCACCAAAAAT
131 GATTTTAATAAGGCTTGCACCAAAAAT
* * * * * *
18763415 AGTTAAAAAGAAAGCATACAAGTTATTGGTTGTC-GGATATGTCATGGAAGTTAAGTATCCTAAT
1 AGTTAAAAAGAAAGCATACAAGTTACTAGCT-ACAGGATATGTCAAGGAAGTTAAGTACCCTAAT
* * *
18763479 TGGTTGGCCAATATGGTGATGGTAAAGAAAGTTAATGAAAAATGGTGGATGTGCATAGACTTCAT
65 TGGTTGGCCAATATGGTGATGGTAAAGAAAGCTAATGAAAAATGGTGGATATGCATAGACTTCAC
*
18763544 TGATTTTAATAAGGCTTGTACCAAAAA
130 TGATTTTAATAAGGCTTGCACCAAAAA
18763571 CAATTTCCCT
Statistics
Matches: 144, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
157 143 0.99
158 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (157 bp):
AGTTAAAAAGAAAGCATACAAGTTACTAGCTACAGGATATGTCAAGGAAGTTAAGTACCCTAATT
GGTTGGCCAATATGGTGATGGTAAAGAAAGCTAATGAAAAATGGTGGATATGCATAGACTTCACT
GATTTTAATAAGGCTTGCACCAAAAAT
Found at i:18766763 original size:30 final size:30
Alignment explanation
Indices: 18766729--18766861 Score: 79
Period size: 30 Copynumber: 4.3 Consensus size: 30
18766719 TTTATTATAT
*
18766729 TCAAATAAGCCGCTAAATTTTAATTTACAC
1 TCAAATAAACCGCTAAATTTTAATTTACAC
* ** * * ** *
18766759 TCAAATAAAATCTTTAACTTTCAATTTGTAT
1 TCAAAT-AAACCGCTAAATTTTAATTTACAC
* ** * *
18766790 TTAAATAAACC-CTTAACATTTCTTTTATTATAT
1 TCAAATAAACCGC-TAA-ATTT-TAAT-TTACAC
*
18766823 TCAAATAAGCCGCTAAATTTTAATTTACAC
1 TCAAATAAACCGCTAAATTTTAATTTACAC
18766853 TCAAATAAA
1 TCAAATAAA
18766862 ATCTTTAACT
Statistics
Matches: 73, Mismatches: 24, Indels: 12
0.67 0.22 0.11
Matches are distributed among these distances:
30 25 0.34
31 25 0.34
32 5 0.07
33 17 0.23
34 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.39
Consensus pattern (30 bp):
TCAAATAAACCGCTAAATTTTAATTTACAC
Found at i:18766796 original size:31 final size:31
Alignment explanation
Indices: 18766761--18766927 Score: 83
Period size: 31 Copynumber: 5.4 Consensus size: 31
18766751 ATTTACACTC
*
18766761 AAATAAAATCTTTAACTTTCAATTTGTATTT
1 AAATAAAACCTTTAACTTTCAATTTGTATTT
* * *
18766792 AAAT-AAACCCTTAACATTTC-TTTTATTATATT
1 AAATAAAACCTTTAAC-TTTCAATTT-GTAT-TT
* ** * * ** * *
18766824 CAAAT-AAGCCGCTAAATTTTAATTTACACTC
1 -AAATAAAACCTTTAACTTTCAATTTGTATTT
*
18766855 AAATAAAATCTTTAACTTTCAATTTGTATTT
1 AAATAAAACCTTTAACTTTCAATTTGTATTT
* * **
18766886 AAAT-AAACCCTTAACATTT-AATTTATACCT
1 AAATAAAACCTTTAAC-TTTCAATTTGTATTT
*
18766916 AAATAAATCCTT
1 AAATAAAACCTT
18766928 AATATAAGTA
Statistics
Matches: 97, Mismatches: 31, Indels: 16
0.67 0.22 0.11
Matches are distributed among these distances:
30 37 0.38
31 40 0.41
32 6 0.06
33 14 0.14
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (31 bp):
AAATAAAACCTTTAACTTTCAATTTGTATTT
Found at i:18766815 original size:94 final size:94
Alignment explanation
Indices: 18766717--18766904 Score: 376
Period size: 94 Copynumber: 2.0 Consensus size: 94
18766707 AACTCTTATA
18766717 CTTTTATTATATTCAAATAAGCCGCTAAATTTTAATTTACACTCAAATAAAATCTTTAACTTTCA
1 CTTTTATTATATTCAAATAAGCCGCTAAATTTTAATTTACACTCAAATAAAATCTTTAACTTTCA
18766782 ATTTGTATTTAAATAAACCCTTAACATTT
66 ATTTGTATTTAAATAAACCCTTAACATTT
18766811 CTTTTATTATATTCAAATAAGCCGCTAAATTTTAATTTACACTCAAATAAAATCTTTAACTTTCA
1 CTTTTATTATATTCAAATAAGCCGCTAAATTTTAATTTACACTCAAATAAAATCTTTAACTTTCA
18766876 ATTTGTATTTAAATAAACCCTTAACATTT
66 ATTTGTATTTAAATAAACCCTTAACATTT
18766905 AATTTATACC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (94 bp):
CTTTTATTATATTCAAATAAGCCGCTAAATTTTAATTTACACTCAAATAAAATCTTTAACTTTCA
ATTTGTATTTAAATAAACCCTTAACATTT
Found at i:18766900 original size:30 final size:30
Alignment explanation
Indices: 18766772--18766929 Score: 106
Period size: 30 Copynumber: 5.1 Consensus size: 30
18766762 AATAAAATCT
*
18766772 TTAACTTTCAATTTGTATTTAAATAAACCC
1 TTAACTTTCAATTTATATTTAAATAAACCC
* *
18766802 TTAACATTTC-TTTTATTATATTCAAATAAGCCGC
1 TTAAC-TTTCAATTTA-TAT-TT-AAATAAACC-C
* * * * * * *
18766836 -TAAATTTTAATTTACACTCAAATAAAATCT
1 TTAACTTTCAATTTATATTTAAAT-AAACCC
*
18766866 TTAACTTTCAATTTGTATTTAAATAAACCC
1 TTAACTTTCAATTTATATTTAAATAAACCC
** *
18766896 TTAACATTT-AATTTATACCTAAATAAATCC
1 TTAAC-TTTCAATTTATATTTAAATAAACCC
18766926 TTAA
1 TTAA
18766930 TATAAGTAAA
Statistics
Matches: 95, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
30 42 0.44
31 31 0.33
32 6 0.06
33 15 0.16
34 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (30 bp):
TTAACTTTCAATTTATATTTAAATAAACCC
Found at i:18768573 original size:14 final size:14
Alignment explanation
Indices: 18768535--18768573 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
18768525 ATCACATCAA
18768535 ACTTTATTAAAATT
1 ACTTTATTAAAATT
*
18768549 A-TTTTTATAAAATT
1 ACTTTAT-TAAAATT
18768563 ACTTTATTAAA
1 ACTTTATTAAA
18768574 GTTATTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
13 4 0.19
14 13 0.62
15 4 0.19
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (14 bp):
ACTTTATTAAAATT
Found at i:18776537 original size:2 final size:2
Alignment explanation
Indices: 18776532--18776564 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
18776522 TGTGTGTGTG
18776532 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18776565 TGTAAAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18779712 original size:3 final size:3
Alignment explanation
Indices: 18779704--18779742 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
18779694 AAAAGAATCA
18779704 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
18779743 CAAAGCTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18784445 original size:29 final size:29
Alignment explanation
Indices: 18784386--18784445 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
18784376 TGAGGGTAAT
* * * *
18784386 TTGATTGAACTATGCCTTTATTAAGGTAA
1 TTGATTGAACTACGCCTTTATAAAAGCAA
* *
18784415 TTGATTGAGCTACGCTTTTATAAAAGCAA
1 TTGATTGAACTACGCCTTTATAAAAGCAA
18784444 TT
1 TT
18784446 TACTAAGCTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.40
Consensus pattern (29 bp):
TTGATTGAACTACGCCTTTATAAAAGCAA
Found at i:18784584 original size:30 final size:30
Alignment explanation
Indices: 18784518--18784625 Score: 76
Period size: 30 Copynumber: 3.6 Consensus size: 30
18784508 TCGAGTTAAG
* *
18784518 CTTTTATGGAGGTAATTTGATCAAATTGAA
1 CTTTTATGAAGGTAATTTGACCAAATTGAA
* * *
18784548 CATTTATGAAGGTAATTTGCCCAAGTTGAGA
1 CTTTTATGAAGGTAATTTGACCAAATTGA-A
* * ** ** *
18784579 -TTTTATAAAGGCAA-TTGGGCAAGCTAAA
1 CTTTTATGAAGGTAATTTGACCAAATTGAA
*
18784607 CTTTTATGAAAGTAATTTG
1 CTTTTATGAAGGTAATTTG
18784626 CAATTAGCTG
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
28 1 0.02
29 20 0.33
30 38 0.63
31 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (30 bp):
CTTTTATGAAGGTAATTTGACCAAATTGAA
Found at i:18784805 original size:29 final size:28
Alignment explanation
Indices: 18784694--18784806 Score: 100
Period size: 29 Copynumber: 3.9 Consensus size: 28
18784684 AATTTAACAG
* * * *
18784694 AGCTAAACCTTTATGAAAGTAATTAGCC
1 AGCTAAGCCTTTATGAAAATAATTTGTC
* * * * *
18784722 AAGTTTAGCTTTTATGAAAACAATTGGTC
1 -AGCTAAGCCTTTATGAAAATAATTTGTC
* *
18784751 GAGGTAAGCCTTTATAAAAATAATTTGTC
1 -AGCTAAGCCTTTATGAAAATAATTTGTC
18784780 ATGCTAAGCCTTTATGAAAATAATTTG
1 A-GCTAAGCCTTTATGAAAATAATTTG
18784807 GCTAAGCTAA
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 1 0.02
29 65 0.98
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (28 bp):
AGCTAAGCCTTTATGAAAATAATTTGTC
Found at i:18784917 original size:29 final size:29
Alignment explanation
Indices: 18784695--18784924 Score: 90
Period size: 29 Copynumber: 7.9 Consensus size: 29
18784685 ATTTAACAGA
* * * *
18784695 GCTAAACCTTTATGAAAGTAATTAGCCAA
1 GCTAAGCCTTTATGAAAGTAATTTGTCAT
* * * ** *
18784724 GTTTAGCTTTTATGAAAACAATTGGTCGA-
1 GCTAAGCCTTTATGAAAGTAATTTGTC-AT
* * *
18784753 GGTAAGCCTTTATAAAAATAATTTGTCAT
1 GCTAAGCCTTTATGAAAGTAATTTGTCAT
* * *
18784782 GCTAAGCCTTTATGAAAATAATTTGGCTAA
1 GCTAAGCCTTTATGAAAGTAATTTGTC-AT
*** ** * *
18784812 GCTAAATGTTTACAAAAGCAATTGGTCGA-
1 GCTAAGCCTTTATGAAAGTAATTTGTC-AT
* * * *
18784841 GCTAAGCTTTTAT-AAGGGTAATATGAC-T
1 GCTAAGCCTTTATGAA-AGTAATTTGTCAT
* * **
18784869 GAGTTAAACCTTTAAAAAAGTAATTTGTCAT
1 --GCTAAGCCTTTATGAAAGTAATTTGTCAT
*
18784900 GCTAAGCCTTTATGAAAGTATTTTG
1 GCTAAGCCTTTATGAAAGTAATTTG
18784925 ACTGAATTGA
Statistics
Matches: 143, Mismatches: 49, Indels: 18
0.68 0.23 0.09
Matches are distributed among these distances:
28 3 0.02
29 99 0.69
30 38 0.27
31 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.34
Consensus pattern (29 bp):
GCTAAGCCTTTATGAAAGTAATTTGTCAT
Found at i:18784927 original size:59 final size:60
Alignment explanation
Indices: 18784759--18784953 Score: 184
Period size: 59 Copynumber: 3.3 Consensus size: 60
18784749 TCGAGGTAAG
* * * *
18784759 CCTTTATAAAAA-TAATTTGTCATGCTAAGCCTTTATGAAAATAATTTGGCTAAGCTAAA
1 CCTTTATAAAAAGTAATTTGTCATGCTAAGCCTTTATGAAAGTAATTTGACTGAGTTAAA
** * * * * * *
18784818 TGTTTA-CAAAAGCAATTGGTCGA-GCTAAGCTTTTAT-AAGGGTAATATGACTGAGTTAAA
1 CCTTTATAAAAAGTAATTTGTC-ATGCTAAGCCTTTATGAA-AGTAATTTGACTGAGTTAAA
* * * *
18784877 CCTTTA-AAAAAGTAATTTGTCATGCTAAGCCTTTATGAAAGTATTTTGACTGAATTGAT
1 CCTTTATAAAAAGTAATTTGTCATGCTAAGCCTTTATGAAAGTAATTTGACTGAGTTAAA
*
18784936 CCTTTATAAAAGGTAATT
1 CCTTTATAAAAAGTAATT
18784954 GATCGAGTTG
Statistics
Matches: 105, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
58 7 0.07
59 85 0.81
60 13 0.12
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (60 bp):
CCTTTATAAAAAGTAATTTGTCATGCTAAGCCTTTATGAAAGTAATTTGACTGAGTTAAA
Found at i:18785175 original size:29 final size:29
Alignment explanation
Indices: 18785061--18785177 Score: 94
Period size: 29 Copynumber: 4.0 Consensus size: 29
18785051 TAAACGTTAA
*
18785061 GAAGGTAATTTGGTCA-AGTTGAGCTTTTAT
1 GAAGGTAA-TTGGT-AGAGCTGAGCTTTTAT
* * * *
18785091 AAAGGTAATTAGTTGAGCTTAGCTTTTAT
1 GAAGGTAATTGGTAGAGCTGAGCTTTTAT
* * * * *
18785120 GAAAGCAATTGGTCGAACTGAG-TCTTTGT
1 GAAGGTAATTGGTAGAGCTGAGCT-TTTAT
18785149 GAAGGTAATTTGGTAGAGCTGAGCTTTTA
1 GAAGGTAA-TTGGTAGAGCTGAGCTTTTA
18785178 ATAAGGCAAT
Statistics
Matches: 65, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
28 1 0.02
29 41 0.63
30 22 0.34
31 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37
Consensus pattern (29 bp):
GAAGGTAATTGGTAGAGCTGAGCTTTTAT
Found at i:18785320 original size:47 final size:46
Alignment explanation
Indices: 18785221--18785339 Score: 141
Period size: 47 Copynumber: 2.5 Consensus size: 46
18785211 ATACTTGAAT
* *** *
18785221 CTTTATGAAGATAATTTCATCGAAATAAGTTTTTTGTTTAACTGAGC
1 CTTTATGAAGATAATTTCATC-AAATAACTTTTTTGCCAAACTAAGC
*
18785268 TTTTATGAAGATAATTTCATCAAGATAACTTTTTTGCCAAACTAAGC
1 CTTTATGAAGATAATTTCATCAA-ATAACTTTTTTGCCAAACTAAGC
*
18785315 CTTTAT-AAAAGTAATTTCATCAAAT
1 CTTTATGAAGA-TAATTTCATCAAAT
18785340 CCAGGTCATT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
46 7 0.11
47 55 0.89
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (46 bp):
CTTTATGAAGATAATTTCATCAAATAACTTTTTTGCCAAACTAAGC
Found at i:18785717 original size:40 final size:40
Alignment explanation
Indices: 18785660--18785758 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
18785650 TGTTTCCATG
* * *
18785660 GTAGAGCTCA-TCTACTTTTTTAGCTTCACATATTGTTAGA
1 GTAGAACTCATTC-ACTTTTGTAGCTTCACATATTGTTAAA
* * *
18785700 GTATAACTTATTCACTTTTGTAGCTTTACATATTGTTAAA
1 GTAGAACTCATTCACTTTTGTAGCTTCACATATTGTTAAA
*
18785740 GTAGAGCTCATTCACTTTT
1 GTAGAACTCATTCACTTTT
18785759 ATAACATTAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.44
Consensus pattern (40 bp):
GTAGAACTCATTCACTTTTGTAGCTTCACATATTGTTAAA
Found at i:18790100 original size:26 final size:25
Alignment explanation
Indices: 18790070--18790182 Score: 88
Period size: 26 Copynumber: 4.3 Consensus size: 25
18790060 TAATATAATG
*
18790070 TAATATAATACAATATTATATTATTAA
1 TAATATAA-AAAATATT-TATTATTAA
18790097 -AATATTAAAAAATATTTATTATTAA
1 TAATA-TAAAAAATATTTATTATTAA
* * *
18790122 TAATATTCAAAATAATA-ATATTTGTTAT
1 TAATA-T-AAAA-AATATTTA-TTATTAA
*
18790150 TAGATATTAAAAATATTTATTATTAA
1 TA-ATATAAAAAATATTTATTATTAA
18790176 TAA-ATAA
1 TAATATAA
18790183 GATATGGTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
24 3 0.04
25 10 0.14
26 28 0.40
27 14 0.20
28 12 0.17
29 3 0.04
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
TAATATAAAAAATATTTATTATTAA
Found at i:18790597 original size:17 final size:17
Alignment explanation
Indices: 18790575--18790609 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18790565 AAATTGCCAA
* *
18790575 AATTATTTATGCATGTT
1 AATTATATATACATGTT
18790592 AATTATATATACATGTT
1 AATTATATATACATGTT
18790609 A
1 A
18790610 GTCACGAGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (17 bp):
AATTATATATACATGTT
Found at i:18791453 original size:23 final size:21
Alignment explanation
Indices: 18791426--18791471 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
18791416 GTTTAAAATT
18791426 TGTTTGGTTGAAAAAATACAAAA
1 TGTTTGGTTG-AAAAATA-AAAA
**
18791449 TGTTTTTTTGAAAAATAAAAA
1 TGTTTGGTTGAAAAATAAAAA
18791470 TG
1 TG
18791472 AAAATAGGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTTTGGTTGAAAAATAAAAA
Found at i:18792105 original size:3 final size:3
Alignment explanation
Indices: 18792097--18792122 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18792087 AAAATTACAT
18792097 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
18792123 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:18792572 original size:19 final size:19
Alignment explanation
Indices: 18792523--18792577 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
18792513 AAAATTCAAA
18792523 ATAATAAAAAAAGTAAAAAT
1 ATAATAAAAAAA-TAAAAAT
** *
18792543 ATTTTATAAAAATAAAAAT
1 ATAATAAAAAAATAAAAAT
*
18792562 ATAATAGAAAATATAA
1 ATAATA-AAAAAATAA
18792578 TTATTCTCAA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (19 bp):
ATAATAAAAAAATAAAAAT
Found at i:18793057 original size:38 final size:37
Alignment explanation
Indices: 18792955--18793066 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
18792945 TATTATGAGT
18792955 AATAAAGCAAATGAACCTTGTCTATTATAAAAAAAAA
1 AATAAAGCAAATGAACCTTGTCTATTATAAAAAAAAA
18792992 AATAAAGCAAATGAACCTTGTCTATTATAAAAAAAAA
1 AATAAAGCAAATGAACCTTGTCTATTATAAAAAAAAA
* * *
18793029 AATAAAGCAAATGGACCTTGTCCCATTATAATAAAAAA
1 AATAAAGCAAATGAACCTTGT-CTATTATAAAAAAAAA
18793067 TATTTTTTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 57 0.80
38 14 0.20
ACGTcount: A:0.54, C:0.12, G:0.09, T:0.24
Consensus pattern (37 bp):
AATAAAGCAAATGAACCTTGTCTATTATAAAAAAAAA
Found at i:18795480 original size:767 final size:765
Alignment explanation
Indices: 18793883--18795396 Score: 2472
Period size: 767 Copynumber: 2.0 Consensus size: 765
18793873 GTATTCAAAC
* * *** ** *
18793883 AATAATACCAGTTGATTTCGTGTTATTCAAGTTTTAAAACATATTTATAATTTTATCAAATAAAT
1 AATAATACCACTTGATTACGTGTTATTCAAGCAATAAAACATACCTATAATTTAATCAAATAAAT
* * *
18793948 TTAATATTAGAGATTAATCTTTAAATTACTTTAATAATTTGGAAGTGAATTACGAAAATTTTTAC
66 TTAATATTAAAGATTAATCTTAAAATTACTTTAATAATTTGGAAGTAAATTACGAAAATTTTTAC
* *
18794013 ATCTTAAGAATATTCATGGAGACTAGTATTCCACTCTAAAGAAACTCTATCTTAGATTCATTATT
131 ATCTTAAGAATATTCATGGAGAATAGTATTCCACTCTAAAGAAACTCTATCTCAGATTCATTATT
*
18794078 GTGCATTCAATAAATTAATTAATTTCAAAATCAATAAAAGTTTTCAATAATTTGGTAAGATTTTA
196 GTGCATTCAATAAATTAATTAATTTCAAAATCAATAAAAGTTTTCAATAATTTAGTAAGATTTTA
*
18794143 TTTCGACGGACATCTTCTAATAGTTTGGTAAATTTTTTATTTAAAAATTTATTTATGGATTTTTA
261 TTTCGACGGACATCTTCTAATAGTTTGGTAAAATTTTTATTTAAAAATTTATTTATGGATTTTT-
* *
18794208 AAAAAAAATCACTAAATCTTCCAATAATTTGGTAAGATTTAGTTTTGAGATTTATATCTTCCAAT
325 AAAAAAAATCACTAAATCTTCCAATAATTTGCTAAAATTTAGTTTTGAGATTTATATCTTCCAAT
* *
18794273 AGTTTGATAGGATTGGAAATTTGATATTTTTTATAAAAATCATTAAATCTTCCAATACTTTGGAA
390 AGTTTGATAGGATTGGAAATTTGATATTTTTTATAAAAATAATTAAATCCTCCAATACTTTGGAA
*
18794338 AGATTTAACCTTGAGATTTAAATCCTTTAATAGTTTGGTAAAATCGATTCAAAAATATTTTAATT
455 AGATTTAACCTTGAGATTTAAATCCTTTAATAGTTTGGTAAAATCGATTCAAAAACATTTTAATT
*
18794403 TAATTTTCTTATAAAGTCGTCCAATAGTTTGGTAGGATTCATGGATTTATTTAAAAAATATTTTT
520 TAATTTTCTTATAAAATCGTCCAATAGTTTGGTAGGATTCATGGATTTATTTAAAAAATATTTTT
18794468 AACAAAATTTAATTTAAATAAAATGAATAAATAAAATTTAGATAAATAAGTTAAATAAATAAAAG
585 AACAAAATTTAATTTAAATAAAATGAATAAATAAAATTTAGATAAATAAGTTAAATAAATAAAAG
*
18794533 CAAGTAAATAACAAGATATAACAAAATAAAAATAAAAATCAAATAGAATAAAATTCAACTAATAG
650 CAAGTAAATAACAAGATATAACAAAATAAAAATAAAAATCAAATAGAATAAAAATCAACTAATAG
* * * * *
18794598 CTTATGATTCGAATGCACCTTCCAATAACACCCTCACAACACGCATTCAAAA
715 CTTATGATCCGAATGCACCCTCCAATAACAACCTAACAACACACATT-AAAA
* * *** ** *
18794650 AATAATACCAGTTGATTTCGTGTTATTCAAGTTTTAAAACATATTTATAATTTTATCAAATAAAT
1 AATAATACCACTTGATTACGTGTTATTCAAGCAATAAAACATACCTATAATTTAATCAAATAAAT
* *
18794715 TTAATATTAAATATTAATCTTAAAATTACTTTAATAATTTGGAAGTAAATTACGAAAATTTTTTC
66 TTAATATTAAAGATTAATCTTAAAATTACTTTAATAATTTGGAAGTAAATTACGAAAATTTTTAC
* *
18794780 ATCTTAAGAATATTCATGGAGAATAGTATTCCACTCTAAAGAGACTCTATCATCATATTCATTAT
131 ATCTTAAGAATATTCATGGAGAATAGTATTCCACTCTAAAGAAACTCTATC-TCAGATTCATTAT
* *
18794845 TGTGCATTGAATAAATTAATTAATTTCAAAATCAATAAAATTTTTCAATAATTTAGTAAGATTTT
195 TGTGCATTCAATAAATTAATTAATTTCAAAATCAATAAAAGTTTTCAATAATTTAGTAAGATTTT
18794910 ATTTCGACGGACATCTTCTAATAGTTTGGTAAAATTTTTATTTAAAAATTTATTTATGGATTTGT
260 ATTTCGACGGACATCTTCTAATAGTTTGGTAAAATTTTTATTTAAAAATTTATTTATGGATTT-T
* * *
18794975 T-TAAAAGATCACTAAATCTTCCATTAATTTGCTAAAATTTAGTTTTGAGATTTATATCTTCCAA
324 TAAAAAAAATCACTAAATCTTCCAATAATTTGCTAAAATTTAGTTTTGAGATTTATATCTTCCAA
18795039 TAGTTTGATAGGATTGGAAATTTGATATTTTTTATAAAAATAATTAAATCCTCCAATACTTTGGA
389 TAGTTTGATAGGATTGGAAATTTGATATTTTTTATAAAAATAATTAAATCCTCCAATACTTTGGA
* ** *
18795104 AAGATTTAACCTTGAGATTTAAATTCTTTAATAGTTTGGTAGGATCGGTTCAAAAACATTTTTAA
454 AAGATTTAACCTTGAGATTTAAATCCTTTAATAGTTTGGTAAAATCGATTCAAAAACA-TTTTAA
* *
18795169 TTTAATTTTCTTATAAAATCGTCCAATAGTTTGGTAGGATTCATGGATTTTTTTTAAAAATATTT
518 TTTAATTTTCTTATAAAATCGTCCAATAGTTTGGTAGGATTCATGGATTTATTTAAAAAATATTT
18795234 TTAACAAAATTTAATTTAAATAAAATGAATAAATAAAATTTAGATAAATAAGTTAAATAAATAAA
583 TTAACAAAATTTAATTTAAATAAAATGAATAAATAAAATTTAGATAAATAAGTTAAATAAATAAA
* * *
18795299 AGCAAGTAAATAACAAGATATAATAAAATCAAAATCAAAATCAAATAGAATAAAAAAATCAAACT
648 AGCAAGTAAATAACAAGATATAACAAAATAAAAATAAAAATCAAATAGAAT--AAAAATC-AACT
18795364 AATAGCTTATGATCCGAATGCACCCTCCAATAA
710 AATAGCTTATGATCCGAATGCACCCTCCAATAA
18795397 AAGTTAATAT
Statistics
Matches: 707, Mismatches: 34, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
767 348 0.49
768 316 0.45
769 2 0.00
770 6 0.01
771 35 0.05
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (765 bp):
AATAATACCACTTGATTACGTGTTATTCAAGCAATAAAACATACCTATAATTTAATCAAATAAAT
TTAATATTAAAGATTAATCTTAAAATTACTTTAATAATTTGGAAGTAAATTACGAAAATTTTTAC
ATCTTAAGAATATTCATGGAGAATAGTATTCCACTCTAAAGAAACTCTATCTCAGATTCATTATT
GTGCATTCAATAAATTAATTAATTTCAAAATCAATAAAAGTTTTCAATAATTTAGTAAGATTTTA
TTTCGACGGACATCTTCTAATAGTTTGGTAAAATTTTTATTTAAAAATTTATTTATGGATTTTTA
AAAAAAATCACTAAATCTTCCAATAATTTGCTAAAATTTAGTTTTGAGATTTATATCTTCCAATA
GTTTGATAGGATTGGAAATTTGATATTTTTTATAAAAATAATTAAATCCTCCAATACTTTGGAAA
GATTTAACCTTGAGATTTAAATCCTTTAATAGTTTGGTAAAATCGATTCAAAAACATTTTAATTT
AATTTTCTTATAAAATCGTCCAATAGTTTGGTAGGATTCATGGATTTATTTAAAAAATATTTTTA
ACAAAATTTAATTTAAATAAAATGAATAAATAAAATTTAGATAAATAAGTTAAATAAATAAAAGC
AAGTAAATAACAAGATATAACAAAATAAAAATAAAAATCAAATAGAATAAAAATCAACTAATAGC
TTATGATCCGAATGCACCCTCCAATAACAACCTAACAACACACATTAAAA
Found at i:18800146 original size:22 final size:20
Alignment explanation
Indices: 18800111--18800151 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
18800101 CATTATTTTT
18800111 TTTTTAGTTCTTTAGTTTAC
1 TTTTTAGTTCTTTAGTTTAC
18800131 TTTTTAGTTTCTTTTAGTTTA
1 TTTTTAG-TTC-TTTAGTTTA
18800152 TTGTTATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 3 0.16
22 9 0.47
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (20 bp):
TTTTTAGTTCTTTAGTTTAC
Found at i:18804544 original size:875 final size:876
Alignment explanation
Indices: 18803022--18804777 Score: 3487
Period size: 875 Copynumber: 2.0 Consensus size: 876
18803012 CAAGCTATTA
18803022 AAAATTTATTGTGATAATGGCGCAACAGTTTTTTTTTTCTAAAAACAGGTATGCGAAAGGTGTTA
1 AAAATTTATTGTGATAATGGCGCAACAGTTTTTTTTTTCTAAAAACAGGTATGCGAAAGGTGTTA
18803087 AACACATGAAATTAAAATATTTTACCATTAAAGAAAAAGTTTAGAAACAAAAAGTGTCAATTGAA
66 AACACATGAAATTAAAATATTTTACCATTAAAGAAAAAGTTTAGAAACAAAAAGTGTCAATTGAA
18803152 TATATTAACACCAATCTTATGGTTACAGATCCATTAACAAAAAGTTTACCACTAAAGACATTTAA
131 TATATTAACACCAATCTTATGGTTACAGATCCATTAACAAAAAGTTTACCACTAAAGACATTTAA
18803217 TGAACATGTTGAAAGAATGGGCATTATTTATTGAAAATTATTATTAACATTATGATACAATTTTA
196 TGAACATGTTGAAAGAATGGGCATTATTTATTGAAAATTATTATTAACATTATGATACAATTTTA
18803282 TGGTTTTTTTTATAAATTTGACATTTTGAGCTCTTTTAAGTACTATTTTTGATATATTAACACAT
261 TGGTTTTTTTTATAAATTTGACATTTTGAGCTCTTTTAAGTACTATTTTTGATATATTAACACAT
18803347 CATGTTTCATTATGTTAGTATATACATATGATTGAGTTATGTAAATGTGAACAAAATTTATCTTT
326 CATGTTTCATTATGTTAGTATATACATATGATTGAGTTATGTAAATGTGAACAAAATTTATCTTT
18803412 AACAAAGATATTATTGTTCGAACATTATGATGTTCTCATTATAGATTATGTTGAGTATAAAACTA
391 AACAAAGATATTATTGTTCGAACATTATGATGTTCTCATTATAGATTATGTTGAGTATAAAACTA
18803477 AAATTATGATACCTAAAAAAGATTATGTAAAGTTAATGACATGCAATTGTTATGATTTTTATTAG
456 AAATTATGATACCTAAAAAAGATTATGTAAAGTTAATGACATGCAATTGTTATGATTTTTATTAG
18803542 TTTTATACTAAATGATGATTTATGATTTGATCAATTAAATAAATGACTTAGCTTATATTATGTGC
521 TTTTATACTAAATGATGATTTATGATTTGATCAATTAAATAAATGACTTAGCTTATATTATGTGC
18803607 ATTATGTTTTGTTATTAAACCATAAAATTAAAACTATAAAGTTAAATAATAACACGTAGGCCAAG
586 ATTATGTTTTGTTATTAAACCATAAAATTAAAACTATAAAGTTAAATAATAACACGTAGGCCAAG
18803672 TGAGAGAATGTTAAATTTATGTATGTTACATGCAAGTTATTCAATATTAAATAAATATCTTTTAA
651 TGAGAGAATGTTAAATTTATGTATGTTACATGCAAGTTATTCAATATTAAATAAATATCTTTTAA
18803737 TTTTACTTAAAATATAAAATAGTTTAATGAATGTTATAAGTTAAAAAAAACTTATTAATCAAATA
716 TTTTACTTAAAATATAAAATAGTTTAATGAATGTTATAAGTTAAAAAAAACTTATTAATCAAATA
18803802 AAAAAGGGAGTTATTTTGTTAATGACTCATATTGACGGAATATGAGAATAAAAGCTATTAAATAT
781 AAAAAGGGAGTTATTTTGTTAATGACTCATATTGACGGAATATGAGAATAAAAGCTATTAAATAT
18803867 TATAAGTTTATTTATGAATGAATACTAACGC
846 TATAAGTTTATTTATGAATGAATACTAACGC
*
18803898 AAAATTTATTGTGATAATGGCGCAACAGTTTTTTTTTTCTAAAAATAGGTATGCGAAAGGTGTTA
1 AAAATTTATTGTGATAATGGCGCAACAGTTTTTTTTTTCTAAAAACAGGTATGCGAAAGGTGTTA
18803963 AACACATGAAATTAAAATATTTTACCATTAAAGAAAAAGTTTAGAAACAAAAAGTGTCAATTGAA
66 AACACATGAAATTAAAATATTTTACCATTAAAGAAAAAGTTTAGAAACAAAAAGTGTCAATTGAA
18804028 TATATTAACACCAATCTTATGGTTACAGATCCATTAACAAAAAGTTTACCACTAAAGACATTTAA
131 TATATTAACACCAATCTTATGGTTACAGATCCATTAACAAAAAGTTTACCACTAAAGACATTTAA
18804093 TGAACATGTTGAAAGAATGGGCATTATTTATTGAAAATTATTATTAACATTATGATACAATTTTA
196 TGAACATGTTGAAAGAATGGGCATTATTTATTGAAAATTATTATTAACATTATGATACAATTTTA
18804158 TGG-TTTTTTTATAAATTTGACATTTTGAGCTCTTTTAAGTACTATTTTTGATATATTAACACAT
261 TGGTTTTTTTTATAAATTTGACATTTTGAGCTCTTTTAAGTACTATTTTTGATATATTAACACAT
18804222 CATGTTTCATTATGTTAGTATATACATATGATTGAGTTATGTAAATGTGAACAAAATTTATCTTT
326 CATGTTTCATTATGTTAGTATATACATATGATTGAGTTATGTAAATGTGAACAAAATTTATCTTT
*
18804287 ACCAAAGATATTATTGTTCGAACATTATGATGTTCTCATTATAGATTATGTTGAGTATAAAACTA
391 AACAAAGATATTATTGTTCGAACATTATGATGTTCTCATTATAGATTATGTTGAGTATAAAACTA
18804352 AAATTATGATACCTAAAAAAGATTATGTAAAGTTAATGACATGCAATTGTTATGATTTTTATTAG
456 AAATTATGATACCTAAAAAAGATTATGTAAAGTTAATGACATGCAATTGTTATGATTTTTATTAG
18804417 TTTTATACTAAATGATGATTTATGATTTGATCAATTAAATAAATGACTTAGCTTATATTATGTGC
521 TTTTATACTAAATGATGATTTATGATTTGATCAATTAAATAAATGACTTAGCTTATATTATGTGC
18804482 ATTATGTTTTGTTATTAAACCATAAAATTAAAACTATAAAGTTAAATAATAACACGTAGGCCAAG
586 ATTATGTTTTGTTATTAAACCATAAAATTAAAACTATAAAGTTAAATAATAACACGTAGGCCAAG
18804547 TGAGAGAATGTTAAATTTATGTATGTTACATGCAAGTTATTCAATATTAAATAAATATCTTTTAA
651 TGAGAGAATGTTAAATTTATGTATGTTACATGCAAGTTATTCAATATTAAATAAATATCTTTTAA
18804612 TTTTACTTAAAATATAAAATAGTTTAATGAATGTTATAAGTTAAAAAAAACTTATTAATCAAATA
716 TTTTACTTAAAATATAAAATAGTTTAATGAATGTTATAAGTTAAAAAAAACTTATTAATCAAATA
18804677 AAAAAGGGAGTTATTTTGTTAATGACTCATATTGACGGAATATGAGAATAAAAGCTATTAAATAT
781 AAAAAGGGAGTTATTTTGTTAATGACTCATATTGACGGAATATGAGAATAAAAGCTATTAAATAT
18804742 TATAAGTTTATTTATGAATGAATACTAACGC
846 TATAAGTTTATTTATGAATGAATACTAACGC
18804773 AAAAT
1 AAAAT
18804778 ACTCCTCTTT
Statistics
Matches: 878, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
875 616 0.70
876 262 0.30
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.38
Consensus pattern (876 bp):
AAAATTTATTGTGATAATGGCGCAACAGTTTTTTTTTTCTAAAAACAGGTATGCGAAAGGTGTTA
AACACATGAAATTAAAATATTTTACCATTAAAGAAAAAGTTTAGAAACAAAAAGTGTCAATTGAA
TATATTAACACCAATCTTATGGTTACAGATCCATTAACAAAAAGTTTACCACTAAAGACATTTAA
TGAACATGTTGAAAGAATGGGCATTATTTATTGAAAATTATTATTAACATTATGATACAATTTTA
TGGTTTTTTTTATAAATTTGACATTTTGAGCTCTTTTAAGTACTATTTTTGATATATTAACACAT
CATGTTTCATTATGTTAGTATATACATATGATTGAGTTATGTAAATGTGAACAAAATTTATCTTT
AACAAAGATATTATTGTTCGAACATTATGATGTTCTCATTATAGATTATGTTGAGTATAAAACTA
AAATTATGATACCTAAAAAAGATTATGTAAAGTTAATGACATGCAATTGTTATGATTTTTATTAG
TTTTATACTAAATGATGATTTATGATTTGATCAATTAAATAAATGACTTAGCTTATATTATGTGC
ATTATGTTTTGTTATTAAACCATAAAATTAAAACTATAAAGTTAAATAATAACACGTAGGCCAAG
TGAGAGAATGTTAAATTTATGTATGTTACATGCAAGTTATTCAATATTAAATAAATATCTTTTAA
TTTTACTTAAAATATAAAATAGTTTAATGAATGTTATAAGTTAAAAAAAACTTATTAATCAAATA
AAAAAGGGAGTTATTTTGTTAATGACTCATATTGACGGAATATGAGAATAAAAGCTATTAAATAT
TATAAGTTTATTTATGAATGAATACTAACGC
Found at i:18806178 original size:47 final size:47
Alignment explanation
Indices: 18806124--18806217 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 47
18806114 ATAGAATCTA
*
18806124 TGACAACCAAGT-TTAATAACCAACAATGATTTTGAAATGAAAAAAAT
1 TGACAACCAA-TCTTAATAACCAACAATGAATTTGAAATGAAAAAAAT
* * *
18806171 TGACAACCAATCTTCATAACTAATAATGAATTTGAAATGAAAAAAAT
1 TGACAACCAATCTTAATAACCAACAATGAATTTGAAATGAAAAAAAT
18806218 GCCATTGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.02
47 41 0.98
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.27
Consensus pattern (47 bp):
TGACAACCAATCTTAATAACCAACAATGAATTTGAAATGAAAAAAAT
Found at i:18807290 original size:106 final size:105
Alignment explanation
Indices: 18807087--18807300 Score: 338
Period size: 106 Copynumber: 2.0 Consensus size: 105
18807077 AAACCTCCAA
* * *
18807087 TTGACATATCATAATGTTTTTGAGATCATAAAGCTTTTTTTAAAGCTTTAAAGAATGAATCATGA
1 TTGACATATCATAATGTTTTTGAGATCATAAAGCTTTTTTTAAAACTCTAAAAAATGAATCATGA
* * *
18807152 CATTATTAAATATTATTGAAAACTTTGGAGCATTATCATG
66 CATTATTAAACATCATTGAAAACTTTGAAGCATTATCATG
* * *
18807192 TTGACATATGATAATGTTTTTGAGATCATAAAGTTTTTTTTAAAAACTCTAAAAAATTAATCATG
1 TTGACATATCATAATGTTTTTGAGATCATAAAGCTTTTTTT-AAAACTCTAAAAAATGAATCATG
18807257 ACATTATTAAACATCATTGAAAACTTTGAAGCATTATCATG
65 ACATTATTAAACATCATTGAAAACTTTGAAGCATTATCATG
18807298 TTG
1 TTG
18807301 TTCAACCAAG
Statistics
Matches: 99, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
105 39 0.39
106 60 0.61
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (105 bp):
TTGACATATCATAATGTTTTTGAGATCATAAAGCTTTTTTTAAAACTCTAAAAAATGAATCATGA
CATTATTAAACATCATTGAAAACTTTGAAGCATTATCATG
Found at i:18820388 original size:7 final size:7
Alignment explanation
Indices: 18820373--18820428 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
18820363 AGCAGGAAGG
18820373 AGAAA-A
1 AGAAAGA
18820379 AGAAAGA
1 AGAAAGA
*
18820386 AG--AGT
1 AGAAAGA
18820391 A-AAAGA
1 AGAAAGA
18820397 AGAAA-A
1 AGAAAGA
18820403 AGAAAGA
1 AGAAAGA
*
18820410 TGAAAGA
1 AGAAAGA
18820417 AGAAAGA
1 AGAAAGA
18820424 AGAAA
1 AGAAA
18820429 AGAAAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 14 0.34
7 24 0.59
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (7 bp):
AGAAAGA
Found at i:18820406 original size:20 final size:20
Alignment explanation
Indices: 18820381--18820450 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
18820371 GGAGAAAAAG
18820381 AAAGAAGAGTAAAAGAAGAA
1 AAAGAAGAGTAAAAGAAGAA
*
18820401 AAAGAA-AGATGAAAGAAGAA
1 AAAGAAGAG-TAAAAGAAGAA
* * *
18820421 AGAAGAAAAGAAAACAAAAGAA
1 A-AAGAAGAGTAAA-AGAAGAA
18820443 AAA-AAGAG
1 AAAGAAGAG
18820451 GGAAAAAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
19 2 0.05
20 21 0.51
21 9 0.22
22 9 0.22
ACGTcount: A:0.73, C:0.01, G:0.23, T:0.03
Consensus pattern (20 bp):
AAAGAAGAGTAAAAGAAGAA
Found at i:18820423 original size:24 final size:23
Alignment explanation
Indices: 18820373--18820449 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 23
18820363 AGCAGGAAGG
18820373 AGAAAAAGAAAGAAGAGTAAAAGA
1 AGAAAAAGAAAGAAGAG-AAAAGA
*
18820397 AGAAAAAGAAAG-A-TG-AAAGA
1 AGAAAAAGAAAGAAGAGAAAAGA
* *
18820417 AGAAAGAAGAAAAGAAAACAAAAGA
1 AGAAA-AAG-AAAGAAGAGAAAAGA
18820442 A-AAAAAGA
1 AGAAAAAGA
18820450 GGGAAAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
20 10 0.22
21 3 0.07
22 6 0.13
23 5 0.11
24 15 0.33
25 6 0.13
ACGTcount: A:0.74, C:0.01, G:0.22, T:0.03
Consensus pattern (23 bp):
AGAAAAAGAAAGAAGAGAAAAGA
Found at i:18820430 original size:35 final size:38
Alignment explanation
Indices: 18820374--18820443 Score: 94
Period size: 36 Copynumber: 1.9 Consensus size: 38
18820364 GCAGGAAGGA
*
18820374 GAAAAAGAAAGAAGAGTAAAAGAAGA-AAAAGAAAGAT
1 GAAAAAGAAAGAAGAGTAAAAGAAAACAAAAGAAAGAT
18820411 GAAAGAAGAAAG-A-AG-AAAAGAAAACAAAAGAAA
1 GAAA-AAGAAAGAAGAGTAAAAGAAAACAAAAGAAA
18820444 AAAAGAGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 8 0.27
36 10 0.33
37 5 0.17
38 7 0.23
ACGTcount: A:0.73, C:0.01, G:0.23, T:0.03
Consensus pattern (38 bp):
GAAAAAGAAAGAAGAGTAAAAGAAAACAAAAGAAAGAT
Found at i:18828636 original size:25 final size:25
Alignment explanation
Indices: 18828608--18828656 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
18828598 GGATGTAGAA
18828608 ATCTGATTCTCCTACATTAGTGCAT
1 ATCTGATTCTCCTACATTAGTGCAT
**
18828633 ATCTGATTCTTTTACATTAGTGCA
1 ATCTGATTCTCCTACATTAGTGCA
18828657 GCTTGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.43
Consensus pattern (25 bp):
ATCTGATTCTCCTACATTAGTGCAT
Found at i:18833646 original size:11 final size:11
Alignment explanation
Indices: 18833630--18833656 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
18833620 AATAAAAAAC
18833630 CACTTTTATTT
1 CACTTTTATTT
18833641 CACTTTTATTT
1 CACTTTTATTT
18833652 CACTT
1 CACTT
18833657 GTGGTGTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (11 bp):
CACTTTTATTT
Found at i:18837794 original size:23 final size:23
Alignment explanation
Indices: 18837768--18837814 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
18837758 CCCTTTTGCT
*
18837768 TATTTCTTCTTTATTAAGGAAAG
1 TATTTCTTCTTTATCAAGGAAAG
18837791 TATTTCTTCTTTATCAAGGAAAG
1 TATTTCTTCTTTATCAAGGAAAG
18837814 T
1 T
18837815 GCTAATACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.47
Consensus pattern (23 bp):
TATTTCTTCTTTATCAAGGAAAG
Found at i:18849932 original size:12 final size:13
Alignment explanation
Indices: 18849895--18849932 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
18849885 CCCCCCGCCC
*
18849895 CCAAAAAAAAAAA
1 CCAAAAAAAAATA
*
18849908 CCAAAAAAGAATA
1 CCAAAAAAAAATA
18849921 -CAAAAAAAAATA
1 CCAAAAAAAAATA
18849933 GAACTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.79, C:0.13, G:0.03, T:0.05
Consensus pattern (13 bp):
CCAAAAAAAAATA
Found at i:18862259 original size:22 final size:22
Alignment explanation
Indices: 18862233--18862276 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
18862223 TGTATATTTA
*
18862233 TATTTGTATCTCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
*
18862255 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
18862277 GAAGATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:18866154 original size:22 final size:22
Alignment explanation
Indices: 18866128--18866171 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
18866118 TGTATATTTA
*
18866128 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
18866150 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
18866172 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:18868854 original size:94 final size:94
Alignment explanation
Indices: 18868674--18868876 Score: 336
Period size: 94 Copynumber: 2.2 Consensus size: 94
18868664 AGATAGAATG
* * *
18868674 AACTCAAATT-GAACTAAAACAACATATATCTACAAGTTTACTACCTAGATCAACAAAGAAATCA
1 AACTCAAATTCAAACCAAAACAACATAGATCTACAAGTTTACTACCTAGATCAACAAAGAAATCA
*
18868738 CATGAATAAACTAAAAATTCAGCTCATTA
66 CATGAATAAACTAAAAACTCAGCTCATTA
* *
18868767 AACTCAAATTCAAACCAAGACAACATAGATCTGCAAGTTTACTACCTAGATCAACAAAGAAATCA
1 AACTCAAATTCAAACCAAAACAACATAGATCTACAAGTTTACTACCTAGATCAACAAAGAAATCA
*
18868832 CATGAATCAACTAAAAACTCAGCTCATTA
66 CATGAATAAACTAAAAACTCAGCTCATTA
18868861 AACTCAAATTCAAACC
1 AACTCAAATTCAAACC
18868877 GAATGTAAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
93 10 0.10
94 92 0.90
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.23
Consensus pattern (94 bp):
AACTCAAATTCAAACCAAAACAACATAGATCTACAAGTTTACTACCTAGATCAACAAAGAAATCA
CATGAATAAACTAAAAACTCAGCTCATTA
Found at i:18876888 original size:22 final size:20
Alignment explanation
Indices: 18876858--18876902 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
18876848 TTGAAAACTT
18876858 AAAGATCTTGAACA-TTTATTG
1 AAAGATCTT-AA-AGTTTATTG
18876879 AAAGAATCTTAAAGTTTATTG
1 AAAG-ATCTTAAAGTTTATTG
18876900 AAA
1 AAA
18876903 AGAGAAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 16 0.73
22 5 0.23
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (20 bp):
AAAGATCTTAAAGTTTATTG
Found at i:18879368 original size:24 final size:24
Alignment explanation
Indices: 18879328--18879374 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
18879318 AAGATTTATT
*
18879328 ATAACATTGCTTCTAAATAATAAA
1 ATAACATTGCTTATAAATAATAAA
*
18879352 ATAACATT-CTTTATAAATGATAA
1 ATAACATTGC-TTATAAATAATAA
18879375 TCATTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (24 bp):
ATAACATTGCTTATAAATAATAAA
Found at i:18881197 original size:22 final size:22
Alignment explanation
Indices: 18881170--18881212 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
18881160 CCAAAATATC
18881170 TTTAAAAGATTAAAAATAGGCA
1 TTTAAAAGATTAAAAATAGGCA
18881192 TTTAAAAGATTAAAAATAGGC
1 TTTAAAAGATTAAAAATAGGC
18881213 CAAAGTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (22 bp):
TTTAAAAGATTAAAAATAGGCA
Found at i:18882206 original size:10 final size:11
Alignment explanation
Indices: 18882185--18882219 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
18882175 TTTTTGTATG
18882185 TTTGTATTTTT
1 TTTGTATTTTT
18882196 TTTGT-TTTTT
1 TTTGTATTTTT
18882206 TTTGTATTTTT
1 TTTGTATTTTT
18882217 TTT
1 TTT
18882220 ATTTTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.86
Consensus pattern (11 bp):
TTTGTATTTTT
Found at i:18882209 original size:21 final size:21
Alignment explanation
Indices: 18882185--18882225 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
18882175 TTTTTGTATG
*
18882185 TTTGTATTTTTTTTGTTTTTT
1 TTTGTATTTTTTTTATTTTTT
18882206 TTTGTATTTTTTTTATTTTT
1 TTTGTATTTTTTTTATTTTT
18882226 GAAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (21 bp):
TTTGTATTTTTTTTATTTTTT
Found at i:18882225 original size:10 final size:10
Alignment explanation
Indices: 18882185--18882225 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
18882175 TTTTTGTATG
18882185 TTTGTATTTTT
1 TTTGT-TTTTT
18882196 TTTGTTTTTT
1 TTTGTTTTTT
18882206 TTTGTATTTTT
1 TTTGT-TTTTT
*
18882217 TTTATTTTT
1 TTTGTTTTT
18882226 GAAAAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 14 0.50
11 14 0.50
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (10 bp):
TTTGTTTTTT
Found at i:18882326 original size:37 final size:37
Alignment explanation
Indices: 18882227--18882327 Score: 109
Period size: 37 Copynumber: 2.7 Consensus size: 37
18882217 TTTATTTTTG
* *
18882227 AAAAATAAAGAATGACTAAGACATCA-CTTCAAGTTAA
1 AAAAATAAAG-ATGACTAAGACAACACCGTCAAGTTAA
* * *
18882264 AAAAATAAAGATGA-TCAGGATAACACCGT-AGGTTGAA
1 AAAAATAAAGATGACT-AAGACAACACCGTCAAGTT-AA
18882301 AAAAATAAAGATGACTAAGACAACACC
1 AAAAATAAAGATGACTAAGACAACACC
18882328 AATGGTTGGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
35 1 0.02
36 14 0.26
37 37 0.70
38 1 0.02
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.18
Consensus pattern (37 bp):
AAAAATAAAGATGACTAAGACAACACCGTCAAGTTAA
Found at i:18882335 original size:37 final size:37
Alignment explanation
Indices: 18882227--18882360 Score: 102
Period size: 37 Copynumber: 3.6 Consensus size: 37
18882217 TTTATTTTTG
*
18882227 AAAAATAAAGAATGACTAAGACATCACTTCAA--GTT-AA
1 AAAAATAAAG-ATGACTAAGACAACAC--CAATGGTTGAA
* * *
18882264 AAAAATAAAGATGA-TCAGGATAACACC-GTAGGTTGAA
1 AAAAATAAAGATGACT-AAGACAACACCAAT-GGTTGAA
*
18882301 AAAAATAAAGATGACTAAGACAACACCAATGGTTG-G
1 AAAAATAAAGATGACTAAGACAACACCAATGGTTGAA
* *
18882337 GAAGATAAAGATGAC-AAGGACAAC
1 AAAAATAAAGATGACTAA-GACAAC
18882361 GTTAACACTA
Statistics
Matches: 79, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
34 1 0.01
35 3 0.04
36 33 0.42
37 40 0.51
38 2 0.03
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.17
Consensus pattern (37 bp):
AAAAATAAAGATGACTAAGACAACACCAATGGTTGAA
Found at i:18882411 original size:35 final size:37
Alignment explanation
Indices: 18882371--18882461 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 37
18882361 GTTAACACTA
*
18882371 AAGAAAACAAATATGATCAGA-ACAACACCACA-GGTT
1 AAGAAAACAAATATGATCAGAGACAACACCA-ATGATT
* * *
18882407 -AGAAAATAGAGATGATCA-AGACAACACCAATGATT
1 AAGAAAACAAATATGATCAGAGACAACACCAATGATT
*
18882442 AAAAAAACAAATATGATCAG
1 AAGAAAACAAATATGATCAG
18882462 GATAATGCCG
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
34 2 0.05
35 27 0.63
36 14 0.33
ACGTcount: A:0.55, C:0.15, G:0.14, T:0.15
Consensus pattern (37 bp):
AAGAAAACAAATATGATCAGAGACAACACCAATGATT
Found at i:18882526 original size:106 final size:107
Alignment explanation
Indices: 18882374--18882654 Score: 307
Period size: 106 Copynumber: 2.6 Consensus size: 107
18882364 AACACTAAAG
* * * * * * * * *
18882374 AAAACAAATATGATCAGAACAACACCACAGGTTAGAAAATAGAGATGATCAAGACAACACCAATG
1 AAAATAAAGATGATCGGGACAACACCGCAAGTTAAAAAATAAAGATGATCAAGATAACACCAATG
* *
18882439 ATTAAAAAAACAAATATGATC-AGGATAATGCCGCTAG-TCAA
66 ATTAAAAAAACAAATATGATCGA-GATAATACCGCAAGTTCAA
* * * *
18882480 AAAATAAAGATGATCGGGACAACACTGCAAGTTATAAAATAAAGATGA-CTAGGATAACACCAAC
1 AAAATAAAGATGATCGGGACAACACCGCAAGTTAAAAAATAAAGATGATC-AAGATAACACCAAT
* * * **
18882544 GGTTAGAAAAATAAATATGATCGAGATAATATTGCAAGTTCAA
65 GATTAAAAAAACAAATATGATCGAGATAATACCGCAAGTTCAA
* **
18882587 AAAATAAAGATGATCGGGACAACACCGCAAGTGAAAAAAATAAAGATGATTGAGATAACACCAAT
1 AAAATAAAGATGATCGGGACAACACCGCAAGT-TAAAAAATAAAGATGATCAAGATAACACCAAT
18882652 GAT
65 GAT
18882655 CAGGAGGTAA
Statistics
Matches: 143, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
105 1 0.01
106 79 0.55
107 36 0.25
108 27 0.19
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (107 bp):
AAAATAAAGATGATCGGGACAACACCGCAAGTTAAAAAATAAAGATGATCAAGATAACACCAATG
ATTAAAAAAACAAATATGATCGAGATAATACCGCAAGTTCAA
Found at i:18882590 original size:36 final size:36
Alignment explanation
Indices: 18882478--18882648 Score: 134
Period size: 36 Copynumber: 4.8 Consensus size: 36
18882468 GCCGCTAGTC
* * * *
18882478 AAAAAATAAAGATGATCGGGACAACACTGCAAGT-T
1 AAAAAATAAAGATGATCGAGATAACACCGCAAGTGA
* * *
18882513 ATAAAATAAAGATGA-CTAGGATAACA-C-CAACGGTTA
1 AAAAAATAAAGATGATCGA-GATAACACCGCAA--GTGA
* * * ** **
18882549 GAAAAATAAATATGATCGAGATAATATTGCAAGTTC
1 AAAAAATAAAGATGATCGAGATAACACCGCAAGTGA
* *
18882585 AAAAAATAAAGATGATCGGGACAACACCGCAAGTGA
1 AAAAAATAAAGATGATCGAGATAACACCGCAAGTGA
*
18882621 AAAAAATAAAGATGATTGAGATAACACC
1 AAAAAATAAAGATGATCGAGATAACACC
18882649 AATGATCAGG
Statistics
Matches: 104, Mismatches: 25, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
33 3 0.03
34 1 0.01
35 22 0.21
36 73 0.70
37 2 0.02
38 3 0.03
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (36 bp):
AAAAAATAAAGATGATCGAGATAACACCGCAAGTGA
Found at i:18882671 original size:107 final size:107
Alignment explanation
Indices: 18882476--18882678 Score: 275
Period size: 107 Copynumber: 1.9 Consensus size: 107
18882466 ATGCCGCTAG
* * *
18882476 TCAAAAAATAAAGATGATCGGGACAACACTGCAAGTTATAAAATAAAGATGACTAGGATAACACC
1 TCAAAAAATAAAGATGATCGGGACAACACCGCAAGTAAAAAAATAAAGATGACTAGGATAACACC
* * *
18882541 AACGGTTAGAAAAATAAATATGATCGAGATAATATTGCAAGT
66 AACGATCAGAAAAATAAAGATGATCGAGATAATATTGCAAGT
*
18882583 TCAAAAAATAAAGATGATCGGGACAACACCGCAAGTGAAAAAAATAAAGATGA-TTGAGATAACA
1 TCAAAAAATAAAGATGATCGGGACAACACCGCAAGT-AAAAAAATAAAGATGACTAG-GATAACA
* * **
18882647 CCAATGATCAG-GAGGTAAAGATGATCGAGATA
64 CCAACGATCAGAAAAATAAAGATGATCGAGATA
18882679 CAACACCAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 54 0.65
108 29 0.35
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.19
Consensus pattern (107 bp):
TCAAAAAATAAAGATGATCGGGACAACACCGCAAGTAAAAAAATAAAGATGACTAGGATAACACC
AACGATCAGAAAAATAAAGATGATCGAGATAATATTGCAAGT
Found at i:18882804 original size:36 final size:35
Alignment explanation
Indices: 18882763--18882969 Score: 140
Period size: 36 Copynumber: 5.9 Consensus size: 35
18882753 ACTATAGGTC
*
18882763 AAAAAATAAAGATGATCAAGACAACACCAACGGTTG
1 AAAAAATAAAGATGATCAAGACAACACCAA-GGTTA
* * * *
18882799 GAAAAATGAATATGATCGAA-ACAACACCGTAA-G-TC
1 AAAAAATAAAGATGATC-AAGACAACACC--AAGGTTA
* * * *
18882834 AAAAAATAAAG-TGA-CTAGGACAATACCAACGATTG
1 AAAAAATAAAGATGATC-AAGACAACACCAA-GGTTA
*
18882869 AAAAAATAAATATGATCAAGACAACATCACAA-G-TA
1 AAAAAATAAAGATGATCAAGACAACA-C-CAAGGTTA
* * * *
18882904 AGAAAATAAAGATGATCGAGATAACACTATAGGTTA
1 AAAAAATAAAGATGATCAAGACAACACCA-AGGTTA
* *
18882940 AAAAAATAAAAATGATCAGGACAACACCAA
1 AAAAAATAAAGATGATCAAGACAACACCAA
18882970 CGATCAGAAA
Statistics
Matches: 129, Mismatches: 28, Indels: 29
0.69 0.15 0.16
Matches are distributed among these distances:
32 2 0.02
33 3 0.02
34 12 0.09
35 45 0.35
36 58 0.45
37 4 0.03
38 5 0.04
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.16
Consensus pattern (35 bp):
AAAAAATAAAGATGATCAAGACAACACCAAGGTTA
Found at i:18882838 original size:70 final size:71
Alignment explanation
Indices: 18882763--18882968 Score: 204
Period size: 70 Copynumber: 2.9 Consensus size: 71
18882753 ACTATAGGTC
* * *
18882763 AAAAAATAAAGATGATCAAGACAACACCAACGGTTGGAAAAATGAATATGATCGAA-ACAACACC
1 AAAAAATAAAGATGATCAAGACAACACCAACGATTGAAAAAATAAATATGATC-AAGACAACACC
** *
18882827 GTAAGTC
65 ACAAGTA
* * *
18882834 AAAAAATAAAG-TGA-CTAGGACAATACCAACGATTGAAAAAATAAATATGATCAAGACAACATC
1 AAAAAATAAAGATGATC-AAGACAACACCAACGATTGAAAAAATAAATATGATCAAGACAACACC
18882897 ACAAGTA
65 ACAAGTA
* * * * * * * *
18882904 AGAAAATAAAGATGATCGAGATAACACTATA-GGTTAAAAAAATAAAAATGATCAGGACAACACC
1 AAAAAATAAAGATGATCAAGACAACACCA-ACGATTGAAAAAATAAATATGATCAAGACAACACC
18882968 A
65 A
18882969 ACGATCAGAA
Statistics
Matches: 110, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
69 3 0.03
70 55 0.50
71 50 0.45
72 2 0.02
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.17
Consensus pattern (71 bp):
AAAAAATAAAGATGATCAAGACAACACCAACGATTGAAAAAATAAATATGATCAAGACAACACCA
CAAGTA
Found at i:18882910 original size:35 final size:36
Alignment explanation
Indices: 18882869--18882966 Score: 101
Period size: 35 Copynumber: 2.8 Consensus size: 36
18882859 CCAACGATTG
*
18882869 AAAAAATAAATATGATCAAGACAACA-TCACAAG-TA
1 AAAAAATAAAAATGATCAAGACAACACT-ACAAGTTA
* * * * * *
18882904 AGAAAATAAAGATGATCGAGATAACACTATAGGTTA
1 AAAAAATAAAAATGATCAAGACAACACTACAAGTTA
*
18882940 AAAAAATAAAAATGATCAGGACAACAC
1 AAAAAATAAAAATGATCAAGACAACAC
18882967 CAACGATCAG
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
35 25 0.50
36 25 0.50
ACGTcount: A:0.57, C:0.12, G:0.13, T:0.17
Consensus pattern (36 bp):
AAAAAATAAAAATGATCAAGACAACACTACAAGTTA
Found at i:18882988 original size:107 final size:107
Alignment explanation
Indices: 18882834--18883064 Score: 247
Period size: 107 Copynumber: 2.1 Consensus size: 107
18882824 ACCGTAAGTC
* * *
18882834 AAAAAATAAAGTGACTAGGACAATACCAACGATTGAAAAAATAAATATGA-TCAAGACAACATCA
1 AAAAAATAAAATGACTAGGACAACACCAACGATAGAAAAAATAAATATGACT-AAGACAACATCA
* * *
18882898 CAAGTAAGAAAA-TAAAGATGATCGAGATAACACTATAGGTTA
65 CAAGTAAAAAAATTAAAGATGACCAAGATAACACTATAGGTTA
* ** *
18882940 AAAAAATAAAAATGA-TCAGGACAACACCAACGATCAG-AAAAATGAATATGACTGGGACCACAT
1 AAAAAAT-AAAATGACT-AGGACAACACCAACGAT-AGAAAAAATAAATATGACTAAGACAACAT
* * *
18883003 TACAAGTAAAAAAATTAAAGATGACCAAGATAACACCA-ATGGTCA
63 CACAAGTAAAAAAATTAAAGATGACCAAGATAACACTATA-GGTTA
*
18883048 AAAAACTAAATATGACT
1 AAAAAATAAA-ATGACT
18883065 GGGATAATAC
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
106 8 0.08
107 58 0.56
108 36 0.35
109 1 0.01
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.18
Consensus pattern (107 bp):
AAAAAATAAAATGACTAGGACAACACCAACGATAGAAAAAATAAATATGACTAAGACAACATCAC
AAGTAAAAAAATTAAAGATGACCAAGATAACACTATAGGTTA
Found at i:18883051 original size:36 final size:36
Alignment explanation
Indices: 18883011--18883081 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
18883001 ATTACAAGTA
*
18883011 AAAAAATTAAAGATGACCAAGATAACACCAATGGTC
1 AAAAAACTAAAGATGACCAAGATAACACCAATGGTC
* *** *
18883047 AAAAAACTAAATATGACTGGGATAATACCAATGGT
1 AAAAAACTAAAGATGACCAAGATAACACCAATGGT
18883082 TAGAAAGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (36 bp):
AAAAAACTAAAGATGACCAAGATAACACCAATGGTC
Found at i:18883254 original size:72 final size:71
Alignment explanation
Indices: 18883176--18883351 Score: 171
Period size: 71 Copynumber: 2.5 Consensus size: 71
18883166 TGATCGGGAT
*
18883176 AACACCAACGATTGAAAAGATAAAGATGATTAGGACAACACCAATGGTTAGAAAA-ATGAATATA
1 AACACCAACGATTGAAAAGATAAAGATGATTAGGACAACACCAATGG-TAGAAAAGAT-AAGATA
18883240 ACT-AGGAC
64 ACTGA-GAC
* * * * ** * * *
18883248 ATCACCAATGA-TCAAGATA-ATAAAGATGATTGGGACAATGCTAATGGTCGAAAAGATAAGATG
1 AACACCAACGATTGAA-A-AGATAAAGATGATTAGGACAACACCAATGGTAGAAAAGATAAGATA
18883311 ACTGAGAC
64 ACTGAGAC
* *
18883319 AACACCAACGATCGAAAAGATAAAAATGATTAG
1 AACACCAACGATTGAAAAGATAAAGATGATTAG
18883352 ATGATCAAGA
Statistics
Matches: 82, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
70 1 0.01
71 41 0.50
72 39 0.48
73 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (71 bp):
AACACCAACGATTGAAAAGATAAAGATGATTAGGACAACACCAATGGTAGAAAAGATAAGATAAC
TGAGAC
Found at i:18883895 original size:26 final size:27
Alignment explanation
Indices: 18883828--18883897 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
18883818 GATACAAATA
*
18883828 ATGTAAATACGAATGTCTTTTACAGGTG
1 ATGTAAATGCGAATGTCTTTTACA-GTG
* * * *
18883856 ATGCAACTGTGAATGTCTTTTTCA-TG
1 ATGTAAATGCGAATGTCTTTTACAGTG
18883882 ATGTAAATGCGAATGT
1 ATGTAAATGCGAATGT
18883898 GAATTTTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 15 0.44
28 19 0.56
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
ATGTAAATGCGAATGTCTTTTACAGTG
Found at i:18884243 original size:80 final size:80
Alignment explanation
Indices: 18884101--18884292 Score: 228
Period size: 80 Copynumber: 2.4 Consensus size: 80
18884091 TGAATGTGTA
* * ** * * *
18884101 TCTTTTTTTTTTTGCAACATACAGTTCAAAT-TCTT-TTTTATGATGCATATGTAAGGATAAGTG
1 TCTTTTTGTTTTTGCAACATGCAAATCAAATGT-TTCTATTATGATGCACATGTAAGGACAAGTG
**
18884164 ATGTGAATACGAAGAC
65 ATGCAAATACGAAGAC
*
18884180 TCTTTTTGTTTTTGTAACATGCAAATCAAATGTTTCTATTATGATGCACATGTAAGTG-CAAGTG
1 TCTTTTTGTTTTTGCAACATGCAAATCAAATGTTTCTATTATGATGCACATGTAAG-GACAAGTG
**
18884244 ATGCAAATGTGAAGAC
65 ATGCAAATACGAAGAC
*
18884260 TCTTTTTGTTTTTGCAACATGTAAATCAAATGT
1 TCTTTTTGTTTTTGCAACATGCAAATCAAATGT
18884293 CTTTCTTAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
79 28 0.29
80 67 0.70
81 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (80 bp):
TCTTTTTGTTTTTGCAACATGCAAATCAAATGTTTCTATTATGATGCACATGTAAGGACAAGTGA
TGCAAATACGAAGAC
Found at i:18893318 original size:3 final size:3
Alignment explanation
Indices: 18893312--18893369 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
18893302 ATCATCATTG
* *
18893312 TTA TTA TTG CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
18893360 TTA TTA TTA T
1 TTA TTA TTA T
18893370 AGATAACTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:18895001 original size:20 final size:19
Alignment explanation
Indices: 18894977--18895025 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
18894967 AAGTTTTGTG
18894977 CAATTTTGACTTTGTTTGAC
1 CAATTTTGACTTTG-TTGAC
* *
18894997 TAATTTTAACTTTGTTGAC
1 CAATTTTGACTTTGTTGAC
*
18895016 CAAGTTTGAC
1 CAATTTTGAC
18895026 CAAATTTGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.47
Consensus pattern (19 bp):
CAATTTTGACTTTGTTGAC
Found at i:18921481 original size:22 final size:22
Alignment explanation
Indices: 18921441--18921492 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
18921431 TCCAATTTCA
*
18921441 ATTCAAGTTTTTTGTAAGTTAT
1 ATTCAAGTTTTTTGAAAGTTAT
*
18921463 ATTCAAGTTTTGTT-AAAGTTCT
1 ATTCAAGTTTT-TTGAAAGTTAT
*
18921485 ACTCAAGT
1 ATTCAAGT
18921493 CAAATTCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (22 bp):
ATTCAAGTTTTTTGAAAGTTAT
Found at i:18922763 original size:18 final size:19
Alignment explanation
Indices: 18922730--18922772 Score: 63
Period size: 17 Copynumber: 2.3 Consensus size: 19
18922720 ATTGGCTTTA
18922730 GGGTTTAAAGGTTGGTTTTG
1 GGGTTTAAAGGTTGG-TTTG
18922750 GGGTTT-AA-GTTGGTTTG
1 GGGTTTAAAGGTTGGTTTG
18922767 GGGTTT
1 GGGTTT
18922773 GGTTTGGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
18 5 0.22
19 2 0.09
20 6 0.26
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.47
Consensus pattern (19 bp):
GGGTTTAAAGGTTGGTTTG
Found at i:18922792 original size:7 final size:7
Alignment explanation
Indices: 18922761--18922983 Score: 167
Period size: 7 Copynumber: 32.6 Consensus size: 7
18922751 GGTTTAAGTT
*
18922761 GGTTTGG
1 GGTTTAG
18922768 GGTTT--
1 GGTTTAG
18922773 GGTTT-G
1 GGTTTAG
18922779 GGATTTAG
1 GG-TTTAG
*
18922787 AGTTTAG
1 GGTTTAG
*
18922794 GGTTTAA
1 GGTTTAG
18922801 GGTTTAG
1 GGTTTAG
18922808 GGATTTA-
1 GG-TTTAG
* *
18922815 AGTTTTG
1 GGTTTAG
18922822 GGTTTAG
1 GGTTTAG
18922829 GGTTTTA-
1 GG-TTTAG
18922836 GGTTTAG
1 GGTTTAG
18922843 GGTTTAG
1 GGTTTAG
* *
18922850 AGTTTAA
1 GGTTTAG
18922857 GGTTTAG
1 GGTTTAG
*
18922864 GGATTAG
1 GGTTTAG
*
18922871 AGTTTAG
1 GGTTTAG
18922878 GGTTTAG
1 GGTTTAG
18922885 GGTTTAG
1 GGTTTAG
18922892 GGTTTAG
1 GGTTTAG
18922899 GGTTTA-
1 GGTTTAG
*
18922905 TGTTTAG
1 GGTTTAG
* *
18922912 GATTCATG
1 GGTTTA-G
*
18922920 AG-TTAG
1 GGTTTAG
18922926 GG-TTAG
1 GGTTTAG
*
18922932 GATTTAG
1 GGTTTAG
18922939 GG-TTAG
1 GGTTTAG
*
18922945 GGTTTTG
1 GGTTTAG
*
18922952 GGTTTTG
1 GGTTTAG
*
18922959 TGTTTAG
1 GGTTTAG
* *
18922966 AGTTTAA
1 GGTTTAG
*
18922973 GGTTTAA
1 GGTTTAG
18922980 GGTT
1 GGTT
18922984 GGGAGCTTAA
Statistics
Matches: 173, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
5 5 0.03
6 27 0.16
7 130 0.75
8 11 0.06
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:18924176 original size:10 final size:10
Alignment explanation
Indices: 18924163--18924209 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
18924153 GTTGATGGAT
18924163 TTTGACCAAG
1 TTTGACCAAG
*
18924173 TTTGACTAAG
1 TTTGACCAAG
18924183 TTTGACCAAG
1 TTTGACCAAG
* *
18924193 TTTGATCAAA
1 TTTGACCAAG
18924203 TTTGACC
1 TTTGACC
18924210 TTGGCCCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (10 bp):
TTTGACCAAG
Found at i:18924508 original size:10 final size:10
Alignment explanation
Indices: 18924495--18924532 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
18924485 TTTTCCCTTC
18924495 TTTTTTTG--
1 TTTTTTTGTT
18924503 TTTTTTTGTT
1 TTTTTTTGTT
18924513 TTTTTTTGTT
1 TTTTTTTGTT
*
18924523 ATTTTTTGTT
1 TTTTTTTGTT
18924533 GTCTTTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 8 0.30
10 19 0.70
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.87
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:18925298 original size:10 final size:10
Alignment explanation
Indices: 18925280--18925392 Score: 68
Period size: 10 Copynumber: 10.8 Consensus size: 10
18925270 TCCTATGGCA
*
18925280 TTCTCTTTCT
1 TTCTTTTTCT
18925290 TTCTTTTTCT
1 TTCTTTTTCT
18925300 TTCTTTTTTCCT
1 TTC-TTTTT-CT
** *
18925312 CCACTTTTTTT
1 -TTCTTTTTCT
*
18925323 TTCTCTTTTTT
1 TTCT-TTTTCT
18925334 TTCTTCTTTCT
1 TTCTT-TTTCT
*
18925345 TCCTTTTT-T
1 TTCTTTTTCT
18925354 TTCCTTTTT-T
1 TT-CTTTTTCT
*
18925364 TTCTTTTTTT
1 TTCTTTTTCT
*
18925374 ATTCTTCTTCT
1 -TTCTTTTTCT
*
18925385 CTCTTTTT
1 TTCTTTTT
18925393 TATTCTCCCT
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
9 8 0.10
10 34 0.41
11 32 0.39
12 7 0.09
13 1 0.01
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (10 bp):
TTCTTTTTCT
Found at i:18925333 original size:9 final size:9
Alignment explanation
Indices: 18925318--18925428 Score: 69
Period size: 10 Copynumber: 11.2 Consensus size: 9
18925308 TCCTCCACTT
18925318 TTTTTTTCTC
1 TTTTTTT-TC
18925328 TTTTTTTTC
1 TTTTTTTTC
*
18925337 TTCTTTCTTCC
1 TT-TTT-TTTC
18925348 TTTTTTTTCC
1 TTTTTTTT-C
18925358 TTTTTTTTC
1 TTTTTTTTC
18925367 TTTTTTTATTC
1 -TTTTTT-TTC
* *
18925378 TTCTTCTCTC
1 TT-TTTTTTC
18925388 TTTTTTATTC
1 TTTTTT-TTC
** *
18925398 TCCCTTTTCC
1 T-TTTTTTTC
18925408 TTTTTTTTTC
1 -TTTTTTTTC
*
18925418 ATTTTTTTC
1 TTTTTTTTC
18925427 TT
1 TT
18925429 GTCTCTTAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
9 19 0.24
10 44 0.56
11 15 0.19
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:18925379 original size:34 final size:34
Alignment explanation
Indices: 18925288--18925380 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 34
18925278 CATTCTCTTT
* *
18925288 CTTTCTTTTTCTTTCTTTTTTCCTCCACTTTTTTTTT
1 CTTT-TTTTTCTTT-TTTTTT-CTTCACTTTTTTTTC
* * *
18925325 CTCTTTTTT-TTCTTCTTTCTTC-CTTTTTTTTC
1 CTTTTTTTTCTTTTTTTTTCTTCACTTTTTTTTC
18925357 CTTTTTTTTCTTTTTTTATTCTTC
1 CTTTTTTTTCTTTTTTT-TTCTTC
18925381 TTCTCTCTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
32 17 0.37
33 8 0.17
34 11 0.24
35 2 0.04
36 5 0.11
37 3 0.07
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (34 bp):
CTTTTTTTTCTTTTTTTTTCTTCACTTTTTTTTC
Found at i:18925425 original size:20 final size:19
Alignment explanation
Indices: 18925317--18925426 Score: 85
Period size: 20 Copynumber: 5.4 Consensus size: 19
18925307 TTCCTCCACT
*
18925317 TTTTTTTTCTCTTTTTTTTC
1 TTTTTTTCCT-TTTTTTTTC
*
18925337 TTCTTTCTTCCTTTTTTTTCC
1 TT-TTT-TTCCTTTTTTTTTC
*
18925358 TTTTTTTTCTTTTTTTATTC
1 TTTTTTTCCTTTTTTT-TTC
* * *
18925378 TTCTTCTCTCTTTTTTATTC
1 TTTTTTTC-CTTTTTTTTTC
**
18925398 TCCCTTTTCCTTTTTTTTTC
1 T-TTTTTTCCTTTTTTTTTC
18925418 ATTTTTTTC
1 -TTTTTTTC
18925427 TTGTCTCTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
19 10 0.14
20 31 0.44
21 26 0.37
22 4 0.06
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTTCCTTTTTTTTTC
Found at i:18925467 original size:12 final size:11
Alignment explanation
Indices: 18925450--18925500 Score: 61
Period size: 10 Copynumber: 4.7 Consensus size: 11
18925440 TAGGATATCA
18925450 CTTTTTTTCTAT
1 CTTTTTTTCT-T
18925462 CTTTTTTT-TT
1 CTTTTTTTCTT
*
18925472 CTCTTTTTCTT
1 CTTTTTTTCTT
*
18925483 TTTTTTTTCTT
1 CTTTTTTTCTT
18925494 -TTTTTTT
1 CTTTTTTT
18925501 GCTTTGCCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 15 0.43
11 12 0.34
12 8 0.23
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (11 bp):
CTTTTTTTCTT
Found at i:18925484 original size:17 final size:16
Alignment explanation
Indices: 18925463--18925500 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
18925453 TTTTTCTATC
18925463 TTTTTTTTTCTCTTTT
1 TTTTTTTTTCTCTTTT
*
18925479 TCTTTTTTTTTTCTTTT
1 T-TTTTTTTTCTCTTTT
18925496 TTTTT
1 TTTTT
18925501 GCTTTGCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTTTTTTCTCTTTT
Found at i:18925493 original size:11 final size:11
Alignment explanation
Indices: 18925451--18925505 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
18925441 AGGATATCAC
*
18925451 TTTTTTTCTATC
1 TTTTTTTCT-TT
*
18925463 TTTTTTT-TTC
1 TTTTTTTCTTT
*
18925473 TCTTTTTCTTT
1 TTTTTTTCTTT
18925484 TTTTTTTCTTT
1 TTTTTTTCTTT
*
18925495 TTTTTTGCTTT
1 TTTTTTTCTTT
18925506 GCCATAACTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
10 8 0.21
11 23 0.61
12 7 0.18
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:18926122 original size:7 final size:7
Alignment explanation
Indices: 18926110--18926145 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
18926100 ACAAACACAA
18926110 AATATGC
1 AATATGC
18926117 AATATGC
1 AATATGC
18926124 AATATGC
1 AATATGC
*
18926131 AACATGC
1 AATATGC
*
18926138 AACATGC
1 AATATGC
18926145 A
1 A
18926146 TTTTGGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.22
Consensus pattern (7 bp):
AATATGC
Found at i:18926955 original size:16 final size:15
Alignment explanation
Indices: 18926932--18926967 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
18926922 CATTCATCTC
18926932 TTTC-TCTCTTTTTT
1 TTTCTTCTCTTTTTT
18926946 TCTTCTTCTCTTTTTT
1 T-TTCTTCTCTTTTTT
18926962 TTTCTT
1 TTTCTT
18926968 TTTTTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 8 0.40
16 11 0.55
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTCTCTTTTTT
Found at i:18926956 original size:18 final size:18
Alignment explanation
Indices: 18926933--18926967 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18926923 ATTCATCTCT
18926933 TTCTCTCTTTTTTTCTTC
1 TTCTCTCTTTTTTTCTTC
*
18926951 TTCTCTTTTTTTTTCTT
1 TTCTCTCTTTTTTTCTT
18926968 TTTTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTCTCTCTTTTTTTCTTC
Found at i:18927348 original size:23 final size:23
Alignment explanation
Indices: 18927309--18927353 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
18927299 TTAATATTCA
* *
18927309 TTTCTTCTTGTTGTTTTATTTTC
1 TTTCTTCTTCTTCTTTTATTTTC
*
18927332 TTTCTTCTTCTTCTTTTCTTTT
1 TTTCTTCTTCTTCTTTTATTTT
18927354 GATCTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.76
Consensus pattern (23 bp):
TTTCTTCTTCTTCTTTTATTTTC
Found at i:18927405 original size:27 final size:27
Alignment explanation
Indices: 18927370--18927421 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 27
18927360 TTTTTTCTTT
18927370 TTTTCTCTTAT-TTGCTTCATTTTTTTCC
1 TTTTCTCTTATGTT-C-TCATTTTTTTCC
18927398 TTTT-TCTTATGTTCTCATTTTTTT
1 TTTTCTCTTATGTTCTCATTTTTTT
18927422 AGTGGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 10 0.43
27 7 0.30
28 6 0.26
ACGTcount: A:0.08, C:0.17, G:0.04, T:0.71
Consensus pattern (27 bp):
TTTTCTCTTATGTTCTCATTTTTTTCC
Found at i:18932295 original size:7 final size:7
Alignment explanation
Indices: 18932285--18932458 Score: 99
Period size: 7 Copynumber: 25.4 Consensus size: 7
18932275 CAAAATTGGT
18932285 TTTAGGG
1 TTTAGGG
18932292 TTTAAGGG
1 TTT-AGGG
*
18932300 -TT-GGT
1 TTTAGGG
*
18932305 TTTGGGG
1 TTTAGGG
18932312 TTT-GGG
1 TTTAGGG
18932318 TTT--GG
1 TTTAGGG
18932323 TTTAGGG
1 TTTAGGG
* *
18932330 TTTAAGA
1 TTTAGGG
18932337 TTTAGGG
1 TTTAGGG
**
18932344 TTGGGGG
1 TTTAGGG
* *
18932351 TTTAAGA
1 TTTAGGG
*
18932358 TTTAAGG
1 TTTAGGG
*
18932365 TTTAAGG
1 TTTAGGG
*
18932372 TTTTGGG
1 TTTAGGG
*
18932379 TTTTGGG
1 TTTAGGG
*
18932386 TTTTGGG
1 TTTAGGG
*
18932393 TTTTA-GA
1 -TTTAGGG
* *
18932400 TTTAAGA
1 TTTAGGG
*
18932407 TTTTGGG
1 TTTAGGG
18932414 TTTAGGG
1 TTTAGGG
*
18932421 TTTATGG
1 TTTAGGG
*
18932428 TTTAGGA
1 TTTAGGG
18932435 TTTAGGG
1 TTTAGGG
* *
18932442 TTCAGGA
1 TTTAGGG
18932449 TTTAGGG
1 TTTAGGG
18932456 TTT
1 TTT
18932459 CATCAAAATT
Statistics
Matches: 131, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
5 7 0.05
6 12 0.09
7 105 0.80
8 7 0.05
ACGTcount: A:0.16, C:0.01, G:0.36, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:18932324 original size:19 final size:19
Alignment explanation
Indices: 18932280--18932333 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
18932270 AAATGCAAAA
18932280 TTGGTTTTAGGGTTTAAGGG
1 TTGGTTTTAGGGTTT-AGGG
*
18932300 TTGGTTTTGGGGTTT-GGG
1 TTGGTTTTAGGGTTTAGGG
18932318 TTTGG-TTTAGGGTTTA
1 -TTGGTTTTAGGGTTTA
18932334 AGATTTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 14 0.47
ACGTcount: A:0.09, C:0.00, G:0.41, T:0.50
Consensus pattern (19 bp):
TTGGTTTTAGGGTTTAGGG
Found at i:18937335 original size:52 final size:52
Alignment explanation
Indices: 18937241--18937345 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
18937231 TACATATACA
*
18937241 TATCCTATATGTTTTATACCTTTTCAAATATACATATGCATATCTTGTATGT
1 TATCCTATATGTTTTATACCTTTTCAAATATACATATACATATCTTGTATGT
* **
18937293 TATCCTATATGTTTTATACCTTTTCATATATGTATATACATATCTTGTATGT
1 TATCCTATATGTTTTATACCTTTTCAAATATACATATACATATCTTGTATGT
18937345 T
1 T
18937346 TTTATGTTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.50
Consensus pattern (52 bp):
TATCCTATATGTTTTATACCTTTTCAAATATACATATACATATCTTGTATGT
Found at i:18942774 original size:35 final size:35
Alignment explanation
Indices: 18942728--18942797 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
18942718 ATCCAACCAG
18942728 ATGTCATTCAAGAATTTAGACAGAAATTCATTCAC
1 ATGTCATTCAAGAATTTAGACAGAAATTCATTCAC
18942763 ATGTCATTCAAGAATTTAGACAGAAATTCATTCAC
1 ATGTCATTCAAGAATTTAGACAGAAATTCATTCAC
18942798 TTTTTTTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (35 bp):
ATGTCATTCAAGAATTTAGACAGAAATTCATTCAC
Found at i:18947334 original size:20 final size:21
Alignment explanation
Indices: 18947294--18947335 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
18947284 GGGTTAGCAA
*
18947294 GATAGTTTCTTTTTATTTTGG
1 GATAGTTTCTATTTATTTTGG
*
18947315 GATAGTTTC-ATTTGTTTTGG
1 GATAGTTTCTATTTATTTTGG
18947335 G
1 G
18947336 TTATTGGTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.14, C:0.05, G:0.24, T:0.57
Consensus pattern (21 bp):
GATAGTTTCTATTTATTTTGG
Found at i:18952626 original size:105 final size:102
Alignment explanation
Indices: 18952447--18952653 Score: 369
Period size: 105 Copynumber: 2.0 Consensus size: 102
18952437 AGATTTTTCA
18952447 AGTGGTAGTCACTTTCATTTCTTTCTTTTTTTTTTTTTTTTTCAGGCTGATAACTAGAGTGAAAC
1 AGTGGTAGTCACTTTCATTTCTTTCTTTTTTTTTTTTTTTTTCAGGCTGATAACTAGAGTGAAAC
18952512 TAAATAGTACCTTGCCATTTGAGAATTGCACAATCCG
66 TAAATAGTACCTTGCCATTTGAGAATTGCACAATCCG
*
18952549 AGTGGTGGTCACTTTCATTTCTTTCTTTTTTTTTTTTTTTCTTTTCAGGCTGATAACTAGAGTGA
1 AGTGGTAGTCACTTTCATTTCTTTC--TTTTTTTTTTTTT-TTTTCAGGCTGATAACTAGAGTGA
*
18952614 AATTAAATAGTACCTTGCCATTTGAGAATTGCACAATCCG
63 AACTAAATAGTACCTTGCCATTTGAGAATTGCACAATCCG
18952654 CCGAGATGTT
Statistics
Matches: 100, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
102 24 0.24
104 13 0.13
105 63 0.63
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (102 bp):
AGTGGTAGTCACTTTCATTTCTTTCTTTTTTTTTTTTTTTTTCAGGCTGATAACTAGAGTGAAAC
TAAATAGTACCTTGCCATTTGAGAATTGCACAATCCG
Found at i:18954101 original size:15 final size:16
Alignment explanation
Indices: 18954071--18954105 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
18954061 AAATTAAATG
*
18954071 ATTATACATGAATTAA
1 ATTATACATAAATTAA
18954087 ATTATACA-AAATTAA
1 ATTATACATAAATTAA
18954102 ATTA
1 ATTA
18954106 ACTAATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTATACATAAATTAA
Done.