Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167859.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71500
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.26
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:1672 original size:26 final size:26
Alignment explanation
Indices: 1634--1686 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1624 GTTGACTTAG
1634 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
1660 GCATACGGCGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1686 G
1 G
1687 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2870 original size:856 final size:864
Alignment explanation
Indices: 889--3706 Score: 3447
Period size: 856 Copynumber: 3.2 Consensus size: 864
879 ATCGCTAGAG
* * * ** * *
889 CATCGTCGGAGAACCTGATCGGCAGCATCGGGG-TTCTGACGATTAGGGGGCGGGGGGGTGTGCA
1 CATCATCGGAGAACCTGATCGGCGGCATTGGGGTTTC-GGTGATTGGGGGGC-GGGGGGTGTGCG
* * * *
953 CACATGATATGCCATGGGTGCTGGTACTTTGGCCTTTATATTGGCCCGTATCCCTCATCAAACCT
64 CACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCTATCCCTCATCAAACC-
*
1018 TCGAGAACTCACATCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAA
127 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
1082 AGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
192 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
* * * *
1146 TGTATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGGACAAAACT
257 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
1211 CCTTCTG----AATTTTACAAAAATC-CTGAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGA
322 -C-TCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGA
*
1271 AAACGAGTCGTCTTGCCATGAAATTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
384 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
1336 CCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATC
449 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1401 GATCCACGGCTTGCACATCCCGCCTCTCTGG-CTGGCATAGTGCCCGCCC-CCCGCTCGTTTCGT
514 GATCCACGGCTTGCGCATCCCGCCTATCTGGCCT-GCATAGTGCCCGCCCACCCGCTCGTTTCAT
* * * * *
1464 CAGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTA
578 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTA
* * *
1529 GCAGGATTTG-CAGCACACAGGGGGGACCC-AGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTG
643 GTAGGA-TCGACAGCACACAGGGGGGACCCGACTCGATCCCCGGCTTGTGCATCCTGCCCCTCTG
* *
1592 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT----ATAC--AG-----T--CA--C
* * * *
1657 TAAGCATACGGCGTTCATTCCCAGTGTAAGATCG-GATCAGACCGAGGGTTACGGGTGCACATGC
757 T-A--AT-CGGAGTTCATTCCCAGTGTAAGATCGAGACCAGACCAAGGGTTGCGGGTGCACATGC
* *
1721 TGGGCTCAGGCATGTGCTGATGCCGCATTCTTTTTCGCCCAGGGCAC
818 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCAC
* * * * ** * *
1768 CATCGTCGGAGAACCTGACCGGCGGTATTAGGG-TTCTGACGATT-------AGGGGGAGTGCGC
1 CATCATCGGAGAACCTGATCGGCGGCATTGGGGTTTC-GGTGATTGGGGGGCGGGGGGTGTGCGC
* * *
1825 ACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTT
65 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTC
* *
1890 GAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
129 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
1955 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTTTTAGCTG
194 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTG
* *
2020 AATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTC-
259 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCT
* * * *
2084 CTGAAGAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAATG
324 CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
* *
2149 AGTCGTCTTGCGATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATA
389 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
2214 AAAATGGCATTGGCATGGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCC
454 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * **
2279 ACGGCTTGCGCATCCCGCCTATCTAGCCTGCTTAGTGCTCACCCAATCGCTCGTTTCATCGGTTG
519 ACGGCTTGCGCATCCCGCCTATCTGGCCTGCATAGTGCCCGCCCACCCGCTCGTTTCATCGGTTG
* * * ** **
2344 GCTCAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGATGGAGGGTTGTGGTAGTAGGA
584 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGA
* * *
2409 TCGACAGCACGCAGGGGGGACCCGACT-GATCCCTGGCTTGTGCATCCTGCCCCTCTAGCCGGCT
649 TCGACAGCACACAGGGGGGACCCGACTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
* *
2473 GAGTGCCCGCACGCTCGTTTCATGGGTTGAC-T-TAC-G-CA-T-AT-GGAGTTCATTCTCAGTG
714 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATACAGTCACTAATCGGAGTTCATTCCCAGTG
* * *
2531 TAACATCGA-ACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
779 TAAGATCGAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGC
* ** *
2595 ATTTTTTTTTTGCCTGGGGTAC
844 A-TTTTTTTTCGCCCAGGGCAC
* *
2617 CATCATCGGAGAACCTGATCGACGGCATTGGGGTTTCGGTGGTTGGGGGGCGGGGGGTGTGCGCA
1 CATCATCGGAGAACCTGATCGGCGGCATTGGGGTTTCGGTGATTGGGGGGCGGGGGGTGTGCGCA
*
2682 CATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCG
66 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCG
* * * *
2747 AGAACTCACACCCCCTGAAAGAGCATTTTAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
2812 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGA
* *
2877 ATTTTTTTATGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
260 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C-
* *
2942 TCTGAAAAAATTTTAAAAGAATCTCGAACCGTAAAATGTTTTGAAAATCGA-GAAAAATAGAAAA
323 TCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATC-ATGAAAAATAGAAAA
* * * **
3006 CAAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCTG
387 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
3071 TAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
452 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
3136 CCACGGTTTACGCATCCCGCCTGTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTTGTTTCGT
517 CCACGGCTTGCGCATCCCGCCTATCTGGCCTGCATAGT----GCCCGCCCACCCGCTCGTTTCAT
* * *
3201 CGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTA
578 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTA
* * * * * *
3266 GTAGGATTGGCAGCACACAGGGGGGGATCCGAC-CGATCCCCAGCTTATGCATCTTGCCCCTCTG
643 GTAGGATCGACAGCACACA-GGGGGGACCCGACTCGATCCCCGGCTTGTGCATCCTGCCCCTCTG
* *
3330 GCCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT----ATAC--AG-----T--C-A-C
*
3395 TAAGCATGCGGAGTTCATTCCCAGTGTAAGATC-AGACCAGACAAAGGGTTGCGGGTGCACATGC
757 T-A--AT-CGGAGTTCATTCCCAGTGTAAGATCGAGACCAGACCAAGGGTTGCGGGTGCACATGC
* * * * * *
3459 TGTGCTCAGGCATGTGCTTGTGTCACATTTTTTTTTGCCCAGTGCAC
818 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCAC
* *
3506 CATTGTCGGAGCATCGCTGGAGAACCTGA-CTGGCGGCATTGGGGTTCCGGTGATTGGGGGGCAG
1 CA---T-----CAT--C-GGAGAACCTGATC-GGCGGCATTGGGGTTTCGGTGATTGGGGGGCGG
* *
3570 GGGGTGTGCTCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
54 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
* * **
3635 CATCAAACCTTGAGAACTCACACCTCCTTAAAGAGTGTTTGAGATTTTACAGGTTTGCTGCCAGT
118 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
3700 ATCCATT
183 AGCCATT
3707 TTGAGTTTTT
Statistics
Matches: 1683, Mismatches: 185, Indels: 121
0.85 0.09 0.06
Matches are distributed among these distances:
848 72 0.04
849 47 0.03
850 5 0.00
854 1 0.00
856 254 0.15
857 3 0.00
859 208 0.12
860 1 0.00
863 87 0.05
864 72 0.04
865 2 0.00
868 3 0.00
869 3 0.00
870 49 0.03
871 100 0.06
872 101 0.06
873 214 0.13
874 155 0.09
875 2 0.00
879 39 0.02
881 1 0.00
882 1 0.00
884 1 0.00
888 2 0.00
889 19 0.01
890 71 0.04
892 1 0.00
897 3 0.00
899 2 0.00
900 164 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (864 bp):
CATCATCGGAGAACCTGATCGGCGGCATTGGGGTTTCGGTGATTGGGGGGCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTCT
GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGCCTATCTGGCCTGCATAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATC
GACAGCACACAGGGGGGACCCGACTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTATACAGTCACTAATCGGAGTTCATTCCCAGTGTA
AGATCGAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAT
TTTTTTTCGCCCAGGGCAC
Found at i:3737 original size:21 final size:22
Alignment explanation
Indices: 3705--3753 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
3695 CCAGTATCCA
3705 TTTTGAGTTTTTAGCTAAATTT
1 TTTTGAGTTTTTAGCTAAATTT
3727 TTTTGAGTTTTTAGCTAAATTT
1 TTTTGAGTTTTTAGCTAAATTT
3749 TTTTG
1 TTTTG
3754 TGCACACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.04, G:0.14, T:0.61
Consensus pattern (22 bp):
TTTTGAGTTTTTAGCTAAATTT
Found at i:11875 original size:730 final size:727
Alignment explanation
Indices: 9786--11953 Score: 3448
Period size: 730 Copynumber: 3.0 Consensus size: 727
9776 GCGGGGGGGG
* *
9786 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
1 TGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
9850 AAACCTCGAGAACTCACACCCCCTTAAAGAG-AGTTTGAGA-TTTACAGGTTTGCTGCCAGTAGC
66 AAACCTCGAGAACTAACACCCCCTTAAAGAGCA-TTTGAGATTTTACTGGTTTACTGCCAGTAGC
*
9913 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
130 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * *
9978 TTTAGCTGAATTTTTTTGCGCATTTCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCC
195 TTTAGCTGAATTTTTTTGTGCA-TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
10043 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCAAACCGTAAAAGGTTTAAAAATCATGAAAAA
259 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTAAAAATCATGAAAAA
* * *
10108 TAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAAATTA
324 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
10173 CAAGCCATAAAAATGGCATTGGTGTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
389 CAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
10238 TATCGATCCACGGTTTGTGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGTCCGCCCGCTCGTTT
454 TATCGATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTT
*
10303 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACCAGACTGAGGGTTGGG
519 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACTAGACTGAGGGTTGGG
* *
10368 GCAGCAGGATTGGCAGCATACA-GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
584 GCAGCAGGATCGGCAGCATGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
* *
10432 TGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTG
649 TGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTG
10497 TCTAAGCATACGGA
714 TCTAAGCATACGGA
*
10511 TGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACC
1 TGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
10576 AAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCC
66 AAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCC
10641 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * * * *
10706 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATTACGTCCACCAAGTGTGAGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
10771 AAAATCCTTC-AGAAAAAATTTTAAAAAAATCTCGAGCTGTAAAAAGTTTCAAAAATCATGAAAA
260 AAACTCCTTCTA-AAAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTT-AAAAATCATGAAAA
*
10835 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTT
323 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
10900 ACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
388 ACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
10965 CTATCGATCCACGGTTTGCACATCCCACCTCTCTGGCCGGTGTAGTGCCCGTCCGCCCGCTCGTT
453 CTATCGATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTT
*
11030 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACTAGACCGAGGGTTGG
518 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACTAGACTGAGGGTTGG
* * *
11095 GGCAGCAGGATCGGTAGCATGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCAACCTGCCCCT
583 GGCAGCAGGATCGGCAGCATGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCT
*
11160 CTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCT
648 CTGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCT
11225 GTCTAAGCATACGGA
713 GTCTAAGCATACGGA
*
11240 TGTGCGCAAATGATGTGCGATAGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
11305 AAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCC
66 AAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCC
* *
11370 ATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* *
11435 TTAGCTGAATTTTTTTTTTGCATGCCAAAAAAATTACAAGGATCACGACTACCAAGTTTGGGGCC
196 TTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCC
*
11500 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACTATAAAAAGTTTAGAAAATCATGAAAA
259 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTA-AAAATCATGAAAA
* *
11565 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
323 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
11630 ATGAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACACACCTACCACC
388 ACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * * *
11695 CTATCGATCCACGGCTTGCGCAACCTGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCATT
453 CTATCGATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTT
* * * ** * *
11760 TCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGACTGAGGGTTGC
518 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACTAGACTGAGGGTTGG
* * * * * * * *
11825 GGTAGCAGGATCAGCAGCATGTAGGGGGGGACCTGGTCGATCCTCGGCTTGTGCATCCTACCCCT
583 GGCAGCAGGATCGGCAGCATGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCT
* * * * *
11890 -TCAGTCGGCTAAGCGCCCGTACGCTCATTCCATGGGTTGACTTAGGAATACAGAGTTCATTCCC
648 CT-GGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
11954 AATCTAAACA
Statistics
Matches: 1327, Mismatches: 104, Indels: 19
0.92 0.07 0.01
Matches are distributed among these distances:
725 47 0.04
726 55 0.04
727 179 0.13
728 280 0.21
729 322 0.24
730 443 0.33
731 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (727 bp):
TGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTAAAAATCATGAAAAATA
GAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACTAGACTGAGGGTTGGGGC
AGCAGGATCGGCAGCATGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
GCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTC
TAAGCATACGGA
Found at i:15097 original size:898 final size:898
Alignment explanation
Indices: 13216--15134 Score: 2563
Period size: 898 Copynumber: 2.1 Consensus size: 898
13206 AGGTCGATAG
* * * * * * *
13216 CACA-GGGGGGA-CCGACCGAT-CGCGGCTTACGAATGCTAACCCTTCTGGCCGGCTGAGAC-CG
1 CACAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAG-CGCC
* * *
13277 CACACGGCTCGTTTCGTGGGTTGGCTTAGG-ACTACGGAAGTTCATCTCCCAGTCTAAGCATTCG
64 CGCAC-GCTCGTTTCGTGGGTTGACTTAGGCA-TACGG-AGTTCAT-TCCCAGTCTAAGCA-TAG
* * *
13341 GAGTTTCATTCCCAGTGTAAGATCGGACCAGACCGAAGGTTGCGGATGCACATGCTGGGCTCGAG
124 AAGTTTCATTCCCAGTGTAAGATCGGACCAGACCAAAGGTTGCGGACGCACATGCTGGGCTCGAG
* * ** *
13406 CATGTGCTGGTGCAGCATTTTTTTTTCACTCGGGGCACCGTCATTGGAGCATCGTCGGTGAACCT
189 CATGTGCTGGTGCAGCATTTTTTTTTCACTCGGGGCACCATCATCGGAGCATCACCGGAGAACCT
* *** * *
13471 GACCGACGGCATTAGAGTTTTGGCGATTAAGGGGGCGGGGGGGTGTGCGCATATGATGTGCGATG
254 GACCGACAGCATTAGAGTTTCAACGATTAAGGGGGCGGGGGGGTGTGCACACATGATGTGCGATG
*
13536 GGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCATGAACTCACACCCCC
319 GGTGCTGGTACTTGGCACTTATATTGGCCCCTATCCCTCATCAAACCTCATGAACTCACACCCCC
*
13601 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
384 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
13666 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTTTGCATG
449 ACTTTTTTCAAATGGTCACAAAACCCTATACACTTCGACTTTTTAGCTGAACTTTTTTGTGCATG
* *** * *
13731 CCAAAAAAGATACAAGGATCTTGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
514 CCAAAAAAGAAACAAGGATCACCTCTACAAAGTGTGGAGCCAAAACTCCTTCTGAAAAAATTTTA
* ** * * *
13796 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATAAGTCGTCATGCCTT
579 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCATGCCAT
*
13861 GAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
644 GAAACTTCACATAAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
13926 ACGATAGAAATATGAAGATGTGCCTAAACCCAACTACCACCTTATCGATCCATGGCTTGCACATC
709 ACGACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCACATC
* * * * * * ** **
13991 CCGCCCCTCTGGCCGGCGTAGTGCCCGCCTGTCCGCTCATTTCGTCGGTTGGCTTAGGCTTATGG
774 CCGCCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCATCGGATAGCTTAGGCACACAG
* * * *
14056 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCTGGATCAACAGCA
839 AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGGGCAGCAGGATCAACAGCA
* * * * *
14116 CACAGGGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCCTC-GGTCGGTTGAACGCCCG
1 CACAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
*
14180 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAG-TTC
66 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAGTTTC
* * * * * *
14244 ATTCCCAGTGTAAGATCGGATCGGA-CAAAGGGTTGTGGGCGCACATGCTTGGCTCGGGCATGTG
131 ATTCCCAGTGTAAGATCGGACCAGACCAAA-GGTTGCGGACGCACATGCTGGGCTCGAGCATGTG
* * * * *
14308 CTGGTGCCGTA-TTTTTTTT-GCTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
195 CTGGTGCAGCATTTTTTTTTCACTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGA
* * ** *
14371 CAGCATTGGGGTTTCAACGATTGGGGGGGTAGGGGGTGGGTGTGCACACATGATGTGCGATGGGT
260 CAGCATTAGAGTTTCAACGATTAAGGGGG--CGGGG-GGGTGTGCACACATGATGTGCGATGGGT
*
14436 GCTGGTACTTGGCACTTATATTGGCCCCTTATCCCTCATCAAACCTCGAT-AACTCACACCTCCT
322 GCTGGTACTTGGCACTTATATTGGCCCC-TATCCCTCATCAAACCTC-ATGAACTCACACCCCCT
14500 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
385 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
14565 CTTTTTTCAAATGGTCACAAAACCCTATTCCCTTTGACTTTTTAGCTGAA-TTGTTTTGTGCATG
450 CTTTTTTCAAATGGTCACAAAACCCTATACACTTCGACTTTTTAGCTGAACTT-TTTTGTGCATG
* *
14629 CCAACAAAA-AAACAAGGATCACCTCTACAAATTGTGGAGCCAAAACTCCTTGTGAAAAAATTTT
514 CCAA-AAAAGAAACAAGGATCACCTCTACAAAGTGTGGAGCCAAAACTCCTTCTGAAAAAATTTT
* *
14693 AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
578 AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCATGCCA
* *
14758 TGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGG
643 TGAAACTTCACATAAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * **
14823 CATGGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
708 CACGACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCACAT
* * **
14888 CCCGCCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGATAGCTTAGGCACACA
773 CCCGCCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCATCGGATAGCTTAGGCACACA
* * * ***
14953 GAGTTCATTCCCAGTCTAAGTTTAGACC-AGACTGAGGGTTGGGGCAGCAGGATTGGCAGCA
838 GAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGGGGCAGCAGGATCAACAGCA
* *
15014 TACA-GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
1 CACAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
15078 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATA
66 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
15135 TGGATGTGCG
Statistics
Matches: 885, Mismatches: 119, Indels: 32
0.85 0.11 0.03
Matches are distributed among these distances:
894 57 0.06
895 11 0.01
896 68 0.08
897 99 0.11
898 558 0.63
899 13 0.01
900 33 0.04
901 20 0.02
902 13 0.01
903 13 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CACAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAGTTTC
ATTCCCAGTGTAAGATCGGACCAGACCAAAGGTTGCGGACGCACATGCTGGGCTCGAGCATGTGC
TGGTGCAGCATTTTTTTTTCACTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGAC
AGCATTAGAGTTTCAACGATTAAGGGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
GTACTTGGCACTTATATTGGCCCCTATCCCTCATCAAACCTCATGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAACCCTATACACTTCGACTTTTTAGCTGAACTTTTTTGTGCATGCCAAAAA
AGAAACAAGGATCACCTCTACAAAGTGTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCATGCCATGAAACTT
CACATAAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGACAG
AAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCACATCCCGCCCC
TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCATCGGATAGCTTAGGCACACAGAGTTCAT
TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGGGCAGCAGGATCAACAGCA
Found at i:15441 original size:728 final size:728
Alignment explanation
Indices: 14411--15858 Score: 2112
Period size: 727 Copynumber: 2.0 Consensus size: 728
14401 AGGGGGTGGG
* *
14411 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCTTATCCCTCATC
1 TGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATC
* * * *
14476 AAACCTCGATAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
66 AAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
* * *
14541 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTATTCCCTTTGACTTT
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTATACACTTTGACTTT
*
14606 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACAAATTGTGGAGCCA
196 TTAGCTGAATTGTTTTATGCATGCCAACAAAAAAACAAGGATCACCTCTACAAATTGTGGAGCCA
* * *
14671 AAACTCCTTGTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
261 AAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAA
*
14736 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTA
325 TAGAAAACGAGTCATCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
14801 CATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCC
390 CAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * **
14866 TATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTTGTTT
455 TATCGATCCACGGCTTCCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTT
* * * * *
14931 CATCGGATAGCTTAGGCACACAGAGTTCATTCCCAGTCTAAGTTTAGACCAGACTGAGGGTTGGG
520 CATCGGATAGCTTAGGCACACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTAAGGCTTGGG
** * ** * * *
14996 GCAGCAGGATTGGCAGCATACAG-GGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
585 GCAGCAAAATTGGCAGCACACAGAAAGGGACCCGATCGATCCCCGACTTACACATCCTGCCCCTC
* * *
15060 TGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTG
650 TGGCCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
15125 TCTAAGCATATGGA
715 TCTAAGCATATGGA
* * *
15139 TGTGCGCAGATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-C
1 TGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATC
* *
15203 CAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
* ** * *
15268 GTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATTCTGTACACTTTCGAGTT
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTATACACTTT-GACTT
* * * *
15333 TTTAGCTGAATTTTTTTATGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTT-TGGGG
195 TTTAGCTGAATTGTTTTATGCATGCCAACAAAAAA-ACAAGGATCACCTCTA-CAAATTGTGGAG
* * *
15396 CCAAAACTCCTTCTAAAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAA
258 CCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
15461 AATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
323 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATT
*
15526 TACAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCCCCTACCAC
388 TACAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
15591 CCTATCGATCCATGGCTTCCGCATCCCACCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCAT
453 CCTATCGATCCACGGCTTCCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCAT
* * * * * **
15656 TTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTAAGGCTTG
518 TTCATCGGATAGCTTAGGCACACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTAAGGCTTG
* * * * *
15721 TGGCAGCAAAATTGGCAGCACATAGAAAGGGACTCGGTCGATCCCCGACTTACACATCGTGCCCC
583 GGGCAGCAAAATTGGCAGCACACAGAAAGGGACCCGATCGATCCCCGACTTACACATCCTGCCCC
* * * * * *
15786 TCTGGCCGACTGAGCGCTCTCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCC
648 TCTGGCCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
15851 AGTCTAAG
713 AGTCTAAG
15859 TATACGAAGT
Statistics
Matches: 636, Mismatches: 80, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
727 372 0.58
728 259 0.41
729 5 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (728 bp):
TGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTATACACTTTGACTTT
TTAGCTGAATTGTTTTATGCATGCCAACAAAAAAACAAGGATCACCTCTACAAATTGTGGAGCCA
AAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAT
AGAAAACGAGTCATCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTCCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTC
ATCGGATAGCTTAGGCACACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTAAGGCTTGGGG
CAGCAAAATTGGCAGCACACAGAAAGGGACCCGATCGATCCCCGACTTACACATCCTGCCCCTCT
GGCCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGCATATGGA
Found at i:16753 original size:27 final size:26
Alignment explanation
Indices: 16723--16773 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16713 CGTAGGTTGA
*
16723 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTA-GCATACAGAGTTCATTCCCAGT
*
16750 CTTAGCATATAGAGTTCATTCCCA
1 CTTAGCATACAGAGTTCATTCCCA
16774 ATCGGGGCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
CTTAGCATACAGAGTTCATTCCCAGT
Found at i:17532 original size:818 final size:822
Alignment explanation
Indices: 15983--20241 Score: 3519
Period size: 818 Copynumber: 5.0 Consensus size: 822
15973 GAGCATCGTT
* * * ** * * *
15983 GGAGAACCTGATCAGTGGCAT-TGGGGGTTCCGATG-ATTGGGGGGGCG-GGGGGTTTGCGCACA
1 GGAGAACCTGA-CCGGGGCATATAGGGGTTCCGGCGCATTGGGGGGGCGATGGGGTGTGCACACA
*
16045 TGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
16110 AACTCACGCCTCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGT
16175 CTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC-ATGTTTTTAGCTGAA
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTGTACACTTCGA-GTTTTTAGCTGAA
* * * * *
16238 TTTTTTTGTGCATGCCAACAAAAATATAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTT
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCAT
* * * * *
16303 TTGAAAAAATTTTAAAAAAATCTCAAATCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACG
323 CTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
16368 AGTCGTCTTGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
388 AGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16433 AAAATGGCATTGGCAGGGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCT
453 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
16498 ATGGCTTTCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCTTATTTCGTCGGTTG
518 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTG
** ** * * * *
16563 GCTTAGGCATACGAAGTTCATTCTTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGA
583 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGA
* * * * * *** **
16628 TCGACAGCACGCAAAGGGGGACAC-GACTGATTATCGGCTTGCTTATCCTGGCCCTCTGGCCGAC
648 TCGACAGCACGTAAGGGGGGACCCGGTC-AATCCCCGGCTTGCGCATCCT-GCCCTCTGGCCGAC
* ** * * *
16692 TGAGCACCCGTATACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTAGCA
711 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* * *
16757 TATAGAGTTCATTCCCAATCGGGGCACCATCACCGAAGC-ATC-ACC
776 TACAGAGTTCATTCCCAATCTGGGCACGATCACCGAAGCTATCAACC
*
16802 AGAGAACCTGACCGGCGGCAT-TAGGGGTTCCGGCG-ATTGGGGGGGC-A-GGGGTGTGCACACA
1 GGAGAACCTGACCGG-GGCATATAGGGGTTCCGGCGCATTGGGGGGGCGATGGGGTGTGCACACA
* *
16863 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
16928 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGT
* *
16993 CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATGATGTACACTTCGAGTTTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
17058 TTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTATCAAGTTTGCGGCCAAAAATCAATC
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATC
* * * * * *
17123 TGAAAAAA-TTAAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAGCGA
324 TGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* **
17187 GTCATCTTCCCATGAAACTTCACATGAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCATAA
389 GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
17252 AAATGGCATTGGCATGACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCA
454 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** *
17317 TGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCATCCGCTCGTTTCATCGGTTGG
519 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGG
* * * * * * *
17382 CTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCACACCAAATTGAGGATTGCGGTAGTAGGAT
584 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGAT
* * * ** * *
17447 CGACAGCACGTAAGGGGGGAGCCGGTCGATCCTCGAATTAG-GCATCCTGCCCTTCTGGCTGGCT
649 CGACAGCACGTAAGGGGGGACCCGGTCAATCCCCGGCTT-GCGCATCCTGCCC-TCTGGCCGACT
* * *
17511 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
712 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * **
17576 ACGGAGTTCATTCCCAGTCTAAG-ATCGGATCAAACCGAGGGCTATGGGAGCATATTCTGGGCTC
777 ACAGAGTTCATTCCCAATCTGGGCA-C-GATC--ACC----G--A----AGC-TA--------TC
17640 GATCATGCAC
819 -A--A--C-C
** * * * **
17650 TGGAGCCATATTTTTTTTCGCCCGGGGCACTATCGCTGAAGAACCTGATCGACGGCATTAGGGTT
1 -GGAG--A-A-----CCT-GACCGGGGCA-TATAG--G-GGTTCC-G---G-C-GCATT-GGG--
** ** **
17715 CCGAAGATTGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
43 GGGGCGA-T---GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
17780 CCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
104 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
17845 TTTGCTGCCAGTAGA-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
169 TTTGCTGCCAGTA-ACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
17909 -CTACATGCTTCGAGTTTTTAGCTGAATTTTTTTGAGCAGGCCAACAAAAATACAAGGATCACGT
233 TGTACA--CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
17973 CTACCAAGTTTGGGGCAAAAAATCCATCTGAAAAAATTTTAACAAAATCCCAAACCGTAAAAAGT
296 CTACCAAGTTTGGGGCCAAAAATCCATCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGT
*
18038 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
361 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * * * *
18103 GACCATTGCATGATTTTACAAGTCATAAAAATGGCTTTGGCATGGTAGAAATATGAAGATGTGCC
426 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* *
18168 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGC
491 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC
* * *
18233 CCGCCCGCCCCCCCGCTCATTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
556 CCGCCCG----CCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * **
18298 CCAAACCGGACTGAGGGTTACGACAGTAGGATCGGCAGCAC--ACAGAGGGGACCCGACCAATCC
617 TCAGACCAGACTGAGGGTTACGGCAGTAGGATCGACAGCACGTA-AGGGGGGACCCGGTCAATCC
*
18361 CCGGCTTGCGCATCCTGCACCTCTGTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
681 CCGGCTTGCGCATCCTGC-CCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * * *
18426 AGGCATACAGAGTTCATTCCTAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTG
745 AGGCATACAGAGTTCATTCCCAGTCTAAG--CATA-C--A--GA--GTT-C--ATTCCCA--AT-
* * * *
18491 GGCTTGGGCACGTGCTGGTGCCATATTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTC
795 --C-TGGGCA----C----G----A------TC-ACC---G-A--A--G-C-TATCAAC--C
* * * * *
18553 AGAGAACCTGACCGGTGGCAT-T-GGGGTTCCGACG-ATTGGGGGGGCGAGGGGGTGTACGCACA
1 GGAGAACCTGACCGG-GGCATATAGGGGTTCCGGCGCATTGGGGGGGCGATGGGGTGTGCACACA
** *
18615 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTTCTCATCAAACCTTGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * **
18680 AACTCACACCCCCTTAAAGAGCATTGGATATTTTACAGGTTTGCTACCAATAGTCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGT
* ** *
18745 CTAAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * *
18810 TTTTTTGTGCATGCCAATAAAAATTCAAGGATCAGGTCTACCAAGTTTGGAGCCAAAACTCCTTT
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATC
*** * *
18875 TGAAAAAATTTTAAAAAAATCTTGAACCGTGAAAAGTTTCAAAAATCATGAAAAATAAAAAACGA
324 TGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
18940 GTCATCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAA
389 GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
19005 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCTTATCGATCCA
454 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
19070 CGGCTTGTGCATCCCGCCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
519 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGG
* * * * * *
19135 TTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTACGGCAGTGGGAT
584 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGAT
* * *
19200 CGACAGCACGTAAGGGGGGACCCAGTCAATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-AGTC
649 CGACAGCACGTAAGGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCTG-CCCTCTGGCCGACT-
* * *
19264 GAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
712 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * * * * ** *
19329 ACGGAGTTCATTGCC-A---GTGTAAGATCGGACCGAA-CTGAGGGT-TGCG
777 ACAGAGTTCATTCCCAATCTGGGCACGATC--ACCGAAGCT-A---TCAACC
* * * * * * * *
19375 GGTGCACATG--CTGGGC-T-T-GGGCATGTGCTACTGCAGCATTTTTTTTGGCCTGGGGCACCA
1 GGAGAACCTGACCGGGGCATATAGGG---GT--TCCGGC-GCA------TTGG---GGGG-GCGA
* * ** * *
19435 TCGTCGGAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGCGGGG
50 T-G--GG-G--T-------G----TG--C-AC-ACA-TGATG-T--G-CGA-T--GGGTGC----
* ** ** ** **
19500 GGGTGTGGACACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCT
82 -----TGG-TAC-T--TG-GC--C-----CTTATA-TTGGCCC-CCTA-TCCCTCATC-------
*
19564 CATCAAACCTCAAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
120 ----AAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
19629 TAGCCATTAAAGTGTCTGAAATGGGGATACATTTTTCAAATGGTCACAAAATCCTGTACACTTCG
180 TAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTGTACACTTCG
* * * * *
19694 AGTTTTTAGCTAAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACGTCTAACAAGCTTGG
244 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * * *** **
19759 GG-CAAAACTCTTTCTAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATG
309 GGCCAAAAATCCATCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
* * *
19823 AAAAGTAGAAAAC-ATGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATG
374 AAAAATAGAAAACGA-GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* ** *
19887 GATTTACAAGCCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTA
438 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
19952 CTACCCTATCGATCCACGACTTGTGCATCCCGCCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGC
503 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
20017 ACGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAATTGAG
568 TCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAG
* * ** * ** * **
20081 GGTTGCGACAGTAGGATCGGTAGCACG-CAGAGGGGGACCCGACCGATCCCAAAG-TTGCGCATC
632 GGTTACGGCAGTAGGATCGACAGCACGTAAG-GGGGGACCCGGTCAATCCC-CGGCTTGCGCATC
* * * * * *
20144 CTACCCCTCTGGCC-AGTTGAG-AGCCCGCAC-CTCATTTTGTGGGTTGACTTAGACATACGGAG
695 CT-GCCCTCTGGCCGA-CTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
**
20206 TTCATTTGCAGTCTAAGCATACAGAGTTCATTCCCA
757 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
20242 GTGTAAGATC
Statistics
Matches: 2817, Mismatches: 400, Indels: 367
0.79 0.11 0.10
Matches are distributed among these distances:
817 5 0.00
818 547 0.19
819 161 0.06
820 3 0.00
821 5 0.00
822 8 0.00
823 3 0.00
824 2 0.00
825 2 0.00
826 1 0.00
827 1 0.00
828 1 0.00
829 1 0.00
831 9 0.00
832 3 0.00
833 1 0.00
834 4 0.00
835 2 0.00
836 1 0.00
837 1 0.00
838 2 0.00
839 1 0.00
841 4 0.00
845 1 0.00
847 1 0.00
848 2 0.00
849 6 0.00
851 1 0.00
852 2 0.00
854 1 0.00
855 2 0.00
856 2 0.00
857 8 0.00
858 7 0.00
859 4 0.00
860 1 0.00
861 4 0.00
862 7 0.00
863 1 0.00
864 7 0.00
866 1 0.00
867 1 0.00
868 2 0.00
869 6 0.00
870 87 0.03
871 97 0.03
872 3 0.00
873 4 0.00
874 461 0.16
875 1 0.00
876 8 0.00
877 2 0.00
878 261 0.09
879 206 0.07
880 4 0.00
881 5 0.00
882 94 0.03
883 82 0.03
884 3 0.00
885 5 0.00
886 7 0.00
887 5 0.00
888 5 0.00
889 3 0.00
891 4 0.00
892 2 0.00
893 6 0.00
894 9 0.00
896 1 0.00
897 64 0.02
898 375 0.13
899 151 0.05
900 4 0.00
901 1 0.00
902 4 0.00
903 1 0.00
904 1 0.00
906 1 0.00
907 2 0.00
911 1 0.00
912 1 0.00
914 2 0.00
915 5 0.00
916 2 0.00
917 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (822 bp):
GGAGAACCTGACCGGGGCATATAGGGGTTCCGGCGCATTGGGGGGGCGATGGGGTGTGCACACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCTG
AAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCT
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGATCG
ACAGCACGTAAGGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCTGCCCTCTGGCCGACTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCCAATCTGGGCACGATCACCGAAGCTATCAACC
Found at i:17582 original size:26 final size:26
Alignment explanation
Indices: 17546--17598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17536 GTTGACTTAG
17546 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17598 G
1 G
17599 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18810 original size:874 final size:870
Alignment explanation
Indices: 17726--23646 Score: 4723
Period size: 898 Copynumber: 6.6 Consensus size: 870
17716 CGAAGATTGG
* *
17726 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17791 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17856 TAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC--CTACATGCTT
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA--CTT
* *
17919 CGAGTTTTTAGCTGAATTTTTTTGAGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
17984 GGGGCAAAAAATCCATCTGAAAAAATTTTAACAAAATCCCAAACCGTAAAAAGTTTCAAAAATCA
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
*
18049 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * *
18114 GATTTTACAAGTCATAAAAATGGCTTTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
*
18179 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCCCGCCCC
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG----
* * * * *
18244 CCCGCTCATTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAAACCGGAC
515 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
18309 TGAGGGTTACGACAGTAGGATCGGCAGCACACAGAGGGGACCCGACCAATCCCCGGCTTGCGCAT
580 TGAGGGTTACGACAGTAGGATCGGCAGCACACAGAGGGGACCCGACCAATCCCCGGCTTGCGCAT
* *
18374 CCTGCACCTCTGTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
645 CCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* * *
18439 TCATTCCTAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCACGT
710 TCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
* *
18504 GCTGGTGCCATA-TTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGG
775 GCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
*
18568 TGGCATTGGGGTTCCGACGATTGGGGGGGCGA
840 CGGCATTGGGGTTCCGACGATT-GGGGGGCGA
* **
18600 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTTC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
18665 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTGGATATTTTACAGGTTTGCTACCAA
66 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * **
18730 TAGTCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
18795 AGTGTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATTCAAGGATCAGGTCTACCAAGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
18860 AGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTTGAACCGTGAAAAGTTTCAAAAATCATG
261 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
18925 AAAAATAAAAAACGAGTCATCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
18990 ATTTAGAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAT
391 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
19055 CACCTTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCT
456 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
* * * * *
19120 CGTTTCGTCGATTGGTTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGG
521 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * *
19185 TTACGGCAGTGGGATCGACAGCACGTA-AGGGGGGACCC-AGTCAATCCCCGGCTTGTGCATCCT
586 TTACGACAGTAGGATCGGCAGCAC--ACAGAGGGGACCCGA-CCAATCCCCGGCTTGCGCATCCT
* * * *
19248 GCCCCTCTGGCC-AGTCGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
648 GCCCCTCTGGCCGACT-GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
*
19312 ATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTGTAAGATCGGACCGAACTGAGGGTTGCGGG
712 ATTCCCAG--T--G--TA---AG---A-T--C------AGACCGGA-C---C-GAGGGTTGCGGG
* ** * *
19377 TGCACATGCTGGGCTTGGGCATGTGCTACTG-CAGCATTTTTTTTGGCCTGGGGCACCATCGTCG
751 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTTTTCGCCCGGGGCACCATCGTCG
* * * * *
19441 GAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGCGG
815 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGCGA
*
19498 GGGGGTGTG-GACACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGTGTGCG-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
19562 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CTCATCAAACCTTAAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
19627 AGTAGCCATTAAAGTGTCTGAAATGGGGATACATTTTTCAAATGGTCACAAAATCCTGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
19692 CGAGTTTTTAGCTAAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACGTCTAACAAGCTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * **
19757 GGGG-CAAAACTCTTTCTAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCA
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
* *
19821 TGAAAAGTAGAAAAC-ATGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTA
324 TGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* ** * *
19885 TGGATTTACAAGCCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACC
388 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19950 TACTACCCTATCGATCCACGACTTGTGCATCCCGCCTCTCTGGCC-AGTGTAGTGCCCGCCCGCC
453 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCC
* * * *
20014 CGCACGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAATTG
517 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * * **
20079 AGGGTTGCGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCAAAG-TTGCGCAT
582 AGGGTTACGACAGTAGGATCGGCAGCACACAGA-GGGGACCCGACCAATCCC-CGGCTTGCGCAT
* *
20143 CCTACCCCTCTGGCC-AGTTGAG-AGCCCGCAC-CTCATTTTGTGGGTTGACTTAGACATACGGA
645 CCTGCCCCTCTGGCCGA-CTGAGCA-CCCGCACGCTC-----GT---TT--C---G---T--GG-
* * *
20205 GTTCATTTGCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTG
689 G-----TTG-ACT-TAGGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTG
* * * * ***
20270 CAGGTGCACATGCTGGGCTCGGACATGTGGTGGTGCCATATTTTTTTTTCGCCTATGGCACCATC
747 CGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATC
* *
20335 GTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGATG-
811 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG-CGA
* ** * * * *
20395 GGGGGTGTGCACACATGATGTTTGGTGGGTGCTGGAACTTGGCCCTTATATTGGCCACCTATGCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
20460 TCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
66 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
20525 TTGCCATTAAAGTGT-TTAGAATGGGGACACTTTTTTCAAATGCTCGGGCATGCAAGATC-AG-A
131 TAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAA---T-GGTCA--CAAAATCTTGTA
* * *** * * * * *** * *
20587 TCGGAC--CGAG-GTTTACGGGTGCACATGCTGGGCTCGGGCATG--TACTAGTGT-C--GTATT
189 -C--ACTTCGAGTTTTTA--GCTG-A-AT--T-TTTTTGTGCATGCCAACAAAAATACAAGGATC
*** * * * * * **** ***
20644 TTTTTTCACCCGAGGTACCATCGTCGG--AAAACCTGACCATC-GAGATTGGGGTTTT--AGCGA
244 ACGTCT-A-CC-AAGT----TTG-GGGCCAAAA-CT--CCTTCTGA-A--AAAATTTTAAAAAAA
* **** ***** * * * ** ** * * * *
20704 T-TGGGGGGGTGGGGGGTGTC-CACA-CATG--ATGT-G-CGATGGGTGCTGGTACTTGTCCCTT
295 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT-C--GT-CTTG-CCATG
* * * * * * ** * * *
20762 ATA-TTGGCCCCCT-AA-CCGTAA---A-AAGTT-TCAAAAATCATGA-AA--AATAGAAAACGA
355 AAACTT---CACATGAAGGCTTAAGGGACCA-TTGT-ATGAAT--TTACAAGCCATA-AAAATG-
* * * * * ** ** ***
20816 GTCATCTTGCCAT-G-A-AACT-TCACATGAAG-GCTTAAGGGA-CCATTGTATGAATTTA-CAA
411 G-CA--TTGGCATGGTAGAAATATGA-A-GATGTGCCTAA---ACCCA-CCTACCACCCTATC--
** * * *** * ** * * * * *
20874 GCCATAAAATGGCATTG-GCA-CGACAG-AAATAT-GAAGATGTGATTAAACCCACCTACCACCC
465 G--AT-CCACGGC-TTGCGCATC--CCGCCTCTCTGGCCGACGT-AGT--GCCC-GC--CCGCCC
** * * * * * *** *
20935 TATCGATCCA-CGGCTTGCGC-AACCCGCCTCTATCATCGGCGTAGTGCCCGCCCAGCTGCT-TG
518 GCTCGTTTCATCGG-TTG-GCTTA---G--GC-AT-A-C-G-G-AGTTCATTCCCAG-T-CTAAG
* ** * * ** * ** * * **** *
20997 TTTCATCGATTGG-TTTAGGCATACG-GAGT-TCACTC-CCAGTC-TA-AGATCAAACCGGACCA
568 -ATCA--GACCGGACTGAGGGTTACGACAGTAGGA-TCGGCAG-CACACAGAGGGGACCCGACCA
*** * * * * *** ** * * *
21056 AGGGT-TTTGGC-GGCAGGATCGACAGCTCACAGGGGGGGACCCG-GTCGATCCTTGGCTTGCGC
628 A---TCCCCGGCTTGC-GCATC--CTGC-CCCTCTGGCCGA-CTGAG-C-A-CC--CGC--ACGC
* ** * * ** * ***
21118 ATCCTGCCCCTCGTGCCGACTGAGCGCCCGCACGCTCATTTTTTGGGTTGACTTAGGCATACGAA
678 -TCGT-TTCGT-GGGTTGACTTAG-GCATACA-G---A-----------G---T-----T-C---
** *
21183 GTTTATTCCCAGTGTAAGATCAGACCCAACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAT
712 ----ATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
* *
21248 GTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC
773 GTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
*
21313 GGCGGCATTGGGGTTTCGACGATTGGGGGGC-A
838 GGCGGCATTGGGGTTCCGACGATTGGGGGGCGA
* * *
21345 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
21410 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
21475 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
** * *
21540 AGTTTTTATTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * **
21605 GGCCAAAACTCCTTTTTAAAAAATTTAAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTG
261 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
*
21670 AAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
21735 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAATCCACCTAC
391 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** * ** *
21800 CACCTTATCGATCCACGGCTTGTGCATCCCGTTTCTTTGGCCGGTGTAGTGCTCGCCCGCCCGCT
456 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
* * * * * * * ** *
21865 CGTTTCGTCGGTTGGTTTAGGCATATGGAGTTCATTCCTACTCTAAGATCAGATCGAACCAATGG
521 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* ** * * * * *
21930 TTGC-AGCAGTAGGATCACCAGCACGCAAGAGGGGACCC-AGTCGATCCCCTGCTTGTGCATCCT
586 TTACGA-CAGTAGGATCGGCAGCACAC-AGAGGGGACCCGA-CCAATCCCCGGCTTGCGCATCCT
* * * *
21993 GCCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCA
648 GCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* *
22058 TTCCCAGTCTAAACAAACGGAGTTCAATCCCACTGTAAGATCGGACCAGACCGAGGGTTGCGGGT
713 -T-----TC----C---C--AG-----------TGTAAGATCAGACCGGACCGAGGGTTGCGGGT
* * ** * *
22123 GCACATGCTGGGCTCGGGCATGTACTAGTGCTGCA-TTTTTTTCACCCTGGGCACCATCGTCGGA
752 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGA
** * * *
22187 GCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGCGG
817 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGA
* * * * *
22241 GGGGGTGTGCACACATGATGTGAGATGGGAGCTGGTGCTTGGCCATTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
22306 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
22371 TAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
22436 AGTTTTTAGGTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
22500 GGCCAAAACTCCTTTTGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAGGTTTC-AAAATCGTG
261 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
*
22563 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* *
22628 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACACACCTTC
391 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
22693 CACCCTGTCGATCCAC-GCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCACT
456 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
* * * * * * ** **
22757 CGTTTCGTCGGTTGGCTTAGGGATACAGAGTTTATTCCTAATCTAAGAT-AGAGCTAGACCAAGG
521 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACTGAGG
** * * * * * *
22821 GTTGTGATAGCT-GGAAT-GGCAGCACGCA-AGGGGGACCCGATCGATCCCTGACTT-CTGCATC
585 GTTACGACAG-TAGG-ATCGGCAGCACACAGA-GGGGACCCGACCAATCCCCGGCTTGC-GCATC
* ** * *
22882 CTGTCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTT
646 CTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---
*
22947 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCAG
694 C-TT---AG-----GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGG
* **
23012 GTGCACATGCTGGGCTCAGAAATGTGCTGGTGCCACATTTTTTTTC-CCTCGGGGCACCA---TC
750 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCC-CGGGGCACCATCGTC
* * *
23073 ---G---C--CGGAGAACCTGACCAGCGGCATTGGGGTTTCGGCGATT--------A
814 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGA
*
23114 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
23179 TCATCAAACCTCT-TGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTA
66 TCATCAAACCT-TAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
23242 GTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACGAAATCCTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
23307 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTA
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
23372 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
260 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* *
23437 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTATATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* *
23502 AATTTACAAGCCACAAAAATGGCATTGACATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
390 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
23567 CCACCCTATCGATCCACGGCTTGCGCATCCCACCTCACTGGCCGACGTAGTGCTCGCCCGCCCGC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
*
23632 TCGTTTCATTGGTTG
520 TCGTTTCATCGGTTG
23647 TGGCAGCAGG
Statistics
Matches: 4018, Mismatches: 687, Indels: 682
0.75 0.13 0.13
Matches are distributed among these distances:
870 86 0.02
871 94 0.02
872 132 0.03
873 135 0.03
874 486 0.12
875 147 0.04
876 59 0.01
877 3 0.00
878 1 0.00
880 3 0.00
881 33 0.01
883 4 0.00
884 1 0.00
885 2 0.00
886 3 0.00
889 2 0.00
890 1 0.00
891 122 0.03
892 131 0.03
893 152 0.04
894 25 0.01
895 131 0.03
896 344 0.09
897 179 0.04
898 585 0.15
899 152 0.04
900 10 0.00
901 10 0.00
902 32 0.01
903 6 0.00
904 8 0.00
905 15 0.00
906 9 0.00
907 26 0.01
908 15 0.00
909 25 0.01
910 22 0.01
911 28 0.01
912 24 0.01
913 8 0.00
914 25 0.01
915 26 0.01
916 16 0.00
917 27 0.01
918 2 0.00
919 4 0.00
920 16 0.00
921 14 0.00
922 5 0.00
923 24 0.01
924 1 0.00
925 2 0.00
926 3 0.00
927 16 0.00
928 6 0.00
929 3 0.00
930 11 0.00
931 20 0.00
932 20 0.00
933 23 0.01
934 10 0.00
935 21 0.01
936 29 0.01
937 21 0.01
938 23 0.01
939 23 0.01
940 19 0.00
941 13 0.00
942 9 0.00
943 5 0.00
944 15 0.00
945 7 0.00
946 9 0.00
947 1 0.00
950 153 0.04
951 78 0.02
952 67 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
TTACGACAGTAGGATCGGCAGCACACAGAGGGGACCCGACCAATCCCCGGCTTGCGCATCCTGCC
CCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATTGGGGGGCGA
Found at i:19335 original size:26 final size:26
Alignment explanation
Indices: 19299--19351 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19289 GTTGACTTAG
19299 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
19325 GCATACGGAGTTCATTGCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19351 G
1 G
19352 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19767 original size:898 final size:894
Alignment explanation
Indices: 18428--23638 Score: 4783
Period size: 898 Copynumber: 5.8 Consensus size: 894
18418 GTTGACTTAG
* *
18428 GCATACAGAGTTCATTCCTAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
18493 CTTGGGCACGTGCTGGTGCCATA-TTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
18557 AACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCGAGGGGGTGTACGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGCGAGGGGGTGT-GGCACATGATGTG
** **
18622 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTTCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * * *
18687 ACCCCCTTAAAGAGCATTGGATATTTTACAGGTTTGCTACCAATAGTCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
18752 GGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
18817 TGCATGCCAATAAAAATTCAAGGATCAGGTCTACCAAGTTTGGAGCCAAAACTCCTTTTGAAAAA
389 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
* * * *
18882 ATTTTAAAAAAATCTTGAACCGTGAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCT
454 ATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
18947 TACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19012 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCTTATCGATCCACGGCTTG
584 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19077 TGCATCCCGCCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGTTTAGGC
649 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGC
*** * *
19142 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTACGGCAGTGGGATCGACAGC
714 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGATCGACAGC
* * *
19207 ACGTAAGGGGGGACCCAGTCAATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCAGTCGAGCGCTC
779 ACGCAAGGGGGGACCC-GTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GTCGAGCGCCC
19272 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
19325 GCATACGGAGTTCATTGCCAGTGTAAGATCGGACCGAACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* ** * * *
19390 CTTGGGCATGTGCTACTG-CAGCATTTTTTTTGGCCTGGGGCACCATCGTCGGAGCATCGCCAGA
66 CTCGGGCATGTGCTGGTGCCA-CATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
19454 GAACTTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGCGGGGGGGTGTGGACACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGCGAGGGGGTGTGG-CACATGATGT
*
19519 GCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
19584 CACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 CACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19649 ATGGGGATACATTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19714 TATGCATGCCAATAAAAATACAAGGATCACGTCTAACAAGCTTGGGG-CAAAACT-CTTTCTAAA
387 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-TGAA
* * ** *
19777 AAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAGTAGAAAAC-ATGTC
451 AAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTC
* *
19841 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGGATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
19906 TGAAATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACTACCCTATCGATCCACGA
580 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
19971 CTTGTGCATCCCGCCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCACGTTTCATCGGTTGGCTT
645 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTT
* * * *** * *
20036 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAATTGAGGGTTGCGACAGTAGGATCGG
710 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGATCGA
* * ** * * *
20101 TAGCACGC-AGAGGGGGACCCGACCGATCCCAAAG-TTGCGCATCCTACCCCTCTGGCCAGTTGA
775 CAGCACGCAAG-GGGGGACCCG-TCGATCCC-CGGCTTGTGCATCCTGCCCCTCTGGCC-GTCGA
* * * * **
20164 GAGCCCGCAC-CTCATTTTGTGGGTTGACTTAGACATACGGAGTTCATTTGCAGTCTAA
836 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
20222 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * * **
20287 CTCGGACATGTGGTGGTGCCATATTTTTTTTTCGCCTATGGCACCATCGTCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
20352 GAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGATG-GGGGGTGTGCACACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG-CGAGGGGGTGTG-GCACATGATGT
** * * * *
20416 TTGGTGGGTGCTGGAACTTGGCCCTTATATTGGCCACCTATGCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
20481 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTTGCCATTAAAGTGT-TTAGA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
* * * *
20545 ATGGGGACACTTTTTTCAAATGCTCGGGCATGCAAGAT-CAG-ATCGGAC--CGAG-GTTTACGG
322 ATGGGGACACTTTTTTCAAA---T-GGTCA--CAAAATCCTGTA-C--ACTTCGAGTTTTTA--G
* *** * * * * *** * **** * *
20605 GTGCACATGCTGGGCTCGGGCATG-TACT-AGTGT-C--GTATTTTTTTTCACCCGAGGTACCAT
376 CTG-A-AT--T-TTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCT-A-CC-AAGT----T
* * * * **** *** **** *****
20665 CGTCGG--AAAACCTGACC-ATCGAGATTGGGGTTTT--AGCGAT--TGGGGGGGTGGGGGGTGT
429 TG-GGGCCAAAA-CT--CCTTTTGA-A--AAAATTTTAAAAAAATCCT-GAACCGTAAAAAGT-T
* * * * **** **** ** *** * * * *
20723 CCACACATGATGTGCGAT-GGGTGCTG-GTACTTGTCCCTT-ATATTGGCCCCCTAACCGTAAAA
485 TCAAAAATCATGAAAAATAGAAAAC-GAGT-C--GT--CTTGCCA-T-GAAACTTCA-CAT-GAA
* * ** * * * * ** ** ** *
20785 AGTTTCAA-AAATCA-TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
540 GGCTT-AAGGGACCATTG---TAT-G---A--ATTTA-CAAGCCAT-AAAAATGGCAT--TGGC-
* * * ** * *** ** * *** **
20848 TAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCA-TTGGCACGACAGAAATAT-GA-AG
590 -ATGGCA-GA-AATATGAA--GATGTGCC-T-AAA-CCCACCT---AC--CA-CCCTATCGATCC
* * * * * * **
20910 ATGTGATTAAACCCACCTACCAC-CCTATC-GATCCACGGC-T--TG--CG-CAACCCGCCTC-T
641 ACG-GCTT--GCGCA--T-CC-CGCCTCTCTG--GC-CGGCGTAGTGCCCGCCCGCCCG-CTCGT
* * * * **** ** ** * * * * * *
20966 ATCATCGGCGTAGTGCCCGCCCAGCTGCTTGTTTCA-T-CGATTGGTTTAG-GCATA-CGGAGTT
695 TTCGTCGG-TTGGTTTAGGCATA-C-G-GAG-TTCATTCCCAAT--CTAAGATCAGACCGGA---
**** * * *
21027 CACTCCCAGTCTAAGATCAAACCGGACCAAGGGTTTTGGCGGCAGGATCGACAGCTCACAGGGGG
750 C-C-AAGGGT-T--G-------CGG--C-A--G---T------AGGATCGACAGCACGCAAGGGG
** * *
21092 GGACCCGGTCGATCCTTGGCTTGCGCATCCTGCCCCTC-GTGCCGACTGAGCGCCCGCACGCTCA
789 GGACCC-GTCGATCCCCGGCTTGTGCATCCTGCCCCTCTG-GCCGTC-GAGCGCCCGCACGCTCA
**
21156 TTTTTTGGGTTGACTTAGG----C--A--T-A----C-G---AA
851 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
21183 G--T------TT-ATTCCCAGTGTAAGATCAGACCCAACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* *
21239 CTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
21304 AACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGC-AGGGGGTGTGCGCACATGATGTGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTG-GCACATGATGTGC
* * **
21368 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
21433 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
21498 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATTTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
21563 GCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTTTTAAAAAA
390 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
* * ** *
21628 TTTAAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACTAGTCGTCTT
455 TTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
21693 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
21758 TTGGCATGGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCTTATCGATCCACGGCTTGT
585 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * *
21823 GCATCCCGTTTCTTTGGCCGGTGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCA
650 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCA
* * * * * * *
21888 TATGGAGTTCATTCCTACTCTAAGATCAGATCGAACCAATGGTTGCAGCAGTAGGATC-ACCAGC
715 TACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGATCGA-CAGC
* * * *
21952 ACGCAAGAGGGGACCCAGTCGATCCCCTGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCTC
779 ACGCAAGGGGGGACCC-GTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGTC-GAGCGCCC
* * *
22017 GCACGCTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAA
842 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
22070 ACAAACGGAGTTCAATCCCACTGTAAGATCGGACC-AGACCGAGGGTTGCGGGTGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGA-ACCGAGGGTTGCGGGTGCACATGCTGG
* * ** * **
22134 GCTCGGGCATGTACTAGTGCTGCA-TTTTTTTCACCCT-GGGCACCATCGTCGGAGCATCACCGG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTC-GCCTGGGGCACCATCGTCGGAGCATCGTCGG
* * * *
22197 AGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGCGGGGGGGTGTGCACACATGATGT
129 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTG-GCACATGATGT
* * * *
22262 GAGATGGGAGCTGGTGCTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
22327 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAT
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
22392 TGGGGACACTTTTTTCAAATGGTCACAAAAT-CTGGTACACTTCGAGTTTTTAGGTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCT-GTACACTTCGAGTTTTTAGCTGAATTTTTT
*
22456 TGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
387 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
* * *
22520 AAATTTT-AAAAAATCCCGAACCGTAAAAGGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
22583 CTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
22648 GCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACACACCTTCCACCCTGTCGATCCAC-GCT
582 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
22712 TGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
647 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAG
* * * * ** * **
22777 GGATACAGAGTTTATTCCTAATCTAAGAT-AGAGCTAGACCAAGGGTTGTGATAGCT-GGAAT-G
712 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CCGGACCAAGGGTTGCGGCAG-TAGG-ATCG
* * * * * *
22839 GCAGCACGCAA-GGGGGACCCGATCGATCCCTGACTTCTGCATCCTGTCCCTCTGGCCGGTTGAG
774 ACAGCACGCAAGGGGGGACCCG-TCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GTCGAG
* * *
22903 CGCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
22961 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* **
23026 CTCAGAAATGTGCTGGTGCCACATTTTTTTTC-CCTCGGGGCACCA---TC---G---C--CGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCT-GGGGCACCATCGTCGGAGCATCGTCGGA
* * *
23079 GAACCTGACCAGCGGCATTGGGGTTTCGGCGATT--------AGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTG-GCACATGATGTG
* **
23136 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTTGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
23201 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
23265 GGGGACAGTTTTTTCAAATGGTCACGAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
23330 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTAAAAAA
389 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
**
23395 ATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
23460 TGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCACAAAAATGGC
519 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
23525 ATTGACATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
23590 CGCATCCCACCTCACTGGCCGACGTAGTGCTCGCCCGCCCGCTCGTTTC
649 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
23639 ATTGGTTGTG
Statistics
Matches: 3482, Mismatches: 605, Indels: 475
0.76 0.13 0.10
Matches are distributed among these distances:
869 1 0.00
870 87 0.02
871 1 0.00
872 130 0.04
873 137 0.04
874 26 0.01
875 146 0.04
876 49 0.01
878 1 0.00
879 2 0.00
881 34 0.01
882 1 0.00
883 2 0.00
884 3 0.00
886 1 0.00
887 2 0.00
889 2 0.00
890 4 0.00
891 170 0.05
892 123 0.04
893 151 0.04
894 26 0.01
895 134 0.04
896 354 0.10
897 302 0.09
898 597 0.17
899 161 0.05
900 9 0.00
901 20 0.01
902 27 0.01
903 11 0.00
904 6 0.00
905 6 0.00
906 3 0.00
907 8 0.00
908 4 0.00
909 7 0.00
910 9 0.00
911 10 0.00
912 20 0.01
913 2 0.00
914 10 0.00
915 1 0.00
916 7 0.00
917 4 0.00
918 11 0.00
919 13 0.00
920 5 0.00
921 2 0.00
922 2 0.00
925 1 0.00
926 2 0.00
927 5 0.00
928 14 0.00
929 11 0.00
930 4 0.00
931 7 0.00
932 1 0.00
933 9 0.00
934 1 0.00
935 23 0.01
936 13 0.00
937 10 0.00
938 5 0.00
939 11 0.00
940 4 0.00
941 5 0.00
942 7 0.00
943 6 0.00
944 16 0.00
945 22 0.01
946 20 0.01
947 2 0.00
948 11 0.00
949 12 0.00
950 163 0.05
951 80 0.02
952 67 0.02
953 4 0.00
954 1 0.00
956 1 0.00
959 1 0.00
961 3 0.00
963 2 0.00
964 1 0.00
965 2 0.00
966 1 0.00
968 1 0.00
969 1 0.00
970 1 0.00
971 1 0.00
972 1 0.00
974 1 0.00
976 3 0.00
977 58 0.02
978 23 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (894 bp):
GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAAT
TTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCAT
ACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGATCGACAGCAC
GCAAGGGGGGACCCGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGTCGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:20243 original size:26 final size:26
Alignment explanation
Indices: 20197--20248 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20187 TTGACTTAGA
* **
20197 CATACGGAGTTCATTTGCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
20223 CATACAGAGTTCATTCCCAGTGTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
20249 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:22971 original size:26 final size:26
Alignment explanation
Indices: 22935--22987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22925 GTTGACTTAG
*
22935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
22961 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22987 G
1 G
22988 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:23786 original size:26 final size:26
Alignment explanation
Indices: 23757--23809 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23747 GTTGACTTAG
*
23757 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
23783 GCATATGAAGTTCATTCCTAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23809 G
1 G
23810 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24979 original size:26 final size:26
Alignment explanation
Indices: 24941--24993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24931 GTTGACTTAG
** *
24941 GCATACGGGGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
24967 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24993 G
1 G
24994 ATCGAACCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25759 original size:885 final size:884
Alignment explanation
Indices: 23958--26579 Score: 3653
Period size: 886 Copynumber: 3.0 Consensus size: 884
23948 GGGGGGGTGT
* * * * * * * *
23958 GCACGCAAGGGGGGACCCAGTCGATCCCCGGCTTGTGTATCCTGCCCCTCCGGCCGGTTGAGCGC
1 GCACGCAGGGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTACGGTCGGCTGAGCGC
* * * * * ** *
24023 TCGTACGCTCATTTCATGGGTTAACTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACAAAG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
** *
24088 TTCATT-CCAGGTGTAAGATCGAACCGAAATGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCAT
131 TTCATTCCCA-GTGTAAGATCGAACCGACCTGAGGGTTGCAGGTGCACATGCTGGGCTTGGGCAT
** * * * * ***
24152 GTGCTGGTGCCTTATTTTTTTTTTGTCCGAGGCACCATCGTCGAAGAACCTGACTGGCGACGTTG
195 GTGCTGGTGCCGCA-TTTTTTTTTGCCCGGGGCACCATCGTCGAAGAACCTGACCGACGGTATTG
*
24217 GGGTTCCGGCGATTGAAGGGGGTAGGGGCGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
259 GGGTTCCGGCGATT--AGGGGG-AGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
24282 TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCAT
320 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCAT
** *
24347 TTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAA
385 TTGAGATTTTACAGGTTTGCT-ATAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
24411 ATGGTCCCAAAATGCTGTACAATTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
449 ATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
***
24476 ACAAGGATCATG-ACTTTTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCC
514 ACAAGGATCATGTA-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAATCC
** * * *
24540 TGAAGTGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCA
577 TGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
24605 AATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGATAGAC
642 CATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAA
** * *
24669 ATATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTA
707 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * *
24734 TGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTC
772 TGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** **
24799 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGGCA
837 CTAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCAGCA
* * *
24847 GCTCACAGGGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT-CGTGTCGACTGAGCG
1 GCACGCAGGGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTACG-GTCGGCTGAGCG
* * * *
24911 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGGGTTCATTCGCAGTCTAAGCATACGAA
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
* * * * *
24976 GTTCATTCCCAGTGTAAGATCGAACCCACCTGAGGGTTACAGGTGCACATACTGGGCTCGAGCAT
130 GTTCATTCCCAGTGTAAGATCGAACCGACCTGAGGGTTGCAGGTGCACATGCTGGGCTTGGGCAT
*
25041 GTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGTCGAAGAACCTGACCGACGGTATTAG
195 GTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGTCGAAGAACCTGACCGACGGTATTGG
* *
25106 GATTCCGGCGATTAGGGGCAGAGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGG
260 GGTTCCGGCGATTAGGGG--GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
25171 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
323 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTG
* * * *
25236 AGATTTTACAGGTTTGCTATAGTAGCAATTAAAATGTCTAAAATGGGGACATTTTTTTCAAATGG
388 AGATTTTACAGGTTTGCTATAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
25301 TCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAA
453 TCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
25365 GGATCATGTATACCAAGTTTGGGCCCAAAACTCATTTTGAAAAAATTTTAAAAAAATCCCGAACC
518 GGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC
* * * *
25430 GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTTGTCTAGCCGTGAAACTTCACATGAA
583 GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
*
25495 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGA
648 GGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGA
* * * *
25560 AGATGTGCCTAAACCCACCTACCACCCTATGGATCCATGGCTTACGCATCCTGCCTCTCTGGCCG
713 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * * * * * *
25625 GCGTAGTGCTTGCCGGCCCGCACATTTCATCAGTTGGCTTAGGCATACGGAGTTCAATCCTAGTC
778 GCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
* * *
25690 TAAGATCAGACCAAACTGAGGGTTGTGGTAGTAGGATCAGCA
843 TAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCAGCA
* * * * * * *
25732 GCACGCAGGGGGGGACTCGGCCGATCCCCGGCTTGCACGTCCTGCCCTTATGGGT-GGCTAAGTG
1 GCACGCAGGGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTA-CGGTCGGCTGAGCG
* * * **
25796 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGCATACGGG
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
* * *
25861 GTTCATTCCCAGTGTCA-ATC-AGACCGGACC-GAGGGTTGCTGGTGCACATGCTAGGCTTGGGC
130 GTTCATTCCCAGTGTAAGATCGA-ACC-GACCTGAGGGTTGCAGGTGCACATGCTGGGCTTGGGC
* * * ** * *
25923 ATGTGCTGGTGCAGCATTTTTTTTTCACCCGGGGCATCATCACCGGAGAACCTTACCGACGGTAT
193 ATGTGCTGGTGCCGCATTTTTTTTT-GCCCGGGGCACCATCGTCGAAGAACCTGACCGACGGTAT
* * * *
25988 TGGGGTTACGGCGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTG
257 TGGGGTTCCGGCGATTAGGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
26053 GTCCTTATATTGTCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
322 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
*
26118 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
387 GAGATTTTACAGGTTTGCTAT-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
26183 GGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATA
451 GGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATA
* * * *
26248 CAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCTGA
515 CAAGGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGA
* * * *
26313 ACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGACACTTCACAT
580 ACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * *
26378 GAAGGCTTGAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
645 GAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATA
* *
26443 GGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
710 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * *
26508 CCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCTA
775 CCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
26573 GTCTAAG
840 GTCTAAG
26580 CATACGGAGT
Statistics
Matches: 1528, Mismatches: 190, Indels: 33
0.87 0.11 0.02
Matches are distributed among these distances:
883 122 0.08
884 241 0.16
885 435 0.28
886 494 0.32
887 6 0.00
888 58 0.04
889 169 0.11
890 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (884 bp):
GCACGCAGGGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTACGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
TTCATTCCCAGTGTAAGATCGAACCGACCTGAGGGTTGCAGGTGCACATGCTGGGCTTGGGCATG
TGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGTCGAAGAACCTGACCGACGGTATTGGG
GTTCCGGCGATTAGGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGA
TTTTACAGGTTTGCTATAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCATGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTA
AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
TTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
TAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
GATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCAGCA
Found at i:29239 original size:26 final size:26
Alignment explanation
Indices: 29187--29239 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29177 GTTGACTTTG
* * *
29187 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCACTCCCAGTGTAA
*
29213 GCATATGGAGTTCACTCCCAGTGTAA
1 GCATACGGAGTTCACTCCCAGTGTAA
29239 G
1 G
29240 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTGTAA
Found at i:30432 original size:892 final size:889
Alignment explanation
Indices: 27938--31773 Score: 4674
Period size: 880 Copynumber: 4.3 Consensus size: 889
27928 AAAAAATTTT
* *
27938 AAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
** * *
28003 ATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCATAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
28068 CACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGTCTGCT
131 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCT
* ** * * * *
28133 CGTTTCGTCAGTTATCTTAGGCATACAGAGTTCAGTCCTAGTCTAAGATCGGATCGGACCGAGGG
196 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGG
* * * * *
28198 TTGTGGCAGCAGGATTGGCAGCA--CAGAGGGGGGACCCGATCGATCCCCGACTTGTCCATCTTG
261 TTGCGGCAGCAGGATCGGCAGCACGCAG-GGGGGGACCCGATCGATCCCCAACTTGTGCATCCTG
* * * * * *
28261 CCTCTCCGGCCGGCTGAACG-TCCGCACGCTCATTTCAT-GG--G--TTGGCATACAGAGTTCAT
325 CCCCTCTGGCCGACTGAGCGCT-CGCACGCTCGTTTCATGGGTTGACTTGGCATACGGAGTTCAT
** * * * * * * *
28320 TCCCAGTGAAAGCATACGGT-GTTCATTTCCAGTGTAAGATCGAACCGGAACAAGAGTTGCGGGT
389 TCCCAGTCTAAGCATAC-GTAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGGT
* * * * * ** * * *
28384 GCACATACTGGGCTCAAACATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGGCACCATCTCTGGA
453 GCACATGCTAGGCTCAAGCATGTGCTAG-CCCACATTTTTTTTCGCCCGGGGCACCATCACCGGA
* * * ** * *
28449 GCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCTAGCGATTGGGGGGGGAGGGGGTGTTCG
517 GCATCGTCGAAGAACCTGACCGACGGCATT-GGGTTCCGGCGATTGGGGGGCG-GGGGGTGTGCG
* *
28514 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAGT-GCCCCCACTCCCTCATCAAACCT
580 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTA-TCCCTCATCAAACCT
* * *
28578 TGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAA
644 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
*
28643 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCT
709 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCT
28708 GAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
774 GAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
28773 CCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAG-TTTAGAAAAT-AGTG
838 -C--CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTA-AAAATCA-TG
* * *
28828 --AAATAGAAAACCAGTCATCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
28891 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
28956 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCT
131 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCT
* * * **
29021 CGTTTTGTCGATTGGCTTAGGCATACAGAGTTCATT-CTCAGTCTAAAATTGGACCAGACCGAGG
196 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCT-AGTCTAAGATCAGACCAGACCGAGG
* * *** *
29085 ATT------GC-GG-T----AGCACACA-GGGGGGACCCGATCGATCCCTGGCTGGTGCATCCTG
260 GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGGACCCGATCGATCCCCAACTTGTGCATCCTG
*** ** * * **
29137 CGTTTCTGGTAGACTGAGCGCCCGAACGCTCGTTTTGTGGGTTGACTTTGGCATACGGAGTTCAT
325 CCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTTGAC-TTGGCATACGGAGTTCAT
* * * * * * *
29202 TCCTAGTTTAAGCATATGGAGTTCACTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGTTG
389 TCCCAGTCTAAGCATACGTAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGGTG
* * *
29267 CACATGCTAGGCTCAAGCATGTGCT-GCTCCCCTATTTTTTTTTTGCCCGGGGCACCATCATCGG
454 CACATGCTAGGCTCAAGCATGTGCTAGC-CCAC-A-TTTTTTTTCGCCCGGGGCACCATCACCGG
* * * * ***
29331 AGCATCGCCGGAGAACCTGACCGGCGGTATTGCGGTTCCGGCGATTAAAGGGCGGGGGGGTGTGC
516 AGCATCGTCGAAGAACCTGACCGACGGCATTG-GGTTCCGGCGATTGGGGGGC-GGGGGGTGTGC
29396 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
579 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACC
* * * * *
29461 TCAAGAATTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
643 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
* *
29526 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATTCTGTACACTTCGAGTTTTTAGC
708 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
**
29591 TGAACGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
773 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
29656 CCTAAAAAAATTTTAAAAATATCCCGAACCGTAAAAAGTTTTAAAAATCATG
838 CCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
*
29708 AAAAATCGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
29773 ATGTACAAGCCATAAAAATGGCATTGGTATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
29838 C-CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG-CTGGTGTAGTGCCCGCCCGCCCGC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTC-GGTGTAGTGCCCGCCCGCCCGC
*
29901 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGG
195 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
* * * * * *
29966 GTTACGACAGCAGGATCGGTAGCACGTAGGGGGGGTCCC-AACTGATCCCCAACTTGTGCATCCT
260 GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGGACCCGATC-GATCCCCAACTTGTGCATCCT
* * * *
30030 GCCCCTCTAGCCGACTGAGTGCTCGCATGCTCGTTTCATGGGTTGACTTCGACATACGGAGTTCA
324 GCCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCA
* * * * *
30095 TTCCCAGGTCCTAAGCA-A-GTAGTTCATTCCAAGTTTAAGATTGGACCTGATCGAGGGTTACGG
388 TTCCCA-GT-CTAAGCATACGTAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGG
* * ** * *
30158 GTGCACATGTTGGGGCTCGGGCCTGTGCTAGCCCACATTTGTTTTCGCCCGGGGCACCATCACCG
451 GTGCACATGCT-AGGCTCAAGCATGTGCTAGCCCACATTTTTTTTCGCCCGGGGCACCATCACCG
* * *
30223 GACCATCGTCGAAGAACCTAACCGATGGCATTGAGGTTCCGGCGATTGGGGGGCGGGGGGTGTGC
515 GAGCATCGTCGAAGAACCTGACCGACGGCATTG-GGTTCCGGCGATTGGGGGGCGGGGGGTGTGC
* * *
30288 GCACATGATGTGTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCTATCCCTCACCAAACCT
579 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCT
* * * * *
30353 CGAGAACTCCCACCTCTTTAAAAAGCATTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
644 CGAGAACTCACACCCCCTTAAAAAGCA-TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
* * * **
30418 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAAAATTTGAGTTTTTAGC
708 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
* *
30483 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACG
773 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
30548 CCTTTTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTA
838 CC---TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
* * ** *
30603 AAAAATAGAAAACGAGTCGCCTTGCCATGAAGCTTCACATGAAGGCAGAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
30668 ATTTACAAGCCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * ** *
30733 CACCCTATTGATCCACGACTTGCGCATCTCAG-CTCTCTGGACGGCATAGTGCCGGCCCGCCCGC
131 CACCCTATCGATCCACGGCTTGCGCATC-CCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGC
* * * * * *
30797 TTGTTTCATTGGTAGGCTTAGGTATACAGAGTTCATTCCTAGCCTAAGATCAGACCAGACCGAGG
195 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
* ** * * * * * **
30862 GTTGCGGCAGTAGGATCAACAGCACGCCGAGGGGGACCCGGTAGATCCCCAGCTTGCACATCCTG
260 GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGGACCCGATCGATCCCCAACTTGTGCATCCTG
* * *
30927 CCCCTCTGGTCGACTGAGCACTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
325 CCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCAT
* * ** *
30992 TCCCAGTCTAAGCATATAG-AGTTCATTCCCAGTGTAAGACCATATCAGACCGAGGGTTACGGGT
389 TCCCAGTCTAAGCATA-CGTAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGGT
* * ** * *
31056 GCACATGCCAAGCTCGGGCATGTGCTGATGCCGCA-TTTTTTTTTCGCCTGGGG---CA--A-C-
453 GCACATGCTAGGCTCAAGCATGTGCT-A-GCC-CACATTTTTTTTCGCCCGGGGCACCATCACCG
* * * *
31113 -ATCATCG--GAA-AACCTGACCGACGGCATTGGGTTTTCGGTGATT----GGC--GGGGTGTAC
515 GAGCATCGTCGAAGAACCTGACCGACGGCATTGGG-TTCCGGCGATTGGGGGGCGGGGGGTGTGC
* *
31168 GCACATGATGT-CTGATGGGTGCTGGTACATGTCCCTTATATTGGCCCCCTATCCCTCATCAAAC
579 GCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
* *
31232 CTTGAGAACTCACACCCCCTTAAAAAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
642 CTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
* *
31297 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAG
707 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAG
* * ** * * * *
31362 CTGAATTGTTTTGAGCATGTGAAAAAAAATATAAGGATCACAG-CTACCATGTTTGGCGCCAAAA
772 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAA
* *
31426 CTCCTCCTGAAAAAATTTTAAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATCATG
836 ---CTCCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
* *
31483 AAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
31548 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
31613 CACCCTATCGATACACGGCTTGCGCATCTCGCCTCT-TCGATCGGTGTAGTGCCCGCCCGCCCGC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT-GGTCGGTGTAGTGCCCGCCCGCCCGC
* * * **
31677 TCGTTTTGACGGTTGGCTTAGGCATACAGAG-TCATTCCCAGTCTAAGATCAGACCAGATTGAGG
195 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
* * * * * *
31741 GTTGTGGTAGTAGGATTGACAGCATGCAGGGGG
260 GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG
31774 ACCCNNNNNN
Statistics
Matches: 2551, Mismatches: 329, Indels: 143
0.84 0.11 0.05
Matches are distributed among these distances:
876 60 0.02
877 2 0.00
878 2 0.00
879 58 0.02
880 474 0.19
881 171 0.07
882 221 0.09
883 180 0.07
884 144 0.06
885 3 0.00
886 26 0.01
887 7 0.00
888 232 0.09
889 7 0.00
891 38 0.01
892 216 0.08
893 78 0.03
894 136 0.05
895 201 0.08
896 271 0.11
897 22 0.01
898 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGG
TTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGGACCCGATCGATCCCCAACTTGTGCATCCTGC
CCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGTAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGGTGCA
CATGCTAGGCTCAAGCATGTGCTAGCCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAGCAT
CGTCGAAGAACCTGACCGACGGCATTGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGAAAA
AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
Found at i:31007 original size:26 final size:26
Alignment explanation
Indices: 30977--31029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30967 GTTGACTTAG
*
30977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
31003 GCATATAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31029 G
1 G
31030 ACCATATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:37249 original size:12 final size:12
Alignment explanation
Indices: 37232--37262 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
37222 GAGGGATAGG
37232 GGGCCAATATAA
1 GGGCCAATATAA
37244 GGGCCAATATAA
1 GGGCCAATATAA
37256 GGGCCAA
1 GGGCCAA
37263 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:39213 original size:26 final size:26
Alignment explanation
Indices: 39184--39236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
39174 CCGATCCGAT
39184 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * *
39210 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
39236 C
1 C
39237 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:40531 original size:884 final size:886
Alignment explanation
Indices: 38312--44631 Score: 7321
Period size: 880 Copynumber: 7.1 Consensus size: 886
38302 CCGGTCCGAT
* * * *
38312 CTTACACTGGGAATGAACTCCATATGCCT-AGTCAACCCACGAAACGAGCGTGCCGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** ** * * * *
38376 CGGCTAGAGGGGCGGGATGCACAAGTTGGGGATCGGCCGAGTCCGCCCTGCGTGCTGGCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * * *
38441 GCTGCCACAACCCTCGGTCTAGTCC-ATTCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTACCACAACCCTCGATCTGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
38505 TCGATG-AACGATCGGGGCCGGGCGAGCACT--GTCCGGCCAGGATGAGGCGGGATGCGTAAG-C
195 -CGACGAAACGAGC-GGG-CGGGCGGGCACTACGT-CGGCCA-GA-GAGGCGGGATGCGCAAGCC
38566 GTGGATCGATAGGGTGGTAGG-GGGTTTTAGGCACATCTTCATATTTCTGCCAT-CACAATGCCA
254 GTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCCATGC-CAATGCCA
38629 TTTTTTATGGCTTGATAAATTCATACCAATGGTCCCTTAAGCCTTTCATGTGAAGTTTCATGG-A
317 -TTTTTATGGCTTG-TAAATTCATA-CAATGGTCCCTTAAGCC-TTCATGTGAAGTTTCATGGCA
* * * * * * *
38693 AGACGACTTGTTTTTTATTTTACA-GATTTTTTGAAACTTTTTACGGGTTTGAGATTTTTGTAAG
378 AGACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTTAAA
* * *
38757 ATTTTTT-AGAAAAGAGTTTT-GCCCC-AACATGGTAGATGTGATCCTTGTATTTTTGTTGGCAT
441 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * *
38819 GCACAAAACAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTC
505 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
38884 CCCATTCCAGACACTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTCAGGG
570 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
38949 GGTGTGAGTTCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCA
635 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
39014 TCGCACATCATGTGCGCACACCCCCTGCCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAAG
700 TCGCACATCATGTGCGCACACCCCC-ACC-CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGG
*
39079 TTCTCCAATGATGCTCCAACGATGGTGCCCCGGGTGAAAAAAAATAC-GGCACCAGCACATGCCC
763 TTCTCC---GA-GCT----CGATGGTGCCCCGGGCGAAAAAAAATACTGGCACCAGCACATGCCC
* * * * *
39143 GTGCCCATCATGTGCACCCGTAACCCTTGGTCCGATCCGATCTTACACTAGGAATGAACTCCGTA
820 GAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
39208 TG
885 TG
* * * * **
39210 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
39275 CGACCAGAGGGGCAGAATGCGCAAGCCCGGGATCGATCAGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCCT
* *** * * ** * *
39340 GCTGCTGTAACCCTTGGTCCAGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-
* ** * * *
39405 CAACGAAACGAGCGGGCACGTGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGAT
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
39470 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATA
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * * *
39535 GCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGGCGATTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
39600 TTCTATTTTTCATGATTTTTGAAACCTTTTACGATTCAGGATTTTTTTAAAATTTTTTTAGAAGG
390 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
* * * *
39665 AGTTTTGGCCCCACAGTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
39730 GCTAAAAACTCAAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGCCCCCATTTCAGATACT
520 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
39795 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
39860 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
39925 GTACACCCTCCACCCCCCAATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCG-G-T-GATG
715 GCACACCC-CCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCTCGATG
* * *
39987 GTGCCCCGGTGTGAAAAAAAATACT-GCACCAGCGCATGCCCGAGCCCAGCATGTGCACCCATAA
779 GTGCCCCGG-GCGAAAAAAAATACTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAA
* * * *
40051 CCCTCGGTCTGGTCTGATCTTACACTGGGAATTAACTCCATATG
843 CCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * ** * *
40095 CTTAGCCTTGGAATGAACTCCGTAAACCTAAGTCAACCCACGGAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
40160 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCATGCTGTCAATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * *
40225 ACTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG-ACTCTGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
40289 CATTGAAATGAGCGGACGGGCGGGCACTACGTCGGTC-GAAGAGGCGAGATGCGCAAGCCGTGGA
196 GA-CGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAG-AGAGGCGGGATGCGCAAGCCGTGGA
*
40353 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
40418 GGCTTGTAAATTCATACAATGGACCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
40483 TCTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGGTTTTTTTAAAATTTTTCCAGGAG
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
* * * * ** * * *
40548 GAGTTTTGGCGCCAAACATGGTAGATGTGATCCTTGTGTTTTTGTTCACATGCTCAAAACATTTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
40613 AGCTAAAAACTTGATGTGTACAGGATTTTGTGAGCATTTGAAAAAAATGTCCCCATTTTAGACAC
519 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
40678 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAACTACTCTTTAAGGGGGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
40743 AGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGACATGTACCAGCACCCATCGGACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * * *
40808 CGCACA----C-CCCGCCAATCACCGAAACCCCAATGCCGTCGGTCAGGTTTTTC-A-AT-GATG
714 CGCACACCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCTCGATG
* * * *
40865 GTGCCCCAGGCGAAAAAAAA-ATGTGGCACCAGCACATGCCCGAGCTCGGCATGTGCACCCGTAA
779 GTGCCCCGGGCGAAAAAAAATA-CTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAA
* *
40929 CCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCTGTATG
843 CCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
40973 CTTAGA-TCGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAACGAGCGTACGTGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
41037 TCGGCCAGAGGGGCAGGAT-CTGCAAGCCAGGGATCGATCGGGTCCCCCTCGGCGTGCTGTCGAT
65 TCGGCCAGAGGGGCAGGATGC-ACAAGCCGGGGATCGATCGGGTCCCCC-CTGCGTGCTGCCAAT
* * * * * *
41101 CCTACTGCCGCAACCCTC-AGTCTGGTCCGATCTTAGGCTAGGAATGAACTCTGTATGCCTAAGC
128 CCTGCTACCACAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * **
41165 CTACCAACGAAACGAGCGGGCAGGCCGGCACTATGCCGACCAGAGAGGCGACATGCGCAAGCCGT
192 C-AACGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * * ** *
41230 GGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCACACCAATGTCATTTT
256 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* ** * *
41295 TATGGCTTGTAAATTCATACAATTGTCCCTTCTGCCTTCATGTGAAGCTTCATGGCAAGGCGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * * * *
41360 CATTTTCTATTTTTTACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAA
386 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAG
* * * * *
41425 AAGGCGTTTTCGCCCTAAACTTGGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAACAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
41490 TTCAGCTAAAAACTTGAATTTTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
516 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
41555 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGAGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
41620 TCGAGGTTTGATGAGGGAT-GAGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCA
646 TCGAGGTTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** *
41684 TGTGCGCACACCCCCCCGCCCCCATAATCGCCAGAACCTTAATGCCGCCGGTCAGGTTCTCCGAT
710 TGTGCGCACACCCCCAC-CCCCC--AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---
* * * * * *
41749 GATGGTCCGGTGATGGTGCCCTGGGCGAAAACAAAT-GTGGCACTAGCACATGCCCGAGCCCAAC
769 GA-GCT-C---GATGGTGCCCCGGGCGAAAAAAAATACTGGCACCAGCACATGCCCGAGCCCAGC
* * * * * **
41813 ATGTGCACCCATAACCCTCGAT-CAGTTCGATCTTACACTTGGAATGAACTATGTATG
829 ATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * * * *
41870 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAAAGAACATGCGAGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** * *
41935 CGGCTAGAAGGGCAGGATGCACAAGTTGGGGATC-AGTCGGGAGCCCCCCTACGTGCTGCCAATC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-TCGGG-TCCCCCCTGCGTGCTGCCAATC
* * *** * * *
41999 CTACTGCTGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
129 CTGCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
42064 ATCGACGAAACGAGCGGGCGGGCGGGCACTAAGCCAGCCAGAGAGGCGGGATGCGGAAGCCGTGG
194 A-CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
42129 ATCGATAGGG-GGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCATACCAATGCCATTTTTA
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
42193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TCATGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * **
42257 TTTTCGATTTTTCATGATTTTTAAAACTTTTTA-GGTTTAGGATATTTTTT-AAATTTTTTC---
388 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT-TTTTTTAAAATTTTTTCAGA
* * * **
42317 AGGAGTTTGGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACGT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
42382 TCAGTTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
42447 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAATTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
42512 TGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * **
42577 TGCGCACACCCCCCCCGCCCCAATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
712 TGCGCACACCCCCACC-CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-G
* * * *
42642 CTCCGGTGATGGTGCCCCGAGCGAAAAAAAAATAC-GGCAGCAGCACATGCCTGAGCCTAGCATG
772 CT-C---GATGGTGCCCCGGGCG-AAAAAAAATACTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
42706 TGCAACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAGTGAACTCCATATG
832 TGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * *
42761 CTTAGACTAGGAATGAATTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
42826 CTGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGGGTCCGCCCTGCATGCTG-----CC-
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * *
42885 G-T-----AACCCTCGGTCTGGTCCGATTTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAT
131 GCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-
* * *
42944 TGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGAT
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
43009 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCACGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * *
43074 GCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTGGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
43139 TTCTA--TTTCACT-ATTTTCT-AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
390 TTCTATTTTTCA-TGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
*
43200 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAT
43265 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
43330 ACTTTAATGGCTACTGGTAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
43395 CAAGGTTTGATGAGGGAGT-GGGGG-CACTATAAGGGCCAAGTATCACCACCCATCGCACATCAT
647 CGAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
43458 GTGCGGACACCCCCTACCCCCCCAATCG-CTGGAACCCCAATGCCGTCGATCAGGTTCTTCGACG
711 GTGCGCACACCCCC-A-CCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC-TC--CG
* * *
43522 ATGCTCCAGAGATGGTGCCCCAGGCAAAAAAGAAAT-CTGGCACCAGCACATGCCCGAGCCCAGT
770 A-GCT-C---GATGGTGCCCCGGGCGAAAAA-AAATACTGGCACCAGCACATGCCCGAGCCCAGC
** * * * * * *
43586 ATGTGCACCCACAACTCTTGTTCCGGTTCGATCTTACACTGGCAATGAACACCGTATG
829 ATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
43644 CTTAGACTGGGAATGAACTCTGTATG-C----T-AACCCACGAAACGAGTGTGTGGGCGTTCA-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * **
43702 CTGGCCGGAGAGGCAAGATGAACAAGTCGGGGATCGATCGGGTCCCCCCTTTGTGCTGCCAATCC
66 C-GGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCC
* * * * * * *
43767 TGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCCAAGACAA
130 TGCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * * *
43832 TTGACAAAATGAGCAGGCGGCCGGGCACTACACCGGCCAGAGAGGTGGGATGCACAAGCTGTGGA
195 -CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * **
43897 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
*
43962 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
44027 TTTCTATTTTTCATAATTTTT--AA------A---------ATTTTTTAAAAATTTTTTCTGAAA
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
* *
44075 GAGTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
44140 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
44205 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
44270 ACGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTA
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
44335 CTCACACCCCCCCTCCGCCCCCCTAATCGTCGGAATCCTATTGCCGTCGGTCAGGTTCTCTGGCA
714 CGCACA----CCC-CCACCCCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CG
*
44400 ATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATAC-GGCACCAGCA-ATGCCTGAGCCCAGC
770 A-GCT----CGATGGTGCCCCGGGCG-AAAAAAAATACTGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * * * * * *
44463 ACGTGCACTCGCAACCCTTGATCCAGTCTGATCTTACACTAGGATTGAACTTCATATG
829 ATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * * * * * *
44521 CTTTGACTAGGACTAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC--GCTC-
* * * * * *
44586 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
63 A-GTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGT
44632 GGTAGGTTGG
Statistics
Matches: 4686, Mismatches: 611, Indels: 261
0.84 0.11 0.05
Matches are distributed among these distances:
872 1 0.00
873 152 0.03
874 115 0.02
876 2 0.00
877 168 0.04
878 430 0.09
879 163 0.03
880 507 0.11
881 5 0.00
882 111 0.02
883 330 0.07
884 504 0.11
885 232 0.05
886 5 0.00
887 33 0.01
888 30 0.01
889 292 0.06
890 64 0.01
891 380 0.08
892 5 0.00
894 66 0.01
895 161 0.03
896 332 0.07
897 272 0.06
898 145 0.03
899 173 0.04
900 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCAATCCT
GCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCTCGATGGT
GCCCCGGGCGAAAAAAAATACTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCC
TCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
Found at i:41894 original size:26 final size:26
Alignment explanation
Indices: 41844--41896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
41834 TCAGTTCGAT
* *
41844 CTTACACTTGGAATGAACTATGTATG
1 CTTACACTGGGAATGAACTACGTATG
* *
41870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTACGTATG
41896 C
1 C
41897 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:42764 original size:26 final size:26
Alignment explanation
Indices: 42735--42787 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
42725 CCGGTCCAAT
* *
42735 CTTACACTGGGAGTGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
42761 CTTAGACTAGGAATGAATTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
42787 C
1 C
42788 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:43658 original size:26 final size:26
Alignment explanation
Indices: 43618--43671 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
43608 CCGGTTCGAT
43618 CTTACACTGGCAATGAACACCGTATG
1 CTTACACTGGCAATGAACACCGTATG
* * * *
43644 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGCAATGAACACCGTATG
43670 CT
1 CT
43672 AACCCACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTACACTGGCAATGAACACCGTATG
Found at i:46045 original size:26 final size:26
Alignment explanation
Indices: 46009--46061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
45999 TGGGTCCGAT
*
46009 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
46035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
46061 C
1 C
46062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:47032 original size:886 final size:887
Alignment explanation
Indices: 45089--47033 Score: 2621
Period size: 886 Copynumber: 2.2 Consensus size: 887
45079 CACACCCCCT
* * * * *** *
45089 GCATGTGCACCAGCAACCCTCGGTCCGATCCGAT-TTACACTGGGAATGAAC-CCTGTATGCTTA
1 GCATGTGCACCCGCAAACCTCGGTTCGGTCCGATCTTACACCCAGAATGAACTTC-GTATGCTTA
* * * * * *
45152 AACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCCACC
65 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGC
* * * ** * * * *
45217 CATAAGGGCAGGACATGCAAGCCGAGGATCGGCTGAGTCCTCCCCTACGTGCTGTCGATCCTACT
130 CAGAGGGGCAGGATACACAAGCCGGGGATCGGCTGAGTCCCCCCCTACGAGCTATCGATCCTACT
* * * *
45282 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGATTGAACTACGTATGCCTAAGCCAACTGA
195 ACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCGA
* * * * * *
45347 TGAAATGTGCGGGCCAGCAGGCACTACGCCAGCCAGAGAGGCAGGATGCGTAAGCCATGGATCCA
260 CGAAACGAGCAGACCAGCAGGCACTACGCCAGCCAGAGAGGCAGGATGCGCAAGCCATGGATCCA
*
45412 TAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCT
325 TAGGGTGATAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCT
* *
45477 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCTAGACGACTCATTTTC
390 TGTAAATTCATACAATGGTCACTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCATTTTC
* * * * * *
45542 TATTTTTCATGATTTTTAAAACTTTTTACGGTTTAGGATTTTTTTAAAATTTTTTTAGAATGAGT
455 TATTTTTCACGATTTTTAAAACTTTTTACGCTTCAGGATTTTTTTAAAATTTTTTCAAAAGGAGT
* ***
45607 TTTGGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
520 TTTGGCCCCAAACTTAAAAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
45672 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTA
585 AAAAACTCAAAGTGTACAGCATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
*
45737 ATGGCTACTCACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCT
650 ATGGCTACTCACAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGCT
* * * * *
45802 TTGATGAGGGATAGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCTCACATCATGTGCTCAC
715 TTGATAAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGCAC
* * * * * *
45867 ACCCCCCTCTGCCCCCTAATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGGTGGTGC
780 ACCCCCCTCTACCCCCTAATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTGC
*
45932 CCCAGGCAAAAAAAAATACAACACCAGCACATGCCCGAGCCCA
845 CCCAGGCAAAAAAAAATACAACACCAGCACATGCCCAAGCCCA
* * * ***
45975 GCATGTGCACCCGTAACCCTCGGTTGGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAG
1 GCATGTGCACCCGCAAACCTCGGTTCGGTCCGATCTTACACCCAGAATGAACTTCGTATGCTTAG
* * *
46040 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTGCGGGCGCTCAGCC-GAC
66 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCC
* * * * * *
46104 ACGAGGGGCAGGATGCACAATCCAGGGATCGGCCGAGTCCCCCCCTATGAGCTATCGATCCTGCT
131 A-GAGGGGCAGGATACACAAGCCGGGGATCGGCTGAGTCCCCCCCTACGAGCTATCGATCCTACT
* * *
46169 GCCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
195 ACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCGA
** * * * * * *
46234 CGAAACGAGCAGACGGGCGGGCACTACGCCGGCCATAGAGGCGGGATGCGCAAGCCGTGGATCGA
260 CGAAACGAGCAGACCAGCAGGCACTACGCCAGCCAGAGAGGCAGGATGCGCAAGCCATGGATCCA
* * *
46299 TAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTCTATCATGCCAATGCCA-TTTTATGGCT
325 TAGGGTGATAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCT
* * *
46363 TGTAAATTCATACAATGGTCACTTAAGCCTTCATTTGAAGTTTCATC-GCAAGATGACTCGTTTT
390 TGTAAATTCATACAATGGTCACTTAAGCCTTCATGTGAAGTTTCA-CGGCAAGACGACTCATTTT
* * *
46427 CTATTTTTTACGATTTTTAAAACTTTTTACGCTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAT
454 CTATTTTTCACGATTTTTAAAACTTTTTACGCTTCAGGATTTTTTTAAAATTTTTTCAAAAGGAG
* **
46492 TTTTTGCCCCAAACTTAAAATTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
519 TTTTGGCCCCAAACTTAAAAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
46557 TAAAAACTGAAATTGTACAGCATTTTGGGACCATTTGAAAAAAGTG-CCCCATTTCAGACACTTT
584 TAAAAACTCAAAGTGTACAGCATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTT
** *
46621 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGG
649 AATGGCTACTCACAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGC
46686 TTTGATAAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGC
714 TTTGATAAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGC
* * * *
46751 ACACCGCCC-CTACCCCTTCAATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGG
778 ACACCCCCCTCTACCCCCT-AATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGG
** * * *
46815 TGCTTC-GG-ATGAAAAAAAATACAGCAGCAGCAGATGCCCAAGCCCA
842 TGCCCCAGGCA--AAAAAAAATACAACACCAGCACATGCCCAAGCCCA
* *
46861 GCATGTGCACCCGCAAACCTCTGTTCGGTTCGATCTTACACCCAGAATGAACTTCGTATGCTTAG
1 GCATGTGCACCCGCAAACCTCGGTTCGGTCCGATCTTACACCCAGAATGAACTTCGTATGCTTAG
* ** * * * *
46926 ATTGGGAATGAACTCTATATGCCTAAGTCAATCCATGAAACGAGCATACGAGCGCTCAGCCAGCC
66 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCC
* * *
46991 AGAGGGGCAGAATACACAAGCCGGGGATCGACTGGGTCCCCCC
131 AGAGGGGCAGGATACACAAGCCGGGGATCGGCTGAGTCCCCCC
47034 TTGCGTGCAC
Statistics
Matches: 918, Mismatches: 132, Indels: 18
0.86 0.12 0.02
Matches are distributed among these distances:
884 1 0.00
885 99 0.11
886 525 0.57
887 292 0.32
888 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (887 bp):
GCATGTGCACCCGCAAACCTCGGTTCGGTCCGATCTTACACCCAGAATGAACTTCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCC
AGAGGGGCAGGATACACAAGCCGGGGATCGGCTGAGTCCCCCCCTACGAGCTATCGATCCTACTA
CCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCGAC
GAAACGAGCAGACCAGCAGGCACTACGCCAGCCAGAGAGGCAGGATGCGCAAGCCATGGATCCAT
AGGGTGATAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCACTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCATTTTCT
ATTTTTCACGATTTTTAAAACTTTTTACGCTTCAGGATTTTTTTAAAATTTTTTCAAAAGGAGTT
TTGGCCCCAAACTTAAAAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCAAAGTGTACAGCATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA
TGGCTACTCACAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGCTT
TGATAAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGCACA
CCCCCCTCTACCCCCTAATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTGCC
CCAGGCAAAAAAAAATACAACACCAGCACATGCCCAAGCCCA
Found at i:47221 original size:26 final size:26
Alignment explanation
Indices: 47192--47244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
47182 CCGGTCTGAT
47192 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
47218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
47244 C
1 C
47245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:48045 original size:26 final size:26
Alignment explanation
Indices: 48009--48061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
47999 TTGGTCTGAT
*
48009 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
*
48035 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
48061 C
1 C
48062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:49737 original size:895 final size:894
Alignment explanation
Indices: 47355--53262 Score: 6838
Period size: 895 Copynumber: 6.6 Consensus size: 894
47345 CCTGCTACCA
* * * *
47355 CAACCGATGAAATGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGT
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * * *
47420 GGATCGATAGGATGGTAGGTGCGTTTAGGCACATCTTCATATTTCTATCGTGCCAATGCCATTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
** *
47485 CGTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
131 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
47550 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTTAG
196 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAA
* *
47615 AAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
261 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
47680 TTCAGCTAAAAACTTGAAGTGTACAGGATTTCGTGACCATTTGAAAAAACTGTCCCCATTTTAGA
326 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
47745 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
391 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
47809 TCAAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACAAGCACCCATCCCACATCAT
456 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
47874 GTGCGCACA------CCCCCTAATCACCGAAACCCCAATGCCGCTGGTCAGG---T-------T-
521 GTGCCCACACCCCCCCCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * ** *
47922 CTCCGACGATGGTGCCCTGAGCGAAAAAAAATGTGGCACCAGCACATTTCTGAGCCCAGCATGTG
586 CTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* **
47987 CACCCGCAA-CC-C---TTGGTCTGATCTTACACTGGGAATGAACTCTATATGCTTAGACTGGGA
651 CACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * * * *
48047 ATGAACTCCATATGCCTAAGTCAACCCACCAAACGAGGGTGCGAGCGCTCAACTGGCCAGAGGGG
716 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
48112 CAGGATGCACAAGTCAGGGATCG-GTCGGGTCCCCCCTACATGCTGCC-ATTCTAGCTGTCACAA
781 CAGGATGCACAAG-CAGGGATCGACTCGGGTCCCCCTTGCGTGCTGCCGATCCTA-CTGCCGCAA
** * * * * *
48175 CCCTTGGT-CTAGGCTGATCTTAGACTGGGAATAAACTCCGTATCCCTAAGC
844 CCCTCAGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
* * * * *
48226 CAACCGACAAAATGAGTGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGCATGCGCAAGCCGT
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* *
48291 GGATCGACAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
*
48356 TATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACT
131 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
** *
48421 CGTTTTCTATTTTTCACAATTTTTGAAACCTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAA
196 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAA
* * * *
48486 AAAGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
261 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
48551 TTCACCTAAAAACTCGAAGTGTTCCAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAATTCAGA
326 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
48616 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
391 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * * *
48681 TTAAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGCACCAGCTCCCATCTCACATCAT
456 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-
* * * *
48746 GTGTGCCCAC-CCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
520 -TGTGCCCACACCCCCC-CCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * *
48810 ATGCTCCGACGATGGTGCCCAGGGTG-AAAAAAATGTAGCACCAGTACATGCCCGAGCCCAGCAT
583 ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
48874 GTGCACCCGCAACCCTCGGTTTGGTCCGATCTTACAGTGGGAATGAACTCCGTTTGTTTAGACTG
648 GTGCACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
48939 GGAATGAACTCTGTATGACTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAG
713 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAG
* * *
49004 GGGCAGGATGCACAAGTAGGGGATCGACT-GGGTCCCCTCTTGTGTGCTGGCGATCCTACTGCCG
778 GGGCAGGATGCACAAGCA-GGGATCGACTCGGGTCCCC-CTTGCGTGCTGCCGATCCTACTGCCG
* * * * *
49068 CAACACTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAAC
841 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
* * * * * *
49122 CAATCGACGAAACGAGCGGGCGGGCGAGCACTACGCCGGCCAAAGAAGCAGGATGCACAAGCCGT
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * *
49187 GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
*
49252 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACT
131 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * ** *
49317 CATTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAA-TTTTTGAA
196 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAA
*
49381 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
261 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
49446 TTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
326 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
49511 CACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
391 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
49576 TCGAGGTTTGATGAGGGATAGGGGCCCAATATAAAGGCCAAGTACCAGCACCCATCGCATATCAT
456 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
49641 GTGCCCACACCCCCTACCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
521 GTGCCCACACCCCC-CCCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
*
49706 GCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGT
585 GCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
49771 GCACCCGTAACCCTCGGTTGGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
650 GCACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
49836 AATGAACT-TCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTTAGTCGG-CACGAG
715 AATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCA-GAG
* * * * * * * * *
49899 GGGCAGGATGCGCAAGCCAAGGATCGGC-CGGGTCCCCCCTTGTGAGCTACCAATCCTGCTGCCA
778 GGGCAGGATGCACAAG-CAGGGATCGACTCGGGT-CCCCCTTGCGTGCTGCCGATCCTACTGCCG
* * * * *
49963 CAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAGTGAACCCCATATGCCTAAAC
841 CAACCCTCAGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
** * *
50017 CAACCGACGAAACGAGC-GGCTGGGCGGGCACTACGCCGGTGATAAAGGCGGGATGCGCAAGCCG
1 CAACCGACGAAACGAGCGGGC-GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
** ** *
50081 TGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTCTGTCGTGCCAATGCCA-TT
65 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
*
50145 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAC
130 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* ***** *
50210 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTAGGGGGCCAATATAAGGGCCAAGT
195 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CGGGATTTTTTTAA-----AA-T
***** ** * * * * * * * *
50275 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACCCCCCCAA-TCGCTAAAACCCTAATC
253 TTTTTCA---AAAGGA-GT--T-T-TG-----GCCCCA-------AACTTGGT-AGA-CGTGAT-
* * * * ** * * *
50339 CCGATGGTTAGGTTCTCCGATGATGGTACCTCGGGCAAAAAAAAAATACGGC-ACCAGTACATGC
295 CC--TTG-TA--TT-T---TTGTTGG--CAT-GCAC-AA--AAAAATTCAGCTA--A--A-A-AC
* *
50403 CCGAGCCCAGCATGTGCACCCGTAAACCTCGGTCCGATCTGATCTTGCATGCCCGAGCATTTGAA
339 TCGA----AG--TGT--A--C---AA---------GA--T--T-TTG--T----GACCATTTGAA
* * *
50468 AAAAGTGTCCCCA-TTCTAAACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATCC
371 AAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGC
* *
50532 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTT
435 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** * *
50597 CCAGCACCCACCAAACATCATGTGCGCACACCCCCCCATCCCCCCAATCATCGGAACCCCAATGC
500 CCAGCACCCATCGCACATCATGTGCCCACA-CCCCCC--CCCCCCAATCATCGAAACCCCAATGC
* * ** * *
50662 CACCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAGGTGAAAAAAAATATGGCACCA
562 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCA
* * * * ** * *
50727 CCACATGTCCGAGCCCAGCATGTACACCTGCAACCCTCGGTCCGGTCTGATCTTACACTGTGAAT
627 GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAAT
* * *
50792 GAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG-GTG
692 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
50856 CGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA-CTTGGGGATCGA-TCGGGTCCCCCTCTG
757 CGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC--AGGGATCGACTCGGGTCCCCCT-TG
* * * * * *
50919 CGTGCTACCGATCCTACTGTCGCAACCCTCAATTCGATCTGATCTTAGACTGTGAATGAACTTCG
819 CGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCG
*
50984 TATGCCTAAGC
884 TATGCCTAAAC
* * * * * *
50995 CAACCGACGAAACGTGCGAGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCACAAGTCAT
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* **
51060 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATTTCATTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
* * * *
51125 TATGGCATGTAAATCCATACAATTGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACA
131 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-
* ** * *
51190 T-GTTTTCTACTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAATATTTTTTT
195 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA-ATTTTTTC
* * * *
51253 AGAAA-GAGTTTT-GCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTATTGCCATGCATAAAA
259 A-AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
51316 AAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAATGTATCCCCATTTC
323 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
51381 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTTAAGGGGGTGTGA
388 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGA
*
51446 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
452 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
51511 TCATGTGTCCACACCCACCCGCCCCCCCAATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCC
517 TCATGTGCCCACA-CC-CCC-CCCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** *
51576 GGCGATGCTCCGACGATGGTGCCCCAGGCGAAAAAAAATGCT-GCAGTAGCACATGCCCAAGCCC
579 GACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATG-TGGCACCAGCACATGCCCGAGCCC
* *
51640 AGCATGTGCACCCGCAACCCTCAGTTTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTA
643 AGCATGTGCACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * *
51705 GACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCATCTGGC
708 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGC
* * * * *
51770 CAGAGGGGCA-GATGCACAAGCCGGGGATTGACT-GGGTCCCCCCTTACGTGCTGTCGATCCCAC
773 CAGAGGGGCAGGATGCACAAG-CAGGGATCGACTCGGGT-CCCCCTTGCGTGCTGCCGATCCTAC
* * * *
51833 TACTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAAC
836 TGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
* * *
51892 CAACCGACGAAACGA----GCGGGTGGGCACTATGCCGACCAGAGAGGCGGGATGCAG-AAGCCG
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-GCAAGCCG
* * *
51952 TGGATCGATAAGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACCATCCCAATGCCATTT
65 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
*
52017 TTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
130 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
52082 TCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCA
195 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
* *
52147 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTATTGGCATGCACAAAAAC
260 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
52211 ATTCAGCTAAACAGTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAG
325 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
52276 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-TCCAATGCTCTTTAA-GGGGTGTGAGTT
390 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
52339 CTTGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
455 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * * * *** *
52404 TGTG--CA-ACAGCCCCCCCCCAATCGTCGGAACCCCCAATG-C-CC-AT-TGG-TCTTTAATGA
520 TGTGCCCACACCCCCCCCCCCCAATCATC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * **
52461 TGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATATGGCACCAGCACGTGCCTAAGCCCAGCATG
584 TGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
52526 TGCACCTGCAACCCTC-----GGTCC-A----GC-CT--G-AT---CT---TA--C----ACTAG
649 TGCACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
52565 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AGGCACTCAGCCGGACAGAG
714 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCAGCCGGCCAGAG
* * * * * *
52629 GTGCAGGATGCGCAAGCCAGGGATC-AGTCGGGTCCCCCCTGTGTGCTGCCGATCCTACTGTCGC
778 GGGCAGGATGCACAAG-CAGGGATCGACTCGGGTCCCCCTTGCGTGCTGCCGATCCTACTGCCGC
* * * * *
52693 AACCTTCAGTCTGGTCTGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
842 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
* ** * * * * *
52746 CAACTGATTAAACCAGCGGGTGGGCGGGCACTACGTCGGCCAGAAAGGCGGGATGCGCAAGTCGT
1 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* *
52811 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAAAGCCTTTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
* *
52876 TATGACTTGTAAAATCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
131 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
52941 CGTTTTCCATTTTTCATGATTTTTCAAACTTTTTACGGATT-GGGATTTTGTTAAAATTTTTTCA
196 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTTAAAATTTTTTCA
* * * * *
53005 GATGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCCTGCTCAAAAAA
260 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* ** *
53070 ATTCAGCTAAAAACTCGAAGCGTGTAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
325 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
53135 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
390 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
53200 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
455 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
53263 TATCGTAACG
Statistics
Matches: 4326, Mismatches: 539, Indels: 354
0.83 0.10 0.07
Matches are distributed among these distances:
853 1 0.00
854 151 0.03
855 20 0.00
857 1 0.00
858 255 0.06
859 113 0.03
860 16 0.00
861 72 0.02
863 2 0.00
866 2 0.00
867 1 0.00
869 2 0.00
870 1 0.00
871 400 0.09
872 70 0.02
874 9 0.00
875 4 0.00
879 1 0.00
880 110 0.03
881 2 0.00
882 2 0.00
883 3 0.00
884 15 0.00
885 12 0.00
886 1 0.00
887 1 0.00
888 2 0.00
890 124 0.03
891 27 0.01
892 14 0.00
893 331 0.08
894 220 0.05
895 725 0.17
896 352 0.08
897 389 0.09
898 38 0.01
899 2 0.00
900 3 0.00
902 4 0.00
903 1 0.00
905 4 0.00
906 1 0.00
907 2 0.00
908 1 0.00
909 1 0.00
910 2 0.00
915 5 0.00
916 1 0.00
919 1 0.00
921 4 0.00
922 4 0.00
923 7 0.00
924 2 0.00
925 2 0.00
926 2 0.00
927 2 0.00
929 6 0.00
930 2 0.00
931 1 0.00
933 5 0.00
934 8 0.00
935 3 0.00
936 4 0.00
937 3 0.00
938 3 0.00
939 8 0.00
940 4 0.00
942 1 0.00
943 2 0.00
944 6 0.00
946 2 0.00
947 2 0.00
948 2 0.00
949 2 0.00
950 7 0.00
951 3 0.00
952 4 0.00
954 1 0.00
957 2 0.00
958 5 0.00
964 1 0.00
965 1 0.00
966 3 0.00
968 2 0.00
969 1 0.00
970 2 0.00
971 3 0.00
972 3 0.00
973 2 0.00
976 4 0.00
977 162 0.04
978 218 0.05
979 297 0.07
980 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (894 bp):
CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCCCACACCCCCCCCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
CACCCGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGG
CAGGATGCACAAGCAGGGATCGACTCGGGTCCCCCTTGCGTGCTGCCGATCCTACTGCCGCAACC
CTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAC
Found at i:49835 original size:26 final size:26
Alignment explanation
Indices: 49799--49851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
49789 TGGGTCCAAT
49799 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
49825 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
49851 C
1 C
49852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:50807 original size:26 final size:26
Alignment explanation
Indices: 50778--50830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
50768 CCGGTCTGAT
*
50778 CTTACACTGTGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
*
50804 CTTAGACTGCGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
50830 C
1 C
50831 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCGTATG
Found at i:51713 original size:26 final size:26
Alignment explanation
Indices: 51675--51727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
51665 TTGGTCTGAT
*
51675 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
51701 CTTAGACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
51727 C
1 C
51728 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:53380 original size:26 final size:27
Alignment explanation
Indices: 53336--53386 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
53326 GTGCCCCGAT
53336 TGGGAATGAACTCCATATG-CTAAGAC
1 TGGGAATGAACTCCATATGCCTAAGAC
**
53362 TGGGAATGAACTCTGTATGCCTAAG
1 TGGGAATGAACTCCATATGCCTAAG
53387 TTAACCCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (27 bp):
TGGGAATGAACTCCATATGCCTAAGAC
Found at i:54253 original size:26 final size:26
Alignment explanation
Indices: 54224--54276 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
54214 CCGGTCTGAT
54224 CTTACACAGGGAATGAACTCCGTATG
1 CTTACACAGGGAATGAACTCCGTATG
* * *
54250 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACAGGGAATGAACTCCGTATG
54276 C
1 C
54277 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACAGGGAATGAACTCCGTATG
Found at i:55528 original size:579 final size:580
Alignment explanation
Indices: 54405--55547 Score: 1886
Period size: 580 Copynumber: 2.0 Consensus size: 580
54395 AGTCTGGTCT
* * * *
54405 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAACGGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCAACGAAACGAACGGACGGACGGGC
*
54470 ACTACGCCAGCCAGAGAGGCGGGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGCCAGCCAGAGAGGCGGGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGG
* * *
54535 CACATCTTCATATTTTTGCCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCTACCGTACCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCC
*
54600 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCACGATTTTTGAAACT
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCACAATTTTTGAAACT
* *
54665 TTTTACGGTTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTCGGCGCCAAACTTGGTAGACG
261 TTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACG
*
54730 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGAAT
326 TAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGAAT
*
54795 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACTACTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACTACTACTGGCAGCAAACCTG
* * *
54860 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCACAAATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
54925 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCGGTCCAGTCC
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCGGTCCAGTCC
*
54985 GATCTTAGACTGGGAATGAAC-CTCGTATGCCTAACCCAACCAACGAAAC-AAGCAGG-TGGACG
1 GATCTTAGACTGGGAATGAACTC-CGTATGCCTAACCCAACCAACGAAACGAA-C-GGACGGACG
* * * * *
55047 GGCACTACGTCGGCCAGAGAGGTGGGATG-TGAAGGCCATGGATTGATAGGGTGGTAGGTAGGTT
63 GGCACTACGCCAGCCAGAGAGGCGGGATGCGGAA-GCCATGGATCGATAGGGTGGTAGGTAGGTT
* *
55111 TATGCACATCTTCATATTTCTACCGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATAAAATGG
127 TAGGCACATCTTCATATTTCTACCGTACCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGG
**
55175 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACAATTTTTG
192 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCACAATTTTTG
* * *
55240 AAACTTTTTACGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
256 AAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGT
55305 AGACGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG-AAGTGTAC
321 AGACGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAAGTGTAC
* * *
55369 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTATTGGCAGCA
386 AGAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACT-ACTACTGGCAGCA
*
55433 AACCTGTAAAATCACAAATGCACTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
450 AACCTGTAAAATCACAAATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
55498 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
55548 CCCCCGCCCC
Statistics
Matches: 524, Mismatches: 33, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
578 1 0.00
579 257 0.49
580 264 0.50
581 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (580 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCAACGAAACGAACGGACGGACGGGC
ACTACGCCAGCCAGAGAGGCGGGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGG
CACATCTTCATATTTCTACCGTACCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCACAATTTTTGAAACT
TTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACG
TAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGAAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACTACTACTGGCAGCAAACCTG
TAAAATCACAAATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCGGTCCAGTCC
Found at i:55724 original size:26 final size:26
Alignment explanation
Indices: 55695--55747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
55685 CTAGTCCGAT
*
55695 CTTACACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
55721 CTTAAATTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
55747 C
1 C
55748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:56598 original size:26 final size:26
Alignment explanation
Indices: 56569--56621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
56559 CCGGTCCGAT
56569 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
56595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
56621 C
1 C
56622 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:56748 original size:881 final size:870
Alignment explanation
Indices: 54985--57293 Score: 3353
Period size: 881 Copynumber: 2.6 Consensus size: 870
54975 GGTCCAGTCC
* * * * *
54985 GATCTTAGACTGGGAATGAAC-CTCGTATGCCTAACCCAACCAACGAAACAAGCAGG-TGGACGG
1 GATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGG
* * * * * *
55048 GCACTACGTCGGCCAGAGAGGTGGGATGTGA-AGGCCATGGATTGATAGGGTGGTAGGTAGGTTT
64 GCACTACG-CGGCCAGAGAGGCGGGATG-CACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
55112 ATGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTATGGCTTGTAAATTCATAAAATGGTC
127 AGGCCCATCTTCATATTTCTGCCGTGCCAATGCCTTTTTATGGCTTGTAAATTCATACAATGGTC
* *
55177 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACAATTTTTGAA
192 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
55242 ACTTTTTACGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
257 ACTTTTTACGTTTAG-GATTTTTTTTAAATTTTTTCAGAAGGA-TTTTTGCCCCAAACTTGGTAG
* *
55307 ACGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
320 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
55372 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
385 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
55437 TGTAAAATCACAAATGCACTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
* *
55502 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCGCCCCACAAATCGT
515 AATATAAGGG-CAAGTACCAGCACCCATCACACATCATGTGCGCACCCCCCGCCCCACAAATCGC
**
55567 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAAAA
579 CGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGA----CC-G-GATGGCACCCCGACGAAAAA
* *
55632 AATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTAGTCCGATCT
637 AA-GTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCT
*
55697 TACACTGGGAATGAACTCCGTATGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
701 TACACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
55762 GAAACGAGTGTGGGCGCTCACGGCCAGAGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCT
766 GAAACGAGTGCGGGCGCTCACGGCCAGAGGGCAGGATGCACAAGCCGGGATCGCCGGGTCCCCCT
** * *
55827 CTGTGTGCTACCGATCCTACTGCAACCCTCGGTCTGGTCT
831 CTGCATGCTACCGATCCTACCGCAACCCTCGATCTGGTCT
* *
55867 GATTTTAGACTGGGAAT-AACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGC
* *
55931 ACTACGCCGGCCAGAGAGGCGGCATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGG
66 ACTACG-CGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
55996 CCCATCTTCATATTTCTGCTGTGCCAATGCCTTTTTTATGGCTTGTAAATTAATACAATGGTCCC
130 CCCATCTTCATATTTCTGCCGTGCCAATGCC-TTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
56061 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAAC
194 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * **
56126 TTTTTACGATTTTGGATTTTTTTTAAATTTTTTCAAAAGGATTTTCTG-CCCAAAATTTTTAGAC
259 TTTTTACG-TTTAGGATTTTTTTTAAATTTTTTCAGAAGGATTTT-TGCCCCAAACTTGGTAGAC
* * *
56190 GTGATCCTTGTATTTTTATTGGCATGCACTAAAAAATTCAGCAAAAAACTCGAAGTGTACAGGAT
322 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
** * *
56255 TTTGTGACCATTTGAAAAATCTGTCCCCA-TTCTAGACACTTTAATCGCTACTGGCAGCAAACCC
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCT
* *
56319 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAAGGGGCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
*
56384 ATATAAGGGTCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGCCCCCCCAAAT
516 ATATAAGGG-CAAGTACCAGCACCCATCACACATCATGTGCG--CACCCCC-CG-CCCCACAAAT
* **
56449 CGCCGGAACCTCCAATGCCGTCGGTTAGGTTCT-C-CGA-C-GATGGCACCCCGGGTGAAAAAAA
576 CGCCGGAACC-CCAATGCCGTCGGTCAGGTTCTCCGCGACCGGATGGCACCCC-GACGAAAAAAA
* *
56510 -TGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAAGCCTCGGTCCGGTCCGATCTTAC
639 GTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTTAC
* *
56574 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAA
704 ACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
56639 ACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCC
769 ACGA--GTGCGGGCGCTCA--CGGCCAGAGGGCAGGATGCACAAGCC-GGGATCG-CCGGGTCCC
* *
56704 CCTCTGCATGCTACTGATCTTGCTGCCGCAACCCTC-AT-TGGTCT
828 CCTCTGCATGCTACCGATC---CTACCGCAACCCTCGATCTGGTCT
*
56748 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGC
*
56813 ACTA--C-GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-
66 ACTACGCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
56874 CAATC-TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CCATCTTCATATTTCTGCCGTGCCAATGCC-TTTTTATGGCTTGTAAATTCATACAATGGTCCCT
56938 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
195 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
57003 TTTTACGGTTCAGGATTTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
260 TTTTAC-GTTTAGGATTTTTTTT-AAATTTTTTCAGAAGGATTTTT-GCCCCAAACTTGGTAGAC
57068 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
322 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* *
57133 TTTGTGACCATTTAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
57197 TAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT-AGGGAGCCA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG-GCCA
57261 ATATAAGGGCAAGTACCAGCACCCATCACACAT
516 ATATAAGGGCAAGTACCAGCACCCATCACACAT
57294 TGTCGTAACG
Statistics
Matches: 1290, Mismatches: 108, Indels: 64
0.88 0.07 0.04
Matches are distributed among these distances:
874 126 0.10
875 9 0.01
876 186 0.14
877 123 0.10
878 178 0.14
879 8 0.01
880 30 0.02
881 370 0.29
882 193 0.15
883 25 0.02
884 2 0.00
885 19 0.01
886 21 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (870 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGC
ACTACGCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
CCATCTTCATATTTCTGCCGTGCCAATGCCTTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGTTTAGGATTTTTTTTAAATTTTTTCAGAAGGATTTTTGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATA
AGGGCAAGTACCAGCACCCATCACACATCATGTGCGCACCCCCCGCCCCACAAATCGCCGGAACC
CCAATGCCGTCGGTCAGGTTCTCCGCGACCGGATGGCACCCCGACGAAAAAAAGTGGCACCAGCA
CATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAA
CTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCGGGC
GCTCACGGCCAGAGGGCAGGATGCACAAGCCGGGATCGCCGGGTCCCCCTCTGCATGCTACCGAT
CCTACCGCAACCCTCGATCTGGTCT
Found at i:58276 original size:17 final size:17
Alignment explanation
Indices: 58254--58293 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
58244 GATTTTAAGA
58254 GGTTTT-GAATTTTAGG
1 GGTTTTGGAATTTTAGG
*
58270 GGATTTTGGATTTTTAGG
1 GG-TTTTGGAATTTTAGG
58288 GGTTTT
1 GGTTTT
58294 AAAAACTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 8 0.38
18 11 0.52
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.53
Consensus pattern (17 bp):
GGTTTTGGAATTTTAGG
Found at i:59682 original size:15 final size:14
Alignment explanation
Indices: 59642--59684 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
59632 TTTTTTTAGC
*
59642 TATTTTTTTATA-T
1 TATTTTTTTGTATT
*
59655 TATTTTTTGGTATT
1 TATTTTTTTGTATT
59669 TATTTTTTTTGTATT
1 TA-TTTTTTTGTATT
59684 T
1 T
59685 CGTATAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 10 0.40
14 3 0.12
15 12 0.48
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:59987 original size:87 final size:88
Alignment explanation
Indices: 59880--60092 Score: 295
Period size: 87 Copynumber: 2.4 Consensus size: 88
59870 AATCAATCGA
* * * *
59880 GATAACACACGCGAATCGAAATTATGCCCGGAGGTCTTACAAAATAGATTGGGATAACATCG-CA
1 GATAACA-TCGCGAATCGAAATTATGCTCGGAGGTCTTACAAAATAGACTGGGATAACATCGTAA
59944 GTCAAAAGATAAAGAATCGATCAG
65 GTCAAAAGATAAAGAATCGATCAG
* *
59968 GATAACATCGCGAATCGAAATTATG-TCGAAGGTCTTACAAAATCGACTGGGATAACATCGTAAG
1 GATAACATCGCGAATCGAAATTATGCTCGGAGGTCTTACAAAATAGACTGGGATAACATCGTAAG
* *
60032 TCAAAAGATAAGGAATCGATCGG
66 TCAAAAGATAAAGAATCGATCAG
* * **
60055 GATAACATCACGAATCAAAATTACACTCGGAGGTCTTA
1 GATAACATCGCGAATCGAAATTATGCTCGGAGGTCTTA
60093 AGAATCATAC
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
86 31 0.28
87 61 0.55
88 18 0.16
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (88 bp):
GATAACATCGCGAATCGAAATTATGCTCGGAGGTCTTACAAAATAGACTGGGATAACATCGTAAG
TCAAAAGATAAAGAATCGATCAG
Found at i:60111 original size:22 final size:23
Alignment explanation
Indices: 60082--60144 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
60072 AAATTACACT
60082 CGGAGGTCTTA-AGAATCATACC
1 CGGAGGTCTTACAGAATCATACC
* * *
60104 TGGAGGTCTTATAGAATCATGCC
1 CGGAGGTCTTACAGAATCATACC
60127 CGGAGGTCTTACAGAATC
1 CGGAGGTCTTACAGAATC
60145 GACTGGAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 10 0.28
23 26 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (23 bp):
CGGAGGTCTTACAGAATCATACC
Found at i:60244 original size:133 final size:132
Alignment explanation
Indices: 59997--60357 Score: 465
Period size: 133 Copynumber: 2.7 Consensus size: 132
59987 ATTATGTCGA
*
59997 AGGTCTTACAAAATCGACTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
* ** * *
60062 TCACGAATCAAAATTACACTCGGAGGTCTTAAGAATCATACCTGGAGGTCTTATAGAATCATGCC
65 TCGCGAATCAAAATTATGCCCGGAGGTCTTAAGAATCATACCTGGAGGTCTTACAGAATCATGCC
*
60127 CGG
130 CAG
*
60130 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTGG-ATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
* * * * * *
60195 TTGCGAATCAAAATTATGCCCGGTGGTCTT-AGAAATCGTGCTTGTAGGTCTTACAGAATCATGC
65 TCGCGAATCAAAATTATGCCCGGAGGTCTTAAG-AATCATACCTGGAGGTCTTACAGAATCATGC
60259 CCAG
129 CCAG
* * * * *
60263 AGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAAAA-ATAAAGAATCGATCGGGACAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
* * **
60327 CCGCAAATCAAAATTATGCCTAGAGGTCTTA
65 TCGCGAATCAAAATTATGCCCGGAGGTCTTA
60358 CAAATCTCAA
Statistics
Matches: 198, Mismatches: 26, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
132 49 0.25
133 147 0.74
134 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (132 bp):
AGGTCTTACAGAATCGACTGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACAT
CGCGAATCAAAATTATGCCCGGAGGTCTTAAGAATCATACCTGGAGGTCTTACAGAATCATGCCC
AG
Found at i:61148 original size:33 final size:32
Alignment explanation
Indices: 61069--61346 Score: 264
Period size: 33 Copynumber: 8.5 Consensus size: 32
61059 TTGAGGCTAA
*
61069 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCCA-
1 ATAAACTGGGCTTAAATCTTCATTGAA-GCCAG
61099 ACTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 A-TAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * * * *
61133 ATAAACTAGGTTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* *
61166 ATGAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
61199 ATAAACTGGGCTTAAAGT-TTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGA-AGCCAG
* *
61232 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAA
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
* * *
61265 ATAAACTAGGCTTAAAT-ATCATTGACGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
61297 ATAAACTGGGCTTAAATCTTCATTTGAGGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
*
61330 ATAAACTGGACTTAAAT
1 ATAAACTGGGCTTAAAT
61347 TTTATTTTAT
Statistics
Matches: 206, Mismatches: 24, Indels: 33
0.78 0.09 0.13
Matches are distributed among these distances:
30 1 0.00
31 16 0.08
32 33 0.16
33 144 0.70
34 11 0.05
35 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGCCAG
Found at i:61221 original size:99 final size:98
Alignment explanation
Indices: 61067--61345 Score: 329
Period size: 99 Copynumber: 2.8 Consensus size: 98
61057 TTTTGAGGCT
* *
61067 AAATAAACTTGGCTTAAAT-TTATTGAA-GGCCA-ACTAAACTGGGCTTAAATCTTCATTTGAAG
1 AAATAAACTAGGCTTAAATATCATT-AACGGCCAGA-TAAACTGGGCTTAAATCTTCATTTGAAG
* *
61129 CCAGATAAACTAGGTTTAAAACCTCATTGATGGCC
64 CCAGATAAACTAGGCTTAAAACCTCATTAATGGCC
* * * *
61164 AGATGAACTGGGCTTAAAGCT-TCATTAATGGCCAGATAAACTGGGCTTAAAGT-TTCA-TTGAG
1 AAATAAACTAGGCTTAAA--TATCATTAACGGCCAGATAAACTGGGCTTAAA-TCTTCATTTGA-
* * *
61226 AGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
62 AGCCAGATAAACTAGGCTTAAAACCTCATTAATGGCC
* *
61263 AAATAAACTAGGCTTAAATATCATTGACGGCCAGATAAACTGGGCTTAAATCTTCATTTGAGGCC
1 AAATAAACTAGGCTTAAATATCATTAACGGCCAGATAAACTGGGCTTAAATCTTCATTTGAAGCC
61328 AGATAAACT-GGACTTAAA
66 AGATAAACTAGG-CTTAAA
61346 TTTTATTTTA
Statistics
Matches: 157, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
97 19 0.12
98 56 0.36
99 80 0.51
100 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (98 bp):
AAATAAACTAGGCTTAAATATCATTAACGGCCAGATAAACTGGGCTTAAATCTTCATTTGAAGCC
AGATAAACTAGGCTTAAAACCTCATTAATGGCC
Found at i:62607 original size:29 final size:29
Alignment explanation
Indices: 62565--62622 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
62555 TTGCTAAAAT
62565 TTTTTAGTGCATGATGTCATAACCAATGC
1 TTTTTAGTGCATGATGTCATAACCAATGC
62594 TTTTTAGTGCATGATGTCATAACCAATGC
1 TTTTTAGTGCATGATGTCATAACCAATGC
62623 GCAAGCCGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (29 bp):
TTTTTAGTGCATGATGTCATAACCAATGC
Found at i:64163 original size:26 final size:26
Alignment explanation
Indices: 64127--64179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
64117 TCGGTCCGAT
64127 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
64153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
64179 C
1 C
64180 CAAGTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:71466 original size:26 final size:26
Alignment explanation
Indices: 71430--71482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
71420 CCGGTCCGAT
71430 CTTACACTGGGAATCAACTCCATATG
1 CTTACACTGGGAATCAACTCCATATG
* *
71456 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATCAACTCCATATG
71482 C
1 C
71483 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCATATG
Done.