Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168165.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28497
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Found at i:1061 original size:26 final size:26
Alignment explanation
Indices: 1021--1073 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1011 GTTGACTTAG
* *
1021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
*
1047 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
1073 G
1 G
1074 ATCAGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:2139 original size:26 final size:26
Alignment explanation
Indices: 2110--2162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2100 GTTGACTTAG
2110 GCATACGGAGTTC-ATTCCTAGTCTAA
1 GCATACGGAGTTCGATTCC-AGTCTAA
*
2136 GCATACGGAGTTCGTTTCCAGTCTAA
1 GCATACGGAGTTCGATTCCAGTCTAA
2162 G
1 G
2163 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCGATTCCAGTCTAA
Found at i:3599 original size:898 final size:892
Alignment explanation
Indices: 1764--4612 Score: 3756
Period size: 898 Copynumber: 3.2 Consensus size: 892
1754 AAGTTCTCTG
*
1764 CATGAAACTTCACGTGAAGGGCTTAAGGGTCCATTGTATGAA-TTACAAG-CAT--AAATGGCAT
1 CATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1825 TGGCA-CTAGAAATATGAAG--CTGCCTAAACCCACCTA-CACCCTATCGCTCCACGG-TTG-TA
65 TGGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGACA
* * * * * *
1884 TCTCTGTCTCTCTGG-TGACGTAGTGCCGC-CCGCTACCCG-CCGCATCGTTTCGTCGGTTGGCT
130 TC-CCGTCTCTCTGGCCGGCGTAGAGCC-CACC-C-GCCCGTCCGCATCGTTTCGTCGATTGGCT
* * ** *
1946 TAGGCAATACGGAGTTAATTTGCACAGT-TAAGATCAGACTAGATCGAGGGTTACGACAGCAGGA
191 TAGGC-ATACGGAGTTCA-TT-CCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGA
* *
2010 TCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCTGCTTGGGCATCCCGCCCCTATGGCC-AGC
253 TCGGTAGCACGCAGAGGGGGACCC-ATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGA-C
* * *
2074 TGCGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
316 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
* * ** * * *
2139 TACGGAGTTCGTTTCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATGCTTGTCTC
381 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * *
2204 GAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
446 GAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC--CGGAGCATC-GC-GAGAACC
* * * * * *
2269 TGACCGGCTGCATTGGGGTTTCGACGATCGGGGGGGCC--AGGGGTTTGCGCACATGATGTGCGA
507 TGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGA
*
2332 TGGGTGCTGGTACTTGGCCCTTAC-ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
571 TGGGTGCTGGTACTTGGCCCTT-CTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
2396 CCCCTTAAAGAGCATATGAGATTTTACAGGTTTACTGCCAGTAGTCATTAAAGTGTCTGAAATGA
635 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
2461 GGACACTTTTTTCAAATGATCACAAAATCTTGTACGCTTTGAGTTTTTAGTTG-ATTGTTTTTGT
700 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATT-TTTTTAT
* * *
2525 GCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAA
764 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAA
* *
2590 TTTTAAAAAATCCCGGA-TCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
829 TTTTAAAAAAT-CCAGACT-GTAAAAAGTTTCAAAAATTATGAAAAATAGAAAAC-AGTCGTCTT
2654 GC
891 GC
*
2656 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
2721 GGCATCCAGAAATATGAAGATGTGCCTCAACCCACCTACCATCCTATCGATCCACGGCTTGCACA
66 GGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-ACA
*
2786 TCCCGTCTCTCTGGCCGGCGTAAAGCCCACCCGCCCGTCCGC-TCGTTTCGTCGATTGGCTTAGG
130 TCCCGTCTCTCTGGCCGGCGTAGAGCCCACCCGCCCGTCCGCATCGTTTCGTCGATTGGCTTAGG
* ** * * * *
2850 CATACGGAGTTCATTCCCAATCTAAGATTGGACCGGATCGATGGTTGCGGTAGTAGGATCGGTAG
195 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGTAG
* *
2915 CACGCAGAGGGGGACCCGATCGATCCCCTTCTTGCGCATCCC-TCCCTCTGGCCGACTGAGCGCC
260 CACGCAGAGGGGGACCC-ATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * * *
2979 CGCACGCTCGTTTTGTTGGTTGACTTAGGCTTGCGGAGTTCATTCCCAGTCTAAGCATACGGAGT
324 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGT
* * *
3044 TCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGT
389 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGT
3109 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGAC
454 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--CCGGAGCATCG-C-GAGAACCTGACCGAC
* * *
3174 GGCATTGGGGTTTCGGTGATCGGAAGGGCCGGGGGGGTGTGCGAAAATGATGTGCGATGGGTGCT
515 GGCATTGGGGTTTCGGCGATCGG-GGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCT
*
3239 GGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAA
579 GGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
3304 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTT
644 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
3369 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TACCTGCCAAA
709 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAA
* *
3433 AAAAATAAAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAA
774 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * *
3498 TCCTAAACTTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGACTTGC
839 TCC-AGACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAAC-AGTCGTCTTGC
* * * *
3554 CAGGAAACTTCACGTGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAGAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
3619 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTTTG-C
66 GGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC--TTGAC
* * * * * * *
3683 ATCCCGTCTCTTTGGCCAGCGTAGTGCCCGCCCGCCCATCCGCCCGTTCATTTCGTCGATTGGCT
129 ATCCCGTCTCTCTGGCCGGCGTAGAGCCCACCCGCCCGTCCG--C-ATCGTTTCGTCGATTGGCT
* * * * *
3748 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGCCCGGACCGAGGGTTATGGCAGCAGGATCG
191 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCG
** **** * *
3813 ACAGCACGCAGAAACAGACCCATCCGAT-CCCTGGCTTGTGTATCCCGCCCCTCTGGCCGACTGA
256 GTAGCACGCAGAGGGGGACCCAT-CGATCCCCT-GCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* ** * * * *
3877 GTGCCTACACTCTCGTTTCGTGGGTTGACTTAGGCACACGAAGTTCATTCCAAGTCTAACCATAC
319 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATAC
* * * *
3942 GGAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCAGCAGCACATGCTGGGCTC-AG
384 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-
* * *
4006 GCATGTGCTGGTGCCCCATTTTTCTTCGTCGGTGCACCAT-C---G--TTG-GAGAACCTGACCG
448 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGAGAACCTGACCG
* *
4064 ACGGCATTGCGG-TTCTGGCGATCAGGGGGGTCGGGGGGGATGTGC-ACACATGATGTGCGATGG
513 ACGGCATTGGGGTTTC-GGCGATC-GGGGGGCCGGGGGGG-TGTGCGA-ACATGATGTGCGATGG
*
4127 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
574 GTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
4192 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGAC
639 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
4257 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGTATG
704 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATG
* *
4322 GCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTA
769 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTA
*
4387 AAAAATCCAGACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAGGTCGTCTTGC
834 AAAAATCCAGACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACA-GTCGTCTTGC
*
4447 CATG-AACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
4511 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGAGCA
66 GGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGA-CA
* *
4576 TCCCGTCTCTCTAGCCGGTGTAGTA-CCCACCCGCCCG
130 TCCCGTCTCTCTGGCCGGCGTAG-AGCCCACCCGCCCG
4613 CCCACCCGCT
Statistics
Matches: 1725, Mismatches: 187, Indels: 90
0.86 0.09 0.04
Matches are distributed among these distances:
890 2 0.00
891 24 0.01
892 211 0.12
893 255 0.15
894 72 0.04
895 16 0.01
896 15 0.01
897 216 0.13
898 356 0.21
899 223 0.13
900 37 0.02
901 23 0.01
902 113 0.07
903 162 0.09
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGACAT
CCCGTCTCTCTGGCCGGCGTAGAGCCCACCCGCCCGTCCGCATCGTTTCGTCGATTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGTAGC
ACGCAGAGGGGGACCCATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGC
TGGTGCCACATTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGAGAACCTGACCGACGGCATT
GGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCAGAC
TGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAGTCGTCTTGC
Found at i:6290 original size:26 final size:26
Alignment explanation
Indices: 6261--6313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6251 GTTGACTTAG
*
6261 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6313 G
1 G
6314 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:7823 original size:26 final size:26
Alignment explanation
Indices: 7794--7846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7784 GTTGACTTAG
7794 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
7820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
7846 G
1 G
7847 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:9162 original size:870 final size:873
Alignment explanation
Indices: 6993--13046 Score: 7045
Period size: 899 Copynumber: 6.8 Consensus size: 873
6983 TTCTTCACCG
* * * * *
6993 GGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAACATCCGAGCATC-GTCGGAGAAC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACT-GGAGAAC
* ** *
7057 CTGACCGACAGCATTGGGGTTCCGACGATC------G--GGGGGGTGTGCGCGTATGATGTGTGA
65 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * * * *
7114 AGGGTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAGACCTCGTGAACTTACACC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
7179 CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
195 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
7244 GACACTTTTTTCAAATGGAT-ACAAAATCTTGTACACTTCGACTTTTTA-CTTGAATTTTTTTTT
260 GACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAA-TTTTTTTA
* *
7307 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
322 TGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
7372 ATTTTAAAAAATCCCGAACCAG-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCATCT
387 ATTTTAAAAAATCTCGAA-CAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
7436 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
451 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
7501 ATTGGCACACAGAAATATGAAGACATCCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
516 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
7566 GCATCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCACCCGCCGTCCGCTCGTTTCGTTGGTTGGC
581 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG-C--CCGCTCGTTTCGTCGGTTGGC
* * * * * * *
7631 TTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGTGGCAGCAGGATC
639 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATT
* * ** *
7696 GGCAGCACGCAGAGGGGAACCAAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
704 GACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
7761 GCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATAC
769 GCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA-
* * * * *
7826 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATACTGGGCTT
827 --AG-T-A-T-CC-G----AGATC-TA---GACCGATGGTTGCGGCAGCACATGCTGGGCTC
* ** *
7888 GGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-GTCGGAGAAC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACT-GGAGAAC
* * * * * *
7952 CTAACCGGCGGTAATGGGGTTCCGGCGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGCGA
65 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
8017 TGGGTGCTGG-A----------A-CTTGGCCCCCTACCCCTCATCAAACAAT-GAGAACTCATAC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACAC
8069 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
194 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
8134 GGACACTTTTTTCAAATGGTCATAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTGTTTTATG
259 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* ** *
8199 CATGCCAACAAAAATACAAGAATTACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAAA
324 CATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
8264 TTAAAAAAAACAT-GAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTG
389 TTTAAAAAATC-TCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
8328 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
453 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
8393 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
518 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
8458 ATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTCAAGCGTA
583 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * **
8523 CGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTACGACAGCAGGATCGGTAGCACG
648 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGACAGCACG
* *** *
8588 CAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTCATCGGCTGAGCGCCTGCA
713 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
8653 CGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-GATC-AG
778 CGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATCCGAGATCTAG
* *
8714 ACCGATGGTTGTGGCAGCGCATGCTGGGCTC
843 ACCGATGGTTGCGGCAGCACATGCTGGGCTC
* *
8745 GGGCATGTGCTGGTCCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCACTGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGGAGAACC
* *
8810 TGACCGACGGCATTGGGGTTCCGCCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
66 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* * * * * *
8875 TGGGTGTTGGTACTTGGCCCTTATGTTAGCCCCCTATCCCTCATCAAACCTTGGGTACTCACACC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
8940 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGG
195 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
9005 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTTTGC
260 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * *
9070 ATGCCAACAAAAATACAAGCATCACGTCTACCAAGCTTGGGGCCAAAACCCCTTCCGAAAAAATT
325 ATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
9135 TTAAAAAATCTCGAACAGCATAAAGTTTCGAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCC
390 TTAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
9200 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCTTTG
455 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
9265 GCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATGGATCCACGGCTTGCGCAT
520 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
9330 CCCGTCTCTCTGGCCGGCATAGTGCCCACTCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
585 CCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
9395 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATTGACAGCA
646 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGACAGCA
** * ** ** *
9460 CATAGAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCCGCCTTTCTGGCCGACTGAGCGCCCG
711 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * *
9525 CACGCTCGTTTCATTGTTTGACTTACGAATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTC
776 CACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG-T-
*
9590 ATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
830 A-T-CC-G----AGAT----CTAGACCGATGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
9645 GGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGTACCATCGTCAGAGTATCGCAGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGGAGAACC
* *
9710 TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
66 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
9775 GGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
131 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
9840 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGG
196 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
9905 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
261 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* ** * *
9970 TGCCAACAAAAATATAAGAATCACGTCTAAGAAGTTGGGGGCCAAAACTCCCTCCGAAAAAATTT
326 TGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * ** * *
10035 TAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATTTTTAAAAATAGAAAACGAGTCGTGTTGCCA
391 TAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
10100 TGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCGTTGG
456 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
10165 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATC
521 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
10230 CCGTCTCTCTGGTCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
586 CCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
10295 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGTAGGATTGACAGCAC
647 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGACAGCAC
** * * *
10360 ATAGTGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCCCGC
712 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
10425 ACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
777 ACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG-T-A
* * ** **
10490 TTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCACATATTGGGCTC
831 -TCC-G----AGATC-TA---GACCGATGGTTGCGGCAGCACATGCTGGGCTC
* **
10543 AGGCATGTGCTGGTGCC-TCATTTTTCTTCG-CTGGGGCACCATCACCGGAGCATCA-TCGGAGA
1 GGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACT-GGAGA
* * *** * *
10605 ACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGTTTCGGGGGGTGTGCGTACATGATGTGT
63 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
10670 GAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTCGAGAACTCACA
128 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
10734 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATG
193 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
10799 GGCACACTTTGTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTGGCTGAATTTTTTT-T
258 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * *
10863 GGCATGCCAGCAAATATACAAGAATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAAA
323 -GCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
10928 ATTTAAAAAAAATCTCGAATC-GGAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTC
387 ATTT-TAAAAAATCTCGAA-CAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
10992 TTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGG
450 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
11057 CATTGGCACACAGAAATAAAAAGATGTCCCTAAACCCACCTACC-CCCTATCGATCCACGGCTTG
515 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11121 CACATCTCGTCTCTCTGGTCGACGTAGTGCCCGCCCG---G-TCGTTTCGTCGGTTGGCTTAGGC
580 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** ** * * * * *
11182 ATACGGAGTTAATTTCCAGTCTAAGGTTGGACAAGATCAAGGGTTGTGGCAGCAGGATTGGCAGC
645 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGACAGC
* * * * *
11247 ATGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGACGGCTGAGAGCCC
710 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * * * * *
11312 GCACGCTTGTTTTATGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGAAGTT
775 GCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATCCG-AG--
* *
11377 CATTCATAGTTTAAGATTGGACCGGATCGAGGGTTACGGCAGCATATGCTGGGCTC
837 -A-TC------T---A---GACC-GAT----GGTTGCGGCAGCACATGCTGGGCTC
11433 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGCATC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T--C-GGAGCATC
* * * * *
11498 GCCGGAGAACCTGATCGACGGCAATGGGGTTCCGTCGATCGGGGGGGCCGGGGAGGGTGTGCGCA
55 ACTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCA
* * * * * *
11563 CATGATGTGCAATGGGTTCTGGTACTTGGCTCTTATATTGGCCCCCTATCCGTCAACAAACCACG
118 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
11628 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGT
183 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
11693 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGA
248 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * * *
11758 ATATTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAGAACTCCT
313 ATTTTTTTATGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
11823 TCCAAAAAAATTTTAAAAAATCCCGAATAGCAAAATGTTTC-AAAATTTGTGAAAAATAGAAAAC
378 TCCGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCGAAAA-TCGTGAAAAATAGAAAAC
* * *
11887 GAGTTGTCTTGCCATGAAACTTCACGTAAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAT
442 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
11952 AAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCC
507 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
12017 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTGTCGTCGGTTG
572 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * *
12082 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGAGTTGC-AGTAGCAGG
637 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCAGG
* * * ** * * **
12146 ATCGACAGCATGCAAAGGGGGACCTAGCCGATCCCCGGCTTGCGTATCCCGTGCCTCTGGCCGGC
701 ATTGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
12211 TGAGCGCCCGCACGCTCATTTCAT-GGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAATC
766 TGAGCGCCCGCACGCTCATTTCATAGG-TTGACTTAGGCATACGGAGTTCATTCCCAG-----TC
*
12275 ATATGGAGTTCATCCCTAGTCTAAGATC-AGACTGGAATGAGGGTTGCGGCAGCACATGCTGGGC
825 -TA---AG-T-AT-CC--G----AGATCTAGAC-CG-AT---GGTTGCGGCAGCACATGCTGGGC
12339 TC
872 TC
* * * ** *
12341 AGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGGAGAACC
* ** * *
12406 TGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGACCGGGGGGGGGTGCGCACATGATGTGCGA
66 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
*
12471 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAAC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
12536 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
195 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
12601 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTCTTATCTTAATTTTTTTATGC
260 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * * *
12666 ATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
325 ATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * * *
12731 TTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAAT-GTGAAAAAAAGAAAACAAGTCATCTTTCC
390 TTAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12795 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
455 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
12860 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCAT
520 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12925 CCCGTCTCTTTGGCCGGCATACTGCCCTCCCGCCCGCCTACCCGTTCGTTTCGTCGGTTGGCTTA
585 CCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * *
12990 GGCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGATGGTTGCGGCAGCA
642 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA
13047 CTAGTTGGGC
Statistics
Matches: 4485, Mismatches: 528, Indels: 284
0.85 0.10 0.05
Matches are distributed among these distances:
857 117 0.03
858 35 0.01
859 1 0.00
860 1 0.00
862 4 0.00
867 1 0.00
868 1 0.00
869 3 0.00
870 413 0.09
871 1 0.00
872 1 0.00
873 4 0.00
874 181 0.04
876 3 0.00
877 6 0.00
878 2 0.00
879 1 0.00
880 4 0.00
881 1 0.00
883 181 0.04
884 1 0.00
885 7 0.00
886 7 0.00
887 2 0.00
889 175 0.04
890 329 0.07
891 144 0.03
892 3 0.00
893 11 0.00
894 1 0.00
895 255 0.06
896 287 0.06
897 338 0.08
898 292 0.07
899 683 0.15
900 124 0.03
901 49 0.01
902 8 0.00
903 266 0.06
904 285 0.06
905 2 0.00
907 2 0.00
908 234 0.05
909 2 0.00
911 1 0.00
913 2 0.00
914 2 0.00
917 2 0.00
919 2 0.00
920 1 0.00
921 2 0.00
922 2 0.00
925 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGACAGCACGCAG
AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATCCGAGATCTAGACC
GATGGTTGCGGCAGCACATGCTGGGCTC
Found at i:9584 original size:26 final size:26
Alignment explanation
Indices: 9553--9603 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
9543 TGACTTACGA
*
9553 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
9579 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
9604 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:10501 original size:25 final size:26
Alignment explanation
Indices: 10450--10501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10440 GTTGACTTAG
10450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10476 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10501 G
1 G
10502 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13656 original size:714 final size:709
Alignment explanation
Indices: 12274--14437 Score: 3057
Period size: 705 Copynumber: 3.0 Consensus size: 709
12264 CCAGTCTAAT
* ** **
12274 CATATGGAGTTCA-TCCCTAGTCTAAGATCAGACTGGAATGAGGGTTGCGGCAGCACATGCTGGG
1 CATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAGCACATGCTGGG
* * ** **
12338 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
64 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCGGAGA
* ** * *
12403 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGACCGGGGGGGGGTGCGCACATGATGTG
128 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
12468 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12533 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 -ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
12598 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTCTTATCTTAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12663 TGCATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT-C-TC-GAAAAA
* * * *
12728 ATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATGTGAAAAAAAGAAAACAAGTCATCTTT
448 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATGTGAAAAATA-AAAACAAGTCATCTTG
* *
12793 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
12858 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGC
577 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGC
* * *
12923 ATCCCGTCTCTTTGGCCGGCATACTGCCCTCCCGCCCGCCTACCCGTTCGTTTCGTCGGTTGGCT
642 ATCCCGTCTCTTTGGCCGGCATAGTGCCC-CCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
12988 TAGG
706 TAGG
* * ** *
12992 CATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGATGGTTGCGGCAGCAC-TAGTTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAGCACAT-GCTGGG
* * * * *
13056 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGTACCATCGTCAGAGCATCGTAGGAGA
64 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCGGAGA
* * *
13121 ACCTGATCGGTGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTCTGCGCACATGATGTG
128 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
13185 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
13250 ACCCCATT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAAT
*
13314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
13379 TGCATGCCAACAAAAATACAAGGACCACGTCCACCATGTTTGGGACGAAAACTCACGAAAAAATT
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTCGAAAAAATT
* ** * * *
13444 TTAAAAGATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAACCGAGTCCTCTTGCC
451 TTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAAT-GTGAAAAATAAAAA-CAAGTCATCTTGCC
* *
13509 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCACTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
13574 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCAA
579 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCAT
13639 CCCGTCTCTTTGGCCGGCATAGTG---CCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
644 CCCGTCTCTTTGGCCGGCATAGTGCCCCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
13701 G
709 G
* *
13702 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGAGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GTTGCGGCAGCACATGCTGGGC
13767 TCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAA
65 TCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATCGTCGGAGAA
* * * *
13832 CCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGTGCACACATGATATG
129 CCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG
* * *
13897 TGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCGTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13962 ACCCCCTTAAAAAGCATTTGAGATTTTACA-----GC--CAGTAGCCATTAAAGTGTCTGAAATG
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATG
* *
14020 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTCAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
14085 GCATG-CAAC-AAAATACAAGGATCGCGTCTACCAAGTTTGGGGCAAAAATCCTTTTGAAAAAAT
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAA--CTCTCGAAAAAAT
* * *
14148 TTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAAATGTGAAAAATAGAAAACAAGTCGTCTTGC
450 TTTAAAAAATCTCGAACCGTAAAAAGTTT-AAAAAATGTGAAAAATA-AAAACAAGTCATCTTGC
* * * *
14213 CATGAAACTTCTCGTGAATGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
14278 CGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
578 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCA
* * * * **
14343 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCC-GCCCGCTCGTCTAATCGGTTGGCT
643 TCCCGTCTCTTTGGCCGGCATAGTGCCC-CCCGCCCG-CCTGCCCGCTCGTTTCGTCGGTTGGCT
14407 TAGG
706 TAGG
* *
14411 CATATGGAGTTCATTCCTAGTCTAAGA
1 CATACGGAGTTCATTCCCAGTCTAAGA
14438 CCGGATTGGA
Statistics
Matches: 1292, Mismatches: 132, Indels: 53
0.87 0.09 0.04
Matches are distributed among these distances:
703 33 0.03
704 4 0.00
705 287 0.22
706 10 0.01
708 2 0.00
709 60 0.05
710 187 0.14
711 4 0.00
712 80 0.06
713 68 0.05
714 166 0.13
715 2 0.00
716 164 0.13
717 87 0.07
718 134 0.10
719 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGGCAGCACATGCTGGGCT
CAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCGGAGAACC
TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTCGAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTAAAAAATGTGAAAAATAAAAACAAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCT
CTTTGGCCGGCATAGTGCCCCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGG
Found at i:15417 original size:26 final size:26
Alignment explanation
Indices: 15388--15440 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378 GTTGACTTAG
*
15388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15414 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15440 G
1 G
15441 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17143 original size:26 final size:26
Alignment explanation
Indices: 17107--17159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17097 GTTGACTTAG
17107 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
17133 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17159 G
1 G
17160 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:21821 original size:683 final size:682
Alignment explanation
Indices: 20503--22402 Score: 2964
Period size: 683 Copynumber: 2.8 Consensus size: 682
20493 GAGAACCTGA
** *
20503 TCGG-CGGCATTACGGTTTCGGTGATC-GGGAGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
1 TCGGACGGCATTGGGGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATG
* * *
20566 GGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCG
65 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
20631 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
130 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
20696 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTATTTTGTGCAT
195 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCAT
* *
20761 GCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATATT
260 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTT
* *
20826 AAAAAATCCTGAACCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
324 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
20891 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
389 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
20956 ACGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
454 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
21021 CGACCCTCTGGCCGGCTGAGCGCCCGCACGGTCGTTTCGTGGCATGAATTAGGCATACGGAGTTC
519 CGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCATGAATTAGGCATACGGAGTTC
* * * * *
21086 ATTCCCTATCTAAGATCATATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGC
584 ATTCCCTATCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGA
* *
21151 TGGTGCCGTATTTTTCTTCACCGAGGTACCATCG
649 TGGTGCCGCATTTTTCTTCACCGAGGCACCATCG
* * **
21185 TCGGACGGTATTGGGGTTTCGGTGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTACGATGG
1 TCGGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
* * *
21250 GTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCC
66 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
21315 TTAAAGAGTATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
131 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
21380 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
196 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
* * *
21445 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACGCCTTCCAAAAAATTTTTA
261 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTA
** * *
21510 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
325 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
21575 AAACTTCACGTGAAGGCTTAAAGGACCATTGTACT-AATTTACAAGCCATAAAAATGGCATTGGC
390 AAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGGCATTGGC
* *
21639 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTGCGCATCC
454 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
21704 CGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGAATTAGGCATACGGAGTTC
519 CGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCATGAATTAGGCATACGGAGTTC
** * * *
21769 ATTCCC-AGTCTAAGATCAGATCGGATTGAGGGTTGCGATAGGACATGCTGGGCTTGAGCATGTG
584 ATTCCCTA-TCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTG
* *
21833 ATGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
648 ATGGTGCCGCATTTTTCTTCACCGAGGCACCATCG
* ** * *
21868 TCGGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGTGTGCACATGATGTGTGAT
1 TCGGACGGCATTGGGGTTTCGGTGATCGGGGGGG-CCGGGGG-GTGTGCGCACATGATGTGTGAT
* * * *
21933 GGGTGCTAGTACTTGGCCCTTATATTTGCCCCTTATCCCTCATCAAACCTGGAGAACTCACACCC
64 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
21998 TCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGG
129 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
22063 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCA
194 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCA
* * * * *
22128 TGCGAACAAAAATTCAAGGATCACGTCTACCAAGTTTTGGGCCAAAGCTCCTTCCCAAAAAAATT
259 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAATTT
* * ** *
22193 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAACGGAAGACGAGTCATCTTGCCA
323 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
**
22258 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCGCAAGCCATAAAAATGGCATTGG
388 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
22323 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CGGCAT
453 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCAT
* *
22387 CCCGTCTCTCTGGCCG
517 CCCGACCCTCTGGCCG
22403 ACGTAGTACC
Statistics
Matches: 1108, Mismatches: 100, Indels: 17
0.90 0.08 0.01
Matches are distributed among these distances:
682 11 0.01
683 638 0.58
684 15 0.01
685 436 0.39
686 8 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (682 bp):
TCGGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
ACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCATGAATTAGGCATACGGAGTTCAT
TCCCTATCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGATG
GTGCCGCATTTTTCTTCACCGAGGCACCATCG
Found at i:25237 original size:26 final size:26
Alignment explanation
Indices: 25208--25260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25198 GTTGACTTAG
*
25208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25234 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25260 G
1 G
25261 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26956 original size:26 final size:26
Alignment explanation
Indices: 26927--26979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26917 GTTGACTTAG
26927 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
26953 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
26979 G
1 G
26980 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Done.