genome.fa.s343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168168.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28332

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2097--2149	4	13.2	4	75	0	52	22	26	5	45	1.74
2109--2165	24	2.4	24	87	0	78	24	21	5	49	1.70
3969--4007	18	2.2	18	95	0	69	28	15	12	43	1.83
4939--4989	24	2.1	24	85	7	68	74	0	19	5	1.02
5951--6225	33	8.5	32	72	6	167	28	19	18	33	1.95
5918--6153	65	3.7	64	90	3	318	28	19	18	33	1.96
5914--6193	33	8.7	33	71	8	184	28	19	18	33	1.95
6049--6225	98	1.8	98	82	2	230	28	19	18	33	1.95
7413--7481	36	1.9	36	87	0	102	15	14	17	52	1.75
7460--7917	109	4.2	109	74	5	336	20	19	13	46	1.83
7872--7953	36	2.3	35	83	6	101	18	18	12	51	1.76
7768--8057	145	2.0	144	83	3	368	20	21	12	46	1.83
7923--8657	218	3.4	216	79	6	730	21	19	13	46	1.83
7939--8655	109	6.6	108	79	4	636	21	19	13	46	1.83
8351--8422	36	2.0	36	83	5	92	19	18	12	50	1.78
8566--8726	71	2.3	71	90	0	241	19	20	14	44	1.86
8466--8835	180	2.1	179	84	2	483	21	18	14	45	1.84
8638--8996	109	3.4	107	77	9	367	20	20	13	45	1.85
9293--9326	17	2.0	17	94	0	59	67	2	0	29	1.05
9322--9351	11	2.8	11	95	5	53	86	0	13	0	0.57
10633--10725	3	31.3	3	93	2	161	66	1	0	32	0.99
10844--11014	29	5.9	29	76	10	161	48	29	1	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10844--11007	59	2.8	59	77	5	172	48	29	1	20	1.57
10916--10992	14	5.5	13	69	15	55	49	31	1	18	1.56
11009--11054	16	3.1	16	70	23	55	45	36	0	17	1.49
11009--11071	28	2.2	28	91	0	99	49	33	0	17	1.47
11090--11190	30	3.4	29	75	13	73	46	26	3	22	1.69
13218--13255	18	2.1	19	85	5	51	44	10	7	36	1.68
22496--22532	20	1.9	20	88	5	58	75	2	16	5	1.10
22857--23022	82	2.0	82	95	3	300	41	12	2	43	1.56
22879--23046	82	2.1	80	83	9	207	42	14	4	38	1.67
25256--25288	16	2.0	17	88	5	50	60	0	9	30	1.27
27920--28050	67	2.0	64	92	4	217	39	14	9	35	1.79

Tables:   1

The End!