genome.fa.s344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168169.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28205

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593--618	1	26.0	1	100	0	52	0	0	0	100	0.00
1588--1638	22	2.4	22	93	3	86	50	3	7	37	1.50
2602--2642	15	2.5	17	80	11	59	14	4	2	78	1.03
2680--2731	25	2.1	25	96	0	95	21	13	15	50	1.78
2685--2738	25	2.2	25	86	0	72	24	12	20	42	1.87
2818--2867	15	3.1	15	84	15	73	32	0	8	60	1.26
2827--2864	18	2.1	18	100	0	76	26	0	10	63	1.27
2866--2899	17	2.0	17	94	0	59	29	0	8	61	1.26
2901--2948	18	2.7	18	93	0	78	29	6	4	60	1.40
2894--2985	36	2.6	36	81	11	100	27	7	2	63	1.33
2815--2984	18	9.4	17	69	22	53	29	3	5	61	1.34
3059--3440	35	11.4	35	80	13	360	47	0	2	49	1.16
2996--3440	151	3.0	151	89	7	636	46	0	2	50	1.20
3225--3427	8	23.5	8	71	15	111	51	0	1	46	1.12
3452--3579	4	32.2	4	70	24	85	71	3	0	24	1.08
3232--3440	35	6.0	35	96	2	370	50	0	2	46	1.14
3465--3542	13	6.5	13	79	19	82	71	5	0	23	1.05
3458--3575	45	2.7	44	90	6	186	71	4	0	23	1.09
5664--5943	30	9.3	30	100	0	560	16	23	23	36	1.94
5957--6191	18	13.1	18	95	3	388	22	14	12	51	1.75
6507--6544	18	2.1	18	100	0	76	28	21	15	34	1.94
8350--8518	78	2.2	78	97	0	320	35	8	15	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8501--8533	15	2.2	15	100	0	66	48	0	6	45	1.27
8594--8626	15	2.2	15	100	0	66	48	0	6	45	1.27
8423--8699	93	3.0	93	100	0	554	36	7	14	41	1.74
11088--11139	21	2.6	20	90	6	79	65	0	0	34	0.93
11088--11139	6	9.0	6	83	12	65	65	0	0	34	0.93
13079--13124	23	2.0	23	100	0	92	26	21	4	47	1.69
18608--18651	21	2.1	21	100	0	88	22	9	13	54	1.67
18608--18659	21	2.5	21	90	6	70	26	7	11	53	1.63
18830--18908	20	4.0	20	83	3	115	65	0	5	29	1.13
19140--19203	24	2.6	25	90	5	103	57	0	0	42	0.98
19139--19177	18	2.2	18	100	0	78	56	0	0	43	0.99
19185--19212	14	2.0	14	100	0	56	57	0	0	42	0.99
19143--19217	18	4.1	18	74	19	73	60	0	0	40	0.97
21367--21396	15	2.0	15	100	0	60	20	13	13	53	1.72
21982--22012	14	2.2	14	100	0	62	29	12	6	51	1.65
23298--23338	18	2.3	18	95	0	73	53	4	4	36	1.44
23503--23554	10	5.1	10	78	17	54	53	7	1	36	1.41
23503--23555	13	3.9	14	79	18	58	54	7	1	35	1.40
23534--24275	180	4.1	180	98	0	1407	46	11	11	30	1.75
23534--24275	359	2.1	361	97	1	1409	46	11	11	30	1.75
24288--24312	13	1.9	13	100	0	50	96	4	0	0	0.24
24895--24991	48	2.0	48	95	0	176	36	5	23	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25178--25209	9	3.6	9	91	0	55	40	0	40	18	1.51
25171--25218	18	2.6	18	76	3	60	41	2	43	12	1.54
25741--25774	15	2.3	15	94	0	59	47	0	17	35	1.48
25814--26126	12	26.3	12	81	14	364	59	7	9	22	1.54
25951--26128	18	9.9	18	79	13	197	63	6	9	20	1.46
26286--26724	72	6.1	72	100	0	878	48	16	12	22	1.80
26820--26864	21	2.1	21	100	0	90	62	0	17	20	1.33
27339--27447	51	2.1	52	88	8	159	66	5	24	3	1.30
27363--27436	40	1.9	37	81	13	87	64	5	27	2	1.28
27404--27450	25	1.9	25	82	4	60	70	6	21	2	1.20
27805--27876	24	3.0	24	100	0	144	62	12	12	12	1.55
28130--28177	21	2.3	21	96	0	87	50	8	22	18	1.74

Tables:   1

The End!