Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 255648
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
File 2 of 6
Found at i:49723 original size:9 final size:9
Alignment explanation
Indices: 49692--49750 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
49682 TATTTATTTC
*
49692 AAATCATTA
1 AAATAATTA
*
49701 AAATAATAA
1 AAATAATTA
49710 TAAATAATTA
1 -AAATAATTA
*
49720 AAATAAATA
1 AAATAATTA
*
49729 TAATAATTA
1 AAATAATTA
49738 TAAATAACTTA
1 -AAATAA-TTA
49749 AA
1 AA
49751 TATATAATAG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
9 22 0.55
10 15 0.38
11 3 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATAATTA
Found at i:49733 original size:28 final size:31
Alignment explanation
Indices: 49702--49805 Score: 88
Period size: 33 Copynumber: 3.3 Consensus size: 31
49692 AAATCATTAA
49702 AATAATAATAAATAA-TTAAA-ATA-AATAT
1 AATAATAATAAATAACTTAAATATATAATAT
*
49730 AATAATTATAAATAACTTAAATATATAATAGTT
1 AATAATAATAAATAACTTAAATATATAATA--T
* * * *
49763 ATTAATATTATATAAATAATAAATATATAATAT
1 AATAATAATAAATAACT--TAAATATATAATAT
*
49796 ATTATATAAT
1 AATA-ATAAT
49806 TATATAGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
28 14 0.23
29 5 0.08
30 3 0.05
31 4 0.07
33 18 0.30
34 4 0.07
35 13 0.21
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (31 bp):
AATAATAATAAATAACTTAAATATATAATAT
Found at i:49789 original size:15 final size:15
Alignment explanation
Indices: 49705--49792 Score: 51
Period size: 15 Copynumber: 5.6 Consensus size: 15
49695 TCATTAAAAT
49705 AATA-ATAAATAATTA
1 AATATATAAATAA-TA
49720 AA-ATA-AATATAAT-
1 AATATATAA-ATAATA
49733 AAT-TATAAATAACTTA
1 AATATATAAATAA--TA
*
49749 AATATATAATAGTTATTA
1 AATATATAA-A--TAATA
49767 ATATTATATAAATAATA
1 A-A-TATATAAATAATA
49784 AATATATAA
1 AATATATAA
49793 TATATTATAT
Statistics
Matches: 58, Mismatches: 2, Indels: 26
0.67 0.02 0.30
Matches are distributed among these distances:
13 8 0.14
14 6 0.10
15 15 0.26
16 4 0.07
17 10 0.17
18 4 0.07
19 2 0.03
20 9 0.16
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (15 bp):
AATATATAAATAATA
Found at i:49801 original size:25 final size:25
Alignment explanation
Indices: 49767--49832 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 25
49757 ATAGTTATTA
49767 ATATTATATAAATAATAAATA-TATAAT
1 ATATTATAT-AAT--TAAATAGTATAAT
*
49794 ATATTATATAATTATATAGTATAAT
1 ATATTATATAATTAAATAGTATAAT
49819 ATATTAGTATAATT
1 ATATTA-TATAATT
49833 TATAAATATG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
24 5 0.14
25 12 0.33
26 10 0.28
27 9 0.25
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
ATATTATATAATTAAATAGTATAAT
Found at i:49804 original size:20 final size:20
Alignment explanation
Indices: 49767--49822 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
49757 ATAGTTATTA
*
49767 ATATTATATAA-ATAATAAAT
1 ATATAATATAATAT-ATAAAT
* *
49787 ATATAATATATTATATAATT
1 ATATAATATAATATATAAAT
*
49807 ATATAGTATAATATAT
1 ATATAATATAATATAT
49823 TAGTATAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATATAATATAATATATAAAT
Found at i:49808 original size:35 final size:35
Alignment explanation
Indices: 49705--49811 Score: 105
Period size: 35 Copynumber: 3.0 Consensus size: 35
49695 TCATTAAAAT
* * *
49705 AATAATAAATA-ATTAAAATA-AATATAATAATTATA
1 AATAATAAATATA-TAATATATTATATAATTA-TATA
49740 AATAACTTAAATATATAATAGTTATTA-AT-ATTATATA
1 AATAA--TAAATATATAATA--TATTATATAATTATATA
49777 AATAATAAATATATAATATATTATATAATTATATA
1 AATAATAAATATATAATATATTATATAATTATATA
49812 GTATAATATA
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
33 5 0.08
34 2 0.03
35 26 0.43
37 19 0.31
38 4 0.07
39 4 0.07
40 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (35 bp):
AATAATAAATATATAATATATTATATAATTATATA
Found at i:49816 original size:13 final size:13
Alignment explanation
Indices: 49788--49831 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
49778 ATAATAAATA
49788 TATAATATATTA-
1 TATAATATATTAG
49800 TATAAT-TATATAG
1 TATAATATAT-TAG
49813 TATAATATATTAG
1 TATAATATATTAG
49826 TATAAT
1 TATAAT
49832 TTATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.10
12 8 0.28
13 15 0.52
14 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (13 bp):
TATAATATATTAG
Found at i:49829 original size:20 final size:20
Alignment explanation
Indices: 49767--49829 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
49757 ATAGTTATTA
* *
49767 ATATTATATAA-ATAATAAAT
1 ATATAATATAATAT-ATAAGT
* *
49787 ATATAATATATTATATAATT
1 ATATAATATAATATATAAGT
* *
49807 ATATAGTATAATATATTAGT
1 ATATAATATAATATATAAGT
49827 ATA
1 ATA
49830 ATTTATAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
20 33 0.94
21 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
ATATAATATAATATATAAGT
Found at i:49836 original size:25 final size:25
Alignment explanation
Indices: 49788--49836 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
49778 ATAATAAATA
49788 TATAATATATTATATAATTATATAG
1 TATAATATATTATATAATTATATAG
49813 TATAATATATTAGTATAATT-TATA
1 TATAATATATTA-TATAATTATATA
49837 AATATGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
TATAATATATTATATAATTATATAG
Found at i:50087 original size:22 final size:23
Alignment explanation
Indices: 50059--50109 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
50049 AATTTAAATT
50059 ATAATAATTACAAT-TTATTATA
1 ATAATAATTACAATATTATTATA
* *
50081 ATAATAATTATAATATTATTTTA
1 ATAATAATTACAATATTATTATA
*
50104 TTAATA
1 ATAATA
50110 TTTTAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
ATAATAATTACAATATTATTATA
Found at i:50409 original size:27 final size:28
Alignment explanation
Indices: 50369--50430 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
50359 TACAAATAAT
50369 ATATAATATATATTTATA-TATTTGAATA
1 ATATAATATATATTT-TACTATTTGAATA
* *
50397 ATATCATAT-TATTTTACTATTTGATTA
1 ATATAATATATATTTTACTATTTGAATA
50424 AT-TAATA
1 ATATAATA
50431 ATTGTTGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 6 0.20
27 16 0.53
28 8 0.27
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (28 bp):
ATATAATATATATTTTACTATTTGAATA
Found at i:50907 original size:13 final size:13
Alignment explanation
Indices: 50889--50915 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50879 TATATTAATA
50889 AATTTAATATATT
1 AATTTAATATATT
50902 AATTTAATATATT
1 AATTTAATATATT
50915 A
1 A
50916 TAATTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTAATATATT
Found at i:50951 original size:42 final size:42
Alignment explanation
Indices: 50884--51020 Score: 133
Period size: 42 Copynumber: 3.2 Consensus size: 42
50874 AATTGTATAT
*
50884 TAATA-AATTTAATATATTA-ATTTAATATATTATAATTAAA
1 TAATATAATTTAATATATTATACTTAATATATTATAATTAAA
*
50924 TAATATAATTTCAAT-TAGTTATA-TTAATAATAATTATTATTAAA
1 TAATATAATTT-AATATA-TTATACTTAAT-AT-ATTATAATTAAA
*
50968 TAATTATAAATTTTATATATTATACTT-ATAT-TTATAATATAAA
1 TAA-TAT-AATTTAATATATTATACTTAATATATTATAAT-TAAA
*
51011 TTATATAATT
1 TAATATAATT
51021 AGTTATAATT
Statistics
Matches: 82, Mismatches: 4, Indels: 21
0.77 0.04 0.20
Matches are distributed among these distances:
40 5 0.06
41 11 0.13
42 20 0.24
43 9 0.11
44 16 0.20
45 12 0.15
46 9 0.11
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (42 bp):
TAATATAATTTAATATATTATACTTAATATATTATAATTAAA
Found at i:51014 original size:51 final size:53
Alignment explanation
Indices: 50915--51054 Score: 114
Period size: 52 Copynumber: 2.7 Consensus size: 53
50905 TTAATATATT
* * * * *
50915 ATAATTA-AATAATATAAT-TTCAATTAGTTATATTAATAATAATTATTATT-AA
1 ATAATTATAATTATATAATATT-AA-TAATTATATTTATAATAATAATTATATAA
* *
50967 ATAATTATAAATTTTAT-ATATT-ATACTTATATTTATAAT-ATAAATTATATAA
1 ATAATTAT-AATTATATAATATTAATAATTATATTTATAATAAT-AATTATATAA
* *
51019 TTAGTTATAATTATATAATATTAATAATTA-ATTTAT
1 ATAATTATAATTATATAATATTAATAATTATATTTAT
51055 TGTTCATAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
50 2 0.03
51 26 0.37
52 27 0.38
53 8 0.11
54 8 0.11
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (53 bp):
ATAATTATAATTATATAATATTAATAATTATATTTATAATAATAATTATATAA
Found at i:51033 original size:36 final size:35
Alignment explanation
Indices: 50908--51034 Score: 91
Period size: 36 Copynumber: 3.5 Consensus size: 35
50898 TATTAATTTA
* *
50908 ATATATTATAATTA-AATAATATAATT-TCAATTAGTT
1 ATATATTATAATTATATTAA-ATAATTATAAATTA--T
* *
50944 ATATTAATAATAATTATTATTAAATAATTATAAATTTT
1 ATA-T-ATTATAATTA-TATTAAATAATTATAAATTAT
* *
50982 ATATATTATACTTATATT-TATAA-TATAAATTAT
1 ATATATTATAATTATATTAAATAATTATAAATTAT
51015 ATAATTAGTTATAATTATAT
1 AT-A-TA-TTATAATTATAT
51035 AATATTAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
33 11 0.15
34 5 0.07
35 6 0.08
36 22 0.30
37 2 0.03
38 13 0.18
39 6 0.08
40 9 0.12
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (35 bp):
ATATATTATAATTATATTAAATAATTATAAATTAT
Found at i:51033 original size:87 final size:86
Alignment explanation
Indices: 50886--51048 Score: 190
Period size: 87 Copynumber: 1.9 Consensus size: 86
50876 TTGTATATTA
* *
50886 ATAAATTTAATATATTAATTTAATATATTATAATTAAATAATATAATTTCAATTAGTTATATTAA
1 ATAAATTTAATATATTAACTTAATATATTATAATTAAATAATATAATTTCAATTAATTATA-TAA
*
50951 TAATAATTATTATTAAATAATT
65 TAATAATAATTATTAAATAATT
* * *
50973 ATAAATTTTATATATTATACTT-ATAT-TTATAATATAAATTATATAA-TT-AGTTATAATTATA
1 ATAAATTTAATATATTA-ACTTAATATATTATAAT-TAAATAATATAATTTCA-AT-TAATTATA
*
51034 TAATATTAATAATTA
62 TAATAATAATAATTA
51049 ATTTATTGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
85 1 0.02
86 23 0.35
87 38 0.58
88 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (86 bp):
ATAAATTTAATATATTAACTTAATATATTATAATTAAATAATATAATTTCAATTAATTATATAAT
AATAATAATTATTAAATAATT
Found at i:51213 original size:27 final size:28
Alignment explanation
Indices: 51181--51252 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
51171 TACTATATTT
51181 TATAATTATAATTTA-ATATAAATTA-A
1 TATAATTATAATTTATATATAAATTATA
* *
51207 TATTAATT-TATTTTATTTATAAATTATA
1 TA-TAATTATAATTTATATATAAATTATA
*
51235 TATAATTATTAACTTATA
1 TATAATTA-TAATTTATA
51253 ATCTTATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
26 8 0.22
27 19 0.53
28 3 0.08
29 6 0.17
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (28 bp):
TATAATTATAATTTATATATAAATTATA
Found at i:51323 original size:69 final size:69
Alignment explanation
Indices: 51186--51323 Score: 158
Period size: 70 Copynumber: 2.0 Consensus size: 69
51176 TATTTTATAA
* * * * *
51186 TTATAATTTAATATAAATTAATATTAATTTATTTTATTTATAAATTATATATAATTATTAACTTA
1 TTATAATTTAATAT-AATTAATAATAATTGATGTTATTTAAAAATTATATATAATTATTAAATTA
51251 TAATC
65 TAATC
51256 TTATAATTATAATAT-ATTAATAATAATGTGATGTTATTTAAATAATTATATA-AA-TA-TAAAT
1 TTATAATT-TAATATAATTAATAATAAT-TGATGTTATTTAAA-AATTATATATAATTATTAAAT
51317 TAATAAT
63 T-ATAAT
51324 AATACAATAT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
68 5 0.08
69 18 0.31
70 21 0.36
71 15 0.25
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (69 bp):
TTATAATTTAATATAATTAATAATAATTGATGTTATTTAAAAATTATATATAATTATTAAATTAT
AATC
Found at i:51705 original size:18 final size:18
Alignment explanation
Indices: 51682--51750 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
51672 CTTTAATAAA
51682 TATAAATATATTATATAT
1 TATAAATATATTATATAT
* *
51700 TATAAATCTAATT-TAGAT
1 TATAAATAT-ATTATATAT
*
51718 TATATATA-ATTAAGTAATAT
1 TATAAATATATT-A-T-ATAT
51738 TA-AAATATATTAT
1 TATAAATATATTAT
51751 CTAATAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
16 3 0.08
18 19 0.49
19 9 0.23
20 8 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (18 bp):
TATAAATATATTATATAT
Found at i:51779 original size:15 final size:15
Alignment explanation
Indices: 51743--51858 Score: 57
Period size: 15 Copynumber: 7.7 Consensus size: 15
51733 AATATTAAAA
* *
51743 TATATTATCTAATAA
1 TATATTATATAATAT
51758 TAT-TTATATAATAT
1 TATATTATATAATAT
*
51772 TATATTATTTAATTAAT
1 TATATTATATAA-T-AT
*
51789 AAGTATT-TA-AATAT
1 TA-TATTATATAATAT
*
51803 TAATATTA-ATTATATT
1 T-ATATTATATAATA-T
*
51819 TATATTAAAT-ATAT
1 TATATTATATAATAT
51833 TATAATTAATTATAATA-
1 TAT-ATT-A-TATAATAT
51850 TA-ATTATAT
1 TATATTATAT
51859 TTATTATAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 28
0.69 0.07 0.24
Matches are distributed among these distances:
13 3 0.04
14 24 0.30
15 30 0.38
16 8 0.10
17 8 0.10
18 7 0.09
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (15 bp):
TATATTATATAATAT
Found at i:51780 original size:8 final size:8
Alignment explanation
Indices: 51764--51897 Score: 50
Period size: 8 Copynumber: 16.8 Consensus size: 8
51754 ATAATATTTA
51764 TATAATAT
1 TATAATAT
*
51772 TATATTAT
1 TATAATAT
51780 T-TAAT-T
1 TATAATAT
*
51786 AATAAGTAT
1 TATAA-TAT
51795 T-TAA-A-
1 TATAATAT
51800 TATTAATAT
1 TA-TAATAT
*
51809 TAATTATAT
1 T-ATAATAT
51818 T-T-ATAT
1 TATAATAT
*
51824 TAAATATAT
1 TATA-ATAT
51833 TATAATTAAT
1 TATAA-T-AT
51843 TATAATAT
1 TATAATAT
* *
51851 AATTATATT
1 TATAATA-T
* *
51860 TATTATAA
1 TATAATAT
* *
51868 TGTAATAA
1 TATAATAT
51876 TATAA-AT
1 TATAATAT
51883 TATAATAT
1 TATAATAT
51891 TAATAAT
1 T-ATAAT
51898 TTGATATATA
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
5 1 0.01
6 7 0.07
7 16 0.17
8 34 0.36
9 29 0.31
10 8 0.08
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (8 bp):
TATAATAT
Found at i:51787 original size:57 final size:57
Alignment explanation
Indices: 51716--51844 Score: 149
Period size: 57 Copynumber: 2.2 Consensus size: 57
51706 TCTAATTTAG
*
51716 ATTATATATAATTAAGTAA-TATTAAAATA-TATTATCTAATAATATTTATA-TAATATTAT
1 ATTATAT-TAATTAA-TAAGTATTAAAATATTAATAT-TAATAATATTTATATTAA-A-TAT
* *
51775 ATTAT-TTAATTAATAAGTATTTAAATATTAATATTAATTATATTTATATTAAATAT
1 ATTATATTAATTAATAAGTATTAAAATATTAATATTAATAATATTTATATTAAATAT
51831 ATTATAATTAATTA
1 ATTAT-ATTAATTA
51845 TAATATAATT
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
56 11 0.18
57 30 0.48
58 16 0.26
59 5 0.08
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (57 bp):
ATTATATTAATTAATAAGTATTAAAATATTAATATTAATAATATTTATATTAAATAT
Found at i:51845 original size:30 final size:29
Alignment explanation
Indices: 51716--51846 Score: 103
Period size: 28 Copynumber: 4.5 Consensus size: 29
51706 TCTAATTTAG
* *
51716 ATTATATATAATTA-AGTAATATTAAAATAT
1 ATTATAT-TAATTATATTTATATT-AAATAT
* *
51746 ATTAT-CTAATAATATTTATA-TAATATTAT
1 ATTATATTAATTATATTTATATTAA-A-TAT
**
51775 ATTAT-TTAATTAATAAGTAT-TTAAATAT
1 ATTATATTAATT-ATATTTATATTAAATAT
*
51803 -TAATATTAATTATATTTATATTAAATAT
1 ATTATATTAATTATATTTATATTAAATAT
51831 ATTATAATTAATTATA
1 ATTAT-ATTAATTATA
51847 ATATAATTAT
Statistics
Matches: 80, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
27 11 0.14
28 24 0.30
29 21 0.26
30 24 0.30
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (29 bp):
ATTATATTAATTATATTTATATTAAATAT
Found at i:51864 original size:20 final size:20
Alignment explanation
Indices: 51803--51890 Score: 90
Period size: 20 Copynumber: 4.3 Consensus size: 20
51793 ATTTAAATAT
51803 TAATATTAATTATATTTATATTA
1 TAATA-TAATTATA-TTA-ATTA
51826 -AATAT-ATTATAATTAATTA
1 TAATATAATTAT-ATTAATTA
*
51845 TAATATAATTATATTTATTA
1 TAATATAATTATATTAATTA
* * *
51865 TAATGTAATAATATAAATTA
1 TAATATAATTATATTAATTA
51885 TAATAT
1 TAATAT
51891 TAATAATTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
19 4 0.07
20 41 0.73
21 7 0.12
22 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (20 bp):
TAATATAATTATATTAATTA
Found at i:51864 original size:30 final size:29
Alignment explanation
Indices: 51799--51898 Score: 98
Period size: 30 Copynumber: 3.4 Consensus size: 29
51789 AAGTATTTAA
* *
51799 ATATTA-ATATTAATTATATTTATATTAAAT
1 ATATTATA-ATTAATTATATATA-ATTATAT
51829 ATATTATAATTAATTATAATATAATTATAT
1 ATATTATAATTAATTAT-ATATAATTATAT
* *
51859 TTATTATAATGTAATAATATA-AATTATA-
1 ATATTATAAT-TAATTATATATAATTATAT
51887 ATATTAATAATT
1 ATATT-ATAATT
51899 TGATATATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
28 5 0.08
29 12 0.20
30 33 0.54
31 11 0.18
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (29 bp):
ATATTATAATTAATTATATATAATTATAT
Found at i:51866 original size:15 final size:15
Alignment explanation
Indices: 51807--51898 Score: 77
Period size: 15 Copynumber: 6.2 Consensus size: 15
51797 AAATATTAAT
51807 ATTAATTATATT-TA
1 ATTAATTATATTATA
*
51821 TATTAAATATATTATA
1 -ATTAATTATATTATA
*
51837 ATTAATTATAATATA
1 ATTAATTATATTATA
51852 ATTATATT-TATTATA
1 ATTA-ATTATATTATA
*
51867 ATGTAATAATA-TA-A
1 AT-TAATTATATTATA
*
51881 ATT-ATAATATTAATA
1 ATTAATTATATT-ATA
51896 ATT
1 ATT
51899 TGATATATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
12 6 0.09
13 2 0.03
14 4 0.06
15 44 0.68
16 9 0.14
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (15 bp):
ATTAATTATATTATA
Found at i:52190 original size:21 final size:21
Alignment explanation
Indices: 52145--52236 Score: 58
Period size: 24 Copynumber: 4.0 Consensus size: 21
52135 TTAATATTTG
* * * *
52145 AATAATTATCAAATGACTAAA
1 AATAATTATTAAATTATTAAT
52166 AATAATTATTAAATTATTAAT
1 AATAATTATTAAATTATTAAT
* *
52187 AATAACAATTATTACATAATTAAATT
1 AAT---AATTATTAAATTATT-AA-T
52213 ACATAATTATTAATATTAGTTAAT
1 A-ATAATTATTAA-ATTA-TTAAT
52237 CAAGTTATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
21 20 0.36
24 22 0.40
25 7 0.13
26 4 0.07
27 2 0.04
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
AATAATTATTAAATTATTAAT
Found at i:52196 original size:24 final size:25
Alignment explanation
Indices: 52169--52236 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 25
52159 GACTAAAAAT
52169 AATTATTAAATTATTAATAATA-AC
1 AATTATTAAATTATTAATAATACAC
* * * *
52193 AATTATTACATAATTAA-ATTACAT
1 AATTATTAAATTATTAATAATACAC
52217 AATTATTAATATTAGTTAAT
1 AATTATTAA-ATTA-TTAAT
52237 CAAGTTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 3 0.09
24 24 0.71
25 3 0.09
26 4 0.12
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (25 bp):
AATTATTAAATTATTAATAATACAC
Found at i:52212 original size:16 final size:15
Alignment explanation
Indices: 52168--52236 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 15
52158 TGACTAAAAA
*
52168 TAATTATTAAATTAT
1 TAATAATTAAATTAT
*
52183 TAATAATAACAATTAT
1 TAATAATTA-AATTAT
*
52199 TACATAATTAAATTACA
1 TA-ATAATTAAATTA-T
*
52216 TAATTATTAATATTAGT
1 TAATAATTAA-ATTA-T
52233 TAAT
1 TAAT
52237 CAAGTTATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
15 7 0.16
16 20 0.47
17 16 0.37
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (15 bp):
TAATAATTAAATTAT
Found at i:52213 original size:13 final size:13
Alignment explanation
Indices: 52197--52221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52187 AATAACAATT
52197 ATTACATAATTAA
1 ATTACATAATTAA
52210 ATTACATAATTA
1 ATTACATAATTA
52222 TTAATATTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTACATAATTAA
Found at i:52428 original size:12 final size:12
Alignment explanation
Indices: 52411--52440 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
52401 TAAAATAGTA
52411 ATAATATATATT
1 ATAATATATATT
52423 ATAATATATATT
1 ATAATATATATT
52435 A-AATAT
1 ATAATAT
52441 TGTTAATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATAATATATATT
Found at i:52668 original size:21 final size:22
Alignment explanation
Indices: 52642--52692 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
52632 ATACTTTAAT
52642 TATAATTAT-AGTTA-AATATAA
1 TATAATTATAAGTTATAATA-AA
*
52663 TATAATAATAAGTTATAATAAA
1 TATAATTATAAGTTATAATAAA
52685 T-TAATTAT
1 TATAATTAT
52693 TTGAATAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 14 0.54
22 8 0.31
23 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
TATAATTATAAGTTATAATAAA
Found at i:52937 original size:15 final size:15
Alignment explanation
Indices: 52913--52949 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
52903 TTATTATAAG
52913 ATAT-TATAATAATT
1 ATATATATAATAATT
52927 ATATATATAATAATT
1 ATATATATAATAATT
52942 ATATATAT
1 ATATATAT
52950 TTAAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATATAATAATT
Found at i:52943 original size:34 final size:34
Alignment explanation
Indices: 52879--52944 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
52869 TTAATAGTTA
* * *
52879 ATATTATATTAATAATTTATTAATTTATTATAAG
1 ATATTATAATAATAATATATTAATTAATTATAAG
*
52913 ATATTATAATAATTATATATATAA-TAATTATA
1 ATATTATAATAATAATATAT-TAATTAATTATA
52945 TATATTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 24 0.89
35 3 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (34 bp):
ATATTATAATAATAATATATTAATTAATTATAAG
Found at i:53877 original size:9 final size:9
Alignment explanation
Indices: 53863--53896 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
53853 AATAGAATAT
53863 TTAATTTAA
1 TTAATTTAA
53872 TTAATTTAA
1 TTAATTTAA
53881 TTATATTTAA
1 TTA-ATTTAA
53891 -TAATTT
1 TTAATTT
53897 GTCATAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.17
9 14 0.58
10 6 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTAATTTAA
Found at i:54684 original size:40 final size:40
Alignment explanation
Indices: 54604--54692 Score: 94
Period size: 40 Copynumber: 2.2 Consensus size: 40
54594 TATTTAACTT
* * * *
54604 ATAATATT-ATTATTATAAATTTATTTTAAAATAATTATA
1 ATAATATTAATAATTATAAAATTATTTAAAAATAATAATA
54643 ATAAATATTAATAATT-TAAAATTATTTAAATAATAA-AATA
1 AT-AATATTAATAATTATAAAATTATTTAAA-AATAATAATA
*
54683 ATTATATTAA
1 ATAATATTAA
54693 CGAGCAATTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
39 9 0.21
40 23 0.55
41 10 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (40 bp):
ATAATATTAATAATTATAAAATTATTTAAAAATAATAATA
Found at i:54728 original size:20 final size:22
Alignment explanation
Indices: 54703--54745 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
54693 CGAGCAATTG
*
54703 TTATAATTTAT-ATT-AATTAA
1 TTATAATATATAATTGAATTAA
54723 TTATAATATATAATTGAATTAA
1 TTATAATATATAATTGAATTAA
54745 T
1 T
54746 GAAGTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTATAATATATAATTGAATTAA
Found at i:55092 original size:14 final size:14
Alignment explanation
Indices: 55075--55101 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
55065 ATTATATTAT
55075 AATTATAAGTAATA
1 AATTATAAGTAATA
55089 AATTATAAGTAAT
1 AATTATAAGTAAT
55102 TAATAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
AATTATAAGTAATA
Found at i:55170 original size:36 final size:34
Alignment explanation
Indices: 55128--55201 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 34
55118 TACAAATATT
55128 TAATAATTA-AAGT-ATTATATTATATTAAGTATACTA
1 TAATAATTATAAGTAATTATA--ATA-TAAGTATAC-A
55164 TAATAATTATAAGTAATTATAATATAAGTATACA
1 TAATAATTATAAGTAATTATAATATAAGTATACA
55198 TAAT
1 TAAT
55202 TTAATTACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
34 5 0.14
35 9 0.25
36 12 0.33
37 4 0.11
38 6 0.17
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (34 bp):
TAATAATTATAAGTAATTATAATATAAGTATACA
Found at i:55223 original size:79 final size:79
Alignment explanation
Indices: 55084--55233 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 79
55074 TAATTATAAG
* * *
55084 TAATAAATTATAAGTAATTAATAATTATAATTACTACAAATATTTAATAATTAAAGTATTATATT
1 TAATAAATTATAAGTAATTAATAATTATAAGTACTACAAATATTTAATAAATAAAATATTA-ATT
55149 ATATTAAGTATACTA
65 ATATTAAGTATACTA
*
55164 TAAT-AATTATAAGTAATT-ATAA-TATAAGTA-TACATA-ATTTAATTACAAATAATAATATTA
1 TAATAAATTATAAGTAATTAATAATTATAAGTACTACAAATATTTAA-T--AAATAA-AATATTA
55224 ATTATATTAA
62 ATTATATTAA
55234 ATTATTAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
75 6 0.10
76 6 0.10
77 7 0.11
78 19 0.31
79 20 0.32
80 4 0.06
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (79 bp):
TAATAAATTATAAGTAATTAATAATTATAAGTACTACAAATATTTAATAAATAAAATATTAATTA
TATTAAGTATACTA
Found at i:55958 original size:27 final size:28
Alignment explanation
Indices: 55918--55971 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
55908 AATTGTTATA
* * *
55918 AATTGGTATTAAATTATAATATTTAATT
1 AATTGGTATGAAATAATAATAATTAATT
55946 AATTGGT-TGAAATAATAATAATTAAT
1 AATTGGTATGAAATAATAATAATTAAT
55972 AAGTTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.44
Consensus pattern (28 bp):
AATTGGTATGAAATAATAATAATTAATT
Found at i:56373 original size:23 final size:23
Alignment explanation
Indices: 56347--56393 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
56337 ATTAATAATA
*
56347 ATTATTTAACTAT-ATTATTATTT
1 ATTATATAA-TATAATTATTATTT
*
56370 ATTATATAATTTAATTATTATTT
1 ATTATATAATATAATTATTATTT
56393 A
1 A
56394 AATATTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTATATAATATAATTATTATTT
Found at i:56462 original size:34 final size:35
Alignment explanation
Indices: 56424--56504 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 35
56414 TTTCAAATAG
*
56424 AATTATATT-ATATA-TTTTATTTATAACAGTTTGA
1 AATTATATTAAT-TAGTTATATTTATAACAGTTTGA
*
56458 AATTATATTAATTAGTTATATTTATAATAG-TT-A
1 AATTATATTAATTAGTTATATTTATAACAGTTTGA
56491 ATATTA-ATTAATTA
1 A-ATTATATTAATTA
56505 TTAATATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 10 0.24
34 17 0.40
35 15 0.36
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (35 bp):
AATTATATTAATTAGTTATATTTATAACAGTTTGA
Found at i:56514 original size:16 final size:15
Alignment explanation
Indices: 56482--56527 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 15
56472 GTTATATTTA
56482 TAATAGTTAATATTAAT
1 TAATA-TTAATA-TAAT
56499 TAATTATTAATATAAT
1 TAA-TATTAATATAAT
56515 TAATATATAATAT
1 TAATAT-TAATAT
56528 TTGAATTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.11
16 13 0.48
17 9 0.33
18 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
TAATATTAATATAAT
Found at i:56967 original size:18 final size:18
Alignment explanation
Indices: 56944--56985 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
56934 AATTATTTAC
56944 TATTAATATTTTAATAAT
1 TATTAATATTTTAATAAT
56962 TATTAATATTTTAATAAT
1 TATTAATATTTTAATAAT
56980 TATTAA
1 TATTAA
56986 AAAGTCGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTAATATTTTAATAAT
Found at i:57958 original size:23 final size:22
Alignment explanation
Indices: 57931--58030 Score: 61
Period size: 21 Copynumber: 4.5 Consensus size: 22
57921 AATATAAGAC
57931 TAATATATTATAAAGTTATAATT
1 TAATATATTATAAA-TTATAATT
57954 TAATA-ATTTAATAAATTAT-ATT
1 TAATATA-TT-ATAAATTATAATT
57976 GT-AT-TATTATAATATTATAA-T
1 -TAATATATTATAA-ATTATAATT
* *
57997 AAATAT-TTATAAGTTA-ATATAT
1 TAATATATTATAAATTATA-AT-T
58019 TAATATTATTAT
1 TAATA-TATTAT
58031 TATTTTTATT
Statistics
Matches: 61, Mismatches: 3, Indels: 25
0.69 0.03 0.28
Matches are distributed among these distances:
19 1 0.02
20 8 0.13
21 16 0.26
22 14 0.23
23 13 0.21
24 9 0.15
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (22 bp):
TAATATATTATAAATTATAATT
Found at i:58022 original size:57 final size:60
Alignment explanation
Indices: 57946--58064 Score: 140
Period size: 60 Copynumber: 2.0 Consensus size: 60
57936 TATTATAAAG
* *
57946 TTATAATTTAATAATTTAATA-AATTA-TA-TTGTATTATT-ATAATATTATAATAAATAT
1 TTATAAGTTAATAATTTAATATAATTATTATTTGTATTATTCATAATA-TAAAATAAATAT
* * *
58003 TTATAAGTTAAT-ATATTAATATTATTATTATTTTTATTATTCATAATATAAAATAATTAT
1 TTATAAGTTAATAAT-TTAATATAATTATTATTTGTATTATTCATAATATAAAATAAATAT
58063 TT
1 TT
58065 TTGTTCATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
56 2 0.04
57 17 0.33
58 4 0.08
59 2 0.04
60 21 0.40
61 6 0.12
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.53
Consensus pattern (60 bp):
TTATAAGTTAATAATTTAATATAATTATTATTTGTATTATTCATAATATAAAATAAATAT
Found at i:58716 original size:16 final size:17
Alignment explanation
Indices: 58682--58735 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 17
58672 ACATTCAAAC
58682 TTTAAATATAATATTAA
1 TTTAAATATAATATTAA
58699 TTTAAA-ATAAT-TTAA
1 TTTAAATATAATATTAA
* *
58714 ATTAAAT-TAATAATAA
1 TTTAAATATAATATTAA
58730 TATTAA
1 T-TTAA
58736 CAATAATGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 13 0.42
16 8 0.26
17 10 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTAAATATAATATTAA
Found at i:58843 original size:20 final size:20
Alignment explanation
Indices: 58806--58846 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
58796 TAATTTATTA
* * *
58806 ATTATTAATATTATTATAAT
1 ATTATTAAAATAAATATAAT
58826 ATTATTAAAATAAATATAAT
1 ATTATTAAAATAAATATAAT
58846 A
1 A
58847 CATAATTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTATTAAAATAAATATAAT
Found at i:58974 original size:14 final size:14
Alignment explanation
Indices: 58957--59044 Score: 53
Period size: 14 Copynumber: 6.6 Consensus size: 14
58947 TTTATAATCT
58957 TTAATTAATTAAAA
1 TTAATTAATTAAAA
* *
58971 TTAATT-ATCATATA
1 TTAATTAATTA-AAA
* *
58985 TT-ATTTA-TAGCAA
1 TTAATTAATTA-AAA
*
58998 T-AATTTATTAAAA
1 TTAATTAATTAAAA
*
59011 TTAAGTAATT-AAA
1 TTAATTAATTAAAA
*
59024 -TAATTAATTATAA
1 TTAATTAATTAAAA
59037 TTAATTAA
1 TTAATTAA
59045 AGATTATAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
12 8 0.14
13 22 0.39
14 26 0.46
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (14 bp):
TTAATTAATTAAAA
Found at i:59294 original size:23 final size:22
Alignment explanation
Indices: 59268--59335 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
59258 TATTAAATTG
59268 ATAAATTATAATAATTTAAATA
1 ATAAATTATAATAATTTAAATA
* * *
59290 CATAAACTAAAATAATTT-ATTA
1 -ATAAATTATAATAATTTAAATA
*
59312 ATATAGTTATAATAA-TTAAATA
1 ATA-AATTATAATAATTTAAATA
59334 AT
1 AT
59336 TTATATTAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
21 5 0.14
22 16 0.44
23 15 0.42
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (22 bp):
ATAAATTATAATAATTTAAATA
Found at i:59358 original size:30 final size:29
Alignment explanation
Indices: 59299--59375 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
59289 ACATAAACTA
59299 AAATAATTTATTAATATAGTTATAATAATT
1 AAATAATTTATTAATATAG-TATAATAATT
*
59329 AAATAATTTATATTAATATA-TATTATAATTT
1 AAATAA-TT-TATTAATATAGTATAATAA-TT
**
59360 AAA-AGGTTATTAATAT
1 AAATAATTTATTAATAT
59376 TTTGGATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
28 9 0.22
29 1 0.02
30 14 0.34
31 7 0.17
32 10 0.24
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (29 bp):
AAATAATTTATTAATATAGTATAATAATT
Found at i:59898 original size:11 final size:11
Alignment explanation
Indices: 59879--59917 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
59869 TTAACTATTA
*
59879 ATAATTTAAAT
1 ATAATTTAATT
*
59890 ATAAATTAATT
1 ATAATTTAATT
59901 ATAATTTAATT
1 ATAATTTAATT
59912 ATAATT
1 ATAATT
59918 CAAAATTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATAATTTAATT
Found at i:59943 original size:19 final size:17
Alignment explanation
Indices: 59919--59969 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
59909 ATTATAATTC
59919 AAAATTGATATAAATAAAA
1 AAAATT-AT-TAAATAAAA
* *
59938 AAAATTATTATATAACA
1 AAAATTATTAAATAAAA
*
59955 AAAATTATGAAATAA
1 AAAATTATTAAATAA
59970 TAGAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 20 0.71
18 2 0.07
19 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (17 bp):
AAAATTATTAAATAAAA
Found at i:60464 original size:16 final size:16
Alignment explanation
Indices: 60440--60480 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
60430 ATTGTTAATT
*
60440 ATATAATATAATAATGA
1 ATAT-ATATAATAATCA
*
60457 ATATATATAATATTCA
1 ATATATATAATAATCA
60473 ATATATAT
1 ATATATAT
60481 TCAAATAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (16 bp):
ATATATATAATAATCA
Found at i:60596 original size:14 final size:12
Alignment explanation
Indices: 60575--60607 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
60565 AAGTTAATTA
60575 ATTATATAATAAT
1 ATTATAT-ATAAT
60588 -TTATATATAAT
1 ATTATATATAAT
60599 ATTATATAT
1 ATTATATAT
60608 TAATTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATATATAAT
Found at i:60892 original size:20 final size:20
Alignment explanation
Indices: 60869--60908 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60859 ATTATATTTA
*
60869 TTATA-TATTATAATCATATT
1 TTATAGTATTA-AATAATATT
60889 TTATAGTATTAAATAATATT
1 TTATAGTATTAAATAATATT
60909 AATTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
TTATAGTATTAAATAATATT
Found at i:61010 original size:14 final size:15
Alignment explanation
Indices: 60981--61017 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
60971 AATTAGATTT
*
60981 ATAAATTATAATTAA
1 ATAAATTATAAATAA
60996 ATAAA-TATAAATAA
1 ATAAATTATAAATAA
61010 AT-AATTAT
1 ATAAATTAT
61018 TCAAATAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 13 0.65
15 5 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAATTATAAATAA
Found at i:62490 original size:16 final size:15
Alignment explanation
Indices: 62469--62533 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 15
62459 TGAAATTTAA
*
62469 TATATTATTAACTATT
1 TATATTATTAAATA-T
62485 TATATTATTAAATAT
1 TATATTATTAAATAT
*
62500 TATATTAATAATATATT
1 TATATTATTAA-ATA-T
62517 TAATATT-TTAAATAT
1 T-ATATTATTAAATAT
62532 TA
1 TA
62534 AAATAATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
14 1 0.02
15 13 0.30
16 19 0.44
17 5 0.12
18 5 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATTAAATAT
Found at i:63720 original size:18 final size:19
Alignment explanation
Indices: 63692--63727 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
63682 TGTTTACTGA
*
63692 ACTAGTTTAAATAATTATG
1 ACTAGTTTAAACAATTATG
63711 ACTA-TTTAAACAATTAT
1 ACTAGTTTAAACAATTAT
63728 ATATTTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (19 bp):
ACTAGTTTAAACAATTATG
Found at i:64829 original size:11 final size:11
Alignment explanation
Indices: 64809--64848 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
64799 AATAATCAAT
*
64809 TTATACAATTA
1 TTATATAATTA
64820 TTATATAATTA
1 TTATATAATTA
64831 TTA-AT-ATTA
1 TTATATAATTA
64840 TTATATAAT
1 TTATATAAT
64849 AATAACAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 7 0.27
10 4 0.15
11 15 0.58
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TTATATAATTA
Found at i:64920 original size:28 final size:29
Alignment explanation
Indices: 64884--64963 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 29
64874 TATTTAAACT
*
64884 TAAAGTTATAATTATTAAACTATTA-ATA
1 TAAAATTATAATTATTAAACTATTATATA
* *
64912 TAAATTTATAATTTATAATAAATTATTATATA
1 TAAAATTATAA-TTAT--TAAACTATTATATA
64944 TAATAATTATAATTAATTAA
1 TAA-AATTATAATT-ATTAA
64964 TTAATTAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
28 10 0.23
29 4 0.09
31 12 0.28
32 8 0.19
33 9 0.21
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (29 bp):
TAAAATTATAATTATTAAACTATTATATA
Found at i:65155 original size:9 final size:9
Alignment explanation
Indices: 65122--65171 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
65112 TCAATAAATA
65122 ATTAT-ATT
1 ATTATAATT
65130 ATTATAATTT
1 ATTATAA-TT
65140 ATT-TAATT
1 ATTATAATT
65148 ATTATAATT
1 ATTATAATT
* *
65157 AATATTATT
1 ATTATAATT
65166 AATTAT
1 -ATTAT
65172 CTTAATTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
8 10 0.29
9 16 0.46
10 9 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTATAATT
Found at i:65274 original size:13 final size:15
Alignment explanation
Indices: 65256--65301 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
65246 CAAATTTAAA
65256 ATTAATA-AATTA-T
1 ATTAATATAATTATT
65269 ATTAATATTAATTATT
1 ATTAATA-TAATTATT
* *
65285 ATTAACATAATAATT
1 ATTAATATAATTATT
65300 AT
1 AT
65302 CATTATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATATAATTATT
Found at i:65295 original size:21 final size:22
Alignment explanation
Indices: 65271--65323 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
65261 TAAATTATAT
65271 TAATATTAATTATTATT-AACA
1 TAATATTAATTATTATTAAACA
*
65292 TAATAATT-ATCATTATTAAACA
1 TAAT-ATTAATTATTATTAAACA
65314 -AAT-TTAATTA
1 TAATATTAATTA
65324 AAAATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.07
20 3 0.11
21 15 0.56
22 7 0.26
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTAATTATTATTAAACA
Found at i:65494 original size:17 final size:17
Alignment explanation
Indices: 65469--65528 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 17
65459 TTGAGAAAAT
*
65469 TATTATAAATAATTTAA
1 TATTTTAAATAATTTAA
65486 TATTTTAAATTAATTTAA
1 TATTTTAAA-TAATTTAA
65504 TAATATTTATAAT-ATATTAA
1 T-AT-TTTA-AATAAT-TTAA
65524 TATTT
1 TATTT
65529 ATACTAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 8 0.22
18 11 0.30
19 6 0.16
20 10 0.27
21 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTTAAATAATTTAA
Found at i:65875 original size:17 final size:17
Alignment explanation
Indices: 65855--65899 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
65845 TGTTATAAAT
*
65855 TATTAAAATTATATTAA-
1 TATTAATATTAT-TTAAG
*
65872 TATTAATATAATTTAAG
1 TATTAATATTATTTAAG
65889 TATTAATATTA
1 TATTAATATTA
65900 ATGATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TATTAATATTATTTAAG
Found at i:65897 original size:29 final size:28
Alignment explanation
Indices: 65857--65947 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 28
65847 TTATAAATTA
*
65857 TTAAAATT-ATATTAATATTAATATAAT
1 TTAATATTAATATTAATATTAATATAAT
*
65884 TTAAGTATTAATATTAATGATTAA-ATAAC
1 TTAA-TATTAATATTAAT-ATTAATATAAT
*
65913 TTGATATTAA-ATT-A-ATTAATATAAT
1 TTAATATTAATATTAATATTAATATAAT
65938 CTT-ATATTAA
1 -TTAATATTAA
65948 ATTGATAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
24 5 0.09
25 11 0.20
26 3 0.05
27 7 0.13
28 9 0.16
29 15 0.27
30 5 0.09
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.46
Consensus pattern (28 bp):
TTAATATTAATATTAATATTAATATAAT
Found at i:65906 original size:7 final size:6
Alignment explanation
Indices: 65855--65907 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
65845 TGTTATAAAT
*
65855 TATTAA AATT-A TATTAA TATTAA TA-TAA T-TTAA GTATTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA TATTAA
65901 TGATTAA
1 T-ATTAA
65908 ATAACTTGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 11 0.28
6 20 0.50
7 9 0.22
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (6 bp):
TATTAA
Found at i:65968 original size:25 final size:25
Alignment explanation
Indices: 65863--65950 Score: 76
Period size: 25 Copynumber: 3.5 Consensus size: 25
65853 ATTATTAAAA
* *
65863 TTATATTAATATTAATATAATTTAAGTA
1 TTATATTAA-ATTAAT-TAATATAA-TC
*
65891 TTAATATT-AA-TGATTAA-ATAA-C
1 TT-ATATTAAATTAATTAATATAATC
65913 TTGATATTAAATTAATTAATATAATC
1 TT-ATATTAAATTAATTAATATAATC
65939 TTATATTAAATT
1 TTATATTAAATT
65951 GATAATACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
22 7 0.14
23 2 0.04
24 9 0.18
25 17 0.34
26 6 0.12
27 1 0.02
28 3 0.06
29 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (25 bp):
TTATATTAAATTAATTAATATAATC
Found at i:67148 original size:180 final size:178
Alignment explanation
Indices: 66805--67309 Score: 476
Period size: 180 Copynumber: 2.8 Consensus size: 178
66795 TGACTATTTC
* * * *
66805 AATAATTATTTATTTCAAATCATTATAACCTTTTATTTTATCATCAAACAATTGGTTCTGTTCAT
1 AATAATTATCTATTTCAAATCATTATGACC-TTT-TTTTATCATAAAACAATT-GTTTTGTTCAT
* ** ** * ** *
66870 ACTATTTTATTTAGAATAAAATAATTTTAATTTAATAATATTTTGAAACTTAATAACCAAGAAAA
63 ACAAGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGAAAGAAAT
** *
66935 TTAAAAAATAAATGTAATTGTTGAACTAGTTCAAATAATTAAGACTCTA-T-G
128 TTAAAAAATAAATGTAATTACTGAACTAGTTCAAATAATTAA-AAT-TATTAG
* * * *
66986 AATGATTATCTATTTCAAATCATTATGACCTTGTCTTTTAACATAAAAAAATTGTTTTGTTCGTA
1 AATAATTATCTATTTCAAATCATTATGACCTT-T-TTTTATCATAAAACAATTGTTTTGTTCATA
* * * * * *
67051 CAAGCTTATTTGGATTAAAACAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATT
64 CAAGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGAAAGAAATT
* ** **
67116 TAAAAAATAAATTTCTTTACTGAA-TCAGTTCAAATGGTTAAAATTATTAG
129 TAAAAAATAAATGTAATTACTGAACT-AGTTCAAATAATTAAAATTATTAG
* * * * *
67166 AATAATTATCTATTTCATATCATTTTGATCTTTTGTTTAGTCATAAAACAATTATTTCAGTTCAT
1 AATAATTATCTATTTCAAATCATTATGACCTTTT-TTTA-TCATAAAACAATTGTTT-TGTTCAT
* * * * * * * * *
67231 ATAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATTTGGAAAACTAATATGAAAGACAT
63 ACAAGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGAAAGAAAT
67296 TTAAAAAAATAAAT
128 TT-AAAAAATAAAT
67310 CTGTTTACCG
Statistics
Matches: 262, Mismatches: 54, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
178 3 0.01
179 9 0.03
180 138 0.53
181 101 0.39
182 11 0.04
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (178 bp):
AATAATTATCTATTTCAAATCATTATGACCTTTTTTTATCATAAAACAATTGTTTTGTTCATACA
AGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGAAAGAAATTTA
AAAAATAAATGTAATTACTGAACTAGTTCAAATAATTAAAATTATTAG
Found at i:67405 original size:16 final size:17
Alignment explanation
Indices: 67373--67408 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
67363 AATCAGTTCA
67373 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
67391 AATAATTAT-CTATTTC
1 AATAATTATGCTATTTC
67407 AA
1 AA
67409 ATTGTTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:67641 original size:181 final size:180
Alignment explanation
Indices: 67332--68643 Score: 1071
Period size: 181 Copynumber: 7.3 Consensus size: 180
67322 CAAATTCAAA
* * * * * * * ** *
67332 TAAGTGATTTAAAAAGTGAATATGTTTACTAAATCAGTTCAAATAATTATGGCTATTTCAATAAT
1 TAAGAGATTTAAAAAATAAATATGTTTACTGAA-CAATTCAAATAGTTATGACTATTAGAACAAT
* * * * * ** * * *
67397 TATCTATTTCAAATTGTTCTTACCTTTTGTTTGGTTATATGACAATTGTTTTTAATCATACAAGC
65 TATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGC
* *
67462 TTATTTGGAATAAAATCATATTAATTTATTAATCTTTCAAAAATTAATAAG
130 TTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* * ** *
67513 TAAGAGATTTAAAAAATAAATCTATTTACAAAACCAATTCAAATAGTTATGACTATTAGAGCAAT
1 TAAGAGATTTAAAAAATAAATATGTTTACTGAA-CAATTCAAATAGTTATGACTATTAGAACAAT
* * * *
67578 TGTATACTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGC
65 TATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGC
* * * * * *
67643 TTATTTGAAATAAAATAAAACTAATCTAATAATA-TTCTAAAAATTAATAAC
130 TTATTTGGAATAAAATAATATTAATTTATTAATATTTC-AAAAATTAATAAG
* * * ** *
67694 TAAGAGATTTAAAAAATAAA-ATTGTTTGCCGAACTAGTTCAAATAGTTAAAACTA-TATGAATA
1 TAAGAGATTTAAAAAATAAATA-TGTTTACTGAAC-AATTCAAATAGTTATGACTATTA-GAACA
* * *
67757 ATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCAATTCATACC
63 ATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTA-TTTCTATTCATACA
* * * * *
67821 AGCTTATTTAGAATAAAATAAAATAAATTTATTAAAATTTCAAAAATTAATAAA
127 AGCTTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * ** *
67875 TAAGAGAATTAAAAAATAATTTTGTTTACCTAAACAGTTCAAATAAATATGACTATTTGAACAAT
1 TAAGAGATTTAAAAAATAAATATGTTTA-CTGAACAATTCAAATAGTTATGACTATTAGAACAAT
* * * *
67940 TATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGT-TTTC-GTTCATATAA
65 TATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAAC-AAT-TATTTCTATTCATACAA
* * *** * *
68003 GTTTGTTCAAAATAAAATAATACTAATCTATTAATATTTCAAAAATTAATAA-
128 GCTTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* * ** * *
68055 -AA-A-TTTTAAAAAATAAATATGTTTA-TCAAACTGTTC-AA-A-TTAAGACTATTTA-AGCAA
1 TAAGAGATTTAAAAAATAAATATGTTTACT-GAACAATTCAAATAGTTATGACTA-TTAGAACAA
* * * * * * * * *
68112 TTATTTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAGATAA-TAGTTTCTATTTATTCAA
64 TTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTA-TTTCTATTCATACAA
* * ** ** *
68176 GCTTATTCGGATTAAAATAATACAAATTTATTAATATTTTGACAATTAATAAG
128 GCTTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * * *
68229 TAAAAAATGTAAAAAATTAAATATTTTTACTGAACTAGA-TCAAACAGTTATGATTATTTGAATA
1 TAAGAGATTTAAAAAA-TAAATATGTTTACTGAAC-A-ATTCAAATAGTTATGACTATTAGAACA
* * * * *
68293 ATTATCTATTTCAAATCGTTATAACCTTTTCTTCTGTCATAAAAAAATTATTTCAATTCATATAA
63 ATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAA
* * * * ** *
68358 GCTTATTCGAAATAAAATAATATTAAGTGATTAATATTTTGAAAATTAATAAT
128 GCTTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * * *
68411 TAAGAGATTTACAAAATGAATTTGTTTACTGAACAAGTTTAAATAATTATAATTATTTGAACAAT
1 TAAGAGATTTAAAAAATAAATATGTTTACTGAACAA-TTCAAATAGTTATGACTATTAGAACAAT
* ** * * ** * * *
68476 TATTTATTGGAAATCATTATAACCTTTTGCTTTGTCATAAAATGATTTTTTTTGTTCATACAAGC
65 TATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGC
* * * *
68541 TTATTTTGAATAAAATAATATAAATTTATTAA-ATTAT-GACAATTAATAAG
130 TTATTTGGAATAAAATAATATTAATTTATTAATATT-TCAAAAATTAATAAG
* * * *
68591 TAAAAGATTT-AAAAATAAATCTATTTACTGAACAAGTTCAAATCGTTATGACT
1 TAAGAGATTTAAAAAATAAATATGTTTACTGAACAA-TTCAAATAGTTATGACT
68644 TTTTGTTTGT
Statistics
Matches: 906, Mismatches: 192, Indels: 68
0.78 0.16 0.06
Matches are distributed among these distances:
170 1 0.00
172 6 0.01
173 96 0.11
174 3 0.00
175 5 0.01
176 9 0.01
177 26 0.03
178 15 0.02
179 40 0.04
180 34 0.04
181 539 0.59
182 129 0.14
183 2 0.00
184 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
TAAGAGATTTAAAAAATAAATATGTTTACTGAACAATTCAAATAGTTATGACTATTAGAACAATT
ATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCT
TATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
Found at i:68697 original size:142 final size:146
Alignment explanation
Indices: 68486--68792 Score: 381
Period size: 144 Copynumber: 2.1 Consensus size: 146
68476 TATTTATTGG
* * * ** * ***
68486 AAATCATTATAACCTTTTGCTTTGTCATAAAATGATTTTTTTTGTTCATACAAGCTTATTTTGAA
1 AAATCGTTATGACTTTTTGCTTTGTCATAAAACAATTATTTTTGTTCATACAAGCTTATTCAAAA
*
68551 TAAAATAATATAAATTTA-TTAAATTAT-GACAATTAATAAGTAAAAGATTT-AAAAATAAATCT
66 TAAAATAATATAAATTTATTTAAATT-TCGACAATTAATAAGTAAAAGATTTAAAAAATAAATAT
*
68613 ATTTACTGAACAAGTTC
130 ATTTACCGAACAAGTTC
*
68630 AAATCGTTATGACTTTTTG-TTTGTCATAAAACAATTATTTTT-TTCATACTAGCTTATTCAAAA
1 AAATCGTTATGACTTTTTGCTTTGTCATAAAACAATTATTTTTGTTCATACAAGCTTATTCAAAA
* * * * *
68693 TAAAATAATATTAATTTATTTATATTTCGACAATTTATATGTAAAAGATTTAAAAAATAAATATG
66 TAAAATAATATAAATTTATTTAAATTTCGACAATTAATAAGTAAAAGATTTAAAAAATAAATATA
*
68758 TTTGCCGAACAAGTTC
131 TTTACCGAACAAGTTC
* * *
68774 AAATAGTCATGACTATTTG
1 AAATCGTTATGACTTTTTG
68793 AATAATAATC
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
142 35 0.25
143 47 0.34
144 57 0.41
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (146 bp):
AAATCGTTATGACTTTTTGCTTTGTCATAAAACAATTATTTTTGTTCATACAAGCTTATTCAAAA
TAAAATAATATAAATTTATTTAAATTTCGACAATTAATAAGTAAAAGATTTAAAAAATAAATATA
TTTACCGAACAAGTTC
Found at i:69555 original size:181 final size:180
Alignment explanation
Indices: 68937--70446 Score: 1248
Period size: 180 Copynumber: 8.4 Consensus size: 180
68927 TTATCAATCA
* * * * *
68937 AGTTGAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTAT-AACATTTTGTTTTG
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCA-TTTGTTTTG
* * ** * ** * *
69001 TCATAAAACAATTGGTTCTATTCATGCAAGCACATTTTGAATAAAATAATAAAAATTTAATAATA
65 TCAT-AAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* * *
69066 TTCTAAAAATTAATAAGTAT-AA-TTTTAGAAAATAAAGCTA-TTT-TCTGAAC-
129 TTCTAAAAATTAATAAGT-TGAAGATTTAAAAAATAAA-TTAGTTTATC-GAACT
* * * *
69116 ACATTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATTAGTATGACCATTTGTTTTG
1 A-GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTG
* * * * * * *
69181 TTATAAACCAATTGTTTCTGTTCAAACATGCTTATTTGGAATAAAATAATTCTAATTAATTAATA
65 TCATAAA-CAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* ** * * *
69246 TTC-CAAAATTAATAAGTAAAAGATTT-TAAAATAAATTTGTTTA-CTG-AGT
129 TTCTAAAAATTAATAAGTTGAAGATTTAAAAAATAAATTAGTTTATC-GAACT
* * * * *
69295 GAGTTCAAATAGTTATGATTGTTTGAACAATTATATATTTCAAATCATTATGATCTTTTGTTTTG
1 -AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTG
* * * **
69360 TTATAAAATAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAAGATATTAACA
65 TCAT-AAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* *
69425 TTCTTAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAGTTTATCGAACT
129 TTCTAAAAATTAATAAGTTGAAGATTTAAAAAATAAATTAGTTTATCGAACT
* * * * * *
69477 AGTTCAAATAGTCATGTCCATCTGAACTATTATCTATTTCAAATCATTATGACCATTTGTTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
* * ** * *
69542 CATAAACTAATTGTTTCTATTCA-AGCAAGCTTATTTGGCATAAAATGATTGTAATTAATTAATA
66 CATAAAC-AATTGTTTCTATTCATA-CAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* ** * *
69606 TTC-CAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTA-TTTACCG-AGT
129 TTCTAAAAATTAATAAGTTGAAGATTTAAAAAATAAA-TTAGTTTATCGAACT
* * * * ** * *
69656 GAGTTTAAATAGTTATGATTGTTTGAACAATTATTTATTTCAAATTGTTATGATCTTTTGTTTTG
1 -AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTG
* * * *
69721 TTATAAAACAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATGCTAATATATTAACA
65 TCAT-AAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* ** * *
69786 TTCTAAAAATTAATAAGTTGAAGATTTAAAGAATTGATTAGTTTATTGAACC
129 TTCTAAAAATTAATAAGTTGAAGATTTAAAAAATAAATTAGTTTATCGAACT
* * * * ** * *
69838 AGTTTC-AATAGTCATGTCCATTTGAACTATTATCTATTTCAAATTGTTATGA-TATTTTATTTT
1 AG-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCA-TTTGTTTT
** * **
69901 GTTGTAAAACAATTGTTTCTATTCATACACA-ATTATTTATAATAAAATAATACTAATTTATT-A
64 GTCAT-AAACAATTGTTTCTATTCATACA-AGCTTATTTGGAATAAAATAATACTAATTTATTAA
* * *
69964 CTATT-TCAAAAATTAATAA---G-AGATTTAAAAACTAAATCT-CTTTACCGAACT
127 C-ATTCT-AAAAATTAATAAGTTGAAGATTTAAAAAATAAAT-TAGTTTATCGAACT
** * * * * * *
70015 AGTTTGAATAGTTATAACTATTTAAACAATTATCTATCTCAAATCGTTATGAAC-TTTGTTTTGG
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
* * * ** * * * * * *
70079 CCTAAAACATTTGTTTCTGTTCATACAAGCTTATTCAGAGTAAAATATTGCTAAGTTAATAATAT
66 CAT-AAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACAT
** * ** *
70144 TCTAAAAATTAATAAG-T-AAGGATTTGGAAAATAAATGT-GTTT-GCTGGTCC
130 TCTAAAAATTAATAAGTTGAA-GATTTAAAAAATAAAT-TAGTTTATC-GAACT
* * * * * *
70194 AGTTCAAATAGTTAAGACTATTAGAACAATTATCTATTTCAAATCATTCTAACCTTTTGTTTAGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
* * ***
70259 CATAAAATAATTGTTTC-ATTTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACA
66 CAT-AAACAATTGTTTCTA-TTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACA
* * *
70323 TTCAAAAAATTAATAAGTAAGAA-ATTTTAAAAAATAAATTTA-TTTATCGAACA
129 TTCTAAAAATTAATAAGT-TGAAGA-TTTAAAAAATAAA-TTAGTTTATCGAACT
* * * * * *
70376 AGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATCATTATGACCTTTTATTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
70441 CATAAA
66 CATAAA
70447 AGCTTGTCCT
Statistics
Matches: 1064, Mismatches: 219, Indels: 94
0.77 0.16 0.07
Matches are distributed among these distances:
175 1 0.00
176 71 0.07
177 63 0.06
178 6 0.01
179 205 0.19
180 349 0.33
181 283 0.27
182 82 0.08
183 4 0.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (180 bp):
AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
CATAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATT
CTAAAAATTAATAAGTTGAAGATTTAAAAAATAAATTAGTTTATCGAACT
Found at i:69783 original size:361 final size:360
Alignment explanation
Indices: 68937--71050 Score: 1578
Period size: 361 Copynumber: 6.0 Consensus size: 360
68927 TTATCAATCA
* * * *
68937 AGTTGAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTAT-AACATTTTGTTTTG
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTG
* * ** * ** * *
69001 TCATAAAACAATTGGTTCTATTCATGCAAGCACATTTTGAATAAAATAATAAAAATTTAATAATA
65 TCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAACA
* * *
69066 TTCTAAAAATTAATAAGTATAA-TTTTAGAAAATAAAGCTA-TTTTCTGAACACA-TTCAAATAG
130 TTCTAAAAATTAATAAGT-TAAGATTTAAAAAATAAA-TTAGTTTTCTGAAC-CAGTTCAAATAG
* * * * * * *
69128 TTATGACTATTTGAA-TAATTATCTATTTCAAATTAGTATGACCATTTGTTTTGTTATAAACCAA
192 TCATGACCATTTGAACT-ATTATCTATTTCAAATCATTATGACCATTTGTTTTATCATAAACTAA
* * * * * *
69192 TTGTTTCTGTTCAAACATGCTTATTTGGAATAAAATAATTCTAATTAATTAATATTCCAAAATTA
256 TTGTTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTAATTAATATTCAAAAATTA
* * *
69257 ATAAGTAAAAGATTT-TAAAATAAATTTGTTTACTGAGTG
321 ATAAGTAAAAGATTTAAAAAATAAATTTATTTACCGAGTG
* * * *
69296 AGTTCAAATAGTTATGATTGTTTGAACAATTATATATTTCAAATCATTATGATCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGT
* * * * *
69361 TATAAAATAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAAGATATTAACAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAACAT
* * *
69426 TCTTAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAGTTTATC-GAACTAGTTCAAATAGTC
131 TCTAAAAATTAATAAGTT-AAGATTTAAAAAATAAATTAGTTT-TCTGAACCAGTTCAAATAGTC
* *
69490 ATGTCCATCTGAACTATTATCTATTTCAAATCATTATGACCATTTGTTTTATCATAAACTAATTG
194 ATGACCATTTGAACTATTATCTATTTCAAATCATTATGACCATTTGTTTTATCATAAACTAATTG
* * * ** *
69555 TTTCTATTCA-AGCAAGCTTATTTGGCATAAAATGATTGTAATTAATTAATATTCCAAAATTAAT
259 TTTCTATTCATA-CAAGCTTATTTAGAATAAAATAATACTAATTAATTAATATTCAAAAATTAAT
69619 AAGTAAAAGATTTAAAAAATAAATTTATTTACCGAGTG
323 AAGTAAAAGATTTAAAAAATAAATTTATTTACCGAGTG
* * * * ** *
69657 AGTTTAAATAGTTATGATTGTTTGAACAATTATTTATTTCAAATTGTTATGATCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGT
* * * *
69722 TATAAAACAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATGCTAATATATTAACAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAACAT
* **
69787 TCTAAAAATTAATAAGTTGAAGATTTAAAGAATTGATTAGTTTAT-TGAACCAGTTTC-AATAGT
131 TCTAAAAATTAATAAGTT-AAGATTTAAAAAATAAATTAGTTT-TCTGAACCAG-TTCAAATAGT
* ** * * * **
69850 CATGTCCATTTGAACTATTATCTATTTCAAATTGTTATGA-TATTTTATTTTGTTGTAAAAC-AA
193 CATGACCATTTGAACTATTATCTATTTCAAATCATTATGACCA-TTTGTTTTATCAT-AAACTAA
* * * *
69913 TTGTTTCTATTCATACACA-ATTATTTATAATAAAATAATACTAATTTATTACTATTTCAAAAAT
256 TTGTTTCTATTCATACA-AGCTTATTTAGAATAAAATAATACTAATTAATTAATA-TTCAAAAAT
* * * *
69977 TAATAAG----AGATTTAAAAACTAAATCTCTTTACCGAACT-
319 TAATAAGTAAAAGATTTAAAAAATAAATTTATTTACCG-AGTG
** * * * * *
70015 AGTTTGAATAGTTATAACTATTTAAACAATTATCTATCTCAAATCGTTATGAAC-TTTGTTTTGG
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGT
* * * ** * * * *
70079 CCTAAAACATTTGTTTCTGTTCATACAAGCTTATTCAGAGTAAAATATTGCTAAGT-TAATAATA
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAA-TATAATAACA
** * **
70143 TTCTAAAAATTAATAAG-TAAGGATTTGGAAAATAAATGT-GTTTGCTGGTCCAGTTCAAATAGT
130 TTCTAAAAATTAATAAGTTAA-GATTTAAAAAATAAAT-TAGTTTTCTGAACCAGTTCAAATAGT
* * * * * * * * *
70206 TAAGACTATTAGAACAATTATCTATTTCAAATCATTCTAACCTTTTG-TTTAGTCATAAAATAAT
193 CATGACCATTTGAACTATTATCTATTTCAAATCATTATGACCATTTGTTTTA-TCATAAACTAAT
* * * * *
70270 TGTTTC-ATTTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATT
257 TGTTTCTA-TTCATACAAGCTTATTTAGAATAAAATAATACTAATTAATTAATATTC-AAAAATT
* ***
70334 AATAAGTAAGAA-ATTTTAAAAAATAAATTTATTTATCGAACA
320 AATAAGTAA-AAGA-TTTAAAAAATAAATTTATTTACCGAGTG
* * * * * *
70376 AGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATCATTATGACCTTTTATTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGT
* * * *
70441 CATAAAAGC--TTG--TC----C-TA-AA---TA-----AA-ATAATATTACT--T-TATTAATA
66 CATAAAA-CAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAACA
* * * * * * * *
70484 TTTTAAAAATTGATAAGTTAAAGATTTAAAACATAAATCAATTTATC-GAATCAGTTAAAATAAT
130 TTCTAAAAATTAATAAGTT-AAGATTTAAAAAATAAATTAGTTT-TCTGAACCAGTTCAAATAGT
* * * * *
70548 TATGGCCATTTGAAC-ATTTATCTA-TTCAAATCATTATGAACTTTTGCTTTGA-CATAAAAC-A
193 CATGACCATTTGAACTA-TTATCTATTTCAAATCATTATGACCATTTG-TTTTATCAT-AAACTA
* * * * * *
70609 ATTGTTTTTCA-TCAGACTAGCTTA-TTCGTAATAAAATAATATTAATTTATTAATATTTCAAAA
255 ATTGTTTCT-ATTCATACAAGCTTATTTAG-AATAAAATAATACTAATTAATTAATA-TTCAAAA
* * * ***
70672 ATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACC
317 ATTAATAAGTAAAAGATTTAAAAAATAAATTTATTTACCGAGTG
* * * *
70716 AATTCAAATAGTTATGACTATTTG---TATT-TC-AATT----TC-TTAT-AACTTTTTGTTCCT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTT-TT
* * ** * *
70770 -TCATAAAACAATTATTTCTATTCATACAAGTTTATTCAGAATAAAATAATACTAATGTAATAAT
64 GTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAAC
* * * * ** * *
70834 ATTCTGAAAATTAATAACTAATAGATTTAAAAAATAAATTTGTTAGCTAAACTAGTTCAAATAGT
129 ATTCTAAAAATTAATAAGTTA-AGATTTAAAAAATAAATTAGTTTTCTGAACCAGTTCAAATAGT
* * * * *** * * * * ** * *
70899 TAAGGCTACAGGAACAATTCTTTATTTTAAATTGTTATGA-CATTTTGTTTTATCGTAAAATAAT
193 CATGACCATTTGAACTATTATCTATTTCAAATCATTATGACCA-TTTGTTTTATCATAAACTAAT
* * ** * * ** *
70963 TTTTTCAATTTTTACTAA-CTTATTCAAAATAAAATAA-AAAAATTTATTAATATTTCAAAAATT
257 TGTTTCTATTCATAC-AAGCTTATTTAGAATAAAATAATACTAATTAATTAATA-TTCAAAAATT
* *
71026 AATCAA-TAAGAGATTTAATAAATAA
320 AAT-AAGTAAAAGATTTAAAAAATAA
71051 TTTTGTTTGC
Statistics
Matches: 1426, Mismatches: 244, Indels: 178
0.77 0.13 0.10
Matches are distributed among these distances:
329 3 0.00
330 18 0.01
331 5 0.00
333 2 0.00
335 3 0.00
336 1 0.00
337 4 0.00
338 2 0.00
339 2 0.00
340 49 0.03
341 105 0.07
342 55 0.04
343 7 0.00
344 9 0.01
345 1 0.00
347 2 0.00
348 9 0.01
350 5 0.00
351 120 0.08
352 45 0.03
353 4 0.00
354 2 0.00
355 16 0.01
356 123 0.09
357 78 0.05
358 71 0.05
359 131 0.09
360 158 0.11
361 358 0.25
362 37 0.03
363 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (360 bp):
AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGT
CATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATATAATAACAT
TCTAAAAATTAATAAGTTAAGATTTAAAAAATAAATTAGTTTTCTGAACCAGTTCAAATAGTCAT
GACCATTTGAACTATTATCTATTTCAAATCATTATGACCATTTGTTTTATCATAAACTAATTGTT
TCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTAATTAATATTCAAAAATTAATAAG
TAAAAGATTTAAAAAATAAATTTATTTACCGAGTG
Found at i:79470 original size:180 final size:181
Alignment explanation
Indices: 79095--79941 Score: 644
Period size: 181 Copynumber: 4.7 Consensus size: 181
79085 TTTTTAGTAA
* * ** ** * *
79095 CTTATTTAGAATAAAATAAAACAAATTTATTAATATTTAAAAAATTAATAAGTATGAGATTTAAA
1 CTTATTCAGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAGATTTAAA
* * * * * * * *
79160 AAATAATTTTGGTTT-GTCAAACCAGTTAAAATAATTATGATTATTTGAACAATTATCTATTTCA
66 AAATAAATCT-GTTTACT-AAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCA
* * * * *
79224 AATCGTTATGACTTTTTCTTTTGTCATAAAACAAATGTTTTTGTTCATATAAAT
129 AATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATA-AAGT
* * * *
79278 -TTGTTTAGAATAAAATAATATTAATCTATTCAT-TTTTGAAAATTAAGAAGTAAGAGATTTAAA
1 CTTATTCAGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAGATTTAAA
* * ** * * *
79341 AAACAAATCTGTTTACTAAACCAGTTCAGTTAGTTATAACTATTTAAACAATTCTTTATTTCAAA
66 AAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAA
* * *
79406 TCATTATGACCATTTATTTTGTCATAAAATAATTGTTTTTGTTCATACAGT
131 TCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATAAAGT
* ** * * * *
79457 CTTATTCAGAATAAAGTAATGCTAATGTATTAATATTTTGAAAATTCATAAGTAACG-GACTTAA
1 CTTATTCAGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAA-GAGATTTAA
* * * * * * *
79521 AAAATGAATCTGTTGACCTGACCAA-TGT-AAATAGTTATGACTGTTTGAATAATTATCTATTTC
65 AAAATAAATCTGTTTA-CTAAACAAGT-TCAAATAGTTATAACTATTTGAACAATTATCTATTTC
* * * ** *
79584 AAAT-AGTTATGACCTTTTGTTTTATCACAAAGTAATTGTTTCTGTTCATAAAAG-
128 AAATCA-TTATGACCTTTTATTTTGTCATAAAACAATTGTTTTTGTTCAT-AAAGT
* * * *
79638 CTTATT-TGAAATAACATAA-ATCTAATTTATTAATATTCTT-AAAA-CAATG-AGTACGAGATT
1 CTTATTCAG-AATAAAATAATAT-TAATTTATTAATATT-TTGAAAATTAA-GAAGTAAGAGATT
* * * * *
79698 TAAAAAATGAAA-CTATTT-TTCAAACAAGTTCAAAGAGTTATGATTATTTGAAC----A---AT
62 TAAAAAAT-AAATCTGTTTACT-AAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTAT
** * *
79754 TTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATT-TTTTCTACTCATACAGG
125 TTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTT-TGTTCATAAAGT
* * * * * * * *
79811 CATATTTCA-AATAAAATTATATGAATTTATTAATATTTAGACATTTAATAAGTAAAAGATTTAA
1 CTTA-TTCAGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAGATTT-A
* * * * *
79875 AAAAATAAATTTGTTTACCAAATAAGTTCAAATAGTCATAACTATTTGAACAATTATTTATTTCA
64 AAAAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCA
79940 AA
129 AA
79942 CTATTATTGT
Statistics
Matches: 515, Mismatches: 113, Indels: 73
0.73 0.16 0.10
Matches are distributed among these distances:
172 7 0.01
173 67 0.13
174 20 0.04
175 38 0.07
176 1 0.00
178 1 0.00
179 9 0.02
180 151 0.29
181 174 0.34
182 47 0.09
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (181 bp):
CTTATTCAGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAGATTTAAA
AAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAA
TCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATAAAGT
Found at i:80744 original size:53 final size:54
Alignment explanation
Indices: 80683--80799 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
80673 TTTGCCTTAC
*
80683 CTGATCGATCCCTTTTATGGGTTTTCAAAC-TGGGAAACATTTTGTCTGAGCAA
1 CTGATCGATCCCTTTTATGGGTTTTCAAACTTGGGAAACATTCTGTCTGAGCAA
* * *
80736 CTGATCGATCCCTTTTCTGGGTTTTCGAACTTGGGAAACATTCTGTTTGAGCAA
1 CTGATCGATCCCTTTTATGGGTTTTCAAACTTGGGAAACATTCTGTCTGAGCAA
* *
80790 CCGATTGATC
1 CTGATCGATC
80800 TCTTGCCTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 28 0.49
54 29 0.51
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGATCGATCCCTTTTATGGGTTTTCAAACTTGGGAAACATTCTGTCTGAGCAA
Found at i:81803 original size:12 final size:11
Alignment explanation
Indices: 81786--81824 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
81776 TATTCAGAAT
81786 ATTAATTATTA
1 ATTAATTATTA
*
81797 GATTAATTATAAA
1 -ATTAATTAT-TA
81810 ATTAATTATTA
1 ATTAATTATTA
81821 ATTA
1 ATTA
81825 TATAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.21
12 18 0.75
13 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (11 bp):
ATTAATTATTA
Found at i:82810 original size:18 final size:19
Alignment explanation
Indices: 82782--82842 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
82772 TATTAATAAC
*
82782 ATTAGTAATTATAAATATT
1 ATTATTAATTATAAATATT
82801 ATT-TTAATTAATAATAATATAT
1 ATTATTAATT-AT-A-AATAT-T
82823 ATTGATTAATTA-AAATATT
1 ATT-ATTAATTATAAATATT
82842 A
1 A
82843 AAAAATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
18 5 0.14
19 7 0.20
20 6 0.17
21 6 0.17
22 4 0.11
23 1 0.03
24 6 0.17
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (19 bp):
ATTATTAATTATAAATATT
Found at i:83019 original size:19 final size:19
Alignment explanation
Indices: 82995--83031 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82985 CCAAGTATCG
*
82995 TAATAAAATTATAATATTA
1 TAATAAAAATATAATATTA
*
83014 TAATAAAAATATTATATT
1 TAATAAAAATATAATATT
83032 GTTTAATTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAAAAATATAATATTA
Found at i:83516 original size:181 final size:180
Alignment explanation
Indices: 83304--83957 Score: 766
Period size: 181 Copynumber: 3.6 Consensus size: 180
83294 ATAAGCATAC
* *
83304 TTCGAATAAAATAATACAAATTTATTAATA-TTAAGACAATTAATAAGTAAAAAATTTAAAAAGT
1 TTCGAATAAAATAATACTAATTTATTAATATTTAA-ACAATTAATAAGTAAAAAATTTAAAAAAT
*
83368 AAATCTATTTATCGAACAAATTCAAATCGTTATGACTATCTGAATAATTATTTATTTCAAATTCT
65 AAATCTATTTATCGAACAAATTCAAATAGTTATGACTATCTGAATAATTATTTATTTCAAATTCT
83433 TATGACTTTTTTGTTTTGTCATAAAACAATTGTTTTCGTCTATACGAGCTTA
130 TATGACTTTTTTGTTTTGTCATAAAACAATTG-TTTCGTCTATACGAGCTTA
* * * * *
83485 TTCGATTAAAATAATATTGATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAAATA
1 TTCGAATAAAATAATACTAATTTATTAATATTTAAACAATTAATAAGTAAAAAATTTAAAAAATA
*
83550 AATCTATTTATCGAACAAATTCAAATCGTTATGACTATCTGAATAATTATTTATTTCAAATTCTT
66 AATCTATTTATCGAACAAATTCAAATAGTTATGACTATCTGAATAATTATTTATTTCAAATTCTT
*
83615 ATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCGTCCATACGAGCTTA
131 ATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCGTCTATACGAGCTTA
* * * * ***
83665 TTCAGATTAAAATAATATTGATTTATTAATATTTCAACAATTAATAAGTAAAAAATTTTTTAAA-
1 TTC-GAATAAAATAATACTAATTTATTAATATTTAAACAATTAATAAGTAAAAAATTTAAAAAAT
* * * * * * * *
83729 AAAT-AAGTTTA-CCAAAAAAGTTCAAATAGTCATGATTATTTGAATAATTATCTACTTCAAA-T
65 AAATCTA-TTTATCGAACAAA-TTCAAATAGTTATGACTATCTGAATAATTATTTATTTCAAATT
* * * * * ***
83791 CATTGTAAC-ATTTTGTTTTGTAATAAAACAATTGTTTCAAT-TCATGTTAGCTTA
128 C-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTC-GTCT-ATACGAGCTTA
* * * * * *
83845 TTTGAAATAAAATAATACTAATTTATTGATATTCCAAA-AATTAAAAAGTAAGAGAATTAAAAAA
1 TTCG-AATAAAATAATACTAATTTATTAATATT-TAAACAATTAATAAGTAA-AAAATTTAAAAA
* * * *
83909 ATAAATTTGTTTATCGAACAAGTTCAAATAGTTATGACTATCTTAATAA
63 ATAAATCTATTTATCGAACAAATTCAAATAGTTATGACTATCTGAATAA
83958 GAGAATTAAA
Statistics
Matches: 408, Mismatches: 52, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
179 37 0.09
180 116 0.28
181 216 0.53
182 34 0.08
183 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
TTCGAATAAAATAATACTAATTTATTAATATTTAAACAATTAATAAGTAAAAAATTTAAAAAATA
AATCTATTTATCGAACAAATTCAAATAGTTATGACTATCTGAATAATTATTTATTTCAAATTCTT
ATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCGTCTATACGAGCTTA
Found at i:83967 original size:62 final size:62
Alignment explanation
Indices: 83893--84019 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
83883 AATTAAAAAG
*
83893 TAAGAGAATTAAAAAAATAAATTTGTTTATCGAACAAGTTCAAATAGTTATGACTATCTTAA
1 TAAGAGAATTAAAAAAATAAATTTGTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAA
83955 TAAGAGAATTAAAAAAATAAATTTGTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAA
1 TAAGAGAATTAAAAAAATAAATTTGTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAA
84017 TAA
1 TAA
84020 TTATCTATTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (62 bp):
TAAGAGAATTAAAAAAATAAATTTGTTTATCAAACAAGTTCAAATAGTTATGACTATCTTAA
Found at i:84938 original size:181 final size:180
Alignment explanation
Indices: 84206--85245 Score: 843
Period size: 181 Copynumber: 5.8 Consensus size: 180
84196 TTGTACAAAA
* * ** *
84206 TTATTCAGAATAAAATAATACTATTTTATTACTATT-TTGAAA--ACTAA-TAAGAGATTTAAAA
1 TTATTCAGAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAA
* * * * * *
84267 ACTAAATCTCTTTATTGAACCAATTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAAT
66 A-TAAATCTGTTTACTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATCTAT-TTCAAA
* * * * * **
84332 TGA-TATG-ATTTTTGTTTTGTCCTAAAACATTTAATTTTTGTTCA-ACAAGC
129 TCATTATGAACTTTTGTTTTGTCATAAAACAATT-ATGTTTCATCATACAAGC
* ** * * * *
84382 TTATTCAGAGTAAAAT-ATTGTGAAATTAATAATATTCTAAACATTAATAAGTAAG-GATTTAAA
1 TTATTCAGAATAAAATAATACT-AATTTATTAATATTATAAAAATTAATAAGTAAGAGATTT-AA
* * * *
84445 AAATAAATGTGTTTGCTGAATCAGTTCAAATAGTTAAGACTA-TTAGAACAATTATCTATTTCAA
64 AAATAAATCTGTTTACTGAATCAATTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAA
* * * * * * *
84509 ATCGTTTTGACCTTTTGTTTAGTCATAAAATAA-T-TGCTTCAACTCATACATGC
128 ATCATTATGAACTTTTGTTTTGTCATAAAACAATTATGTTTC-A-TCATACAAGC
* * * *
84562 TTATT-TGAAATAAAATAATACTAATTTATTAACATTCA-AAAAATTATTAAGTAAGA-AATTAA
1 TTATTCAG-AATAAAATAATACTAATTTATTAATATT-ATAAAAATTAATAAGTAAGAGATTTAA
* * * * * * * * *
84624 AAAAAAATCTATTTACCGAA-CAAGTTCAAATATTTTTAACTATTTGAACAATTATATATTTAAA
64 AAATAAATCTGTTTACTGAATCAA-TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAA
* * * * * *
84688 ATCGTTATGACCTTATATTTTATCATAAAACAA-T-TGTTTCAGTTCATAAAAGC
128 ATCATTATGAACTTTTGTTTTGTCATAAAACAATTATGTTTCA--TCATACAAGC
* * * * *
84741 TTA-TCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAA
1 TTATTCAG-AATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAA
* * * * *
84805 ACATAAATCAGTTTATTGAATCAATTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAA
65 A-ATAAATCTGTTTACTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAA
* * *
84870 TCATTATGAACTTTTGTTTTGCCATAAAATAATTATTTTTCATCATACAAGC
129 TCATTATGAACTTTTGTTTTGTCATAAAACAATTATGTTTCATCATACAAGC
* *
84922 CTATTCAGAGTAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAAGT-AGAAGATTTAA
1 TTATTCAGAATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAGTAAG-AGATTT-A
* * ** *
84985 AAAATAAATCTGTTTA-TAGAATCAGTTCAAATAGTTATGACTGTTTAAACAATTATAGATTTCC
63 AAAATAAATCTGTTTACT-GAATCAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCA
** * * * * *
85049 AATTGTTAT-AGCTTTTTGTTTTGTCATAAAACAATTATATATCTTCATACAAAC
127 AATCATTATGAAC-TTTTGTTTTGTCATAAAACAATTATGTTTCATCATACAAGC
* ** * * * *
85103 TTATTCCA-AATAAAATAATACTAATCTAGCAATATTACAAAATTTAATAACTAATAGATTTAAA
1 TTATT-CAGAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAA
* * * * * * *
85167 AATTAAATTTGTTTACTGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAA
65 AA-TAAATCTGTTTACTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAA
85232 TCATTATGAA-TTTT
129 TCATTATGAACTTTT
85246 CAAAGTATTA
Statistics
Matches: 680, Mismatches: 146, Indels: 72
0.76 0.16 0.08
Matches are distributed among these distances:
175 3 0.00
176 25 0.04
177 6 0.01
178 12 0.02
179 196 0.29
180 96 0.14
181 320 0.47
182 16 0.02
183 6 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (180 bp):
TTATTCAGAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAA
ATAAATCTGTTTACTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATC
ATTATGAACTTTTGTTTTGTCATAAAACAATTATGTTTCATCATACAAGC
Found at i:85222 original size:362 final size:353
Alignment explanation
Indices: 84207--85245 Score: 962
Period size: 362 Copynumber: 2.9 Consensus size: 353
84197 TGTACAAAAT
* * *
84207 TATTCAGAATAAAATAATACTATTTTATTACTATTTTG-AAAACTAAT-A--AG-AGATTTAAAA
1 TATTCAGAATAAAATAATACTAATTTATTAATA-TTTGAAAAATTAATAAGTAGAAGATTTAAAA
* * * * * *
84267 ACTAAATCTCTTTATTGAACCAATTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAAT
65 AATAAATCTATTTATAGAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAAT
* * * * * * *
84332 TGATATGATTTTTGTTTTGTCCTAAAACATTTAATTTTTGTTCA-ACAAGCTTATT-CAGAGTAA
129 TGTTATGCTTTTTGTTTTGTCATAAAACAATT-A--TTTCTTCATACAAACTTATTCCA-AATAA
** * *
84395 AAT-ATTGTGAAATTAATAATATT-CTAAACATTAATAAGTAAGGATTTAAAAAATAAATGTGTT
190 AATAATACT--AATTAATAATATTAC-AAA-ATTAATAAGTAAAGATTT-AAAAATAAATCTGTT
* * * * * *
84458 TGCTGAATCAGTTCAAATAGTTAAGACTATTAGAACAATTATCTATTTCAAATCGTTTTGACCTT
250 TACTGAATCAATTCAAATAGTTAAGGCTATT-GAACAATTATCTATTTCAAATCATTATGAACTT
* * *
84523 TTGTTTAGTCATAAAATAATTGCTTCAACTCATACATGCT
314 TTGTTTAGCCATAAAATAATTGCTTCAACTCATACAAGCC
* * ** *
84563 TATT-TGAAATAAAATAATACTAATTTATTAACATTCAAAAAATTATTAAGTAAGAA-A-TTAAA
1 TATTCAG-AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGT-AGAAGATTTAAA
** * * * **
84625 AAA-AAATCTATTTACCGAACAAGTTCAAATATTTTTAACTATTTGAACAATTATATATTTAAAA
64 AAATAAATCTATTTATAGAAC-AGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAA
* * * * * * *
84689 TCGTTATGACCTTATATTTTATCATAAAACAATTGTTTCAGTTCATA-AAAGCTTA-TCTGAAAT
128 TTGTTATG-CTTTTTGTTTTGTCATAAAACAATTATTTC--TTCATACAAA-CTTATTC-CAAAT
* * * * * * *
84752 AAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATCAGT
188 AAAATAATACTA-ATTAATAATATTA-CAAAATTAATAAG-TAAAGATTTAAAA-ATAAATCTGT
* * * * *
84817 TTATTGAATCAATTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAATCATTATGAACT
249 TTACTGAATCAATTCAAATAGTTAAGGCTA-TTGAACAATTATCTATTTCAAATCATTATGAACT
* **
84882 TTTGTTTTGCCATAAAATAATTATTTTTC-A-TCATACAAGCC
313 TTTGTTTAGCCATAAAATAA-T-TGCTTCAACTCATACAAGCC
*
84923 TATTCAGAGTAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGAAGATTTAAAAA
1 TATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGAAGATTTAAAAA
* * * *
84988 ATAAATCTGTTTATAGAATCAGTTCAAATAGTTATGACTGTTTAAACAATTATAGATTTCCAATT
66 ATAAATCTATTTATAGAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAATT
85053 GTTATAGCTTTTTGTTTTGTCATAAAACAATTATATATCTTCATACAAACTTATTCCAAATAAAA
130 GTTAT-GCTTTTTGTTTTGTCATAAAACAATTAT-T-TCTTCATACAAACTTATTCCAAATAAAA
** * *
85118 TAATACTAATCTAGCAATATTACAAAATTTAATAACTAATAGATTTAAAAATTAAATTTGTTTAC
192 TAATACTAAT-TAATAATATTACAAAA-TTAATAAGTAA-AGATTTAAAAA-TAAATCTGTTTAC
* *
85183 TGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCATTATGAA-TTTT
253 TGAATCAATTCAAATAGTTAAGGCTAT-TGAACAATTATCTATTTCAAATCATTATGAACTTTT
85246 CAAAGTATTA
Statistics
Matches: 542, Mismatches: 102, Indels: 73
0.76 0.14 0.10
Matches are distributed among these distances:
355 3 0.01
356 37 0.07
357 2 0.00
358 62 0.11
359 63 0.12
360 147 0.27
361 27 0.05
362 191 0.35
363 8 0.01
364 2 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (353 bp):
TATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGAAGATTTAAAAA
ATAAATCTATTTATAGAACAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAATTG
TTATGCTTTTTGTTTTGTCATAAAACAATTATTTCTTCATACAAACTTATTCCAAATAAAATAAT
ACTAATTAATAATATTACAAAATTAATAAGTAAAGATTTAAAAATAAATCTGTTTACTGAATCAA
TTCAAATAGTTAAGGCTATTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTAGCCAT
AAAATAATTGCTTCAACTCATACAAGCC
Found at i:85740 original size:10 final size:11
Alignment explanation
Indices: 85703--85772 Score: 53
Period size: 10 Copynumber: 6.8 Consensus size: 11
85693 TATATTTGTA
85703 ATAAATT-ATT
1 ATAAATTAATT
85713 ATATAA-TAATT
1 ATA-AATTAATT
85724 ATAAATTAATT
1 ATAAATTAATT
*
85735 -TAAATTTA-T
1 ATAAATTAATT
* *
85744 ATAAAATAA-A
1 ATAAATTAATT
*
85754 ATAAAAT-ATT
1 ATAAATTAATT
85764 ATAAATTAA
1 ATAAATTAA
85773 ATATTTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
9 2 0.04
10 32 0.67
11 14 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATAAATTAATT
Found at i:85767 original size:15 final size:15
Alignment explanation
Indices: 85749--85785 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
85739 TTTATATAAA
85749 ATAAAATAAAATATT
1 ATAAAATAAAATATT
*
85764 AT-AAATTAAATATT
1 ATAAAATAAAATATT
85778 -TAAAATAA
1 ATAAAATAA
85786 TATTACTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
13 1 0.05
14 16 0.84
15 2 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAAAATAAAATATT
Found at i:85835 original size:15 final size:15
Alignment explanation
Indices: 85815--85848 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
85805 TTATTTAGGT
85815 TATATTAATATATAA
1 TATATTAATATATAA
* *
85830 TATATTAATTTATTA
1 TATATTAATATATAA
85845 TATA
1 TATA
85849 ATAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATTAATATATAA
Found at i:86413 original size:30 final size:31
Alignment explanation
Indices: 86373--86434 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
86363 AATTCACAAA
*
86373 TTTTAATATTAA-TA-ACAATATTAAATTAAT
1 TTTTAATATTAATTACACAATATCAAA-TAAT
*
86403 TTTTAGTATTAATTACACAATATCAAATAAT
1 TTTTAATATTAATTACACAATATCAAATAAT
86434 T
1 T
86435 AGGTTTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 11 0.39
31 7 0.25
32 10 0.36
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (31 bp):
TTTTAATATTAATTACACAATATCAAATAAT
Found at i:86822 original size:13 final size:13
Alignment explanation
Indices: 86803--86889 Score: 56
Period size: 13 Copynumber: 6.8 Consensus size: 13
86793 TTTTAAATCC
86803 TTATATATATAATTA
1 TTATA-ATAT-ATTA
86818 TTATAATATATTA
1 TTATAATATATTA
86831 TTATAA-ATATT-
1 TTATAATATATTA
* * *
86842 CTATAATTTAATA
1 TTATAATATATTA
* *
86855 TT-TATTATATAA
1 TTATAATATATTA
* *
86867 TAATATTA-ATTA
1 TTATAATATATTA
86879 TTTATAATATA
1 -TTATAATATA
86890 AATAATTAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
11 5 0.09
12 18 0.33
13 22 0.40
14 5 0.09
15 5 0.09
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATAATATATTA
Found at i:86870 original size:17 final size:16
Alignment explanation
Indices: 86850--86899 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
86840 TTCTATAATT
*
86850 TAATATTTATTATATAA
1 TAATATTAATTAT-TAA
*
86867 TAATATTAATTATTTA
1 TAATATTAATTATTAA
* *
86883 TAATATAAATAATTAA
1 TAATATTAATTATTAA
86899 T
1 T
86900 TATGTACTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 16 0.57
17 12 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATATTAATTATTAA
Found at i:86895 original size:19 final size:19
Alignment explanation
Indices: 86805--86902 Score: 58
Period size: 19 Copynumber: 4.9 Consensus size: 19
86795 TTAAATCCTT
*
86805 ATATATATAATTA-TTATA
1 ATATAAATAATTATTTATA
*
86823 ATATATTATTATAAATATTCTATA
1 ATATA--A--ATAATTATT-TATA
* *
86847 AT-TTAATATTTATTATATA
1 ATATAAATAATTATT-TATA
*
86866 ATA-ATATTAATTATTTATA
1 ATATA-AATAATTATTTATA
*
86885 ATATAAATAATTAATTAT
1 ATATAAATAATTATTTAT
86903 GTACTTGGGA
Statistics
Matches: 60, Mismatches: 11, Indels: 17
0.68 0.12 0.19
Matches are distributed among these distances:
18 5 0.08
19 31 0.52
20 9 0.15
21 1 0.02
22 6 0.10
23 2 0.03
24 6 0.10
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATAAATAATTATTTATA
Found at i:86897 original size:23 final size:22
Alignment explanation
Indices: 86844--86902 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 22
86834 TAAATATTCT
*
86844 ATAATTTAA-TATTTATTATATA
1 ATAA-TTAATTATTTATAATATA
86866 ATAATATTAATTATTTATAATATAA
1 AT-A-ATTAATTATTTATAATAT-A
86891 ATAATTAATTAT
1 ATAATTAATTAT
86903 GTACTTGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 2 0.06
23 14 0.44
24 13 0.41
25 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATAATTAATTATTTATAATATA
Found at i:88191 original size:49 final size:48
Alignment explanation
Indices: 88107--88202 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 48
88097 TATTAATAAC
* * * *
88107 ATATTAATATTTTATACTATATTACTTATTTAATTATA-TTAAATTAAA
1 ATATTAATATTTTATACTATATTAATAAATGAATTA-ACTTAAATTAAA
88155 ATATTAAATATTTTATAC-ATATTAAATAAATGAATTAACTTAAATTAA
1 ATATT-AATATTTTATACTATATT-AATAAATGAATTAACTTAAATTAA
88203 TTATTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 11 0.27
49 30 0.73
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (48 bp):
ATATTAATATTTTATACTATATTAATAAATGAATTAACTTAAATTAAA
Found at i:88303 original size:10 final size:11
Alignment explanation
Indices: 88282--88321 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
88272 ATGTTTAACA
*
88282 TAATTCATAAT
1 TAATTAATAAT
88293 TAATT-ATAAT
1 TAATTAATAAT
88303 TAATTAATAA-
1 TAATTAATAAT
88313 T-ATTAATAA
1 TAATTAATAA
88322 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:88319 original size:13 final size:14
Alignment explanation
Indices: 88289--88331 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
88279 ACATAATTCA
*
88289 TAATTAATTATAAT
1 TAATTAATAATAAT
88303 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
88316 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
88331 T
1 T
88332 TATATAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:88338 original size:17 final size:17
Alignment explanation
Indices: 88308--88340 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
88298 ATAATTAATT
88308 AATAATATTAATAAATA
1 AATAATATTAATAAATA
88325 AATAAT-TTATATAAAT
1 AATAATATTA-ATAAAT
88341 TATTTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATATTAATAAATA
Found at i:89346 original size:19 final size:18
Alignment explanation
Indices: 89322--89372 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
89312 TAATTAAATG
89322 ATTAAACAAATAAT-TTATA
1 ATTAAA-AAATAATATT-TA
*
89341 ATTAAATATATAATATTTA
1 ATTAAA-AAATAATATTTA
89360 A-TAAAAAATAATA
1 ATTAAAAAATAATA
89373 ATTATTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 7 0.25
18 4 0.14
19 15 0.54
20 2 0.07
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
ATTAAAAAATAATATTTA
Found at i:89416 original size:11 final size:10
Alignment explanation
Indices: 89397--89445 Score: 61
Period size: 10 Copynumber: 5.2 Consensus size: 10
89387 ATTTTAGAAT
89397 TAAATTATAA
1 TAAATTATAA
89407 TAAGATTAT-A
1 TAA-ATTATAA
89417 -AAATTATAA
1 TAAATTATAA
89426 TAAATTATAA
1 TAAATTATAA
89436 -AAATTA-AA
1 TAAATTATAA
89444 TA
1 TA
89446 TAATAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
8 7 0.20
9 10 0.29
10 13 0.37
11 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
TAAATTATAA
Found at i:89431 original size:29 final size:23
Alignment explanation
Indices: 89394--89456 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
89384 TTAATTTTAG
89394 AATTAAATTATAATAAGATTAT-AA
1 AATTAAA-TATAATAA-ATTATAAA
89418 AA-T---TATAATAAATTATAAA
1 AATTAAATATAATAAATTATAAA
89437 AATTAAATATAATAAATTAT
1 AATTAAATATAATAAATTAT
89457 TTATTAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
18 5 0.15
19 12 0.35
20 1 0.03
23 14 0.41
24 2 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
AATTAAATATAATAAATTATAAA
Found at i:89445 original size:18 final size:19
Alignment explanation
Indices: 89398--89437 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
89388 TTTTAGAATT
89398 AAATTATAATAAGATTATA
1 AAATTATAATAAGATTATA
89417 AAATTATAATAA-ATTATA
1 AAATTATAATAAGATTATA
89435 AAA
1 AAA
89438 ATTAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
AAATTATAATAAGATTATA
Found at i:89539 original size:10 final size:10
Alignment explanation
Indices: 89524--89548 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
89514 GATATATTAA
89524 TATTAATAAC
1 TATTAATAAC
89534 TATTAATAAC
1 TATTAATAAC
89544 TATTA
1 TATTA
89549 TTACTTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (10 bp):
TATTAATAAC
Found at i:90725 original size:18 final size:19
Alignment explanation
Indices: 90697--90761 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
90687 CTTTAATTGT
*
90697 TATTATTAATAAAATTATA
1 TATTAATAATAAAATTATA
*
90716 TATTAA-AATAGTAATTAT-
1 TATTAATAATA-AAATTATA
90734 TATCTATATAATAATAATTATA
1 TAT-TA-ATAATAA-AATTATA
90756 -ATTAAT
1 TATTAAT
90762 TATATTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
18 7 0.19
19 15 0.41
20 3 0.08
21 12 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
TATTAATAATAAAATTATA
Found at i:90965 original size:24 final size:24
Alignment explanation
Indices: 90906--90997 Score: 80
Period size: 24 Copynumber: 3.8 Consensus size: 24
90896 TTATATTATT
*
90906 ATTAAAATTATTAA-TAATTAAATA
1 ATTAAAATTATTAATTAA-TAATTA
* *
90930 ATTCAAATTATTAATTAATAATTT
1 ATTAAAATTATTAATTAATAATTA
* *
90954 ATTAAAAGTATTAGTTTAATATATTA
1 ATTAAAATTATTA-ATTAATA-ATTA
* *
90980 ATTAATATT-TTGATTAAT
1 ATTAAAATTATTAATTAAT
90998 TTAATCTATT
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
24 33 0.61
25 11 0.20
26 10 0.19
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (24 bp):
ATTAAAATTATTAATTAATAATTA
Found at i:91201 original size:17 final size:18
Alignment explanation
Indices: 91181--91238 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 18
91171 ATTATTTTAA
*
91181 TTAATTAATTAATCAAT-
1 TTAATTAATTAATAAATG
* *
91198 TTAATTAAATATTAAATG
1 TTAATTAATTAATAAATG
91216 TTAATTAATATAAATAAAATG
1 TTAATTAAT-T-AAT-AAATG
91237 TT
1 TT
91239 TCTTTTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
17 14 0.44
18 8 0.25
19 1 0.03
20 2 0.06
21 7 0.22
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (18 bp):
TTAATTAATTAATAAATG
Found at i:91237 original size:21 final size:21
Alignment explanation
Indices: 91198--91238 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
91188 ATTAATCAAT
91198 TTAATTAAATATTAAATGTTAA
1 TTAATTAAATA-TAAATGTTAA
91220 TTAATATAAATA-AAATGTT
1 TTAAT-TAAATATAAATGTT
91239 TCTTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAATTAAATATAAATGTTAA
Found at i:91331 original size:24 final size:25
Alignment explanation
Indices: 91274--91331 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
91264 AAATAATTAA
* *
91274 TTAAATATTTTTAATTTAATAGATAT
1 TTAAATATTTTAAATTT-ATAGAAAT
* *
91300 TGATATATTTTAAATTT-TAGAAAT
1 TTAAATATTTTAAATTTATAGAAAT
91324 TTAAATAT
1 TTAAATAT
91332 ATATTAGTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 12 0.46
26 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (25 bp):
TTAAATATTTTAAATTTATAGAAAT
Found at i:91747 original size:14 final size:13
Alignment explanation
Indices: 91708--91749 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
91698 TTGTATTATT
91708 TAAATAAATAATA
1 TAAATAAATAATA
**
91721 T-TCTAAATAATA
1 TAAATAAATAATA
91733 TAAATAAATTAATA
1 TAAATAAA-TAATA
91747 TAA
1 TAA
91750 TCATAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 5 0.22
14 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATAAATAATA
Found at i:92291 original size:31 final size:33
Alignment explanation
Indices: 92216--92294 Score: 87
Period size: 31 Copynumber: 2.5 Consensus size: 33
92206 CTATAATATA
* *
92216 TATTAATTTTAAA-T-ATTAAATCTAATTTATT
1 TATTAATTTAAAATTAATTAAATCTAATTTACT
*
92247 TATATAA-TTAAAATTAATTAAAT-T-TTTTACT
1 TAT-TAATTTAAAATTAATTAAATCTAATTTACT
92278 TATTAATTTAAAATTAA
1 TATTAATTTAAAATTAA
92295 AATAATTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 3 0.07
31 26 0.63
32 5 0.12
33 7 0.17
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.52
Consensus pattern (33 bp):
TATTAATTTAAAATTAATTAAATCTAATTTACT
Found at i:92346 original size:17 final size:17
Alignment explanation
Indices: 92304--92356 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
92294 AAATAATTGT
92304 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
92320 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
92338 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
92355 TA
1 TA
92357 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:92347 original size:22 final size:23
Alignment explanation
Indices: 92306--92361 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
92296 ATAATTGTTA
92306 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
92327 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
92349 AAAATATAATATA
1 TAATTATAATATA
92362 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:92389 original size:20 final size:19
Alignment explanation
Indices: 92366--92404 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
92356 AATATAAATA
*
92366 TTTAAATTTTAAATACTAAT
1 TTTAAATATTAAA-ACTAAT
92386 TTTAAATATTAAAACTAAT
1 TTTAAATATTAAAACTAAT
92405 ATATATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAAATATTAAAACTAAT
Found at i:92521 original size:13 final size:13
Alignment explanation
Indices: 92505--92529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92495 AATACAAATA
92505 AATCTAATTATTT
1 AATCTAATTATTT
92518 AATCTAATTATT
1 AATCTAATTATT
92530 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:92585 original size:21 final size:22
Alignment explanation
Indices: 92555--92609 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
92545 AGTTTATTAT
92555 ATAAACTATTGTTAT-AAGTATA
1 ATAAACTATTGTTATGAA-TATA
*
92577 ATAAA-TATTG-CATGAATATA
1 ATAAACTATTGTTATGAATATA
*
92597 ATAAATTATTGTT
1 ATAAACTATTGTT
92610 TATTATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 11 0.39
21 12 0.43
22 5 0.18
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (22 bp):
ATAAACTATTGTTATGAATATA
Found at i:92616 original size:20 final size:19
Alignment explanation
Indices: 92546--92618 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 19
92536 GTATTAATTA
92546 GTTTATTAT-ATAAACTATT
1 GTTTATTATAATAAA-TATT
*
92565 GTTATAAGTATAATAAATATT
1 GTT-T-ATTATAATAAATATT
* * *
92586 GCATGAATATAATAAATTATT
1 G-TTTATTATAATAAA-TATT
92607 GTTTATTATAAT
1 GTTTATTATAAT
92619 TTAAATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.07
20 19 0.45
21 14 0.33
22 6 0.14
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (19 bp):
GTTTATTATAATAAATATT
Found at i:92990 original size:18 final size:18
Alignment explanation
Indices: 92947--92990 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
92937 AGGTTGAGGA
*
92947 AAATTATATTATTATAAT
1 AAATTATATAATTATAAT
* * *
92965 ATAGTATATAATTATTAT
1 AAATTATATAATTATAAT
92983 AAATTATA
1 AAATTATA
92991 ATTAATATAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATTATATAATTATAAT
Found at i:93119 original size:20 final size:21
Alignment explanation
Indices: 93081--93120 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
93071 CAATATCTGC
93081 TTCAAGTTATTATATATTTTA
1 TTCAAGTTATTATATATTTTA
*
93102 TTCAA-TTATT-TATAATTTA
1 TTCAAGTTATTATATATTTTA
93121 ATGTATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 5 0.28
21 5 0.28
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (21 bp):
TTCAAGTTATTATATATTTTA
Found at i:94463 original size:24 final size:21
Alignment explanation
Indices: 94435--94479 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
94425 CTTAACTATA
94435 TATAAATATAATATCAAAATTATT
1 TATAAATAT-ATAT--AAATTATT
*
94459 TATAATTATATATAAATTATT
1 TATAAATATATATAAATTATT
94480 AAATCATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
23 4 0.20
24 8 0.40
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TATAAATATATATAAATTATT
Found at i:94576 original size:30 final size:30
Alignment explanation
Indices: 94536--94639 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 30
94526 ATATTTAATG
*
94536 TTATATTAAATAAAATTAATATAATAATTA
1 TTATAATAAATAAAATTAATATAATAATTA
* * *
94566 TTATAATAAATAATATTAAATAATATTATATTG
1 TTATAATAAATAAAATT-AAT-ATAATA-ATTA
* *
94599 TTATAATAAATAATAACAATAAATATAATAATAA
1 TTATAAT--A-AATAA-AATTAATATAATAATTA
94633 TTATAAT
1 TTATAAT
94640 TGTTTTCATA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
30 15 0.26
31 3 0.05
32 5 0.09
33 10 0.17
34 9 0.16
35 6 0.10
36 8 0.14
37 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (30 bp):
TTATAATAAATAAAATTAATATAATAATTA
Found at i:94587 original size:10 final size:10
Alignment explanation
Indices: 94538--94593 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
94528 ATTTAATGTT
94538 ATATTAAATA
1 ATATTAAATA
*
94548 AAATTAATATA
1 ATATTAA-ATA
*
94559 ATAATT--ATT
1 AT-ATTAAATA
*
94568 ATAATAAATA
1 ATATTAAATA
94578 ATATTAAATA
1 ATATTAAATA
94588 ATATTA
1 ATATTA
94594 TATTGTTATA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
8 2 0.06
9 4 0.11
10 23 0.64
11 4 0.11
12 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATTAAATA
Done.