genome.fa.s349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168174.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27923

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3252--3297	23	2.0	23	100	0	92	47	4	21	26	1.69
5240--5297	6	10.0	6	82	14	77	34	0	0	65	0.93
5240--5306	21	3.2	21	83	8	84	37	0	0	62	0.95
5240--5297	27	2.2	27	90	6	93	34	0	0	65	0.93
5238--5305	31	2.3	29	81	18	86	38	0	0	61	0.96
7758--7790	15	2.2	15	100	0	66	45	6	0	48	1.27
7773--8034	78	3.2	78	76	16	301	41	14	8	35	1.76
7851--7883	15	2.2	15	100	0	66	45	6	0	48	1.27
7685--7961	93	3.0	93	100	0	554	41	14	7	36	1.74
9834--9871	18	2.1	18	100	0	76	34	15	21	28	1.94
10189--10422	18	13.1	18	96	3	397	50	12	14	22	1.76
10437--10776	30	11.3	30	100	0	680	36	23	23	16	1.94
12866--12989	45	2.9	44	89	8	186	24	0	4	70	1.09
12899--12976	13	6.5	13	79	19	82	23	0	5	71	1.05
12862--12989	4	32.2	4	70	22	85	24	0	3	71	1.08
13001--13124	35	3.3	35	84	14	176	48	1	0	50	1.10
13014--13121	42	2.6	42	91	5	166	50	0	0	49	1.07
13014--13171	77	2.1	77	82	7	187	51	2	1	44	1.23
13001--13189	17	10.4	18	68	17	79	51	2	1	44	1.22
13201--13282	19	4.3	19	83	6	69	67	2	4	25	1.23
13210--13296	19	4.5	19	84	2	95	64	2	6	26	1.31
13291--13324	17	2.0	17	94	0	59	61	8	0	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13323--13372	15	3.1	15	84	15	73	60	8	0	32	1.26
13326--13363	18	2.1	18	100	0	76	63	10	0	26	1.27
13458--13509	25	2.1	25	96	0	95	50	15	13	21	1.78
13548--13596	17	2.9	16	80	17	55	77	2	6	14	1.05
14544--14594	22	2.4	22	93	3	86	37	7	3	50	1.50
18017--18079	21	3.2	21	89	10	98	34	0	0	65	0.93
18010--18079	13	5.5	13	80	19	85	35	0	0	64	0.94
18257--18334	10	7.6	10	80	13	63	32	7	0	60	1.25
18259--18326	27	2.5	26	86	6	100	30	8	0	60	1.27
18285--18327	11	4.0	11	93	6	79	27	9	0	62	1.25
18325--18382	20	2.8	21	81	7	64	27	13	1	56	1.47
18255--18376	21	6.0	21	79	14	73	28	12	0	58	1.40
18257--18341	21	3.5	24	78	18	95	30	9	0	60	1.29
18368--18401	17	2.0	17	100	0	68	35	11	0	52	1.38
22964--23049	22	4.1	22	82	14	128	46	9	5	38	1.60
22991--23080	17	5.0	17	85	12	126	46	11	6	35	1.66
22969--23066	39	2.5	39	98	0	187	46	10	6	36	1.63
23296--23339	22	2.0	22	100	0	88	45	4	18	31	1.69
24216--24327	36	3.1	36	94	0	197	35	25	11	27	1.90
24287--24376	42	2.1	42	93	0	153	33	20	10	36	1.86
24373--24772	21	19.0	21	78	5	333	29	19	10	41	1.84
24323--24465	42	3.1	48	77	13	147	28	18	8	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24325--24583	128	2.0	128	88	6	380	29	20	9	40	1.84
24845--25034	24	8.0	24	97	2	366	21	33	16	28	1.95
24845--25034	47	4.0	48	99	0	366	21	33	16	28	1.95
25021--25114	36	2.6	36	98	0	179	35	23	12	28	1.92
25330--25553	36	6.2	36	98	1	432	28	19	10	41	1.85
25330--25553	107	2.1	108	98	0	432	28	19	10	41	1.85
25806--25841	18	2.0	18	100	0	72	27	22	5	44	1.75
26422--26470	23	2.1	23	96	0	89	46	18	4	30	1.67

Tables:   1

The End!